Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 420 of 444
Found at i:121678196 original size:29 final size:29
Alignment explanation
Indices: 121678163--121678323 Score: 171
Period size: 29 Copynumber: 5.6 Consensus size: 29
121678153 GTGACGAGAT
121678163 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
121678192 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
121678221 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
121678250 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
121678279 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
121678308 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
121678324 AAATCGAGTA
Statistics
Matches: 112, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 110 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:121680321 original size:43 final size:43
Alignment explanation
Indices: 121680260--121680381 Score: 192
Period size: 43 Copynumber: 2.9 Consensus size: 43
121680250 ATGGTACCAT
*
121680260 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATCCCGGTGAAATAATA
* * *
121680303 TCGGGCCTCGAGCCTAGCAGGCTATAATTCCAGTGAAATAATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATCCCGGTGAAATAATA
*
121680346 TCGGGCTTCGAGCCTAGCAGGCGA-AATCCCGGTGAA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATCCCGGTGAA
121680382 TGAATTTAGA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
42 10 0.14
43 62 0.86
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (43 bp):
TCGGGCTTCGAGCCTAGCAGGCTATAATCCCGGTGAAATAATA
Found at i:121682698 original size:28 final size:28
Alignment explanation
Indices: 121682626--121682704 Score: 70
Period size: 28 Copynumber: 2.8 Consensus size: 28
121682616 TGTCCCGACA
* * * *
121682626 AACTTACCTCGTGTTTACTTTCCTGGTG
1 AACTTAACTTGTGTTTACTGTCCTGATG
* *
121682654 AGCTTAACTTGTATTTACTGTCCTGATG
1 AACTTAACTTGTGTTTACTGTCCTGATG
* *
121682682 AACTTTA-TCTGTGTTTATTGTCC
1 AACTTAACT-TGTGTTTACTGTCC
121682705 CAATGGACTA
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
27 1 0.03
28 39 0.98
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (28 bp):
AACTTAACTTGTGTTTACTGTCCTGATG
Found at i:121682776 original size:66 final size:66
Alignment explanation
Indices: 121682700--121682825 Score: 202
Period size: 66 Copynumber: 1.9 Consensus size: 66
121682690 CTGTGTTTAT
*
121682700 TGTCCCAATGGACTATCTCT-TATCTATGTTTACTGTCCTAGTAGG-CTATCTCTATTTTGTTTG
1 TGTCCCAATGGACTATCTCTAT-TCTATGTTTACAGTCCTAGT-GGACTATCTCTATTTTGTTTG
121682763 TAC
64 TAC
*
121682766 TGTCCCAATGGACTTTCTCTATTCTATGTTTACAGTCCTAGTGGACTATCTCTATTTTGT
1 TGTCCCAATGGACTATCTCTATTCTATGTTTACAGTCCTAGTGGACTATCTCTATTTTGT
121682826 ATTTATTGTT
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
65 2 0.04
66 53 0.95
67 1 0.02
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.45
Consensus pattern (66 bp):
TGTCCCAATGGACTATCTCTATTCTATGTTTACAGTCCTAGTGGACTATCTCTATTTTGTTTGTA
C
Found at i:121682819 original size:33 final size:33
Alignment explanation
Indices: 121682693--121682821 Score: 131
Period size: 33 Copynumber: 3.9 Consensus size: 33
121682683 ACTTTATCTG
* * *
121682693 TGTTTATTGTCCCAATGGACTATCTCT-TATCTA
1 TGTTTACTGTCCTAGTGGACTATCTCTAT-TCTA
121682726 TGTTTACTGTCCTAGTAGG-CTATCTCTATT-T-
1 TGTTTACTGTCCTAGT-GGACTATCTCTATTCTA
* * *
121682757 TGTTTGTACTGTCCCAATGGACTTTCTCTATTCTA
1 TG-TT-TACTGTCCTAGTGGACTATCTCTATTCTA
*
121682792 TGTTTACAGTCCTAGTGGACTATCTCTATT
1 TGTTTACTGTCCTAGTGGACTATCTCTATT
121682822 TTGTATTTAT
Statistics
Matches: 79, Mismatches: 10, Indels: 14
0.77 0.10 0.14
Matches are distributed among these distances:
31 2 0.03
32 5 0.06
33 64 0.81
34 6 0.08
35 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.46
Consensus pattern (33 bp):
TGTTTACTGTCCTAGTGGACTATCTCTATTCTA
Found at i:121686399 original size:20 final size:20
Alignment explanation
Indices: 121686376--121686414 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
121686366 TAAGATGAAC
*
121686376 TAATATTTGGTAGTCCCTCA
1 TAATATTTGATAGTCCCTCA
* *
121686396 TAATTTTTGATATTCCCTC
1 TAATATTTGATAGTCCCTC
121686415 TTTTTTTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.46
Consensus pattern (20 bp):
TAATATTTGATAGTCCCTCA
Found at i:121686571 original size:20 final size:20
Alignment explanation
Indices: 121686512--121686573 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
121686502 GTACTCCATG
* * *
121686512 TTTTTAGTACTCCTTTATTA
1 TTTTTGGTATTCCTTTATAA
* *
121686532 TTTTTGATATT-CTCTAATAA
1 TTTTTGGTATTCCT-TTATAA
121686552 TTTTTGGTATTCCTTTATAA
1 TTTTTGGTATTCCTTTATAA
121686572 TT
1 TT
121686574 ATTCACAATC
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
19 2 0.06
20 29 0.88
21 2 0.06
ACGTcount: A:0.23, C:0.11, G:0.06, T:0.60
Consensus pattern (20 bp):
TTTTTGGTATTCCTTTATAA
Found at i:121686636 original size:20 final size:19
Alignment explanation
Indices: 121686594--121686636 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
121686584 TCTCTCACAT
*
121686594 AATTTTTATATGCTATCAG
1 AATTTTTATATGCTATCAA
*
121686613 AATTTTTGATATGCTTTCAA
1 AATTTTT-ATATGCTATCAA
121686633 AATT
1 AATT
121686637 AAGTTTTAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.49
Consensus pattern (19 bp):
AATTTTTATATGCTATCAA
Found at i:121687061 original size:20 final size:21
Alignment explanation
Indices: 121687026--121687066 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
121687016 TTATTTCAAA
121687026 ACCATACAAAAAAATTATGAG
1 ACCATACAAAAAAATTATGAG
*
121687047 ACCATAC-AGAAAATTATGAG
1 ACCATACAAAAAAATTATGAG
121687067 GGTGTACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.54, C:0.15, G:0.12, T:0.20
Consensus pattern (21 bp):
ACCATACAAAAAAATTATGAG
Found at i:121687326 original size:20 final size:20
Alignment explanation
Indices: 121687149--121687340 Score: 119
Period size: 20 Copynumber: 9.6 Consensus size: 20
121687139 TTTTCTAAAC
121687149 AATA-CAAATAATTATGAGGA
1 AATACCAAA-AATTATGAGGA
* * * *
121687169 AGTATCAAAAATTACGAGGG
1 AATACCAAAAATTATGAGGA
**
121687189 AATAAAAAAAATTATGA-GA
1 AATACCAAAAATTATGAGGA
*
121687208 AAGTACAAAAAATTATGA-G-
1 AA-TACCAAAAATTATGAGGA
* *
121687227 AATGCATCAAAAATTATGAGGG
1 AAT--ACCAAAAATTATGAGGA
*
121687249 AATACCAAAAATATAT-TGGA
1 AATACCAAAAAT-TATGAGGA
121687269 GAATACCAAAAA--ATCGAAGGA
1 -AATACCAAAAATTAT-G-AGGA
* * **
121687290 TATACTAAAAAACATGAGGA
1 AATACCAAAAATTATGAGGA
*
121687310 AATACCAAAAATTATGAGGG
1 AATACCAAAAATTATGAGGA
*
121687330 AATGCCAAAAA
1 AATACCAAAAA
121687341 ATCTAAAGAA
Statistics
Matches: 136, Mismatches: 23, Indels: 26
0.74 0.12 0.14
Matches are distributed among these distances:
18 3 0.02
19 5 0.04
20 100 0.74
21 23 0.17
22 5 0.04
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.20
Consensus pattern (20 bp):
AATACCAAAAATTATGAGGA
Found at i:121691459 original size:46 final size:47
Alignment explanation
Indices: 121691394--121691658 Score: 308
Period size: 46 Copynumber: 5.7 Consensus size: 47
121691384 TTATCTTTAA
* * * *
121691394 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
*
121691440 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
* * * *
121691486 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTGCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
* * * * * *
121691532 CACGCTACCATGGTATCTTTCAACCATGATCTTATTCATTTACCA--T
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTT-TCATGT
* * *
121691578 CATGTTGCCATGGTATCTCTCAACCATGGTCTTATTC-TATTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
*
121691624 CATGTTGCCATGTTATCTTTCAACCATGGTCTTAC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAC
121691659 ATATTTCATT
Statistics
Matches: 187, Mismatches: 26, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
44 2 0.01
45 7 0.04
46 174 0.93
47 2 0.01
48 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
Found at i:121691657 original size:138 final size:138
Alignment explanation
Indices: 121691409--121691659 Score: 412
Period size: 138 Copynumber: 1.8 Consensus size: 138
121691399 TGCCATAGTG
* * * ** *
121691409 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGATCTTACTCATTTACCATCATGTTGCCATGGTATCTCTCAACCATGGTCTTA
*
121691474 TTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTGCATATCACGCTA
66 TTCTATTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTGCATATCACGCTA
121691539 CCATGGTA
131 CCATGGTA
*
121691547 TCTTTCAACCATGATCTTATTCATTTACCATCATGTTGCCATGGTATCTCTCAACCATGGTCTTA
1 TCTTTCAACCATGATCTTACTCATTTACCATCATGTTGCCATGGTATCTCTCAACCATGGTCTTA
* *
121691612 TTCTATTCATGTCATGTTGCCATGTTATCTTTCAACCATGGTCTTACA
66 TTCTATTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACA
121691660 TATTTCATTT
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
138 103 1.00
ACGTcount: A:0.21, C:0.25, G:0.13, T:0.41
Consensus pattern (138 bp):
TCTTTCAACCATGATCTTACTCATTTACCATCATGTTGCCATGGTATCTCTCAACCATGGTCTTA
TTCTATTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTGCATATCACGCTA
CCATGGTA
Found at i:121693529 original size:11 final size:11
Alignment explanation
Indices: 121693513--121693562 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
121693503 CTTTGTATAC
121693513 TAATAAAATAA
1 TAATAAAATAA
*
121693524 TAATAAAATATCT
1 TAATAAAATA--A
* *
121693537 TATTAAAATAT
1 TAATAAAATAA
121693548 TAATAAAATAA
1 TAATAAAATAA
121693559 TAAT
1 TAAT
121693563 TATCTAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 24 0.73
13 9 0.27
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:121693576 original size:30 final size:30
Alignment explanation
Indices: 121693519--121693587 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 30
121693509 ATACTAATAA
*
121693519 AATAATAATAAAATATCTTATTAAAAT-ATT
1 AATAA-AATAAAATATCTAATTAAAATAATT
121693549 AATAAAATAATAATTATCTAATT-AAATAATT
1 AATAAAATAA-AA-TATCTAATTAAAATAATT
121693580 -ATAAAATA
1 AATAAAATA
121693588 TCAAAATATC
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 5 0.14
30 19 0.54
31 11 0.31
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (30 bp):
AATAAAATAAAATATCTAATTAAAATAATT
Found at i:121693598 original size:31 final size:30
Alignment explanation
Indices: 121693519--121693598 Score: 76
Period size: 31 Copynumber: 2.6 Consensus size: 30
121693509 ATACTAATAA
*
121693519 AATAATAAT-AAAATATCTTATTAAAATATT
1 AATAA-AATAAAAATATCTAATTAAAATATT
*
121693549 AATAAAATAATAATTATCTAATT-AAATAATT
1 AATAAAATAA-AAATATCTAATTAAAAT-ATT
121693580 -ATAAAATATCAAAATATCT
1 AATAAAATA--AAAATATCT
121693599 CTAGCATCAT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
29 3 0.07
30 18 0.43
31 20 0.48
32 1 0.02
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (30 bp):
AATAAAATAAAAATATCTAATTAAAATATT
Found at i:121694362 original size:26 final size:26
Alignment explanation
Indices: 121694326--121694435 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
121694316 TGATACAAAT
*
121694326 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
121694352 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
121694378 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
121694404 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
121694430 TGATAA
1 TGATAA
121694436 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:121696606 original size:135 final size:137
Alignment explanation
Indices: 121696224--121696645 Score: 749
Period size: 137 Copynumber: 3.1 Consensus size: 137
121696214 GAGTAGTCTC
121696224 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
121696289 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTTTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
121696354 ACTGTTA
131 ACTGTTA
121696361 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
121696426 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
121696491 ACTGTTA
131 ACTGTTA
* * * *
121696498 CCCAAATGGGCTTCCATTTG-TTATTGAT-TTGCATGTATTTTGAAATGGGCCTATGGGCTATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
121696561 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
121696626 ACTGTTA
131 ACTGTTA
**
121696633 CCTGAATGGGCTT
1 CCCAAATGGGCTT
121696646 AGGCCCAATA
Statistics
Matches: 275, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
135 116 0.42
136 7 0.03
137 152 0.55
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:121709679 original size:16 final size:16
Alignment explanation
Indices: 121709658--121709698 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
121709648 GGTTTACTGG
121709658 AATAGAATATG-ATTGA
1 AATAGAATA-GAATTGA
*
121709674 AATAGAATAGAATTGT
1 AATAGAATAGAATTGA
121709690 AATAGAATA
1 AATAGAATA
121709699 AAACTGTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 1 0.04
16 22 0.96
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (16 bp):
AATAGAATAGAATTGA
Found at i:121709706 original size:16 final size:16
Alignment explanation
Indices: 121709674--121709709 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
121709664 ATATGATTGA
* *
121709674 AATAGAATAGAATTGT
1 AATAGAATAAAACTGT
121709690 AATAGAATAAAACTGT
1 AATAGAATAAAACTGT
121709706 AATA
1 AATA
121709710 AGTAATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.03, G:0.14, T:0.28
Consensus pattern (16 bp):
AATAGAATAAAACTGT
Found at i:121709774 original size:43 final size:44
Alignment explanation
Indices: 121709721--121709830 Score: 145
Period size: 44 Copynumber: 2.5 Consensus size: 44
121709711 GTAATTTAAT
* *
121709721 TATTTAGTTGAATAGAATGGAATA-AAGTTATAA-AATATTCTTG
1 TATTTGGTTGAATAGAATAGAATAGAA-TTATAATAATATTCTTG
*
121709764 TATTTGGTTGAATTGAATAGAATAGAATTATAATAATATTCTTG
1 TATTTGGTTGAATAGAATAGAATAGAATTATAATAATATTCTTG
*
121709808 TATTTGGTTTG-ATGGAATAGAAT
1 TATTTGG-TTGAATAGAATAGAAT
121709831 TGTAACAGCA
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
43 27 0.45
44 30 0.50
45 3 0.05
ACGTcount: A:0.38, C:0.02, G:0.18, T:0.42
Consensus pattern (44 bp):
TATTTGGTTGAATAGAATAGAATAGAATTATAATAATATTCTTG
Found at i:121709947 original size:22 final size:22
Alignment explanation
Indices: 121709908--121709949 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
121709898 ATTGTTATTG
*
121709908 TTATTAAATTTTAATAAAATTA
1 TTATTAAATTATAATAAAATTA
121709930 TTATTAAA-TATAATTAAAAT
1 TTATTAAATTATAA-TAAAAT
121709950 AAAAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TTATTAAATTATAATAAAATTA
Found at i:121710359 original size:12 final size:12
Alignment explanation
Indices: 121710342--121710366 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
121710332 CCAGAAGAAT
121710342 CATTTGATTTTC
1 CATTTGATTTTC
121710354 CATTTGATTTTC
1 CATTTGATTTTC
121710366 C
1 C
121710367 TCTTTTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.20, G:0.08, T:0.56
Consensus pattern (12 bp):
CATTTGATTTTC
Found at i:121710477 original size:18 final size:18
Alignment explanation
Indices: 121710454--121710495 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
121710444 CTTTCACCAT
121710454 TGTTGCTTGCATGTCATA
1 TGTTGCTTGCATGTCATA
121710472 TGTTGCTTGCATGTCATA
1 TGTTGCTTGCATGTCATA
121710490 TGTTGC
1 TGTTGC
121710496 CATCAATTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.14, C:0.17, G:0.24, T:0.45
Consensus pattern (18 bp):
TGTTGCTTGCATGTCATA
Found at i:121712530 original size:19 final size:17
Alignment explanation
Indices: 121712498--121712532 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
121712488 GTTTTATCTC
121712498 TTTTTCTTTTTATATAA
1 TTTTTCTTTTTATATAA
121712515 TTTTCTCTTCTTTATATA
1 TTTT-TCTT-TTTATATA
121712533 TAACAATAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 4 0.25
19 8 0.50
ACGTcount: A:0.20, C:0.11, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTTCTTTTTATATAA
Found at i:121713117 original size:2 final size:2
Alignment explanation
Indices: 121713110--121713141 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
121713100 ACTATAGTTG
121713110 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121713142 GTGTGTGTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121714089 original size:22 final size:22
Alignment explanation
Indices: 121714047--121714089 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
121714037 TTTTTTGTCT
* *
121714047 TTTAATAATCTTTCTATTTTTG
1 TTTAATAACCTTTCTAATTTTG
121714069 TTTAATAACCTTT-TGAATTTT
1 TTTAATAACCTTTCT-AATTTT
121714090 TAAAATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.26, C:0.09, G:0.05, T:0.60
Consensus pattern (22 bp):
TTTAATAACCTTTCTAATTTTG
Found at i:121714137 original size:30 final size:28
Alignment explanation
Indices: 121714086--121714148 Score: 81
Period size: 30 Copynumber: 2.2 Consensus size: 28
121714076 ACCTTTTGAA
*
121714086 TTTTTAAAATTTTATATAATTTTATAAC
1 TTTTTAAAATTTTATATAATTTAATAAC
* *
121714114 TTTTTAAAATTTTCTTAATAATTTAATAAT
1 TTTTTAAAATTTT-AT-ATAATTTAATAAC
121714144 TTTTT
1 TTTTT
121714149 TATTTTTTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 13 0.43
29 1 0.03
30 16 0.53
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (28 bp):
TTTTTAAAATTTTATATAATTTAATAAC
Found at i:121714146 original size:28 final size:27
Alignment explanation
Indices: 121714087--121714147 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 27
121714077 CCTTTTGAAT
*
121714087 TTTTAAAATTTTATATAATTTTATAAC
1 TTTTAAAATTTTATATAATTTAATAAC
* *
121714114 TTTTTAAAATTTTCTTAATAATTTAATAAT
1 -TTTTAAAATTTT-AT-ATAATTTAATAAC
121714144 TTTT
1 TTTT
121714148 TTATTTTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 12 0.43
29 5 0.18
30 11 0.39
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (27 bp):
TTTTAAAATTTTATATAATTTAATAAC
Found at i:121714188 original size:21 final size:22
Alignment explanation
Indices: 121714164--121714213 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
121714154 TTTCTTTTGC
121714164 ATTTTTGTGAATTTTTA-AAAT
1 ATTTTTGTGAATTTTTATAAAT
* * *
121714185 ATTTTTATTAATTTTTATGAAT
1 ATTTTTGTGAATTTTTATAAAT
121714207 ATTTTTG
1 ATTTTTG
121714214 CAATATTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (22 bp):
ATTTTTGTGAATTTTTATAAAT
Found at i:121714254 original size:19 final size:19
Alignment explanation
Indices: 121714230--121714274 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
121714220 TTTTACAATT
**
121714230 TAATTTTTTTATGTTTAAA
1 TAATTTTTGAATGTTTAAA
*
121714249 TAATTTTTGAATTTTTAAA
1 TAATTTTTGAATGTTTAAA
121714268 -AATTTTT
1 TAATTTTT
121714275 AATAATTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (19 bp):
TAATTTTTGAATGTTTAAA
Found at i:121714323 original size:85 final size:86
Alignment explanation
Indices: 121714166--121714324 Score: 193
Period size: 85 Copynumber: 1.9 Consensus size: 86
121714156 TCTTTTGCAT
* ** *
121714166 TTTTGTGAATTTTTAAAATATTTTTATTAATTTTTATGAATATTTTTGCAATATTTTTACAATTT
1 TTTTGTGAATTTTTAAAATATTTTTAATAATTTTTATGAATATTTTTAAAATAATTTTACAATTT
121714231 AATTTTTTTATGTTTAAATAA
66 AATTTTTTTATGTTTAAATAA
* *
121714252 TTTT-TGAATTTTTAAAA-ATTTTTAATAATTTTCTA-GCCAT-TTTTTAAAAATAATTTTA-AT
1 TTTTGTGAATTTTTAAAATATTTTTAATAATTTT-TATG-AATATTTTT-AAAATAATTTTACAA
121714312 TTTACATTTTTTT
63 TTTA-ATTTTTTT
121714325 CAATTTTAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
84 25 0.40
85 34 0.54
86 4 0.06
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (86 bp):
TTTTGTGAATTTTTAAAATATTTTTAATAATTTTTATGAATATTTTTAAAATAATTTTACAATTT
AATTTTTTTATGTTTAAATAA
Found at i:121714925 original size:16 final size:16
Alignment explanation
Indices: 121714904--121714939 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
121714894 AACGACGAGT
* *
121714904 GTTTTTATTGTTTTCA
1 GTTTTTATTATCTTCA
121714920 GTTTTTATTATCTTCA
1 GTTTTTATTATCTTCA
121714936 GTTT
1 GTTT
121714940 AATTTATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.08, G:0.11, T:0.67
Consensus pattern (16 bp):
GTTTTTATTATCTTCA
Found at i:121715577 original size:13 final size:13
Alignment explanation
Indices: 121715559--121715583 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121715549 TAGAAGTAAT
121715559 AAGAAATATATAA
1 AAGAAATATATAA
121715572 AAGAAATATATA
1 AAGAAATATATA
121715584 CATACATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
AAGAAATATATAA
Found at i:121716199 original size:25 final size:24
Alignment explanation
Indices: 121716144--121716201 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
121716134 ATATATATGT
*
121716144 ATATAATACTAAGTAATAATAATA
1 ATATAATACCAAGTAATAATAATA
*
121716168 ATAATAATACCATGCTAATAAATAA-A
1 AT-ATAATACCAAG-TAAT-AATAATA
121716194 ATATAATA
1 ATATAATA
121716202 ATGATAGCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 2 0.07
25 15 0.52
26 7 0.24
27 5 0.17
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (24 bp):
ATATAATACCAAGTAATAATAATA
Found at i:121716274 original size:19 final size:18
Alignment explanation
Indices: 121716243--121716287 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
121716233 ATAATATTAA
* *
121716243 GACAAAAATAAAATAATG
1 GACAAAAGTAAAAAAATG
121716261 AGA-AAAAGTAAAAAAATG
1 -GACAAAAGTAAAAAAATG
121716279 GACAAAAGT
1 GACAAAAGT
121716288 GAATTAACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 19 0.83
19 2 0.09
ACGTcount: A:0.67, C:0.04, G:0.16, T:0.13
Consensus pattern (18 bp):
GACAAAAGTAAAAAAATG
Found at i:121717188 original size:34 final size:33
Alignment explanation
Indices: 121717143--121717210 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 33
121717133 TGGCAGAAAC
121717143 CGGTAGTGGAGCAGAGGGGAGCACATGCTGGCGG
1 CGGTAGTGGAGCAGAGGGGAGCACATGCT-GCGG
* *
121717177 CGGTGGTGGAGCAGAGGGGAGCACCTGCTGCGG
1 CGGTAGTGGAGCAGAGGGGAGCACATGCTGCGG
121717210 C
1 C
121717211 TAGGGTTCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 5 0.16
34 27 0.84
ACGTcount: A:0.18, C:0.21, G:0.50, T:0.12
Consensus pattern (33 bp):
CGGTAGTGGAGCAGAGGGGAGCACATGCTGCGG
Found at i:121717876 original size:43 final size:43
Alignment explanation
Indices: 121717824--121717968 Score: 149
Period size: 43 Copynumber: 3.5 Consensus size: 43
121717814 AAACTCAACC
*
121717824 TGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTGGCT
1 TGTTACCCTACTGCTCAGGGGTTTAAGGTTTGAAAATTTGGCT
* * * * *
121717867 TGTTGCCCTATTGCTCA-GGG--CAA--TCT-ATAAATTTCAGCT
1 TGTTACCCTACTGCTCAGGGGTTTAAGGTTTGA-AAATTT-GGCT
*
121717906 TGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTGGCT
1 TGTTACCCTACTGCTCAGGGGTTTAAGGTTTGAAAATTTGGCT
* *
121717949 TGTTGCCCTATTGCTCAGGG
1 TGTTACCCTACTGCTCAGGG
121717969 CAATCTATAA
Statistics
Matches: 79, Mismatches: 15, Indels: 16
0.72 0.14 0.15
Matches are distributed among these distances:
37 1 0.01
38 8 0.10
39 17 0.22
40 5 0.06
42 5 0.06
43 34 0.43
44 8 0.10
45 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (43 bp):
TGTTACCCTACTGCTCAGGGGTTTAAGGTTTGAAAATTTGGCT
Found at i:121717908 original size:39 final size:39
Alignment explanation
Indices: 121717864--121718007 Score: 139
Period size: 39 Copynumber: 3.6 Consensus size: 39
121717854 TGAAAATTTG
* *
121717864 GCTTGTTGCCCTATTGCTCAGGGCAATCTATAAATTTCA
1 GCTTGTTACCCTACTGCTCAGGGCAATCTATAAATTTCA
* * * *
121717903 GCTTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGA-AAATTT-G
1 GCTTGTTACCCTACTGCTCA-GGG--CAA--TCT-ATAAATTTCA
* *
121717946 GCTTGTTGCCCTATTGCTCAGGGCAATCTATAAATTTCA
1 GCTTGTTACCCTACTGCTCAGGGCAATCTATAAATTTCA
*
121717985 GCTTGTTACCCTACTGCTTAGGG
1 GCTTGTTACCCTACTGCTCAGGG
121718008 GGTTAAAGCT
Statistics
Matches: 82, Mismatches: 15, Indels: 16
0.73 0.13 0.14
Matches are distributed among these distances:
37 1 0.01
38 8 0.10
39 37 0.45
40 5 0.06
42 5 0.06
43 17 0.21
44 8 0.10
45 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (39 bp):
GCTTGTTACCCTACTGCTCAGGGCAATCTATAAATTTCA
Found at i:121717961 original size:82 final size:82
Alignment explanation
Indices: 121717824--121718013 Score: 371
Period size: 82 Copynumber: 2.3 Consensus size: 82
121717814 AAACTCAACC
121717824 TGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTGGCTTGTTGCCCTATTGCTCAGGGCA
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTGGCTTGTTGCCCTATTGCTCAGGGCA
121717889 ATCTATAAATTTCAGCT
66 ATCTATAAATTTCAGCT
121717906 TGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTGGCTTGTTGCCCTATTGCTCAGGGCA
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTGGCTTGTTGCCCTATTGCTCAGGGCA
121717971 ATCTATAAATTTCAGCT
66 ATCTATAAATTTCAGCT
*
121717988 TGTTACCCTACTGCTTAGGGGGTTAA
1 TGTTACCCTACTGCTTAGGGGTTTAA
121718014 AGCTTGGTGG
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 107 1.00
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (82 bp):
TGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTGGCTTGTTGCCCTATTGCTCAGGGCA
ATCTATAAATTTCAGCT
Found at i:121718393 original size:42 final size:42
Alignment explanation
Indices: 121718303--121718627 Score: 260
Period size: 42 Copynumber: 7.5 Consensus size: 42
121718293 CAGCCTATTA
** * * *
121718303 CCCTACTGCTTAGGAGGTTAAGGCCCATCTTCTTTGATCTGTTT
1 CCCTACTGCTTAGG-GGTTAA-GATCTTCATCTTCGATCTGTTT
121718347 CCCTACTGCTTAGGGGTTAAGATCTTCATCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTAAGATCTTCATCTTCGATCTGTTT
* * * * * *
121718389 CCCTACTGCCTAGGGAGATAAGATCTGCA-ATTCGGTCTGTTA
1 CCCTACTGCTTAGGG-GTTAAGATCTTCATCTTCGATCTGTTT
* * * *
121718431 CCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGA-TCTTCATCTTCGATCTGTTT
* * * ** *
121718475 CCCTACTGCTTAGGGAGATAAGATCTGCA-ATTCGGCCTGTTA
1 CCCTACTGCTTAGGG-GTTAAGATCTTCATCTTCGATCTGTTT
* * *
121718517 CCCTACTGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGA-TCTTCATCTTCGATCTGTTT
* * * *
121718561 CCCTACTACTTAGAGGGTTAAGATCTATAAATCTTC-AGCCTGTTA
1 CCCTACTGCTTAG-GGGTTAAGATCT-T-CATCTTCGA-TCTGTTT
121718606 CCCTACTGCTTAGGGGGTTAAG
1 CCCTACTGCTTA-GGGGTTAAG
121718628 GTTTATGAAT
Statistics
Matches: 220, Mismatches: 48, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
41 2 0.01
42 86 0.39
43 28 0.13
44 70 0.32
45 33 0.15
46 1 0.00
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.34
Consensus pattern (42 bp):
CCCTACTGCTTAGGGGTTAAGATCTTCATCTTCGATCTGTTT
Found at i:121718539 original size:128 final size:128
Alignment explanation
Indices: 121718300--121718531 Score: 306
Period size: 128 Copynumber: 1.8 Consensus size: 128
121718290 TTTCAGCCTA
* * * * * *
121718300 TTACCCTACTGCTTAGGAGGTTAAGGCCCATCTTCTTTGATCTGTTTCCCTACTGCTTAGGGGTT
1 TTACCCTACCGATTAGGAGGTTAAGACCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGAT
* * * * *
121718365 AAGATCTTCATCTTCGATCTGTTTCCCTACTGCCTAGGGAGATAAGATCTGCAATTCGGTCTG
66 AAGATCTGCATATTCGACCTGTTACCCTACTGACTAGGGAGATAAGATCTGCAATTCGGTCTG
*
121718428 TTACCCTACCGATTAGG-GGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGAG
1 TTACCCTACCGATTAGGAGG-TTAAGACCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGGG-G
* *
121718492 ATAAGATCTGCA-ATTCGGCCTGTTACCCTACTGATTAGGG
64 ATAAGATCTGCATATTCGACCTGTTACCCTACTGACTAGGG
121718532 GTTTAAGACC
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
127 2 0.02
128 75 0.85
129 11 0.12
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (128 bp):
TTACCCTACCGATTAGGAGGTTAAGACCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGAT
AAGATCTGCATATTCGACCTGTTACCCTACTGACTAGGGAGATAAGATCTGCAATTCGGTCTG
Found at i:121718573 original size:86 final size:86
Alignment explanation
Indices: 121718341--121718627 Score: 391
Period size: 86 Copynumber: 3.3 Consensus size: 86
121718331 CTTCTTTGAT
* * * * *
121718341 CTGTTTCCCTACTGCTTAGGGG-TTAAGA-TCTTCATCTTCGATCTGTTTCCCTACTGCCTAGGG
1 CTGTTACCCTACTGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
*
121718404 AGATAAGATCTGCAATTCGGT
66 AGATAAGATCTGCAATTCGGC
*
121718425 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
121718490 AGATAAGATCTGCAATTCGGC
66 AGATAAGATCTGCAATTCGGC
*
121718511 CTGTTACCCTACTGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTACTTAGAG
1 CTGTTACCCTACTGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAG-G
* ** *
121718576 G-GTTAAGATCTATAAATCTTCAGC
65 GAGATAAGATCT-GCAA--TTCGGC
* *
121718600 CTGTTACCCTACTGCTTAGGGGGTTAAG
1 CTGTTACCCTACTGATTAGGGGTTTAAG
121718628 GTTTATGAAT
Statistics
Matches: 182, Mismatches: 15, Indels: 7
0.89 0.07 0.03
Matches are distributed among these distances:
84 19 0.10
85 6 0.03
86 122 0.67
87 4 0.02
89 31 0.17
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.34
Consensus pattern (86 bp):
CTGTTACCCTACTGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
AGATAAGATCTGCAATTCGGC
Found at i:121729870 original size:13 final size:13
Alignment explanation
Indices: 121729852--121729876 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121729842 TAGAAGTAAT
121729852 AAGAAATATATAA
1 AAGAAATATATAA
121729865 AAGAAATATATA
1 AAGAAATATATA
121729877 CATACATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
AAGAAATATATAA
Found at i:121730565 original size:19 final size:18
Alignment explanation
Indices: 121730534--121730578 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
121730524 ATAATATTAA
* *
121730534 GACAAAAATAAAATAATG
1 GACAAAAGTAAAAAAATG
121730552 AGA-AAAAGTAAAAAAATG
1 -GACAAAAGTAAAAAAATG
121730570 GACAAAAGT
1 GACAAAAGT
121730579 GAATTAACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 19 0.83
19 2 0.09
ACGTcount: A:0.67, C:0.04, G:0.16, T:0.13
Consensus pattern (18 bp):
GACAAAAGTAAAAAAATG
Found at i:121733642 original size:27 final size:27
Alignment explanation
Indices: 121733597--121733656 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
121733587 TTCACCTCCT
* * *
121733597 GTGTTTATTGTTTCGGCGAACTACCCC
1 GTGTTTACTGTCTCCGCGAACTACCCC
*
121733624 GTGTTTACTGTCTCCGCGAATTACCCC
1 GTGTTTACTGTCTCCGCGAACTACCCC
*
121733651 ATGTTT
1 GTGTTT
121733657 TCTTTCCTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.15, C:0.27, G:0.20, T:0.38
Consensus pattern (27 bp):
GTGTTTACTGTCTCCGCGAACTACCCC
Found at i:121735107 original size:31 final size:31
Alignment explanation
Indices: 121735069--121735130 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
121735059 TACATAACAA
121735069 AAGTTTTGATGATCAAGAATCTGAAAGAACC
1 AAGTTTTGATGATCAAGAATCTGAAAGAACC
* * *
121735100 AAGTTTTGGTGATCAATAATCTGAAATAACC
1 AAGTTTTGATGATCAAGAATCTGAAAGAACC
121735131 TCAAGAATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (31 bp):
AAGTTTTGATGATCAAGAATCTGAAAGAACC
Found at i:121748757 original size:16 final size:16
Alignment explanation
Indices: 121748748--121748813 Score: 68
Period size: 14 Copynumber: 4.2 Consensus size: 16
121748738 AAAATATTAT
121748748 ATTAATAAAATTAATA
1 ATTAATAAAATTAATA
121748764 ATTAAT--AATTAATA
1 ATTAATAAAATTAATA
121748778 ATTAAT--AATTAATA
1 ATTAATAAAATTAATA
**
121748792 ATATTTTAAAATTTAATA
1 AT-TAATAAAA-TTAATA
121748810 ATTA
1 ATTA
121748814 CTTTTATCAA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
14 24 0.56
15 2 0.05
16 6 0.14
17 3 0.07
18 8 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTAATAAAATTAATA
Found at i:121748768 original size:7 final size:7
Alignment explanation
Indices: 121748756--121748793 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
121748746 ATATTAATAA
121748756 AATTAAT
1 AATTAAT
121748763 AATTAAT
1 AATTAAT
121748770 AATTAAT
1 AATTAAT
121748777 AATTAAT
1 AATTAAT
121748784 AATTAAT
1 AATTAAT
121748791 AAT
1 AAT
121748794 ATTTTAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
AATTAAT
Found at i:121748806 original size:7 final size:8
Alignment explanation
Indices: 121748758--121748812 Score: 55
Period size: 7 Copynumber: 7.1 Consensus size: 8
121748748 ATTAATAAAA
121748758 TTAATAA-
1 TTAATAAT
121748765 TTAATAA-
1 TTAATAAT
121748772 TTAATAA-
1 TTAATAAT
121748779 TTAATAAT
1 TTAATAAT
*
121748787 TAATAATATT
1 T--TAATAAT
121748797 TTAA-AAT
1 TTAATAAT
121748804 TTAATAAT
1 TTAATAAT
121748812 T
1 T
121748813 ACTTTTATCA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
7 27 0.64
8 8 0.19
10 7 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (8 bp):
TTAATAAT
Found at i:121748811 original size:21 final size:20
Alignment explanation
Indices: 121748730--121748811 Score: 57
Period size: 21 Copynumber: 4.0 Consensus size: 20
121748720 TTTCATCCAA
121748730 AATAATATAAAATATTATATTAAT
1 AATAAT-TAAAAT-TTA-A-TAAT
121748754 AA-AATTAATAA-TTAATAATT
1 AATAATTAA-AATTTAATAA-T
121748774 AATAATTAATAA-TTAATAAT
1 AATAATTAA-AATTTAATAAT
*
121748794 -AT-TTTAAAATTTAATAAT
1 AATAATTAAAATTTAATAAT
121748812 TACTTTTATC
Statistics
Matches: 53, Mismatches: 1, Indels: 14
0.78 0.01 0.21
Matches are distributed among these distances:
17 2 0.04
18 12 0.23
19 5 0.09
20 5 0.09
21 19 0.36
22 3 0.06
23 5 0.09
24 2 0.04
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
AATAATTAAAATTTAATAAT
Found at i:121750861 original size:25 final size:23
Alignment explanation
Indices: 121750832--121750896 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 23
121750822 AATAAAAAAC
*
121750832 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
121750857 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
121750878 -TTAAAACA-AAAAACAAATA
1 TTTAAAACATAAAAACAAATA
121750897 AAAAATAAGA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
19 10 0.26
20 8 0.21
21 1 0.03
23 5 0.13
24 3 0.08
25 11 0.29
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.25
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:121750891 original size:19 final size:20
Alignment explanation
Indices: 121750858--121750896 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
121750848 TCAAATACAT
121750858 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
121750878 TTAAAACA-AAAAACAAATA
1 TTAAAACATAAAAACAAATA
121750897 AAAAATAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.72, C:0.10, G:0.00, T:0.18
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:121762202 original size:18 final size:18
Alignment explanation
Indices: 121762181--121762248 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 18
121762171 GACTTTTACA
121762181 GAATAAACGACTGATACT
1 GAATAAACGACTGATACT
* *
121762199 GAATAAATGAATATTACTGATTACA
1 GAATAAACG------ACTGA-TACT
121762224 GAATAAACGACTGATACT
1 GAATAAACGACTGATACT
121762242 GAATAAA
1 GAATAAA
121762249 TGAATATTAC
Statistics
Matches: 39, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
18 18 0.46
19 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.49, C:0.12, G:0.15, T:0.25
Consensus pattern (18 bp):
GAATAAACGACTGATACT
Found at i:121762224 original size:43 final size:43
Alignment explanation
Indices: 121762176--121762264 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
121762166 TAATTGACTT
121762176 TTACAGAATAAACGACTGATACTGAATAAATGAATATTACTGA
1 TTACAGAATAAACGACTGATACTGAATAAATGAATATTACTGA
121762219 TTACAGAATAAACGACTGATACTGAATAAATGAATATTACTGA
1 TTACAGAATAAACGACTGATACTGAATAAATGAATATTACTGA
121762262 TTA
1 TTA
121762265 ATCGATTATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.29
Consensus pattern (43 bp):
TTACAGAATAAACGACTGATACTGAATAAATGAATATTACTGA
Found at i:121762229 original size:25 final size:24
Alignment explanation
Indices: 121762190--121762262 Score: 77
Period size: 18 Copynumber: 3.2 Consensus size: 24
121762180 AGAATAAACG
121762190 ACTGATACTGAATAAATGAATATT
1 ACTGATACTGAATAAATGAATATT
* *
121762214 ACTGATTACAGAATAAACG------
1 ACTGA-TACTGAATAAATGAATATT
121762233 ACTGATACTGAATAAATGAATATT
1 ACTGATACTGAATAAATGAATATT
121762257 ACTGAT
1 ACTGAT
121762263 TAATCGATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
18 11 0.29
19 5 0.13
24 11 0.29
25 11 0.29
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (24 bp):
ACTGATACTGAATAAATGAATATT
Found at i:121765383 original size:3 final size:3
Alignment explanation
Indices: 121765375--121765441 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
121765365 TTTATTTCTT
121765375 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
121765423 TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
121765442 ACATGTTAAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:121766658 original size:12 final size:12
Alignment explanation
Indices: 121766641--121766673 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
121766631 CGGCCCGCCC
121766641 ATATTAATTTTT
1 ATATTAATTTTT
121766653 ATATT-ATTTTT
1 ATATTAATTTTT
121766664 ATA-TAATTTT
1 ATATTAATTTT
121766674 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:121766843 original size:30 final size:31
Alignment explanation
Indices: 121766797--121766860 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
121766787 ACTTAATAAG
*
121766797 CAAAAGTCTCTAAAATAAT-AACAAAATTAA
1 CAAAAGTCTCTAAAATAATAAAAAAAATTAA
* *
121766827 CAAATGTCTTTAAAATAATAAAAAAAATTAA
1 CAAAAGTCTCTAAAATAATAAAAAAAATTAA
121766858 CAA
1 CAA
121766861 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 17 0.57
31 13 0.43
ACGTcount: A:0.61, C:0.11, G:0.03, T:0.25
Consensus pattern (31 bp):
CAAAAGTCTCTAAAATAATAAAAAAAATTAA
Found at i:121766945 original size:22 final size:22
Alignment explanation
Indices: 121766898--121766947 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
121766888 CAATAACAAC
* *
121766898 AAAATAGTAGCAACATAATAGT
1 AAAATAGTAGCAAAATAAGAGT
*
121766920 AAAATGGTAGCAAAATAAGGAG-
1 AAAATAGTAGCAAAATAA-GAGT
121766942 AAAATA
1 AAAATA
121766948 ACAAGAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.58, C:0.06, G:0.18, T:0.18
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAAGAGT
Found at i:121768119 original size:18 final size:18
Alignment explanation
Indices: 121768093--121768127 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
121768083 TCTATTACAG
*
121768093 ACACCACCAGCTCCTTCA
1 ACACCACCAACTCCTTCA
*
121768111 ACACGACCAACTCCTTC
1 ACACCACCAACTCCTTC
121768128 CACCATGCCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.49, G:0.06, T:0.17
Consensus pattern (18 bp):
ACACCACCAACTCCTTCA
Found at i:121769199 original size:15 final size:15
Alignment explanation
Indices: 121769179--121769222 Score: 88
Period size: 15 Copynumber: 2.9 Consensus size: 15
121769169 AGATATAAGT
121769179 GAGGTAGAAGACAAA
1 GAGGTAGAAGACAAA
121769194 GAGGTAGAAGACAAA
1 GAGGTAGAAGACAAA
121769209 GAGGTAGAAGACAA
1 GAGGTAGAAGACAA
121769223 TGGTGAAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.52, C:0.07, G:0.34, T:0.07
Consensus pattern (15 bp):
GAGGTAGAAGACAAA
Found at i:121779470 original size:21 final size:23
Alignment explanation
Indices: 121779420--121779463 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
121779410 TACCGACCCG
121779420 AACAAATTTACTAATTTTTTAAT
1 AACAAATTTACTAATTTTTTAAT
*
121779443 AATAAATTTA-T-ATTTTTTAAT
1 AACAAATTTACTAATTTTTTAAT
121779464 CCCAAATCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 10 0.50
22 1 0.05
23 9 0.45
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (23 bp):
AACAAATTTACTAATTTTTTAAT
Found at i:121784774 original size:27 final size:26
Alignment explanation
Indices: 121784721--121784769 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
121784711 TAAAAAATGA
121784721 TATGATATATTAGTGTATGTTATATGT
1 TATGATATATTAGTG-ATGTTATATGT
121784748 TATGATATATTAGTG-TG-TATAT
1 TATGATATATTAGTGATGTTATAT
121784770 TATGTATGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 5 0.23
25 2 0.09
27 15 0.68
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (26 bp):
TATGATATATTAGTGATGTTATATGT
Found at i:121784781 original size:9 final size:9
Alignment explanation
Indices: 121784763--121784843 Score: 56
Period size: 9 Copynumber: 8.6 Consensus size: 9
121784753 TATATTAGTG
121784763 TGTATATTA
1 TGTATATTA
*
121784772 TGTATGTTA
1 TGTATATTA
*
121784781 TGTATTTTA
1 TGTATATTA
*
121784790 TGATATACTA
1 TG-TATATTA
*
121784800 -GTATGTTA
1 TGTATATTA
*
121784808 TGTATTTTA
1 TGTATATTA
121784817 TGATATACTAATA
1 TG-TATA-T--TA
*
121784830 TGGATATTA
1 TGTATATTA
121784839 TGTAT
1 TGTAT
121784844 GGTATGTGTT
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
8 5 0.09
9 34 0.61
10 8 0.14
11 2 0.04
12 3 0.05
13 4 0.07
ACGTcount: A:0.31, C:0.02, G:0.15, T:0.52
Consensus pattern (9 bp):
TGTATATTA
Found at i:121784796 original size:40 final size:39
Alignment explanation
Indices: 121784726--121784801 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 39
121784716 AATGATATGA
*
121784726 TATATTAGTGTATGTTATATGTTATGATATATTAGTGTG
1 TATATTAGTGTATGTTATATGTTATGATATACTAGTGTG
*
121784765 TATATTA-TGTATGTTATGTATTTTATGATATACTAGT
1 TATATTAGTGTATGTTA--TATGTTATGATATACTAGT
121784802 ATGTTATGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 9 0.27
39 7 0.21
40 17 0.52
ACGTcount: A:0.29, C:0.01, G:0.17, T:0.53
Consensus pattern (39 bp):
TATATTAGTGTATGTTATATGTTATGATATACTAGTGTG
Found at i:121784807 original size:27 final size:27
Alignment explanation
Indices: 121784773--121784831 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
121784763 TGTATATTAT
121784773 GTATGTTATGTATTTTATGATATACTA
1 GTATGTTATGTATTTTATGATATACTA
121784800 GTATGTTATGTATTTTATGATATACTA
1 GTATGTTATGTATTTTATGATATACTA
*
121784827 ATATG
1 GTATG
121784832 GATATTATGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.03, G:0.15, T:0.51
Consensus pattern (27 bp):
GTATGTTATGTATTTTATGATATACTA
Found at i:121784818 original size:67 final size:66
Alignment explanation
Indices: 121784721--121784850 Score: 163
Period size: 67 Copynumber: 1.9 Consensus size: 66
121784711 TAAAAAATGA
* * * * * *
121784721 TATGATATATTAGTGTATGTTATATGTTATGATATATTAGTGTGTATATTATGTATGTTATGTAT
1 TATGATATACTAG-GTATGTTATATGTTATGATATACTAATATGGATATTATGTATGGTATGTAT
121784786 TT
65 TT
*
121784788 TATGATATACTA-GTATGTTATGTATTTTATGATATACTAATATGGATATTATGTATGGTATGT
1 TATGATATACTAGGTATGTTA--TATGTTATGATATACTAATATGGATATTATGTATGGTATGT
121784851 GTTAGACCCT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
65 8 0.15
67 46 0.85
ACGTcount: A:0.30, C:0.02, G:0.18, T:0.51
Consensus pattern (66 bp):
TATGATATACTAGGTATGTTATATGTTATGATATACTAATATGGATATTATGTATGGTATGTATT
T
Found at i:121787387 original size:25 final size:25
Alignment explanation
Indices: 121787351--121787419 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
121787341 TTTCCCGATT
* *
121787351 ATGGCTCTCATGAGCTTCTCGTTAC
1 ATGGCTCACATGAGCTTCTCATTAC
* *
121787376 ATGGCTCACATGAGCTTCCCATTAT
1 ATGGCTCACATGAGCTTCTCATTAC
121787401 ATGGCTCGA-ATGAGCTTCT
1 ATGGCTC-ACATGAGCTTCT
121787420 TGTTTATGTG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.33
Consensus pattern (25 bp):
ATGGCTCACATGAGCTTCTCATTAC
Found at i:121790877 original size:31 final size:31
Alignment explanation
Indices: 121790818--121790877 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
121790808 AGTCTTAAAC
* * *
121790818 ACCTTAGACAACATTTAGAATGACTTAAAGT
1 ACCTTAGACAACATTAAAAATAACTTAAAGT
* *
121790849 ACCTTAGCCAACATTAAAAATAATTTAAA
1 ACCTTAGACAACATTAAAAATAACTTAAA
121790878 AACATGTTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28
Consensus pattern (31 bp):
ACCTTAGACAACATTAAAAATAACTTAAAGT
Found at i:121795101 original size:19 final size:19
Alignment explanation
Indices: 121795073--121795111 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
121795063 TGATTTATGG
*
121795073 ATACATATGTA-ATAATAAT
1 ATACACATGTATA-AATAAT
121795092 ATACACATGTATAAATAAT
1 ATACACATGTATAAATAAT
121795111 A
1 A
121795112 AATAAGTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.33
Consensus pattern (19 bp):
ATACACATGTATAAATAAT
Found at i:121795153 original size:3 final size:3
Alignment explanation
Indices: 121795145--121795178 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
121795135 TCATATAATG
121795145 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
121795179 ATATATATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:121795969 original size:2 final size:2
Alignment explanation
Indices: 121795962--121796010 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
121795952 ATTGAATTAG
*
121795962 AT AT AT AT AT AT AT AT AT -T AT AA AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121796003 AT AT AT AT
1 AT AT AT AT
121796011 GTGTGTGTGA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:121803275 original size:20 final size:20
Alignment explanation
Indices: 121803250--121803287 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
121803240 GTTTCCCCTT
121803250 TATTTATTCAATGCCTCATG
1 TATTTATTCAATGCCTCATG
**
121803270 TATTTATTGTATGCCTCA
1 TATTTATTCAATGCCTCA
121803288 CCCTTTTCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (20 bp):
TATTTATTCAATGCCTCATG
Found at i:121805762 original size:16 final size:17
Alignment explanation
Indices: 121805738--121805771 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
121805728 TTCTCAGAAA
121805738 TAACCCTCTC-CATCCC
1 TAACCCTCTCACATCCC
*
121805754 TAACTCTCTCACATCCC
1 TAACCCTCTCACATCCC
121805771 T
1 T
121805772 CTTTTCCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.21, C:0.50, G:0.00, T:0.29
Consensus pattern (17 bp):
TAACCCTCTCACATCCC
Found at i:121810916 original size:8 final size:8
Alignment explanation
Indices: 121810869--121810906 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
121810859 TATTTTATTT
121810869 TATTTTAA
1 TATTTTAA
121810877 TATTTTAA
1 TATTTTAA
121810885 TATTTTAA
1 TATTTTAA
121810893 TATTTTAA
1 TATTTTAA
*
121810901 AATTTT
1 TATTTT
121810907 TTATATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:121817573 original size:2 final size:2
Alignment explanation
Indices: 121817566--121817600 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
121817556 AATCTGATGC
121817566 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121817601 CCTGTAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:121819906 original size:17 final size:18
Alignment explanation
Indices: 121819874--121819908 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
121819864 ATTCAATTAT
121819874 TATTTTAATATTTTTTTG
1 TATTTTAATATTTTTTTG
*
121819892 TATTTT-ATGTTTTTTTG
1 TATTTTAATATTTTTTTG
121819909 GAAAGAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (18 bp):
TATTTTAATATTTTTTTG
Found at i:121827980 original size:21 final size:21
Alignment explanation
Indices: 121827951--121827991 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
121827941 AGAACACGCC
*
121827951 AACAAAAGCTCGTGAGAGCTG
1 AACAAAAGCTCGTAAGAGCTG
* *
121827972 AACAGAAGCTCTTAAGAGCT
1 AACAAAAGCTCGTAAGAGCT
121827992 TATCCACCCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (21 bp):
AACAAAAGCTCGTAAGAGCTG
Found at i:121832420 original size:15 final size:16
Alignment explanation
Indices: 121832402--121832436 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
121832392 AATTGGAAAG
121832402 ATGAAAATTT-ATTAA
1 ATGAAAATTTAATTAA
*
121832417 ATGACAATTTAATTAA
1 ATGAAAATTTAATTAA
121832433 ATGA
1 ATGA
121832437 TAAGAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (16 bp):
ATGAAAATTTAATTAA
Found at i:121835924 original size:46 final size:46
Alignment explanation
Indices: 121835873--121836288 Score: 546
Period size: 46 Copynumber: 9.0 Consensus size: 46
121835863 GTGTGCTCTC
** * *
121835873 TGATATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
** *
121835919 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
** *
121835965 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* *
121836011 TGATATGAAATGAATAAGACCATGGTTGAAAGATGCCATGGAAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* ** *
121836057 TAATGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* *
121836103 TGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* * * *
121836149 TGACA-GAAAATGAATAAGACCATCGTTGAAAGATACCATGGCAGCG
1 TGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*
121836195 TGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * * * *
121836241 TGACATAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
121836287 TG
1 TG
121836289 TCAAAGATAA
Statistics
Matches: 336, Mismatches: 32, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.00
46 334 0.99
47 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:121837755 original size:93 final size:93
Alignment explanation
Indices: 121837643--121837814 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
121837633 GCCCATAAGT
*
121837643 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
121837707 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
121837736 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
121837801 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
121837815 CAAATATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 73 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:121837809 original size:46 final size:47
Alignment explanation
Indices: 121837635--121837810 Score: 220
Period size: 46 Copynumber: 3.8 Consensus size: 47
121837625 TGTAACCCGC
* *
121837635 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
*
121837681 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCAT
* *
121837731 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
*
121837774 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
121837811 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 1 0.01
46 62 0.55
47 31 0.28
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
Found at i:121839343 original size:16 final size:17
Alignment explanation
Indices: 121839322--121839354 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
121839312 ATGATGGTGC
121839322 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
121839338 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
121839355 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:121841611 original size:39 final size:39
Alignment explanation
Indices: 121841557--121841634 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
121841547 GACGTTATGA
121841557 ATAAATCTCAATTAATGAATTGTAATTTACACGAATTAT
1 ATAAATCTCAATTAATGAATTGTAATTTACACGAATTAT
*
121841596 ATAAATCTCAGTTAATGAATTGTAATTTACACGAATTAT
1 ATAAATCTCAATTAATGAATTGTAATTTACACGAATTAT
121841635 CTGAAAATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.38
Consensus pattern (39 bp):
ATAAATCTCAATTAATGAATTGTAATTTACACGAATTAT
Found at i:121843006 original size:23 final size:22
Alignment explanation
Indices: 121842974--121843017 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
121842964 AACCAATCCA
121842974 ATTCAACATATTT-TCAAGATAG
1 ATTCAACATATTTAT-AAGATAG
121842996 ATTCATACATATTTATAAGATA
1 ATTCA-ACATATTTATAAGATA
121843018 ACCTCATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 14 0.70
24 1 0.05
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (22 bp):
ATTCAACATATTTATAAGATAG
Found at i:121847467 original size:19 final size:20
Alignment explanation
Indices: 121847431--121847468 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
121847421 TTTGCCTATA
121847431 TTAACACAGTTGGGCCCATT
1 TTAACACAGTTGGGCCCATT
*
121847451 TTAATACAGTT-GGCCCAT
1 TTAACACAGTTGGGCCCAT
121847469 AACAAAACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (20 bp):
TTAACACAGTTGGGCCCATT
Found at i:121847727 original size:2 final size:2
Alignment explanation
Indices: 121847720--121847744 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
121847710 TGTATGCAGA
121847720 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
121847745 ATTAACAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121852477 original size:7 final size:7
Alignment explanation
Indices: 121852467--121852491 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
121852457 TCGTTTTAAG
121852467 TTTTATT
1 TTTTATT
121852474 TTTTATT
1 TTTTATT
121852481 TTTTATT
1 TTTTATT
121852488 TTTT
1 TTTT
121852492 TTCCTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:121863344 original size:29 final size:29
Alignment explanation
Indices: 121863311--121863380 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
121863301 TAGGGATTAG
*
121863311 ATCAAATTAGTTCATCTATTATTAAATA-A
1 ATCAAATTAGTTCATATATTATTAAA-AGA
* * * *
121863340 ATCAATTTAATCCTTATATTATTAAAAGA
1 ATCAAATTAGTTCATATATTATTAAAAGA
*
121863369 ATCAAATAAGTT
1 ATCAAATTAGTT
121863381 TAAATTGTAA
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
28 1 0.03
29 30 0.97
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (29 bp):
ATCAAATTAGTTCATATATTATTAAAAGA
Found at i:121865023 original size:2 final size:2
Alignment explanation
Indices: 121865016--121865058 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
121865006 AGATCTAGTG
121865016 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121865058 A
1 A
121865059 GAAATAAACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:121866285 original size:13 final size:14
Alignment explanation
Indices: 121866255--121866283 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
121866245 CATTCTCCCA
121866255 TTATGATCCTATTT
1 TTATGATCCTATTT
121866269 TTATGATCCTATTT
1 TTATGATCCTATTT
121866283 T
1 T
121866284 ATCTCATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATGATCCTATTT
Found at i:121868302 original size:35 final size:36
Alignment explanation
Indices: 121868234--121868316 Score: 114
Period size: 35 Copynumber: 2.3 Consensus size: 36
121868224 AGTACATCGA
* *
121868234 CAATCCAACCAAAACACACCAGATGCTCATAAGAGC
1 CAATCCATCCGAAACACACCAGATGCTCATAAGAGC
*
121868270 CAATCCATCCGAAACACACCA-ATGCTCGTAAGAGC
1 CAATCCATCCGAAACACACCAGATGCTCATAAGAGC
* *
121868305 TAATCCCTCCGA
1 CAATCCATCCGA
121868317 TTTTCTTTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 23 0.55
36 19 0.45
ACGTcount: A:0.39, C:0.35, G:0.12, T:0.14
Consensus pattern (36 bp):
CAATCCATCCGAAACACACCAGATGCTCATAAGAGC
Found at i:121868373 original size:22 final size:21
Alignment explanation
Indices: 121868347--121868391 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
121868337 CATGTAAAAA
121868347 ATATTAAGGACAATAT-ATGGAT
1 ATATTAAGGA-AAT-TGATGGAT
*
121868369 ATATTAATGAAATTGATGGAT
1 ATATTAAGGAAATTGATGGAT
121868390 AT
1 AT
121868392 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 1 0.05
21 11 0.52
22 9 0.43
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36
Consensus pattern (21 bp):
ATATTAAGGAAATTGATGGAT
Found at i:121868402 original size:21 final size:21
Alignment explanation
Indices: 121868363--121868402 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
121868353 AGGACAATAT
*
121868363 ATGGATATATTAATGAAATTG
1 ATGGATATATTAATAAAATTG
* *
121868384 ATGGATATTTTATTAAAAT
1 ATGGATATATTAATAAAAT
121868403 AATTTGTTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (21 bp):
ATGGATATATTAATAAAATTG
Found at i:121870741 original size:29 final size:28
Alignment explanation
Indices: 121870704--121870803 Score: 78
Period size: 29 Copynumber: 3.5 Consensus size: 28
121870694 ATCGTAAAAT
*
121870704 AAAATTTATAAAATATATAGAAATATAGA
1 AAAAATTATAAAATATATA-AAATATAGA
* * *
121870733 AAAAATTATAAATTTTTATAAAGTCATA-A
1 AAAAATTATAAA-ATATATAAAAT-ATAGA
* * *
121870762 GAAAATTATAAAAAATATAAAAT-TCGTA
1 AAAAATTATAAAATATATAAAATATAG-A
121870790 AAAAATTTATAAAA
1 AAAAA-TTATAAAA
121870804 ATTATTGTAC
Statistics
Matches: 55, Mismatches: 11, Indels: 10
0.72 0.14 0.13
Matches are distributed among these distances:
26 1 0.02
28 12 0.22
29 34 0.62
30 8 0.15
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (28 bp):
AAAAATTATAAAATATATAAAATATAGA
Found at i:121870765 original size:39 final size:38
Alignment explanation
Indices: 121870708--121870782 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 38
121870698 TAAAATAAAA
121870708 TTTATAAAATATATAG-AAATATAGAAAAAATTATAAATT
1 TTTATAAAATATATAGAAAAT-TAGAAAAAA-TATAAATT
* *
121870747 TTTATAAAGTCATA-AGAAAATTATAAAAAATATAAA
1 TTTATAAAAT-ATATAGAAAATTAGAAAAAATATAAA
121870783 ATTCGTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
38 6 0.19
39 19 0.59
40 7 0.22
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.33
Consensus pattern (38 bp):
TTTATAAAATATATAGAAAATTAGAAAAAATATAAATT
Found at i:121871006 original size:10 final size:9
Alignment explanation
Indices: 121870991--121871093 Score: 55
Period size: 9 Copynumber: 10.7 Consensus size: 9
121870981 TTTTGATGCA
121870991 TTTTATAAT
1 TTTTATAAT
*
121871000 TTATTATGAT
1 TT-TTATAAT
*
121871010 TTTTATAAAA
1 TTTTAT-AAT
* *
121871020 ATTTACAAT
1 TTTTATAAT
121871029 ATTTTATATAT
1 -TTTTATA-AT
*
121871040 ATTTT-TACAA
1 -TTTTATA-AT
*
121871050 TTTTATTAT
1 TTTTATAAT
121871059 TTTTATTAAAT
1 TTTTA-T-AAT
*
121871070 TTTAATAAT
1 TTTTATAAT
*
121871079 TTTTATAAA
1 TTTTATAAT
121871088 TTTTAT
1 TTTTAT
121871094 TGGTTTTTAT
Statistics
Matches: 71, Mismatches: 16, Indels: 14
0.70 0.16 0.14
Matches are distributed among these distances:
9 34 0.48
10 24 0.34
11 13 0.18
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (9 bp):
TTTTATAAT
Found at i:121871072 original size:19 final size:19
Alignment explanation
Indices: 121871029--121871104 Score: 75
Period size: 19 Copynumber: 3.9 Consensus size: 19
121871019 AATTTACAAT
*
121871029 ATTTTATATATATTT-TTACA
1 ATTTTAT-TATTTTTATTA-A
121871049 ATTTTATTATTTTTATTAA
1 ATTTTATTATTTTTATTAA
*
121871068 ATTTTAATAATTTTTA-TAA
1 ATTTT-ATTATTTTTATTAA
*
121871087 ATTTTATTGGTTTTTATT
1 ATTTTATT-ATTTTTATT
121871105 TTTTTATAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
18 2 0.04
19 26 0.54
20 20 0.42
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (19 bp):
ATTTTATTATTTTTATTAA
Found at i:121871412 original size:89 final size:87
Alignment explanation
Indices: 121871223--121871421 Score: 233
Period size: 89 Copynumber: 2.3 Consensus size: 87
121871213 GTCAAAGTGC
* * * * *
121871223 CTTTTTGATGCATTTTACAA-TTCAAGTACTTAATTGAGTGTAAAAAAATCAAGGGCTTAATTAC
1 CTTTTTAATGCATTTTAAAAGTTCAAGTACTCAATTGAGTGCAAAAAAAGCAAGGGCTTAATTAC
*
121871287 TTTTTTTGAAAAAGTTTGAGGGT
66 TTTTTTTGAAAAAG-TTAAGGGT
121871310 CTTTTTAATGCATTTTAAAAGTTCAAGTACTCAATTGAGTGCAAACAAAAGGC-AGAGGCTTAAT
1 CTTTTTAATGCATTTTAAAAGTTCAAGTACTCAATTGAGTGCAAA-AAAA-GCAAG-GGCTTAAT
**
121871374 TGTTTTTTTTTGAAAAAG-TAAGGGT
63 T-ACTTTTTTTGAAAAAGTTAAGGGT
* * *
121871399 CTTTTTCATGCATTGTGAAAGTT
1 CTTTTTAATGCATTTTAAAAGTT
121871422 TAAATACCTA
Statistics
Matches: 96, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
87 18 0.19
88 22 0.23
89 32 0.33
90 10 0.10
91 14 0.15
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (87 bp):
CTTTTTAATGCATTTTAAAAGTTCAAGTACTCAATTGAGTGCAAAAAAAGCAAGGGCTTAATTAC
TTTTTTTGAAAAAGTTAAGGGT
Found at i:121876907 original size:27 final size:27
Alignment explanation
Indices: 121876875--121876935 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
121876865 ATACATCTCA
121876875 TAGGGGCATAACAATCATTTTATCAAC
1 TAGGGGCATAACAATCATTTTATCAAC
* * *
121876902 TAGGGGTATAATAGTCATTTTATCAAC
1 TAGGGGCATAACAATCATTTTATCAAC
121876929 TAAGGGG
1 T-AGGGG
121876936 TCTAGGTACA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 25 0.83
28 5 0.17
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31
Consensus pattern (27 bp):
TAGGGGCATAACAATCATTTTATCAAC
Found at i:121879126 original size:20 final size:20
Alignment explanation
Indices: 121879088--121879135 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
121879078 TAAATTCTAA
* **
121879088 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
121879108 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
121879128 AAA-ATAAA
1 AAAGATAAA
121879136 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:121879146 original size:19 final size:18
Alignment explanation
Indices: 121879122--121879165 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
121879112 ATAAATAAAG
121879122 ATAATTAAAATAAAATCCTA
1 ATAATTAAAAT--AATCCTA
*
121879142 A-AATTTAAATAATCCTA
1 ATAATTAAAATAATCCTA
121879159 ATAATTA
1 ATAATTA
121879166 TCCTAATAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 8 0.38
20 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATTAAAATAATCCTA
Found at i:121879181 original size:15 final size:15
Alignment explanation
Indices: 121879161--121879193 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
121879151 TAATCCTAAT
121879161 AATTATCCTAATAGA
1 AATTATCCTAATAGA
*
121879176 AATTATCCTAATATA
1 AATTATCCTAATAGA
121879191 AAT
1 AAT
121879194 AAAATAGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.48, C:0.12, G:0.03, T:0.36
Consensus pattern (15 bp):
AATTATCCTAATAGA
Found at i:121879766 original size:7 final size:8
Alignment explanation
Indices: 121879752--121879785 Score: 50
Period size: 8 Copynumber: 4.0 Consensus size: 8
121879742 TTATTAATGA
121879752 CTTTTTTT
1 CTTTTTTT
121879760 CTTTTTTT
1 CTTTTTTT
121879768 CTTTTTTTTT
1 C--TTTTTTT
121879778 CTTTTTTT
1 CTTTTTTT
121879786 ATAGAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 16 0.67
10 8 0.33
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
CTTTTTTT
Found at i:121879774 original size:10 final size:10
Alignment explanation
Indices: 121879753--121879785 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
121879743 TATTAATGAC
121879753 TTTTTTTC--
1 TTTTTTTCTT
121879761 TTTTTTTCTT
1 TTTTTTTCTT
121879771 TTTTTTTCTT
1 TTTTTTTCTT
121879781 TTTTT
1 TTTTT
121879786 ATAGAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.35
10 15 0.65
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:121880736 original size:15 final size:14
Alignment explanation
Indices: 121880716--121880792 Score: 63
Period size: 15 Copynumber: 5.5 Consensus size: 14
121880706 TTAATATCTG
121880716 AAAATAATAAATAAT
1 AAAATAATAAA-AAT
*
121880731 AAAATAATAAGAA-
1 AAAATAATAAAAAT
121880744 AAAATAAATAAAAAT
1 AAAAT-AATAAAAAT
*
121880759 AACATAA-ACTAAAAT
1 AAAATAATA--AAAAT
*
121880774 AAAATAA-AAATA-
1 AAAATAATAAAAAT
121880786 AAAATAA
1 AAAATAA
121880793 AAATTGGGTT
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
12 7 0.13
13 9 0.17
14 11 0.21
15 26 0.49
ACGTcount: A:0.77, C:0.03, G:0.01, T:0.19
Consensus pattern (14 bp):
AAAATAATAAAAAT
Found at i:121880760 original size:6 final size:6
Alignment explanation
Indices: 121880721--121880796 Score: 56
Period size: 6 Copynumber: 13.5 Consensus size: 6
121880711 ATCTGAAAAT
* * * *
121880721 AATAAA TAAT-AA AATAAT AAGAAA AA-ATA AATAAA AAT-AA CAT-AA
1 AATAAA -AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
*
121880766 ACT-AA AAT-AA AATAAA AATAAA AATAAA AAT
1 AATAAA AATAAA AATAAA AATAAA AATAAA AAT
121880797 TGGGTTGCCT
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
5 23 0.40
6 31 0.54
7 3 0.05
ACGTcount: A:0.76, C:0.03, G:0.01, T:0.20
Consensus pattern (6 bp):
AATAAA
Found at i:121880765 original size:25 final size:24
Alignment explanation
Indices: 121880715--121880795 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 24
121880705 ATTAATATCT
121880715 GAAAATAATAAATAATAAA-ATAATAA
1 GAAAA-AATAAATAA-AAATA-AATAA
121880741 GAAAAAATAAATAAAAATAACATAA
1 GAAAAAATAAATAAAAATAA-ATAA
*
121880766 -ACTAAAATAAAATAAAAATAAA-AA
1 GA-AAAAAT-AAATAAAAATAAATAA
*
121880790 TAAAAA
1 GAAAAA
121880796 TTGGGTTGCC
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
24 10 0.21
25 21 0.44
26 17 0.35
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (24 bp):
GAAAAAATAAATAAAAATAAATAA
Found at i:121880771 original size:5 final size:5
Alignment explanation
Indices: 121880728--121880794 Score: 53
Period size: 5 Copynumber: 12.4 Consensus size: 5
121880718 AATAATAAAT
* * * *
121880728 AATAA AATAA TAAGAA AAAATA AATAAA AATAA CATAA ACTAA AATAA
1 AATAA AATAA -AATAA AATA-A AAT-AA AATAA AATAA AATAA AATAA
121880776 AATAAA AATAAA AATAA AA
1 AAT-AA AAT-AA AATAA AA
121880795 ATTGGGTTGC
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
5 28 0.55
6 22 0.43
7 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.01, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:121880794 original size:11 final size:11
Alignment explanation
Indices: 121880716--121880794 Score: 60
Period size: 10 Copynumber: 7.4 Consensus size: 11
121880706 TTAATATCTG
121880716 AAAATAATAAAT
1 AAAATAA-AAAT
*
121880728 AATAA-AATAAT
1 AA-AATAAAAAT
*
121880739 AAGA-AAAAAT
1 AAAATAAAAAT
121880749 -AAATAAAAAT
1 AAAATAAAAAT
* *
121880759 AACAT-AAACT
1 AAAATAAAAAT
121880769 AAAAT-AAAAT
1 AAAATAAAAAT
121880779 AAAAATAAAAAT
1 -AAAATAAAAAT
121880791 AAAA
1 AAAA
121880795 ATTGGGTTGC
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
9 2 0.04
10 24 0.44
11 17 0.31
12 9 0.17
13 2 0.04
ACGTcount: A:0.77, C:0.03, G:0.01, T:0.19
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:121882106 original size:5 final size:5
Alignment explanation
Indices: 121882096--121882121 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
121882086 TAAGCATTCG
121882096 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
121882122 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:121885304 original size:30 final size:30
Alignment explanation
Indices: 121885269--121885335 Score: 134
Period size: 30 Copynumber: 2.2 Consensus size: 30
121885259 GTTAAATTAA
121885269 AAATTAATTAATATAATAGTACAATAGCAT
1 AAATTAATTAATATAATAGTACAATAGCAT
121885299 AAATTAATTAATATAATAGTACAATAGCAT
1 AAATTAATTAATATAATAGTACAATAGCAT
121885329 AAATTAA
1 AAATTAA
121885336 AAATAAGCAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (30 bp):
AAATTAATTAATATAATAGTACAATAGCAT
Found at i:121889149 original size:10 final size:10
Alignment explanation
Indices: 121889134--121889165 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
121889124 TAAATACATT
121889134 TAATTAAAGA
1 TAATTAAAGA
121889144 TAATTAAAGA
1 TAATTAAAGA
121889154 TAATTAAA-A
1 TAATTAAAGA
121889163 TAA
1 TAA
121889166 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:121894138 original size:22 final size:22
Alignment explanation
Indices: 121894104--121894146 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
121894094 TGCCAATTAT
*
121894104 TAGCACATTAGTGCTCTCTGTA
1 TAGCACATTAGTGCTATCTGTA
121894126 TAGCAC-TTCAGTGCTATCTGT
1 TAGCACATT-AGTGCTATCTGT
121894147 TCGTTAGTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (22 bp):
TAGCACATTAGTGCTATCTGTA
Found at i:121895889 original size:17 final size:17
Alignment explanation
Indices: 121895867--121895909 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
121895857 TTTATCTATT
*
121895867 AATTACAAAGTTATTCC
1 AATTACAAAGTTAATCC
*
121895884 AATTACATAGTTAATCC
1 AATTACAAAGTTAATCC
121895901 -ATTA-AAAGT
1 AATTACAAAGT
121895910 ACCATGATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 4 0.17
16 4 0.17
17 15 0.65
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (17 bp):
AATTACAAAGTTAATCC
Found at i:121896531 original size:8 final size:8
Alignment explanation
Indices: 121896509--121896537 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
121896499 CATATTATTT
121896509 TAATTTAA
1 TAATTTAA
121896517 T-ATTTAA
1 TAATTTAA
121896524 TAATTTAA
1 TAATTTAA
121896532 TAATTT
1 TAATTT
121896538 TTTATTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (8 bp):
TAATTTAA
Found at i:121896610 original size:18 final size:17
Alignment explanation
Indices: 121896583--121896621 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
121896573 ATTATTTTAA
121896583 TATTTATATTAGAATAT
1 TATTTATATTAGAATAT
*
121896600 TATTATATATTAGTATA-
1 TATT-TATATTAGAATAT
121896617 TATTT
1 TATTT
121896622 TCTATTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 8 0.40
18 11 0.55
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (17 bp):
TATTTATATTAGAATAT
Found at i:121902656 original size:2 final size:2
Alignment explanation
Indices: 121902643--121902672 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
121902633 ATGATCAAAG
*
121902643 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121902673 TATCCTTACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:121903922 original size:34 final size:34
Alignment explanation
Indices: 121903884--121903951 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
121903874 CATCACAAGG
121903884 CTTGCTAGGCTTAAAGCCCGAATATCACTATTAA
1 CTTGCTAGGCTTAAAGCCCGAATATCACTATTAA
121903918 CTTGCTAGGCTTAAAGCCCGAATATCACTATTAA
1 CTTGCTAGGCTTAAAGCCCGAATATCACTATTAA
121903952 AAATTTATCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (34 bp):
CTTGCTAGGCTTAAAGCCCGAATATCACTATTAA
Found at i:121907692 original size:26 final size:26
Alignment explanation
Indices: 121907663--121907714 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
121907653 CTGCATATAA
*
121907663 ATGTCAATATCATTCTCGGGACCTTT
1 ATGTCAATATCATTCTAGGGACCTTT
121907689 ATGTCAATATCATTCTAGGGACCTTT
1 ATGTCAATATCATTCTAGGGACCTTT
121907715 CTCTCTGGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.38
Consensus pattern (26 bp):
ATGTCAATATCATTCTAGGGACCTTT
Done.