Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 417 of 444
Found at i:121032068 original size:46 final size:46
Alignment explanation
Indices: 121031918--121032138 Score: 283
Period size: 46 Copynumber: 4.8 Consensus size: 46
121031908 TGTAACCCTC
* *
121031918 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
121031964 CCATAAGTGAACTCGGAATCAA-TCAACGAGCTT-GGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGA---C--GTTCGCAT
* *
121032013 -C-TTA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
121032056 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
121032102 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
121032139 TGCCAAAATA
Statistics
Matches: 151, Mismatches: 12, Indels: 24
0.81 0.06 0.13
Matches are distributed among these distances:
42 3 0.02
43 3 0.02
44 2 0.01
45 12 0.08
46 110 0.73
47 13 0.09
48 2 0.01
49 3 0.02
50 3 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:121037957 original size:245 final size:247
Alignment explanation
Indices: 121037540--121038017 Score: 750
Period size: 245 Copynumber: 1.9 Consensus size: 247
121037530 ATTAATCTTC
* *
121037540 TAAATATTCATATTTAATATTTACGAACTCGATTACAAAAATGGGGTTCTGAAACTGCCTTTTTA
1 TAAATATTCATATTTAATATTTACGAACTCGATTACAAAAATAGGGTTCTAAAACTGCCTTTTTA
* *
121037605 GGTACTACTGAAAATCGAGCTGTTACAATTGTGAGCCACCTTGCAAGCTCATGCCTTGTTGGTTA
66 GGTACTACTAAAAATCGAGCTGTTACAATTGTGAGCCACCTTGCAAGCTCATGCCTTGTAGGTTA
* * *
121037670 GCTCTTTTTACTAAGATCATGTTGTGAGCTAAGACACTTGAGAGCCCGAAACCTTACAAGCTTGA
131 GCTCTTTTGACCAAGATCACGTTGTGAGCTAAGACACTTGAGAGCCCGAAACCTTACAAGCTTGA
** *
121037735 ATGATCAAAACCACTTACTTGATATAGATGAGAGGTCTTTATATTAACCCCG
196 ACAATCAAAACCACTTACTTGACATAGATGAGAGGTCTTTATATTAACCCCG
121037787 TAAATATTCATATTT-ATATTTAC-AGACTCG-TTACAAAAATAGGGTT-TAAAAACTGCCTTTT
1 TAAATATTCATATTTAATATTTACGA-ACTCGATTACAAAAATAGGGTTCT-AAAACTGCCTTTT
* * *
121037848 TCA-GTACTACTAAAAATTGAGTTGTTACAATTGTGAGCCACCTTGCGAGCTCATGCCTTGTAGG
64 T-AGGTACTACTAAAAATCGAGCTGTTACAATTGTGAGCCACCTTGCAAGCTCATGCCTTGTAGG
* *
121037912 TTAGCTCTTTTGACCAAGATCACGTTGTGAGCTAAGACACTTGAGAGCCCGAGATCTTACAAGCT
128 TTAGCTCTTTTGACCAAGATCACGTTGTGAGCTAAGACACTTGAGAGCCCGAAACCTTACAAGCT
*
121037977 TGAACAATCAAAACTACTTACTTGACATAGATGAGAGGTCT
193 TGAACAATCAAAACCACTTACTTGACATAGATGAGAGGTCT
121038018 GCCATTCAAA
Statistics
Matches: 212, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
244 1 0.00
245 182 0.86
246 14 0.07
247 15 0.07
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (247 bp):
TAAATATTCATATTTAATATTTACGAACTCGATTACAAAAATAGGGTTCTAAAACTGCCTTTTTA
GGTACTACTAAAAATCGAGCTGTTACAATTGTGAGCCACCTTGCAAGCTCATGCCTTGTAGGTTA
GCTCTTTTGACCAAGATCACGTTGTGAGCTAAGACACTTGAGAGCCCGAAACCTTACAAGCTTGA
ACAATCAAAACCACTTACTTGACATAGATGAGAGGTCTTTATATTAACCCCG
Found at i:121039784 original size:46 final size:46
Alignment explanation
Indices: 121039731--121039906 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
121039721 TATTTGGGCA
*
121039731 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAGCG
* * * * *
121039777 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATG---CGA-GCG
**
121039824 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAGCG
* *
121039870 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGG
121039907 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 66 0.60
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAGCG
Found at i:121039886 original size:93 final size:93
Alignment explanation
Indices: 121039727--121039898 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
121039717 GGGATATTTG
* * *
121039727 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
121039792 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* *
121039820 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
121039885 TTGAGTCCAAGTTC
66 TTGAGTCCAAGTTC
121039899 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:121041469 original size:2 final size:2
Alignment explanation
Indices: 121041462--121041495 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
121041452 AGTAGGTTTA
121041462 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121041496 GGCTCTTGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121041725 original size:18 final size:18
Alignment explanation
Indices: 121041658--121041728 Score: 56
Period size: 18 Copynumber: 3.9 Consensus size: 18
121041648 TGTGTCAAAC
*
121041658 AAAAGTAAAAAAGAAATTA
1 AAAATTAAAAAA-AAATTA
* * *
121041677 TAAATTTAAAAAATATTAGA
1 AAAATTAAAAAAAAATT--A
*
121041697 AAAATT--AAAAACATTA
1 AAAATTAAAAAAAAATTA
121041713 AAAATTAAAAAAAAAT
1 AAAATTAAAAAAAAAT
121041729 CATTAAAAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
16 7 0.17
18 19 0.46
19 9 0.22
20 6 0.15
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.24
Consensus pattern (18 bp):
AAAATTAAAAAAAAATTA
Found at i:121041778 original size:16 final size:15
Alignment explanation
Indices: 121041759--121041788 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
121041749 CAAAAATCAT
121041759 AAAACTTAAAAAAATA
1 AAAAC-TAAAAAAATA
121041775 AAAACTAAAAAAAT
1 AAAACTAAAAAAAT
121041789 TCATAATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.17
Consensus pattern (15 bp):
AAAACTAAAAAAATA
Found at i:121043560 original size:2 final size:2
Alignment explanation
Indices: 121043553--121043585 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
121043543 CTCATAACTG
121043553 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121043586 GTAAGTTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:121046579 original size:13 final size:13
Alignment explanation
Indices: 121046543--121046573 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
121046533 ATTTATTTTC
121046543 TTTTCGATTTGTT
1 TTTTCGATTTGTT
121046556 TTTTCGATTTGTT
1 TTTTCGATTTGTT
121046569 TTTTC
1 TTTTC
121046574 TCTTTGGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.10, G:0.13, T:0.71
Consensus pattern (13 bp):
TTTTCGATTTGTT
Found at i:121047404 original size:26 final size:26
Alignment explanation
Indices: 121047375--121047435 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
121047365 ATTAAAAAAA
121047375 TATTTTATATATCATTCATTTTAAAT
1 TATTTTATATATCATTCATTTTAAAT
* * *
121047401 TATTTTTTATATATTATTTATTTTAACT
1 TA--TTTTATATATCATTCATTTTAAAT
*
121047429 TGTTTTA
1 TATTTTA
121047436 ATGTAATGCT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 7 0.24
28 22 0.76
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (26 bp):
TATTTTATATATCATTCATTTTAAAT
Found at i:121047661 original size:13 final size:15
Alignment explanation
Indices: 121047645--121047700 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 15
121047635 TTTAAACTTT
121047645 TATT-ATTT-TTTTA
1 TATTAATTTATTTTA
121047658 TATTAATTTATTTTA
1 TATTAATTTATTTTA
**
121047673 TA-TACCTTATTTTA
1 TATTAATTTATTTTA
*
121047687 TATTCTATTTATTT
1 TATT-AATTTATTT
121047701 ATTTTAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
13 4 0.12
14 16 0.47
15 8 0.24
16 6 0.18
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTAATTTATTTTA
Found at i:121047778 original size:2 final size:2
Alignment explanation
Indices: 121047733--121047761 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
121047723 TTTTTACACT
121047733 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121047762 TTAACTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:121047879 original size:21 final size:20
Alignment explanation
Indices: 121047838--121047881 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
121047828 CATTATTTGT
*
121047838 TTTAAATTTATTTATTATTA
1 TTTAAATTTATTCATTATTA
* *
121047858 TTTATATTCTATTCATTTTTA
1 TTTAAATT-TATTCATTATTA
121047879 TTT
1 TTT
121047882 GTTTTATGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTAAATTTATTCATTATTA
Found at i:121050307 original size:21 final size:21
Alignment explanation
Indices: 121050281--121050321 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
121050271 TTATGATTAA
* *
121050281 GTGTGATTTTGAGCATCCTAG
1 GTGTGAATTTGAACATCCTAG
121050302 GTGTGAATTTGAACATCCTA
1 GTGTGAATTTGAACATCCTA
121050322 TTGGGTTGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (21 bp):
GTGTGAATTTGAACATCCTAG
Found at i:121059109 original size:2 final size:2
Alignment explanation
Indices: 121059102--121059127 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
121059092 TATGTTTTCG
121059102 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
121059128 TATGATTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121064003 original size:226 final size:226
Alignment explanation
Indices: 121063633--121064061 Score: 662
Period size: 226 Copynumber: 1.9 Consensus size: 226
121063623 ATCTGCATCC
* * *
121063633 TAACTTGGTAGGTTATCTGTAAAGATGGAAATAAGAGGAGGAGTGCACTTACGGAGCTCAGTATG
1 TAACCTGGTAGGTTATCTGTAAAGATGGAAATAAGAGGAGGAGTGCACTTACAGAGCTCAGTATA
*
121063698 AGTCCAATCACAAGAAAACCAGTGCAAACAATAGACAAATCGTACAAAATATCAACTTATAGAAT
66 AGTCCAATCACAAGAAAACCAGTGCAAACAATAGACAAATCGTACAAAATATCAACTCATAGAAT
* * *
121063763 GATCACAATTGAATAGAAA-TCTAAAATTTTGGTATTTCAAATCAACTCATCGCCATAATATCTC
131 GATCACAATTGAATACAAATTC-AAAATTTTGGTATTTCAAATAAACTCATCACCATAATATCTC
121063827 AATATTCACCTCTGTATACCGAGTCCGCGTCA
195 AATATTCACCTCTGTATACCGAGTCCGCGTCA
* * * * * * *
121063859 TAACCTGGTGGGTTATTTGTAAATATGGAAATAAGAGGGGGAGTGCGCTTATAGAGCTCAGTGTA
1 TAACCTGGTAGGTTATCTGTAAAGATGGAAATAAGAGGAGGAGTGCACTTACAGAGCTCAGTATA
* ** *
121063924 AGTTCAATCACTGGAAAACCAGTGCAAACAATAGACAAATTGTACAAAATATCAACTCATAGAAT
66 AGTCCAATCACAAGAAAACCAGTGCAAACAATAGACAAATCGTACAAAATATCAACTCATAGAAT
* *
121063989 GATCGCAATTGAATACCAATTCAAAATTTTGGTATTTCAAATAAACTCATCACCATAATATCTCA
131 GATCACAATTGAATACAAATTCAAAATTTTGGTATTTCAAATAAACTCATCACCATAATATCTCA
121064054 ATATTCAC
196 ATATTCAC
121064062 ATCTATGCAA
Statistics
Matches: 182, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
226 180 0.99
227 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (226 bp):
TAACCTGGTAGGTTATCTGTAAAGATGGAAATAAGAGGAGGAGTGCACTTACAGAGCTCAGTATA
AGTCCAATCACAAGAAAACCAGTGCAAACAATAGACAAATCGTACAAAATATCAACTCATAGAAT
GATCACAATTGAATACAAATTCAAAATTTTGGTATTTCAAATAAACTCATCACCATAATATCTCA
ATATTCACCTCTGTATACCGAGTCCGCGTCA
Found at i:121067468 original size:46 final size:46
Alignment explanation
Indices: 121067401--121067540 Score: 174
Period size: 46 Copynumber: 3.0 Consensus size: 46
121067391 GTGTGCTCTC
* *
121067401 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
**
121067447 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * * *
121067493 TGACA-GAAAATGAGTAAGACTATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
121067539 TG
1 TG
121067541 TCAAAGATAA
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 1 0.01
46 80 0.99
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:121070113 original size:25 final size:25
Alignment explanation
Indices: 121070072--121070129 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
121070062 TCATGTACAT
*
121070072 GTATGCTCATACGAGCTGT-GAATCG
1 GTATGCTCATACAAGCTGTAG-ATCG
121070097 GTATGCTCACT-CAAGCTGTAGATCG
1 GTATGCTCA-TACAAGCTGTAGATCG
121070122 GTATGCTC
1 GTATGCTC
121070130 TGTGGATCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 28 0.93
26 2 0.07
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (25 bp):
GTATGCTCATACAAGCTGTAGATCG
Found at i:121072016 original size:18 final size:18
Alignment explanation
Indices: 121071982--121072265 Score: 132
Period size: 18 Copynumber: 15.4 Consensus size: 18
121071972 TCATTAACTC
* *
121071982 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAATTAT
* *
121071999 TCAGTAACAGTCAGTTAT
1 TCAGTAACAATCAATTAT
**
121072017 TTGGTAACAATCAATTAT
1 TCAGTAACAATCAATTAT
* * *
121072035 TCAATAATAA-CTAGTTAT
1 TCAGTAACAATC-AATTAT
*
121072053 TCAGTATCGATCAATTAATCGGTTAT
1 TCAGTA---A-CAATCAA----TTAT
* * *
121072079 CCAGTAACAGTAAATTAT
1 TCAGTAACAATCAATTAT
121072097 TCAGTAA-AATC-ATATAT
1 TCAGTAACAATCAAT-TAT
*
121072114 TCAGTAACAATTAAGTTAT
1 TCAGTAACAATCAA-TTAT
* *
121072133 TCAGTAGCAGTC-ATTCAT
1 TCAGTAACAATCAATT-AT
* *
121072151 TCAGTGACAATCAGTTAT
1 TCAGTAACAATCAATTAT
**
121072169 TCAGTAATGATCAATTAT
1 TCAGTAACAATCAATTAT
* * *
121072187 TCAGTAATATTCAGTTAT
1 TCAGTAACAATCAATTAT
* *
121072205 TCAGTAATAGTCTAA-TAT
1 TCAGTAACAATC-AATTAT
* *
121072223 CCAGTAACAGTCAATTA-
1 TCAGTAACAATCAATTAT
* *
121072240 TCTGGTAACAGTCAATTAT
1 TC-AGTAACAATCAATTAT
121072259 TCAGTAA
1 TCAGTAA
121072266 TTTCAGTTAT
Statistics
Matches: 202, Mismatches: 44, Indels: 41
0.70 0.15 0.14
Matches are distributed among these distances:
16 2 0.01
17 22 0.11
18 140 0.69
19 18 0.09
20 1 0.00
21 1 0.00
22 8 0.04
23 1 0.00
26 9 0.04
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (18 bp):
TCAGTAACAATCAATTAT
Found at i:121072035 original size:36 final size:36
Alignment explanation
Indices: 121071982--121072265 Score: 150
Period size: 36 Copynumber: 7.7 Consensus size: 36
121071972 TCATTAACTC
* *
121071982 TCAG-AACAATTATTTATTCAGTAACAGTCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAGTCAGTTAT
** * * *
121072017 TTGGTAACAATCAATTATTCAATAATA-ACTAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAGTC-AGTTAT
* * * *
121072053 TCAGTATCGATCAATTAATCGGTTATCCAGTAACAGTAAATTAT
1 TCAGTA---A-CAATCAA----TTATTCAGTAACAGTCAGTTAT
* *
121072097 TCAGTAA-AATC-ATATATTCAGTAACAATTAAGTTAT
1 TCAGTAACAATCAAT-TATTCAGTAAC-AGTCAGTTAT
* * * *
121072133 TCAGTAGCAGTC-ATTCATTCAGTGACAATCAGTTAT
1 TCAGTAACAATCAATT-ATTCAGTAACAGTCAGTTAT
** * *
121072169 TCAGTAATGATCAATTATTCAGTAATATTCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAGTCAGTTAT
* * * *
121072205 TCAGTAATAGTCTAA-TATCCAGTAACAGTCAATTA-
1 TCAGTAACAATC-AATTATTCAGTAACAGTCAGTTAT
* *
121072240 TCTGGTAACAGTCAATTATTCAGTAA
1 TC-AGTAACAATCAATTATTCAGTAA
121072266 TTTCAGTTAT
Statistics
Matches: 189, Mismatches: 41, Indels: 37
0.71 0.15 0.14
Matches are distributed among these distances:
34 1 0.01
35 17 0.09
36 119 0.63
37 19 0.10
38 1 0.01
39 4 0.02
40 6 0.03
41 1 0.01
44 21 0.11
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (36 bp):
TCAGTAACAATCAATTATTCAGTAACAGTCAGTTAT
Found at i:121072660 original size:15 final size:17
Alignment explanation
Indices: 121072626--121072661 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
121072616 CACTTTTCAG
121072626 TTTTCAATTAATTCATA
1 TTTTCAATTAATTCATA
121072643 TTTT-AATTAATT-ATA
1 TTTTCAATTAATTCATA
121072658 TTTT
1 TTTT
121072662 TTTTCAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.37
16 8 0.42
17 4 0.21
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTCAATTAATTCATA
Found at i:121073878 original size:20 final size:18
Alignment explanation
Indices: 121073844--121073884 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 18
121073834 AAACTTTTAA
121073844 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
121073862 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
121073882 TTT
1 TTT
121073885 CCTTGCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.24
19 6 0.29
20 10 0.48
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:121076485 original size:41 final size:41
Alignment explanation
Indices: 121076428--121076510 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
121076418 GTAGAGTAAA
121076428 AATATTTTTAAGTTTTGTATTTAACCCTATTGGTGCCATCT
1 AATATTTTTAAGTTTTGTATTTAACCCTATTGGTGCCATCT
121076469 AATATTTTTAAGTTTTGTATTTAACCCTATTGGTGCCATCT
1 AATATTTTTAAGTTTTGTATTTAACCCTATTGGTGCCATCT
121076510 A
1 A
121076511 TTTATAAGGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.25, C:0.14, G:0.12, T:0.48
Consensus pattern (41 bp):
AATATTTTTAAGTTTTGTATTTAACCCTATTGGTGCCATCT
Found at i:121077889 original size:3 final size:3
Alignment explanation
Indices: 121077883--121077949 Score: 107
Period size: 3 Copynumber: 22.3 Consensus size: 3
121077873 TATGCAACGC
* * *
121077883 ATT ATT AAT ATT AAT ATT AAT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
121077931 ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT A
121077950 ATTTAATCAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:121080798 original size:2 final size:2
Alignment explanation
Indices: 121080791--121080832 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
121080781 TCATTTCTTT
121080791 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
121080833 GCTCAAAGCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:121083196 original size:5 final size:5
Alignment explanation
Indices: 121083186--121083217 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
121083176 TTGTGTGTTC
121083186 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
121083218 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:121083200 original size:9 final size:9
Alignment explanation
Indices: 121083186--121083216 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
121083176 TTGTGTGTTC
121083186 TTTATTTTA
1 TTTATTTTA
121083195 TTTATTTTA
1 TTTATTTTA
121083204 TTTTATTTTA
1 -TTTATTTTA
121083214 TTT
1 TTT
121083217 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:121084711 original size:22 final size:23
Alignment explanation
Indices: 121084686--121084728 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
121084676 ATGTTTGTAC
*
121084686 TTAAAATATT-ACTTTAAAATCA
1 TTAAAATATTAACTGTAAAATCA
*
121084708 TTAATATATTAACTGTAAAAT
1 TTAAAATATTAACTGTAAAAT
121084729 TAAGTTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (23 bp):
TTAAAATATTAACTGTAAAATCA
Found at i:121086829 original size:21 final size:21
Alignment explanation
Indices: 121086792--121086834 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
121086782 AGAATAATTT
121086792 TATTTATATTTTCAAATGTAAA
1 TATTTATATTTTCAAAT-TAAA
*
121086814 TATTTA-ATTTTTAAATTAAA
1 TATTTATATTTTCAAATTAAA
121086834 T
1 T
121086835 TTACGTAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 9 0.45
22 6 0.30
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (21 bp):
TATTTATATTTTCAAATTAAA
Found at i:121087039 original size:16 final size:18
Alignment explanation
Indices: 121086993--121087040 Score: 87
Period size: 18 Copynumber: 2.6 Consensus size: 18
121086983 ATATCAACAT
121086993 TAATAAAATATATTTTAAC
1 TAAT-AAATATATTTTAAC
121087012 TAATAAATATATTTTAAC
1 TAATAAATATATTTTAAC
121087030 TAATAAATATA
1 TAATAAATATA
121087041 ATTAACTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 25 0.86
19 4 0.14
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (18 bp):
TAATAAATATATTTTAAC
Found at i:121087623 original size:29 final size:30
Alignment explanation
Indices: 121087568--121087627 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
121087558 AATTTGAATT
* *
121087568 AAAATTAAAGTTTGATGTATATAATTGTAC
1 AAAATTAAACTTTGATGTACATAATTGTAC
121087598 AAAATTAAACTTT-ATGTACA-AGATTGTAC
1 AAAATTAAACTTTGATGTACATA-ATTGTAC
121087627 A
1 A
121087628 TTGGATCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 1 0.04
29 14 0.52
30 12 0.44
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.37
Consensus pattern (30 bp):
AAAATTAAACTTTGATGTACATAATTGTAC
Found at i:121089035 original size:21 final size:21
Alignment explanation
Indices: 121089009--121089051 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
121088999 CTATTGTTTG
121089009 ATTTCTATTTTTATGCAATAA
1 ATTTCTATTTTTATGCAATAA
121089030 ATTTCTATTTTTATGCAATAA
1 ATTTCTATTTTTATGCAATAA
121089051 A
1 A
121089052 ATCTTAGTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTTCTATTTTTATGCAATAA
Found at i:121103494 original size:25 final size:25
Alignment explanation
Indices: 121103460--121103514 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
121103450 ATTTTCCACA
*
121103460 TGGCTTAGCACACAGGCATGTAACT
1 TGGCCTAGCACACAGGCATGTAACT
*
121103485 TGGCCTAGCACACGGGCATGTAACT
1 TGGCCTAGCACACAGGCATGTAACT
121103510 TGGCC
1 TGGCC
121103515 GTATGAGCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (25 bp):
TGGCCTAGCACACAGGCATGTAACT
Found at i:121105648 original size:60 final size:61
Alignment explanation
Indices: 121105574--121105704 Score: 174
Period size: 60 Copynumber: 2.2 Consensus size: 61
121105564 GGGGTGGCTT
* * *
121105574 AGGCCATGTTAGAGTCTAATAAATAGACACGAGTGTGCAGTCTAGCCAT-TGAGGAAGTCC
1 AGGCCGTGTTAGAGTCTAATAAATAGACACGAGTGTACAGTCTACCCATATGAGGAAGTCC
** * ** *
121105634 AGGCCGTGTTAGAGTCTGCTAAATAGACACGGGTGTATGGTCTACCCGTATGAGGAAGTCC
1 AGGCCGTGTTAGAGTCTAATAAATAGACACGAGTGTACAGTCTACCCATATGAGGAAGTCC
121105695 AGGCCGTGTT
1 AGGCCGTGTT
121105705 GATTTCCCAC
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
60 40 0.66
61 21 0.34
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (61 bp):
AGGCCGTGTTAGAGTCTAATAAATAGACACGAGTGTACAGTCTACCCATATGAGGAAGTCC
Found at i:121107740 original size:27 final size:27
Alignment explanation
Indices: 121107676--121107743 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 27
121107666 TGTAAAGCCT
121107676 AAAGATAAATTAAAAATAGTATTAAAGA
1 AAAGATAAA-TAAAAATAGTATTAAAGA
*
121107704 GAA-ATAAAATAAAAA-AGTAATTTAAA-A
1 AAAGAT-AAATAAAAATAGT-A-TTAAAGA
121107731 AAAGATAAATAAA
1 AAAGATAAATAAA
121107744 GATAAAAGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
26 3 0.09
27 19 0.56
28 12 0.35
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (27 bp):
AAAGATAAATAAAAATAGTATTAAAGA
Found at i:121109098 original size:29 final size:30
Alignment explanation
Indices: 121109066--121109122 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
121109056 ACCACGAATA
*
121109066 TAATTA-AACTAACAA-ATTCAACCAAAAAC
1 TAATTACAA-TAACAAGACTCAACCAAAAAC
*
121109095 TAATTACAATAATAAGACTCAACCAAAA
1 TAATTACAATAACAAGACTCAACCAAAA
121109123 GCAATCGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.58, C:0.19, G:0.02, T:0.21
Consensus pattern (30 bp):
TAATTACAATAACAAGACTCAACCAAAAAC
Found at i:121114535 original size:54 final size:54
Alignment explanation
Indices: 121114472--121114582 Score: 170
Period size: 54 Copynumber: 2.1 Consensus size: 54
121114462 AGAAATAGTG
* * * *
121114472 AGATGGGTGGTCGGAGTGGTTGTAGAA-AGGGGGAAAGGGAATTTAGGTTTGGCA
1 AGATGGGTGGCCGAAGTGATTGTAGAATA-GGGGAAAGGGAATTTAAGTTTGGCA
121114526 AGATGGGTGGCCGAAGTGATTGTAGAATAGGGGAAAGGGAATTTAAGTTTGGCA
1 AGATGGGTGGCCGAAGTGATTGTAGAATAGGGGAAAGGGAATTTAAGTTTGGCA
121114580 AGA
1 AGA
121114583 AGGATGAAGG
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 51 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.05, G:0.42, T:0.23
Consensus pattern (54 bp):
AGATGGGTGGCCGAAGTGATTGTAGAATAGGGGAAAGGGAATTTAAGTTTGGCA
Found at i:121115856 original size:20 final size:20
Alignment explanation
Indices: 121115831--121115893 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
121115821 ATTGTGTTTT
121115831 AAATAATAATTTCATGTAAA
1 AAATAATAATTTCATGTAAA
** ***
121115851 AAATAA-AATTATTGTGTTTT
1 AAATAATAATT-TCATGTAAA
121115871 AAATAATAATTTCATGTAAA
1 AAATAATAATTTCATGTAAA
121115891 AAA
1 AAA
121115894 ATAAAATTAT
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
19 4 0.13
20 23 0.74
21 4 0.13
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.38
Consensus pattern (20 bp):
AAATAATAATTTCATGTAAA
Found at i:121115868 original size:40 final size:41
Alignment explanation
Indices: 121115821--121115903 Score: 159
Period size: 40 Copynumber: 2.0 Consensus size: 41
121115811 TAATTTACAA
121115821 ATTGTGTTTTAAATAATAATTTCATGT-AAAAAATAAAATT
1 ATTGTGTTTTAAATAATAATTTCATGTAAAAAAATAAAATT
121115861 ATTGTGTTTTAAATAATAATTTCATGTAAAAAAATAAAATT
1 ATTGTGTTTTAAATAATAATTTCATGTAAAAAAATAAAATT
121115902 AT
1 AT
121115904 GTAACATGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 27 0.64
41 15 0.36
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.42
Consensus pattern (41 bp):
ATTGTGTTTTAAATAATAATTTCATGTAAAAAAATAAAATT
Found at i:121116821 original size:2 final size:2
Alignment explanation
Indices: 121116814--121116845 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
121116804 AACTAGATAG
121116814 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121116846 GTCCTGCCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121118024 original size:2 final size:2
Alignment explanation
Indices: 121118017--121118042 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
121118007 TTCTTTGTAA
121118017 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
121118043 TTCATGTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121120406 original size:14 final size:14
Alignment explanation
Indices: 121120389--121120415 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
121120379 TTTTTTTTTA
121120389 TTATATTTTAATTT
1 TTATATTTTAATTT
121120403 TTATATTTTAATT
1 TTATATTTTAATT
121120416 GTGAATGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATATTTTAATTT
Found at i:121125310 original size:129 final size:131
Alignment explanation
Indices: 121125145--121125420 Score: 346
Period size: 129 Copynumber: 2.1 Consensus size: 131
121125135 TTTTTTTTAA
* *
121125145 AAAATCCTTTAAAACGAAGACGAGATTCGATATTTGGCAA-TCCGTGGAATCGTGCCCTAACGTG
1 AAAATCCCTTAAAACGAAGACGAGATGCGATATTTGGCAACT-CGTGGAATCGTGCCCTAACGTG
*
121125209 TTGGGTT-GC-AATTTCGCGTTTGCCCAAAATAATCGAATATCACTTCAAATTTCACTCATGTCT
65 TT-GGTTGGCGAATTTCGCGTTTGCCCAAAATAATCAAATATCACTTCAAATTTCACTCATGTCT
121125272 TTT
129 TTT
*
121125275 AAAATCCCTT-AAACGAAGGCGATG-TGCGATATTTGGCAACTCGTGGAATCGTGCCCTAACGTG
1 AAAATCCCTTAAAACGAAGACGA-GATGCGATATTTGGCAACTCGTGGAATCGTGCCCTAACGTG
* ** * * * * *
121125338 TTGGTTGGCGAATTTCTCGTTTGCTTAAAATAATCAAATATCTCCTCAAAATTTCGCTCGTATCT
65 TTGGTTGGCGAATTTCGCGTTTGCCCAAAATAATCAAATATCACTTC-AAATTTCACTCATGTCT
*
121125403 TCTA
129 T-TT
*
121125407 AAAATCCTTTAAAA
1 AAAATCCCTTAAAA
121125421 TAAAGGCAAT
Statistics
Matches: 125, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
128 4 0.03
129 51 0.41
130 42 0.34
131 15 0.12
132 10 0.08
133 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (131 bp):
AAAATCCCTTAAAACGAAGACGAGATGCGATATTTGGCAACTCGTGGAATCGTGCCCTAACGTGT
TGGTTGGCGAATTTCGCGTTTGCCCAAAATAATCAAATATCACTTCAAATTTCACTCATGTCTTT
T
Found at i:121137414 original size:44 final size:44
Alignment explanation
Indices: 121137351--121138147 Score: 1000
Period size: 44 Copynumber: 18.2 Consensus size: 44
121137341 GGCGAATCCC
* *
121137351 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATC-AAGGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA-GATA
* * * *
121137395 GCAGATTTGACGTCTCTGTATTGTCAGAGGGCAGATAGAGGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
* *
121137439 GCAGATTTGGAGTTTCTGTATTGTCAGA-AGGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGA-GCAGATCGAAGATA
** *
121137483 ATAGATTTGGCGTCTCTGTATTGTCAGACAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
* *
121137527 GCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
* * * * *
121137571 GCGGGTTTGGTGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
121137615 GCAGATTT-GCGTCTCTGTATTGTCAGAG-GTCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAG-CAGATCGAAGATA
* * * *
121137658 GCAGATTTGGCGTC-CTGTATTGGCGGAAAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
* * * *
121137701 GCAGATTTGGCATCTCTGTATTGTCAAAGGGCAGATCGAGGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
* * * *
121137745 GCAGATTTGACGTCTCTGTATTGTCAGAGGGCAGATAGAGGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
* *
121137789 GCAGATTTGGAGTTTCTGTATTGTCAGA-AGGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGA-GCAGATCGAAGATA
** *
121137833 ATAGATTTGGCGTCTCTGTATTGTCAGATAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
* *
121137877 GCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
*
121137921 GCAGATTTGGTGTCTCTGTATTGTCAGAG-GTCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAG-CAGATCGAAGATA
* * * *
121137965 GCAGATTTGGCGTCTCTGTATCGGCGGAGAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
* *
121138009 GCAGATTTGGCATCTCTGTATTGTCAGAGGGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
* * * *
121138053 GCAGATTTGGCATCTCTGTGTTGACAGAGAGTAGATCGAAGAT-
1 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
* * *
121138096 GACAGATTTGGCATTTCTGTATTAG-CAGAGAGCAGATCGAAAATA
1 G-CAGATTTGGCGTCTCTGTATT-GTCAGAGAGCAGATCGAAGATA
*
121138141 ACAGATT
1 GCAGATT
121138148 GGTGTACCCG
Statistics
Matches: 655, Mismatches: 84, Indels: 28
0.85 0.11 0.04
Matches are distributed among these distances:
42 1 0.00
43 76 0.12
44 573 0.87
45 5 0.01
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (44 bp):
GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
Found at i:121138402 original size:17 final size:17
Alignment explanation
Indices: 121138361--121138394 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
121138351 CGGGCCCGAG
*
121138361 CAAACAAACAAAAAAAT
1 CAAAAAAACAAAAAAAT
121138378 CAAAAAAACAAACAAAA
1 CAAAAAAACAAA-AAAA
121138395 CAAGAAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.79, C:0.18, G:0.00, T:0.03
Consensus pattern (17 bp):
CAAAAAAACAAAAAAAT
Found at i:121141109 original size:130 final size:131
Alignment explanation
Indices: 121140894--121141141 Score: 342
Period size: 129 Copynumber: 1.9 Consensus size: 131
121140884 AGACGAGATT
121140894 CGATATTTGGCAATCCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCCCAAA
1 CGATATTTGGCAATCCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCCCAAA
* * * *
121140959 ATAATCGAATATCACTTC-AAATTTCACTCATGTCTT-TTAAAATCCCTTAAACGAAGGCGATGT
66 ATAATCAAATATCACCTCAAAATTTCACTCATATCTTCTAAAAATCCCTTAAACGAAGGCGATGT
121141022 G
131 G
* **
121141023 CGATATTTGGCAA-CTCGTGGAATCGTGCCCTAACGTGTT-GGTTGGCGAATTTCTCGTTTGCTT
1 CGATATTTGGCAATC-CGTGGAATCGTGCCCTAACGTGTTGGGTT-GC-AATTTCGCGTTTGCCC
* * * *
121141086 AAAATAATCAAATATCTCCTCAAAATTTCGCTCGTATCTTCTAAAAATCCTTTAAA
63 AAAATAATCAAATATCACCTCAAAATTTCACTCATATCTTCTAAAAATCCCTTAAA
121141142 ATGAAGGCAA
Statistics
Matches: 103, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
128 5 0.05
129 39 0.38
130 31 0.30
131 15 0.15
132 13 0.13
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (131 bp):
CGATATTTGGCAATCCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCCCAAA
ATAATCAAATATCACCTCAAAATTTCACTCATATCTTCTAAAAATCCCTTAAACGAAGGCGATGT
G
Found at i:121144875 original size:3 final size:3
Alignment explanation
Indices: 121144701--121144859 Score: 84
Period size: 3 Copynumber: 54.0 Consensus size: 3
121144691 AGATAGCAAA
* * * **
121144701 AAT AGT AAT AAT AAT AAA AAT AAC AAT AAT AAT AAAT AAT GCT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* * *
121144746 ATT AATT AAT AAT AA- AAT AAT AAGT AGAT AA- ACT CAA- AA- AAG AA-
1 AAT AA-T AAT AAT AAT AAT AAT AA-T A-AT AAT AAT -AAT AAT AAT AAT
* * * *
121144790 AAT -AT AAT CAT AAT AAA AAT AAT AGT GAT AAT AAT AAT AAT AGA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
*
121144834 AAT AAT AGT AAT AAT AA- AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
121144860 GGTATTAGAA
Statistics
Matches: 118, Mismatches: 24, Indels: 28
0.69 0.14 0.16
Matches are distributed among these distances:
2 15 0.13
3 90 0.76
4 12 0.10
5 1 0.01
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:121154723 original size:13 final size:14
Alignment explanation
Indices: 121154703--121154735 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
121154693 TATTTTAAAA
121154703 ATATTTAAAATATT
1 ATATTTAAAATATT
121154717 A-ATTTAAAATATT
1 ATATTTAAAATATT
121154730 ATATTT
1 ATATTT
121154736 TTCAATATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATATTTAAAATATT
Found at i:121154810 original size:38 final size:38
Alignment explanation
Indices: 121154768--121154847 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 38
121154758 ATTTATTTAT
121154768 ATTTATTCA-TATAATAAGCTA-TTAATATAATTAATATA
1 ATTTATT-ATTATAATAAGCTATTTAATAT-ATTAATATA
* * * *
121154806 ATTTATTATTTTAATAAGTTATTTAATATTTTAATTTA
1 ATTTATTATTATAATAAGCTATTTAATATATTAATATA
121154844 ATTT
1 ATTT
121154848 TAATAACGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
37 1 0.03
38 28 0.78
39 7 0.19
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (38 bp):
ATTTATTATTATAATAAGCTATTTAATATATTAATATA
Found at i:121158624 original size:58 final size:57
Alignment explanation
Indices: 121158492--121158626 Score: 191
Period size: 58 Copynumber: 2.3 Consensus size: 57
121158482 TTGAATTCAT
* *
121158492 ATAATAATTATATTAAGAATATTATTAAATTGTATATTATTTTATTAAATTATATTTA
1 ATAATAATTATATTAA-AATATGATTAAATTATATATTATTTTATTAAATTATATTTA
* * *
121158550 ATAATAATTATGTTAAAATATGATTAAATTATTTATTATTTTTATTAAATTATTTTTA
1 ATAATAATTATATTAAAATATGATTAAATTATATATTA-TTTTATTAAATTATATTTA
121158608 ATAATAATCT-TATTAAAAT
1 ATAATAAT-TATATTAAAAT
121158627 TTAATAATAA
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
57 19 0.28
58 49 0.71
59 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (57 bp):
ATAATAATTATATTAAAATATGATTAAATTATATATTATTTTATTAAATTATATTTA
Found at i:121158818 original size:16 final size:16
Alignment explanation
Indices: 121158797--121158867 Score: 115
Period size: 16 Copynumber: 4.4 Consensus size: 16
121158787 TGAATTACTG
*
121158797 ATTACAGCTCTATTTT
1 ATTACAGCTCTATTCT
121158813 ATTACAGCTCTATTCT
1 ATTACAGCTCTATTCT
*
121158829 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCT
*
121158845 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCT
121158861 ATTACAG
1 ATTACAG
121158868 TGAACCAAAC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (16 bp):
ATTACAGCTCTATTCT
Found at i:121160864 original size:3 final size:3
Alignment explanation
Indices: 121160856--121160888 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
121160846 AGGCTGTTAG
121160856 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
121160889 TTGTGGAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:121171020 original size:20 final size:18
Alignment explanation
Indices: 121170981--121171025 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
121170971 ACGTGATTTT
*
121170981 AACGAAATGAGATAAGAA
1 AACGAAACGAGATAAGAA
121170999 AACGAAACGATGATATAGAA
1 AACGAAACGA-GATA-AGAA
121171019 AACGAAA
1 AACGAAA
121171026 TGACGTATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 9 0.38
19 4 0.17
20 11 0.46
ACGTcount: A:0.60, C:0.09, G:0.20, T:0.11
Consensus pattern (18 bp):
AACGAAACGAGATAAGAA
Found at i:121171846 original size:20 final size:20
Alignment explanation
Indices: 121171809--121171882 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 20
121171799 TCTCATTTTT
*
121171809 TATTTGTTTTTTTATTTTAA
1 TATTTGTTTTTATATTTTAA
*
121171829 TATTTGTTTTTATGTTTTTAAA
1 TATTTGTTTTTAT-ATTTT-AA
121171851 TGTATTTGATTTATTATATTTTAA
1 --TATTTG-TTT-TTATATTTTAA
121171875 -ATTT-TTTT
1 TATTTGTTTT
121171883 ATTTAATAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 14
0.73 0.05 0.23
Matches are distributed among these distances:
18 1 0.02
19 3 0.07
20 12 0.27
21 8 0.18
22 2 0.04
24 8 0.18
25 7 0.16
26 4 0.09
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (20 bp):
TATTTGTTTTTATATTTTAA
Found at i:121172282 original size:26 final size:24
Alignment explanation
Indices: 121172252--121172301 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
121172242 AAATAAAAAA
*
121172252 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
121172278 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
121172302 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:121172621 original size:21 final size:21
Alignment explanation
Indices: 121172579--121172624 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
121172569 AAGATAGATG
* *
121172579 AATAGATAATAAAAAAATAAT
1 AATAGATAACAAAAAAACAAT
* *
121172600 AATAGATAACAAAATACCAAT
1 AATAGATAACAAAAAAACAAT
121172621 AATA
1 AATA
121172625 ATGAAGGCAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.67, C:0.07, G:0.04, T:0.22
Consensus pattern (21 bp):
AATAGATAACAAAAAAACAAT
Found at i:121172684 original size:18 final size:17
Alignment explanation
Indices: 121172635--121172685 Score: 93
Period size: 17 Copynumber: 2.9 Consensus size: 17
121172625 ATGAAGGCAT
121172635 AAATGAAAGAAAATAAA
1 AAATGAAAGAAAATAAA
121172652 AAATGAAAGAAAATAAA
1 AAATGAAAGAAAATAAA
121172669 AAATGAAAGAATAATAA
1 AAATGAAAGAA-AATAA
121172686 GTGAATACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 28 0.85
18 5 0.15
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.14
Consensus pattern (17 bp):
AAATGAAAGAAAATAAA
Found at i:121173553 original size:14 final size:14
Alignment explanation
Indices: 121173536--121173567 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
121173526 AACATAATCG
121173536 AAAAAAAGAAAAAT
1 AAAAAAAGAAAAAT
*
121173550 AAAAAAATAAAAAT
1 AAAAAAAGAAAAAT
121173564 AAAA
1 AAAA
121173568 CTACCTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.03, T:0.09
Consensus pattern (14 bp):
AAAAAAAGAAAAAT
Found at i:121180046 original size:25 final size:27
Alignment explanation
Indices: 121180018--121180073 Score: 98
Period size: 26 Copynumber: 2.1 Consensus size: 27
121180008 CACAAAAAAG
121180018 TTCAAAATGTC-CCCAAAAATTTTAA-
1 TTCAAAATGTCACCCAAAAATTTTAAC
121180043 TTCAAAATGTCACCCAAAAATTTTAAC
1 TTCAAAATGTCACCCAAAAATTTTAAC
121180070 TTCA
1 TTCA
121180074 TAAAAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 11 0.38
26 14 0.48
27 4 0.14
ACGTcount: A:0.43, C:0.21, G:0.04, T:0.32
Consensus pattern (27 bp):
TTCAAAATGTCACCCAAAAATTTTAAC
Found at i:121182878 original size:2 final size:2
Alignment explanation
Indices: 121182871--121182898 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
121182861 ATTTTTACCA
121182871 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121182899 CTTGTAACAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121184990 original size:26 final size:26
Alignment explanation
Indices: 121184954--121185006 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
121184944 AAGTGATAAG
121184954 TAATAGCTTCGGCTACACTTATCTGA
1 TAATAGCTTCGGCTACACTTATCTGA
121184980 TAATAGCTTCGGCTACACTTATCTGA
1 TAATAGCTTCGGCTACACTTATCTGA
121185006 T
1 T
121185007 CAAGGAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (26 bp):
TAATAGCTTCGGCTACACTTATCTGA
Found at i:121185046 original size:76 final size:76
Alignment explanation
Indices: 121184906--121185056 Score: 259
Period size: 76 Copynumber: 2.0 Consensus size: 76
121184896 GAGATAAGTG
*
121184906 ATAGCTTCGGCTACACTTATCTGATCAAGGATAAATGAAAGTGATAAGTAATAGCTTCGGCTACA
1 ATAGCTTCGGCTACACTTATCTGATCAAGGATAAATGAAAGTGATAAGTAATAGCTTCGACTACA
121184971 CTTATCTGATA
66 CTTATCTGATA
* *
121184982 ATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTGAAAGTGATAAGTGATAGTTTCGACTAC
1 ATAGCTTCGGCTACACTTATCTGATCAAGGATAAA-TGAAAGTGATAAGTAATAGCTTCGACTAC
121185046 ACTTATCTGAT
65 ACTTATCTGAT
121185057 CAATGACAAA
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
75 3 0.04
76 68 0.96
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (76 bp):
ATAGCTTCGGCTACACTTATCTGATCAAGGATAAATGAAAGTGATAAGTAATAGCTTCGACTACA
CTTATCTGATA
Found at i:121185050 original size:50 final size:51
Alignment explanation
Indices: 121184982--121185090 Score: 150
Period size: 50 Copynumber: 2.2 Consensus size: 51
121184972 TTATCTGATA
* *
121184982 ATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTGA-AAGTGATAAGTG
1 ATAGCTTCGACTACACTTATCTGATCAAGGACAAA-TGACAAGTGAAAAGTG
* *
121185032 ATAGTTTCGACTACACTTATCTGATCAATGACAAATGACAAGTGAAAAGTG
1 ATAGCTTCGACTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTG
*
121185083 GTAGCTTC
1 ATAGCTTC
121185091 AGCTACCTGA
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
50 31 0.61
51 20 0.39
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.28
Consensus pattern (51 bp):
ATAGCTTCGACTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTG
Found at i:121185110 original size:31 final size:31
Alignment explanation
Indices: 121185072--121185189 Score: 191
Period size: 31 Copynumber: 3.8 Consensus size: 31
121185062 ACAAATGACA
* *
121185072 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
121185103 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
121185134 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
121185165 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
121185190 AAGTGACAAG
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 81 1.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:121185200 original size:7 final size:7
Alignment explanation
Indices: 121185188--121185216 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
121185178 AGCTTCGGCT
121185188 ACAAGTG
1 ACAAGTG
121185195 ACAAGTG
1 ACAAGTG
121185202 ACAAGTG
1 ACAAGTG
121185209 ACAAGTG
1 ACAAGTG
121185216 A
1 A
121185217 TTTCCGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:121185291 original size:47 final size:46
Alignment explanation
Indices: 121185221--121185344 Score: 167
Period size: 47 Copynumber: 2.7 Consensus size: 46
121185211 AAGTGATTTC
* *
121185221 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
121185267 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
121185314 CGTGTAAGACCATAGCTGGGCTATGGCATCG
1 CGTATAAGACCATATCTGGGATATGGCATCG
121185345 ATATATGAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 27 0.40
47 41 0.60
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:121185373 original size:42 final size:42
Alignment explanation
Indices: 121185315--121185424 Score: 211
Period size: 42 Copynumber: 2.6 Consensus size: 42
121185305 TATGTGATTC
121185315 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
*
121185357 GTGTAAGACCATAGCTGGGCTATGACATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
121185399 GTGTAAGACCATAGCTGGGCTATGGC
1 GTGTAAGACCATAGCTGGGCTATGGC
121185425 TGTGAAGATG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 66 1.00
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
Found at i:121185457 original size:35 final size:35
Alignment explanation
Indices: 121185392--121185459 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
121185382 CATCGATATA
* **
121185392 TGAATATGTGTAAGACCATAGCTGGGCTATGGCTG
1 TGAAGATGTGTAAGACCATAGCTGAACTATGGCTG
*
121185427 TGAAGATGTGTAAGACCATAGTTGAACTATGGC
1 TGAAGATGTGTAAGACCATAGCTGAACTATGGC
121185460 ATCGAGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.28
Consensus pattern (35 bp):
TGAAGATGTGTAAGACCATAGCTGAACTATGGCTG
Found at i:121188636 original size:157 final size:159
Alignment explanation
Indices: 121188464--121188761 Score: 402
Period size: 158 Copynumber: 1.9 Consensus size: 159
121188454 AAAATGACTT
* *
121188464 AAAAAAAACTGACATTGCGAAACTGGTGTTAAATCCATTGCTGAAA-TAAGAAATTCTAGAATGA
1 AAAAAAAAATGACATTGCGAAACTGGTGTTAAATCCATTGCTCAAATTAAGAAATTCTAGAATGA
** ** *
121188528 GGTTGTTTAGGGATAGGTTTAAAGGTGTTGTATAAATTGTACAAAATAGGC-AACTCGCAATAAA
66 GGTTGTTTAGGGATAGCATTAAAGGCATTGTATAAATTGTACAAAATAGGCAAACTCACAATAAA
121188592 ATTGGTATGACCATATCGTGATTTTTAAA
131 ATTGGTATGACCATATCGTGATTTTTAAA
* ** ****
121188621 AAAAAAAAATGACATTGCTAAACTGGTGTTAAATTGATTGCTCAAATTTCTTAATTCTAGAATGA
1 AAAAAAAAATGACATTGCGAAACTGGTGTTAAATCCATTGCTCAAATTAAGAAATTCTAGAATGA
* * * * *
121188686 GGTTGTTTAGGGATAGCATTAAAGGCATTGTATAGATTGTATAAATTAGTCAAACTCACAGTAAA
66 GGTTGTTTAGGGATAGCATTAAAGGCATTGTATAAATTGTACAAAATAGGCAAACTCACAATAAA
*
121188751 ATTGTTATGAC
131 ATTGGTATGAC
121188762 TGGATAGCAA
Statistics
Matches: 119, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
157 41 0.34
158 57 0.48
159 21 0.18
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.32
Consensus pattern (159 bp):
AAAAAAAAATGACATTGCGAAACTGGTGTTAAATCCATTGCTCAAATTAAGAAATTCTAGAATGA
GGTTGTTTAGGGATAGCATTAAAGGCATTGTATAAATTGTACAAAATAGGCAAACTCACAATAAA
ATTGGTATGACCATATCGTGATTTTTAAA
Found at i:121189939 original size:18 final size:19
Alignment explanation
Indices: 121189902--121189939 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
121189892 TTTTATATAT
121189902 TTTTAAAAACATTATTAAA
1 TTTTAAAAACATTATTAAA
* *
121189921 TTTTATAAA-ATTGTTAAA
1 TTTTAAAAACATTATTAAA
121189939 T
1 T
121189940 GATATTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (19 bp):
TTTTAAAAACATTATTAAA
Found at i:121202360 original size:20 final size:22
Alignment explanation
Indices: 121202320--121202362 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
121202310 TAGGAGAGCG
121202320 AAACGAATGAGAAACGGGCCAA
1 AAACGAATGAGAAACGGGCCAA
*
121202342 AAACGAA-GA-AAATGGGCCAA
1 AAACGAATGAGAAACGGGCCAA
121202362 A
1 A
121202363 GTACGAGATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
21 2 0.10
22 7 0.35
ACGTcount: A:0.53, C:0.16, G:0.26, T:0.05
Consensus pattern (22 bp):
AAACGAATGAGAAACGGGCCAA
Found at i:121207027 original size:6 final size:6
Alignment explanation
Indices: 121207018--121207051 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
121207008 TATGTCTTTC
121207018 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
121207052 GATAAGAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:121207522 original size:6 final size:6
Alignment explanation
Indices: 121207513--121207552 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
121207503 TATGTCTTTC
121207513 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
121207553 GATAAAAGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:121207559 original size:8 final size:7
Alignment explanation
Indices: 121207513--121207559 Score: 50
Period size: 6 Copynumber: 7.3 Consensus size: 7
121207503 TATGTCTTTC
121207513 AAAAT-A
1 AAAATAA
121207519 AAAAT-A
1 AAAATAA
121207525 AAAAT-A
1 AAAATAA
121207531 AAAAT-A
1 AAAATAA
121207537 AAAAT-A
1 AAAATAA
121207543 AAAATAA
1 AAAATAA
121207550 AAAGATAA
1 AAA-ATAA
121207558 AA
1 AA
121207560 GGATTCAATG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 29 0.74
7 4 0.10
8 6 0.15
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (7 bp):
AAAATAA
Found at i:121214353 original size:18 final size:18
Alignment explanation
Indices: 121214332--121214374 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
121214322 CCTTTCCCCC
*
121214332 TTCTTTCATTTGTTTATT
1 TTCTTTCATTTATTTATT
121214350 TTCTTTCATTTATTTATT
1 TTCTTTCATTTATTTATT
*
121214368 TGCTTTC
1 TTCTTTC
121214375 TTTTTATGCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.12, C:0.14, G:0.05, T:0.70
Consensus pattern (18 bp):
TTCTTTCATTTATTTATT
Found at i:121215513 original size:20 final size:19
Alignment explanation
Indices: 121215478--121215530 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
121215468 TGTAACTTTT
*
121215478 TATTTATTA-TTTTTTTATTA
1 TATTT-TTAGTTTTTTGA-TA
121215498 TACTTTTTAGTTTTTTGATA
1 TA-TTTTTAGTTTTTTGATA
*
121215518 TATTTTTTGTTTT
1 TATTTTTAGTTTT
121215531 GGTCAGAAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 10 0.34
20 9 0.31
21 10 0.34
ACGTcount: A:0.19, C:0.02, G:0.06, T:0.74
Consensus pattern (19 bp):
TATTTTTAGTTTTTTGATA
Found at i:121226563 original size:25 final size:25
Alignment explanation
Indices: 121226513--121226563 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
121226503 CCCTTATAAT
* * *
121226513 GTGAAAATGACCTTTTTGCCCTTAG
1 GTGAAAATGACCTTTATACCCCTAG
121226538 GTGAAAATGA-CTATTATACCCCTAG
1 GTGAAAATGACCT-TTATACCCCTAG
121226563 G
1 G
121226564 GTTATGTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (25 bp):
GTGAAAATGACCTTTATACCCCTAG
Found at i:121226622 original size:10 final size:10
Alignment explanation
Indices: 121226607--121226641 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
121226597 TTTGTACATA
121226607 ATATGCCATG
1 ATATGCCATG
121226617 ATATGCACATG
1 ATATGC-CATG
121226628 ATATGCCATG
1 ATATGCCATG
121226638 ATAT
1 ATAT
121226642 ATACATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:121226626 original size:21 final size:21
Alignment explanation
Indices: 121226602--121226641 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
121226592 ACTGATTTGT
121226602 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
121226623 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
121226642 ATACATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:121226647 original size:21 final size:20
Alignment explanation
Indices: 121226601--121226652 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
121226591 TACTGATTTG
*
121226601 TACATAATATGCCATGATATG
1 TACAT-ATATGCCATGATATA
*
121226622 CACATGATATGCCATGATATA
1 TACAT-ATATGCCATGATATA
121226643 TACATATATG
1 TACATATATG
121226653 GATGGGTTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 5 0.19
21 22 0.81
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (20 bp):
TACATATATGCCATGATATA
Found at i:121226740 original size:25 final size:25
Alignment explanation
Indices: 121226687--121226756 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
121226677 GAGGAAGTAC
* * * *
121226687 AAAAGTGCTATGCCCTAGTTTACCG
1 AAAAGAGCTTTGCCCCAGTTTACCA
* *
121226712 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGAGCTTTGCCCCAGTTTACCA
*
121226737 AAAAGAGCTTTACCCCAGTT
1 AAAAGAGCTTTGCCCCAGTT
121226757 ATTAAAAGTG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (25 bp):
AAAAGAGCTTTGCCCCAGTTTACCA
Found at i:121234357 original size:24 final size:25
Alignment explanation
Indices: 121234281--121234343 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
121234271 GAGGAAGTGC
* * * *
121234281 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
121234306 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
121234331 AAAAGGGCTTTGC
1 AAAAGGGCTTTGC
121234344 TTCAGTTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:121235482 original size:47 final size:47
Alignment explanation
Indices: 121235417--121235538 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
121235407 ATCCATAAGT
* *
121235417 GAACTCGGACTCAACTCAATGAGTTCGGATGTCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* *
121235464 GAACTCGGACTCAGCTCAACGAGTTTGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
121235511 GAACTCGGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGTTCGG
121235539 GCATTCGCAT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:121235570 original size:46 final size:49
Alignment explanation
Indices: 121235363--121235585 Score: 195
Period size: 47 Copynumber: 4.8 Consensus size: 49
121235353 TGTAACCCGC
* * *
121235363 CCATAAGCGAACTCGGACTCAACTGAACGAGCTCGG-G-C--GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCCTAGTT-ACAT
* * *
121235409 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGTCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-GCCTAGTTACAT
* * *
121235459 -C-TCA-CGAACTCGGACTCAGCTCAACGAGTTTGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-GCCTAGTTACAT
* *
121235506 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGG-G-C-A-TTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCCTAGTT-ACAT
* *
121235549 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
121235586 TGCCCAAATA
Statistics
Matches: 150, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
44 2 0.01
45 3 0.02
46 59 0.39
47 69 0.46
48 3 0.02
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCCTAGTTACAT
Found at i:121239223 original size:6 final size:6
Alignment explanation
Indices: 121239212--121239237 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
121239202 CAACTTTCTC
121239212 ATACAT ATACAT ATACAT ATACAT AT
1 ATACAT ATACAT ATACAT ATACAT AT
121239238 GACACAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (6 bp):
ATACAT
Found at i:121241395 original size:46 final size:46
Alignment explanation
Indices: 121241328--121241596 Score: 179
Period size: 46 Copynumber: 5.8 Consensus size: 46
121241318 TATAACCCGC
* * *
121241328 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGCGAACTCAAACTCAACTCAACGAGTTCGGACGTTCGTAT
* * * * *
121241374 CCATAAGTGAACTCAAACTCAACTCAATGAGTTCGGATGACTAGT-T
1 CCATAAGCGAACTCAAACTCAACTCAACGAGTTCGGACG-TTCGTAT
* * * * *
121241420 ACATCTCA-CGAACTCAGACTCAACTCAATGAGTTCGGACATTCGTAT
1 CCA--TAAGCGAACTCAAACTCAACTCAACGAGTTCGGACGTTCGTAT
* * * *
121241467 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGATG-CCG-AGTT
1 CCATAAGCGAACTCAAACTCAACTCAACGAGTTCGGACGTTCGTA--T
* * * *** * *
121241513 ACATCTCA-CAAACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGCGAACTCAAACTCAACTCAACGAGTTCGGACGTTCGTAT
* ***
121241560 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCAAACTCAACTCAACGAGTTCGGA
121241597 TGCCCAAATA
Statistics
Matches: 173, Mismatches: 38, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
44 1 0.01
45 6 0.03
46 96 0.55
47 63 0.36
48 6 0.03
49 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGCGAACTCAAACTCAACTCAACGAGTTCGGACGTTCGTAT
Found at i:121241441 original size:47 final size:47
Alignment explanation
Indices: 121241382--121241550 Score: 157
Period size: 47 Copynumber: 3.6 Consensus size: 47
121241372 ATCCATAAGT
* *
121241382 GAACTCAAACTCAACTCAATGAGTTCGGATGACTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGACTAGTTACATCTCAC
* * * * * * *
121241429 GAACTCAGACTCAACTCAATGAGTTCGGA-CATTCGTATCCA--TAAGT
1 GAACTCAGACTCAACTCAACGAGTTCGGATGACTAGT-TACATCTCA-C
* *
121241475 GAACTC-GAACTCAACTCAACGAGTTCGGATGCCGAGTTACATCTCAC
1 GAACTCAG-ACTCAACTCAACGAGTTCGGATGACTAGTTACATCTCAC
* **
121241522 AAACTTGGACTCAACTCAACGAGTTCGGA
1 GAACTCAGACTCAACTCAACGAGTTCGGA
121241551 CATTCGCATC
Statistics
Matches: 97, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
45 3 0.03
46 33 0.34
47 58 0.60
48 3 0.03
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGTTCGGATGACTAGTTACATCTCAC
Found at i:121241599 original size:93 final size:93
Alignment explanation
Indices: 121241344--121241600 Score: 388
Period size: 93 Copynumber: 2.8 Consensus size: 93
121241334 GCGAACTCGA
* * * * *
121241344 ACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCAAACTCAACTCAATGAGTTCG
1 ACTCAACTCAACGAGTTCGGACATTCGTATCCATAAGTGAACTCGAACTCAACTCAACGAGTTCG
* * *
121241409 GATGACTAGTTACATCTCACGAACTCAG
66 GATGCCGAGTTACATCTCACAAACTCAG
*
121241437 ACTCAACTCAATGAGTTCGGACATTCGTATCCATAAGTGAACTCGAACTCAACTCAACGAGTTCG
1 ACTCAACTCAACGAGTTCGGACATTCGTATCCATAAGTGAACTCGAACTCAACTCAACGAGTTCG
**
121241502 GATGCCGAGTTACATCTCACAAACTTGG
66 GATGCCGAGTTACATCTCACAAACTCAG
* * *
121241530 ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCAACGAGTTCG
1 ACTCAACTCAACGAGTTCGGACATTCGTATCCATAAGTGAACTCGAACTCAACTCAACGAGTTCG
121241595 GATGCC
66 GATGCC
121241601 CAAATATCCT
Statistics
Matches: 149, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 149 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (93 bp):
ACTCAACTCAACGAGTTCGGACATTCGTATCCATAAGTGAACTCGAACTCAACTCAACGAGTTCG
GATGCCGAGTTACATCTCACAAACTCAG
Found at i:121244983 original size:30 final size:31
Alignment explanation
Indices: 121244917--121245006 Score: 164
Period size: 30 Copynumber: 2.9 Consensus size: 31
121244907 CCTTTTCATA
*
121244917 TTTCATATTTCATAATACTGGGCCGAAGCAT
1 TTTCATATTTCATATTACTGGGCCGAAGCAT
121244948 TTTCATATTTCATATTACTGGGCCGAAGC-T
1 TTTCATATTTCATATTACTGGGCCGAAGCAT
121244978 TTTCATATTTCATATTACTGGGCCGAAGC
1 TTTCATATTTCATATTACTGGGCCGAAGC
121245007 CTTTACTGTA
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 30 0.52
31 28 0.48
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCAT
Found at i:121245280 original size:47 final size:48
Alignment explanation
Indices: 121245201--121245319 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
121245191 GCTTTATCAT
*
121245201 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
121245250 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
121245297 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
121245320 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:121245320 original size:24 final size:24
Alignment explanation
Indices: 121245201--121245319 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
121245191 GCTTTATCAT
*
121245201 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
121245226 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
121245250 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
121245273 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
121245297 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
121245320 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:121245390 original size:9 final size:9
Alignment explanation
Indices: 121245376--121245452 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
121245366 ATCTCGTGTG
121245376 CATATCATA
1 CATATCATA
*
121245385 CATATCATGTG
1 CATATCA--TA
121245396 CATATCATA
1 CATATCATA
* * *
121245405 CGTGTCATGTG
1 CATATCA--TA
121245416 CATATCATA
1 CATATCATA
*
121245425 CATATCATGTG
1 CATATCA--TA
121245436 CATATCATA
1 CATATCATA
121245445 CATATCAT
1 CATATCAT
121245453 GTTTATCAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 30 0.58
11 22 0.42
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:121245395 original size:20 final size:20
Alignment explanation
Indices: 121245372--121245454 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
121245362 GAACATCTCG
121245372 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
* *
121245392 TGTGCATATCATACGTGTCA
1 TGTGCATATCATACATATCA
121245412 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
121245432 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
121245452 TGT
1 TGT
121245455 TTATCAAAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:121245401 original size:11 final size:11
Alignment explanation
Indices: 121245372--121245443 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
121245362 GAACATCTCG
121245372 TGTGCATATCA
1 TGTGCATATCA
*
121245383 --TACATATCA
1 TGTGCATATCA
121245392 TGTGCATATCA
1 TGTGCATATCA
* * *
121245403 --TACGTGTCA
1 TGTGCATATCA
121245412 TGTGCATATCA
1 TGTGCATATCA
*
121245423 --TACATATCA
1 TGTGCATATCA
121245432 TGTGCATATCA
1 TGTGCATATCA
121245443 T
1 T
121245444 ACATATCATG
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
9 22 0.49
11 23 0.51
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:121245519 original size:25 final size:25
Alignment explanation
Indices: 121245491--121245538 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
121245481 ATGTATAAAC
* * *
121245491 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
121245516 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
121245539 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:121246754 original size:27 final size:27
Alignment explanation
Indices: 121246692--121246756 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
121246682 GGGCATATTC
121246692 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
121246719 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
121246746 GTCTTTTTACC
1 GTCATTTTACC
121246757 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:121246901 original size:27 final size:26
Alignment explanation
Indices: 121246818--121246982 Score: 91
Period size: 27 Copynumber: 6.2 Consensus size: 26
121246808 ACAAACCAAA
* * *
121246818 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCTGTAA-TTTGTAAATCAAG
* *
121246845 GGTA-TTCTATAATTTTTAAAAGTCAAG
1 GGTATTTCTGTAATTTGT-AAA-TCAAG
*
121246872 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCTGTAA-TTTGTAAATCAAG
* ** **
121246899 GGTATTT-TGGTATTTTACAAATTGAG
1 GGTATTTCT-GTAATTTGTAAATCAAG
* **
121246925 GGTATTTCGGTAATTTTGTAAATTGAG
1 GGTATTTCTGTAA-TTTGTAAATCAAG
*** *
121246952 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCTGTAATT-TGTAAATCAAG
121246979 GGTA
1 GGTA
121246983 AAACAATAAT
Statistics
Matches: 106, Mismatches: 24, Indels: 16
0.73 0.16 0.11
Matches are distributed among these distances:
25 4 0.04
26 30 0.28
27 58 0.55
28 10 0.09
29 4 0.04
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (26 bp):
GGTATTTCTGTAATTTGTAAATCAAG
Found at i:121246983 original size:27 final size:27
Alignment explanation
Indices: 121246932--121247188 Score: 340
Period size: 27 Copynumber: 9.6 Consensus size: 27
121246922 GAGGGTATTT
* *
121246932 CGGTAATTTTGTAAATTGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
121246959 CAGTAATTCTGTAAATCAAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
** *
121246986 CAATAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
121247013 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
121247040 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
121247067 CGATAATTATGTAAATC-AGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
121247093 CGGTAATTATGTAAATTG-GGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
121247119 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
121247146 CGATAATTATGTAAATC-AGGGGTAAAA
1 CGGTAATTCTGTAAATCGA-GGGTAAAA
*
121247173 CGGTAATTATGTAAAT
1 CGGTAATTCTGTAAAT
121247189 TAGGGGTATT
Statistics
Matches: 204, Mismatches: 23, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
26 48 0.24
27 156 0.76
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
CGGTAATTCTGTAAATCGAGGGTAAAA
Found at i:121247153 original size:106 final size:107
Alignment explanation
Indices: 121246935--121247193 Score: 344
Period size: 106 Copynumber: 2.4 Consensus size: 107
121246925 GGTATTTCGG
* * * *
121246935 TAATTTTGTAAATTGAGGGTAAAAC-AGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTATA
1 TAATTATGTAAATCGAGGGTAAAACGA-TAATTATGTAAATC-AGGGTAAAACAATAATTATATA
*
121246999 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGG
64 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA
* * ** *
121247043 TAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGTAAAACGGTAATTATGTAAA
1 TAATTATGTAAATCGAGGGTAAAACGATAATTATGTAAATCAGGGTAAAACAATAATTATATAAA
* *
121247108 TTG-GGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGA
66 TCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA
* *
121247149 TAATTATGTAAATC-AGGGGTAAAACGGTAATTATGTAAATTAGGG
1 TAATTATGTAAATCGA-GGGTAAAACGATAATTATGTAAATCAGGG
121247194 GTATTTTGGT
Statistics
Matches: 134, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
105 1 0.01
106 75 0.56
107 22 0.16
108 35 0.26
109 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (107 bp):
TAATTATGTAAATCGAGGGTAAAACGATAATTATGTAAATCAGGGTAAAACAATAATTATATAAA
TCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA
Found at i:121250075 original size:31 final size:31
Alignment explanation
Indices: 121250008--121250100 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
121249998 CCTTTTCATA
*
121250008 TTTCATATTTCATAATACTGGGCCGAAG-C-
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
121250037 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
121250068 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
121250099 TT
1 TT
121250101 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
29 27 0.44
30 1 0.02
31 33 0.54
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:121250370 original size:47 final size:48
Alignment explanation
Indices: 121250291--121250409 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
121250281 GCTTTATCAT
*
121250291 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
121250340 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
121250387 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
121250410 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:121250410 original size:24 final size:24
Alignment explanation
Indices: 121250291--121250409 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
121250281 GCTTTATCAT
*
121250291 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
121250316 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
121250340 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
121250363 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
121250387 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
121250410 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:121250480 original size:9 final size:9
Alignment explanation
Indices: 121250466--121250542 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
121250456 ATCTCGTGTG
121250466 CATATCATA
1 CATATCATA
*
121250475 CATATCATGTG
1 CATATCA--TA
121250486 CATATCATA
1 CATATCATA
* *
121250495 CATGTCATGTG
1 CATATCA--TA
121250506 CATATCATA
1 CATATCATA
*
121250515 CATATCATGTG
1 CATATCA--TA
121250526 CATATCATA
1 CATATCATA
121250535 CATATCAT
1 CATATCAT
121250543 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:121250485 original size:20 final size:20
Alignment explanation
Indices: 121250462--121250544 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
121250452 GAACATCTCG
121250462 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
121250482 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
121250502 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
121250522 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
121250542 TGT
1 TGT
121250545 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:121250491 original size:11 final size:11
Alignment explanation
Indices: 121250462--121250533 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
121250452 GAACATCTCG
121250462 TGTGCATATCA
1 TGTGCATATCA
*
121250473 --TACATATCA
1 TGTGCATATCA
121250482 TGTGCATATCA
1 TGTGCATATCA
* *
121250493 --TACATGTCA
1 TGTGCATATCA
121250502 TGTGCATATCA
1 TGTGCATATCA
*
121250513 --TACATATCA
1 TGTGCATATCA
121250522 TGTGCATATCA
1 TGTGCATATCA
121250533 T
1 T
121250534 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:121250607 original size:25 final size:25
Alignment explanation
Indices: 121250579--121250626 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
121250569 TCATATAAAC
* * *
121250579 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
121250604 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
121250627 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:121251846 original size:27 final size:27
Alignment explanation
Indices: 121251784--121251848 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
121251774 GGGCATATTC
121251784 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
121251811 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
121251838 GTCTTTTTACC
1 GTCATTTTACC
121251849 TTAGGGGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:121251991 original size:27 final size:26
Alignment explanation
Indices: 121251908--121252072 Score: 91
Period size: 27 Copynumber: 6.2 Consensus size: 26
121251898 ACAAACCAAA
* * *
121251908 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCTGTAA-TTTGTAAATCAAG
* *
121251935 GGTA-TTCTATAATTTTTAAAAGTCAAG
1 GGTATTTCTGTAATTTGT-AAA-TCAAG
*
121251962 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCTGTAA-TTTGTAAATCAAG
* ** **
121251989 GGTATTT-TGGTATTTTACAAATTGAG
1 GGTATTTCT-GTAATTTGTAAATCAAG
* **
121252015 GGTATTTCGGTAATTTTGTAAATTGAG
1 GGTATTTCTGTAA-TTTGTAAATCAAG
*** *
121252042 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCTGTAATT-TGTAAATCAAG
121252069 GGTA
1 GGTA
121252073 AAACAATAAT
Statistics
Matches: 106, Mismatches: 24, Indels: 16
0.73 0.16 0.11
Matches are distributed among these distances:
25 4 0.04
26 30 0.28
27 58 0.55
28 10 0.09
29 4 0.04
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (26 bp):
GGTATTTCTGTAATTTGTAAATCAAG
Found at i:121252073 original size:27 final size:27
Alignment explanation
Indices: 121252022--121252280 Score: 333
Period size: 27 Copynumber: 9.6 Consensus size: 27
121252012 GAGGGTATTT
* *
121252022 CGGTAATTTTGTAAATTGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
121252049 CAGTAATTCTGTAAATCAAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
** *
121252076 CAATAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
121252103 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
121252130 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
121252157 CGATAATTATGTAAATC-AGGGGTAAAA
1 CGGTAATTCTGTAAATCGA-GGGTAAAA
* * *
121252184 CGGTAATTATGTAAATTGTGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
121252211 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
121252238 CGATAATTATGTAAATC-AGGGGTAAAA
1 CGGTAATTCTGTAAATCGA-GGGTAAAA
*
121252265 CGGTAATTATGTAAAT
1 CGGTAATTCTGTAAAT
121252281 TAGGGGTATT
Statistics
Matches: 204, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
26 2 0.01
27 202 0.99
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
CGGTAATTCTGTAAATCGAGGGTAAAA
Found at i:121252305 original size:81 final size:81
Alignment explanation
Indices: 121252022--121252285 Score: 415
Period size: 81 Copynumber: 3.3 Consensus size: 81
121252012 GAGGGTATTT
* * * * * * *
121252022 CGGTAATTTTGTAAATTGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTA
1 CGGTAATTATGTAAATTGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATG
121252087 TAAATC-GAGGGTAAAA
66 TAAATCAG-GGGTAAAA
* *
121252103 CGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATG
1 CGGTAATTATGTAAATTGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATG
121252168 TAAATCAGGGGTAAAA
66 TAAATCAGGGGTAAAA
*
121252184 CGGTAATTATGTAAATTGTGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATG
1 CGGTAATTATGTAAATTGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATG
121252249 TAAATCAGGGGTAAAA
66 TAAATCAGGGGTAAAA
121252265 CGGTAATTATGTAAATT-AGGG
1 CGGTAATTATGTAAATTGAGGG
121252286 GTATTTTGGT
Statistics
Matches: 170, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
80 3 0.02
81 166 0.98
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.28
Consensus pattern (81 bp):
CGGTAATTATGTAAATTGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATG
TAAATCAGGGGTAAAA
Found at i:121253714 original size:52 final size:52
Alignment explanation
Indices: 121253652--121253756 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
121253642 GAAGCCAAAG
*
121253652 TCACCATCAAGATTGAAGATCTCCCCTCAATTTCCCTTCAGGAGTTTTGGGT
1 TCACCATCAAGACTGAAGATCTCCCCTCAATTTCCCTTCAGGAGTTTTGGGT
121253704 TCACCATCAAGACTGAAGATCTCCCCTCAATTTCCCTTCAGGAGTTTTGGGT
1 TCACCATCAAGACTGAAGATCTCCCCTCAATTTCCCTTCAGGAGTTTTGGGT
121253756 T
1 T
121253757 TTCTTTATGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (52 bp):
TCACCATCAAGACTGAAGATCTCCCCTCAATTTCCCTTCAGGAGTTTTGGGT
Found at i:121259440 original size:14 final size:14
Alignment explanation
Indices: 121259421--121259455 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
121259411 TACTTGATTT
121259421 GTTCTTAATTATGC
1 GTTCTTAATTATGC
*
121259435 GTTCTTAATTATGT
1 GTTCTTAATTATGC
121259449 GTTCTTA
1 GTTCTTA
121259456 TTCCAGGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.20, C:0.11, G:0.14, T:0.54
Consensus pattern (14 bp):
GTTCTTAATTATGC
Found at i:121259878 original size:13 final size:13
Alignment explanation
Indices: 121259862--121259894 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
121259852 TTCAATTAAA
*
121259862 TTAGTTAATTAGT
1 TTAGATAATTAGT
121259875 TTAGATAATTAGT
1 TTAGATAATTAGT
121259888 TTA-ATAA
1 TTAGATAA
121259895 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:121262523 original size:21 final size:20
Alignment explanation
Indices: 121262491--121262535 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
121262481 GCCGTTCAGC
*
121262491 CGTGTACAATAATACACAGG
1 CGTGTACAATAACACACAGG
* *
121262511 CGTGCTACCATAACACACGGG
1 CGTG-TACAATAACACACAGG
121262532 CGTG
1 CGTG
121262536 GGAGAAGCGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.31, C:0.27, G:0.24, T:0.18
Consensus pattern (20 bp):
CGTGTACAATAACACACAGG
Found at i:121264487 original size:5 final size:5
Alignment explanation
Indices: 121264477--121264543 Score: 57
Period size: 6 Copynumber: 12.6 Consensus size: 5
121264467 TATTCTTGTA
*
121264477 TTTAT TTTAT TTTATT TTTATT TTTATT TTTAT TTATAT TTTCAT TTCAAT
1 TTTAT TTTAT TTTA-T TTTA-T TTTA-T TTTAT TT-TAT TTT-AT TT-TAT
121264528 TTTA- -TTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTT
121264544 GAAAGACATA
Statistics
Matches: 54, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
3 3 0.06
5 21 0.39
6 30 0.56
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:121264492 original size:22 final size:23
Alignment explanation
Indices: 121264464--121264516 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
121264454 CCTCCTATCT
*
121264464 TTTTATTCTTGTATTTA-TTTTA
1 TTTTATTCTTATATTTATTTTTA
* *
121264486 TTTTATTTTTATTTTTATTTTTA
1 TTTTATTCTTATATTTATTTTTA
121264509 TTTATATT
1 TTT-TATT
121264517 TTCATTTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 14 0.54
23 8 0.31
24 4 0.15
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (23 bp):
TTTTATTCTTATATTTATTTTTA
Found at i:121264497 original size:6 final size:6
Alignment explanation
Indices: 121264463--121264523 Score: 63
Period size: 6 Copynumber: 10.5 Consensus size: 6
121264453 TCCTCCTATC
* * *
121264463 TTTTTA TTCTTG TATTTA -TTTTA -TTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
121264509 TTTATA TTTTCA TTT
1 TTTTTA TTTTTA TTT
121264524 CAATTTTATT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
5 9 0.20
6 36 0.80
ACGTcount: A:0.18, C:0.03, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:121267471 original size:13 final size:13
Alignment explanation
Indices: 121267455--121267487 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
121267445 TTCAATTAAA
*
121267455 TTAGTTAATTAGT
1 TTAGATAATTAGT
121267468 TTAGATAATTAGT
1 TTAGATAATTAGT
121267481 TTA-ATAA
1 TTAGATAA
121267488 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:121272520 original size:21 final size:22
Alignment explanation
Indices: 121272485--121272533 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
121272475 CTACCAACTT
121272485 TAAATGCAAATTACAAAAGAAC
1 TAAATGCAAATTACAAAAGAAC
* *
121272507 TAAAT-CAAGTTACAAATGAAC
1 TAAATGCAAATTACAAAAGAAC
*
121272528 AAAATG
1 TAAATG
121272534 TTGCTGCTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.57, C:0.12, G:0.10, T:0.20
Consensus pattern (22 bp):
TAAATGCAAATTACAAAAGAAC
Found at i:121280999 original size:3 final size:3
Alignment explanation
Indices: 121280991--121281024 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
121280981 TAATTTAATT
121280991 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
121281025 ACCTACTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Done.