Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 423 of 444
Found at i:122366282 original size:20 final size:20
Alignment explanation
Indices: 122366257--122366295 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
122366247 AATGTAATTA
*
122366257 ATAATAATAATGATAAAATG
1 ATAATAATAATAATAAAATG
122366277 ATAATAATAATAATAAAAT
1 ATAATAATAATAATAAAAT
122366296 AAATAAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (20 bp):
ATAATAATAATAATAAAATG
Found at i:122366297 original size:17 final size:17
Alignment explanation
Indices: 122366256--122366289 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
122366246 TAATGTAATT
*
122366256 AATAATAATAATGATAA
1 AATAATAATAATAATAA
*
122366273 AATGATAATAATAATAA
1 AATAATAATAATAATAA
122366290 TAAAATAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
AATAATAATAATAATAA
Found at i:122366305 original size:26 final size:25
Alignment explanation
Indices: 122366255--122366324 Score: 79
Period size: 26 Copynumber: 2.8 Consensus size: 25
122366245 CTAATGTAAT
* *
122366255 TAATAATAATAATGATAAAATGATAA
1 TAATAATAATAA-AATAAAAAGATAA
122366281 TAATAATAATAAAATAAATAAGATAA
1 TAATAATAATAAAATAAA-AAGATAA
**
122366307 TCTTAA-AATAAAATAAAA
1 TAATAATAATAAAATAAAA
122366325 TGGAAAACGC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 16 0.41
26 22 0.56
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (25 bp):
TAATAATAATAAAATAAAAAGATAA
Found at i:122375412 original size:42 final size:42
Alignment explanation
Indices: 122375348--122375495 Score: 181
Period size: 42 Copynumber: 3.5 Consensus size: 42
122375338 ACGAAGGAAG
* * *
122375348 AGTGGCAGTTTTATCTGCAAATATGTTGTGCGTCCATAACCC
1 AGTGACAGTTTTATCTGCAAATATGTTGTGCATCCACAACCC
* * * *
122375390 AATGACAGTTTTATTTGCAAATATGTTGTGCATCCACCACCT
1 AGTGACAGTTTTATCTGCAAATATGTTGTGCATCCACAACCC
* * *
122375432 AGTGGCAATTTTATCTACAAATATGTTGTGCATCCACAACCC
1 AGTGACAGTTTTATCTGCAAATATGTTGTGCATCCACAACCC
*
122375474 AGT-AGCAGTTTTATCTGTAAAT
1 AGTGA-CAGTTTTATCTGCAAAT
122375496 GTTTTATCTA
Statistics
Matches: 87, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.34
Consensus pattern (42 bp):
AGTGACAGTTTTATCTGCAAATATGTTGTGCATCCACAACCC
Found at i:122377068 original size:40 final size:39
Alignment explanation
Indices: 122376983--122377082 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 39
122376973 GAACATTATC
* ** *
122376983 ACAGTTTGGGCCTAAGCCTTTTTCCGTAACGGAATCAGCT
1 ACAGTTT-GGCCTTAGCCCATTTCAGTAACGGAATCAGCT
*
122377023 TCAGTTTGGCCTTAGCCCATTTCAGT-ACGGAATCAGTCAT
1 ACAGTTTGGCCTTAGCCCATTTCAGTAACGGAATCAG-C-T
*
122377063 ACAGTTGGGCCTTAGCCCAT
1 ACAGTTTGGCCTTAGCCCAT
122377083 CAATGTATCA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
38 10 0.20
39 16 0.31
40 25 0.49
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (39 bp):
ACAGTTTGGCCTTAGCCCATTTCAGTAACGGAATCAGCT
Found at i:122385313 original size:128 final size:125
Alignment explanation
Indices: 122385166--122385433 Score: 405
Period size: 129 Copynumber: 2.1 Consensus size: 125
122385156 CTGATTATGT
* *
122385166 GTATGTATGATATGTGATATGCGTCTAATGTATGTAAGATATGTCAATATT-TTATATATGTATG
1 GTATGTATGATATGTGATATGCATCTAATGCATGTAAGATATGTCAATATTATTATATATGTATG
*
122385230 TATGTCATGATATGCATGTAACAGAC-TCTAATATATATGCATGATATATAACTAACTTTACTAA
66 TATGTCATAATATGCATGTAACAGACTTC-AATATATATGCATGATATATAACTAA-TTT--T-A
*
122385294 GTATGTATGATATGTGATATGCATCTAATGCATGTATGATATGTCAATATTATTATATATGTATG
1 GTATGTATGATATGTGATATGCATCTAATGCATGTAAGATATGTCAATATTATTATATATGTATG
* * *
122385359 TATGTCATAATTTGCATGTTACAGACTTCAATATATATGCATGATATGTAACTAATTTTA
66 TATGTCATAATATGCATGTAACAGACTTCAATATATATGCATGATATATAACTAATTTTA
*
122385419 TTATGTATGATATGT
1 GTATGTATGATATGT
122385434 TCATATTATA
Statistics
Matches: 130, Mismatches: 8, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
125 15 0.12
126 1 0.01
128 51 0.39
129 61 0.47
130 2 0.02
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.42
Consensus pattern (125 bp):
GTATGTATGATATGTGATATGCATCTAATGCATGTAAGATATGTCAATATTATTATATATGTATG
TATGTCATAATATGCATGTAACAGACTTCAATATATATGCATGATATATAACTAATTTTA
Found at i:122385474 original size:5 final size:5
Alignment explanation
Indices: 122385464--122385495 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
122385454 TATGTGTGTG
122385464 TGATA TGATA TGATA TGATA TGATA TGATA TG
1 TGATA TGATA TGATA TGATA TGATA TGATA TG
122385496 TAACATACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.22, T:0.41
Consensus pattern (5 bp):
TGATA
Found at i:122403734 original size:28 final size:28
Alignment explanation
Indices: 122403694--122403754 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
122403684 ACTTCGTATG
*
122403694 ATAGTTTCAAGAGAGAAGGGAAATTGTT
1 ATAGTTTCAAGAGAAAAGGGAAATTGTT
122403722 ATAGTTTCAAGAGAAAAGGGAAATTGTT
1 ATAGTTTCAAGAGAAAAGGGAAATTGTT
*
122403750 GTAGT
1 ATAGT
122403755 AAACACCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.03, G:0.28, T:0.30
Consensus pattern (28 bp):
ATAGTTTCAAGAGAAAAGGGAAATTGTT
Found at i:122407279 original size:17 final size:17
Alignment explanation
Indices: 122407231--122407281 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
122407221 AAAAACCTAA
122407231 AAAATAATTA-AAAGTAT
1 AAAATAATTATAAA-TAT
*
122407248 AAAA-AATTGTAAATAT
1 AAAATAATTATAAATAT
*
122407264 AAAATATTTATAAATAT
1 AAAATAATTATAAATAT
122407281 A
1 A
122407282 TATAATTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 11 0.38
17 18 0.62
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (17 bp):
AAAATAATTATAAATAT
Found at i:122407306 original size:26 final size:27
Alignment explanation
Indices: 122407275--122407325 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
122407265 AAATATTTAT
122407275 AAATATATATA-A-TTTTTTAAAATTAG
1 AAATATAT-TAGATTTTTTTAAAATTAG
*
122407301 AAATATGTTAGATTTTTTTAAAATT
1 AAATATATTAGATTTTTTTAAAATT
122407326 TGTACAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 2 0.09
26 8 0.36
27 12 0.55
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (27 bp):
AAATATATTAGATTTTTTTAAAATTAG
Found at i:122407369 original size:9 final size:9
Alignment explanation
Indices: 122407357--122407421 Score: 58
Period size: 9 Copynumber: 7.0 Consensus size: 9
122407347 AAAAACTTTC
122407357 AAAAATTAT
1 AAAAATTAT
*
122407366 AAAATTTATT
1 AAAAATTA-T
* *
122407376 AGAAATTGT
1 AAAAATTAT
*
122407385 AAAAAATATT
1 AAAAATTA-T
*
122407395 AAAAATTAA
1 AAAAATTAT
*
122407404 AAAAATAAT
1 AAAAATTAT
122407413 AAAAATTAT
1 AAAAATTAT
122407422 TGTATCTTGG
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
9 28 0.67
10 14 0.33
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:122407381 original size:19 final size:19
Alignment explanation
Indices: 122407357--122407421 Score: 78
Period size: 19 Copynumber: 3.5 Consensus size: 19
122407347 AAAAACTTTC
**
122407357 AAAAATTATAAAATTTATT
1 AAAAATTATAAAAAATATT
* *
122407376 AGAAATTGTAAAAAATATT
1 AAAAATTATAAAAAATATT
*
122407395 AAAAATTA-AAAAAATAAT
1 AAAAATTATAAAAAATATT
122407413 AAAAATTAT
1 AAAAATTAT
122407422 TGTATCTTGG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
18 17 0.45
19 21 0.55
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (19 bp):
AAAAATTATAAAAAATATT
Found at i:122418178 original size:2 final size:2
Alignment explanation
Indices: 122418171--122418217 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
122418161 ATAAATATTG
*
122418171 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122418213 A- AT AT
1 AT AT AT
122418218 TTTAGATCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:122422999 original size:23 final size:23
Alignment explanation
Indices: 122422973--122423026 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
122422963 GTTTACTTAT
122422973 ATTATAAATA-AATAATAATAATA
1 ATTATAAATATAATAATAAT-ATA
*
122422996 ATTACTAAAATATAGTAATAATATA
1 ATTA-T-AAATATAATAATAATATA
122423021 A-TATAA
1 ATTATAA
122423027 GAGTTAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
22 2 0.07
23 5 0.19
24 3 0.11
25 9 0.33
26 8 0.30
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (23 bp):
ATTATAAATATAATAATAATATA
Found at i:122423287 original size:29 final size:29
Alignment explanation
Indices: 122423253--122423310 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
122423243 TTTAGAAAGT
122423253 TAGTGAATTTTTAAATGTTGATTAAGTTG
1 TAGTGAATTTTTAAATGTTGATTAAGTTG
122423282 TAGTGAATTTTTAAATGTTGATTAAGTTG
1 TAGTGAATTTTTAAATGTTGATTAAGTTG
122423311 AACAATTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (29 bp):
TAGTGAATTTTTAAATGTTGATTAAGTTG
Found at i:122425620 original size:11 final size:11
Alignment explanation
Indices: 122425604--122425634 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
122425594 GAATTTTGGC
122425604 AAGATTCATAA
1 AAGATTCATAA
*
122425615 AAGATTCGTAA
1 AAGATTCATAA
122425626 AAGATTCAT
1 AAGATTCAT
122425635 TAATTTTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.29
Consensus pattern (11 bp):
AAGATTCATAA
Found at i:122425886 original size:13 final size:12
Alignment explanation
Indices: 122425854--122425888 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
122425844 AAGAAAGGAA
122425854 AGAAAAGAAAAG
1 AGAAAAGAAAAG
*
122425866 AGAGAAGAAATAG
1 AGAAAAGAAA-AG
122425879 AGAAAAGAAA
1 AGAAAAGAAA
122425889 GAAAATCCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (12 bp):
AGAAAAGAAAAG
Found at i:122428248 original size:29 final size:29
Alignment explanation
Indices: 122428210--122428265 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
122428200 TAAATACTAA
122428210 TTTAATTTATAATCCACTCCTTATATAAT
1 TTTAATTTATAATCCACTCCTTATATAAT
*
122428239 TTTAATTTATAATCTACTCCTTATATA
1 TTTAATTTATAATCCACTCCTTATATA
122428266 TTTAGTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.34, C:0.16, G:0.00, T:0.50
Consensus pattern (29 bp):
TTTAATTTATAATCCACTCCTTATATAAT
Found at i:122437092 original size:17 final size:18
Alignment explanation
Indices: 122437052--122437094 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
122437042 TTATCTCGAT
122437052 CTTTATATTTATTTTTTTA
1 CTTTAT-TTTATTTTTTTA
122437071 CTTTATTTTATTTTTTTA
1 CTTTATTTTATTTTTTTA
122437089 -TTTATT
1 CTTTATT
122437095 AACTTACTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 6 0.25
18 12 0.50
19 6 0.25
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.77
Consensus pattern (18 bp):
CTTTATTTTATTTTTTTA
Found at i:122438098 original size:17 final size:17
Alignment explanation
Indices: 122438076--122438109 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
122438066 AAATTTCCCT
122438076 ATATATTATTTATTTTA
1 ATATATTATTTATTTTA
122438093 ATATATTATTTATTTTA
1 ATATATTATTTATTTTA
122438110 TTTTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
ATATATTATTTATTTTA
Found at i:122438199 original size:25 final size:25
Alignment explanation
Indices: 122438153--122438212 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
122438143 TAATATTTAA
* *
122438153 TTTAAACTGTTTTATATGTTATTCAC
1 TTTAAA-TTTTTTATATATTATTCAC
* *
122438179 TTTAAATTTTTTATATATTATTTAT
1 TTTAAATTTTTTATATATTATTCAC
122438204 TTTAAATTT
1 TTTAAATTT
122438213 CACTTTTACA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 24 0.80
26 6 0.20
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (25 bp):
TTTAAATTTTTTATATATTATTCAC
Found at i:122438304 original size:26 final size:23
Alignment explanation
Indices: 122438179--122438314 Score: 80
Period size: 22 Copynumber: 5.5 Consensus size: 23
122438169 TGTTATTCAC
*
122438179 TTTAAATTTTTTATATATTATTTAT
1 TTTAAATTTCTT-TATA-TATTTAT
*
122438204 TTTAAATTTCACTTTTACATATTATTAT
1 TTTAAATTT--C-TTTATATA-T-TTAT
* ***
122438232 TTTGAGCCTC-TTA-ATATTTAT
1 TTTAAATTTCTTTATATATTTAT
122438253 TTTAAATTTCTTTATATA-TTAT
1 TTTAAATTTCTTTATATATTTAT
122438275 TTTAAACTTGTCTTTACGTATATTTAT
1 TTTAAA-TT-TCTTTA--TATATTTAT
*
122438302 TTAAAATTATCTT
1 TTTAAATT-TCTT
122438315 ATACAACTAA
Statistics
Matches: 87, Mismatches: 12, Indels: 23
0.71 0.10 0.19
Matches are distributed among these distances:
21 10 0.11
22 14 0.16
23 8 0.09
24 9 0.10
25 9 0.10
26 13 0.15
27 13 0.15
28 11 0.13
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (23 bp):
TTTAAATTTCTTTATATATTTAT
Found at i:122438429 original size:2 final size:2
Alignment explanation
Indices: 122438418--122438456 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
122438408 ACCTATTTTA
122438418 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122438457 CATCTATTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:122442214 original size:25 final size:27
Alignment explanation
Indices: 122442177--122442226 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
122442167 TCAAACATGC
122442177 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGTCAATTTAACTCCTAGGGGT
* *
122442203 ATTTCAGT-AATTTATCTCCTAGGG
1 ATTTAAGTCAATTTAACTCCTAGGG
122442227 ATAAAATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (27 bp):
ATTTAAGTCAATTTAACTCCTAGGGGT
Found at i:122443750 original size:26 final size:26
Alignment explanation
Indices: 122443714--122443797 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
122443704 CATGAAATTC
122443714 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
122443740 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
122443766 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
122443792 TTATCA
1 TTATCA
122443798 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:122446573 original size:14 final size:13
Alignment explanation
Indices: 122446554--122446594 Score: 57
Period size: 14 Copynumber: 3.2 Consensus size: 13
122446544 ATATTTGTTC
122446554 TTGTTCTTAATTAT
1 TTGTTCTTAA-TAT
*
122446568 TTGTTCTTAATAC
1 TTGTTCTTAATAT
122446581 TTGTT-TTAATAT
1 TTGTTCTTAATAT
122446593 TT
1 TT
122446595 TCAAGATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 8 0.32
13 7 0.28
14 10 0.40
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (13 bp):
TTGTTCTTAATAT
Found at i:122453631 original size:46 final size:46
Alignment explanation
Indices: 122453579--122453759 Score: 299
Period size: 46 Copynumber: 3.9 Consensus size: 46
122453569 AGTGTGCTCT
* *
122453579 CTGATATGAAATGTGTAAGACCATGGTTGTAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
122453625 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
122453671 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
* * ** *
122453717 GTGACATGAAATGAATAAGACCATGGTTGAAAGATATCATGGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC
122453760 CACATTACAG
Statistics
Matches: 128, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 128 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
Found at i:122453775 original size:46 final size:46
Alignment explanation
Indices: 122453579--122453806 Score: 280
Period size: 46 Copynumber: 5.0 Consensus size: 46
122453569 AGTGTGCTCT
* * * *
122453579 CTGATATGAAATGTGTAAGACCATGGTTGTAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGC
* *
122453625 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGC
* *
122453671 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGC
* * *
122453717 GTGACATGAAATGAATAAGACCATGGTTGAAAGATATCATGGCCA-C
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGG-CAGC
* * * * *
122453763 ATTACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
122453807 TCACGTCAAA
Statistics
Matches: 166, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
45 3 0.02
46 161 0.97
47 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGC
Found at i:122466539 original size:21 final size:21
Alignment explanation
Indices: 122466513--122466554 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
122466503 ATTAAAAAGA
122466513 CCAAATTAAAAAAACTTGCAT
1 CCAAATTAAAAAAACTTGCAT
*
122466534 CCAAATTAAAAAAAGTTGCAT
1 CCAAATTAAAAAAACTTGCAT
122466555 TCTCAGGACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.52, C:0.17, G:0.07, T:0.24
Consensus pattern (21 bp):
CCAAATTAAAAAAACTTGCAT
Found at i:122466949 original size:18 final size:18
Alignment explanation
Indices: 122466928--122466962 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
122466918 AACGATACAG
*
122466928 AAAAGCAAAACGAAAAAA
1 AAAAGAAAAACGAAAAAA
*
122466946 AAAAGAAAAAGGAAAAA
1 AAAAGAAAAACGAAAAA
122466963 GAAACAGATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.80, C:0.06, G:0.14, T:0.00
Consensus pattern (18 bp):
AAAAGAAAAACGAAAAAA
Found at i:122467663 original size:24 final size:24
Alignment explanation
Indices: 122467636--122467682 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
122467626 ATTGAAATAG
122467636 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
122467660 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
122467683 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:122469509 original size:18 final size:18
Alignment explanation
Indices: 122469473--122469510 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
122469463 GTTTTATGCT
* *
122469473 TTAATCTACCTCTCGTAC
1 TTAATCTACCTCACATAC
122469491 TTAATCTACCTCACATAC
1 TTAATCTACCTCACATAC
122469509 TT
1 TT
122469511 GAGCTATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.32, G:0.03, T:0.39
Consensus pattern (18 bp):
TTAATCTACCTCACATAC
Found at i:122469779 original size:18 final size:18
Alignment explanation
Indices: 122469756--122469793 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
122469746 GTTCGAGACC
122469756 ACCAAATCCAAAAAATGA
1 ACCAAATCCAAAAAATGA
*
122469774 ACCAAATCCGAAAAATGA
1 ACCAAATCCAAAAAATGA
122469792 AC
1 AC
122469794 TCATAGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.58, C:0.24, G:0.08, T:0.11
Consensus pattern (18 bp):
ACCAAATCCAAAAAATGA
Found at i:122471546 original size:25 final size:25
Alignment explanation
Indices: 122471517--122471568 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
122471507 AAGAATAATT
**
122471517 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCCGATATTGCCTAATAAA
* *
122471542 TGAATATCCGATATTGCTTAGTAAA
1 TGAATATCCGATATTGCCTAATAAA
122471567 TG
1 TG
122471569 CCAAGCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (25 bp):
TGAATATCCGATATTGCCTAATAAA
Found at i:122473011 original size:19 final size:18
Alignment explanation
Indices: 122472980--122473015 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
122472970 AATACTAAAA
*
122472980 AAAATTATTAAAAAAATT
1 AAAATTATCAAAAAAATT
122472998 AAAATATATCAAAAAAAT
1 AAAAT-TATCAAAAAAAT
122473016 CAAGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
AAAATTATCAAAAAAATT
Found at i:122473304 original size:22 final size:21
Alignment explanation
Indices: 122473269--122473344 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
122473259 AAAATGTATC
* *
122473269 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
122473290 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
122473313 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
122473332 TGC-AATCATATCT
1 TACAAATCATATCT
122473345 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:122473361 original size:35 final size:37
Alignment explanation
Indices: 122473298--122473395 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
122473288 ATTACAAAAT
122473298 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
122473334 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
122473369 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
122473396 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:122473403 original size:17 final size:19
Alignment explanation
Indices: 122473305--122473395 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
122473295 AATCATATCT
122473305 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
122473324 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
122473342 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
122473359 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
122473378 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
122473396 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:122473799 original size:45 final size:45
Alignment explanation
Indices: 122473744--122473934 Score: 249
Period size: 45 Copynumber: 4.3 Consensus size: 45
122473734 GGAAGGTGAT
* ** *
122473744 ATCTGCTATCTTTGATCTGCTCCCCATCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
122473789 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAAAGACGCCAA
1 ATCTGTTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
122473834 ATCTGCT-TCTTCAATCTGCTCACCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
122473878 ATCTGTTATCTCCAATTTTCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
122473923 ATCTGTCATCTT
1 ATCTGTTATCTT
122473935 AGGTTTGCTT
Statistics
Matches: 129, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
44 39 0.30
45 90 0.70
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:122473869 original size:89 final size:90
Alignment explanation
Indices: 122473744--122473927 Score: 262
Period size: 89 Copynumber: 2.1 Consensus size: 90
122473734 GGAAGGTGAT
** * * *
122473744 ATCTGCTATCTTTGATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCAATCTGCTCACCATCTAATACAGAGACGCCAAATCTGTTATCTCCAATCTGC
122473809 TCCCCGTCTAATACAAAGACGCCAA
66 TCCCCGTCTAATACAAAGACGCCAA
* * * *
122473834 ATCTGCT-TCTTCAATCTGCTCACCGTCTAATACAGAGATGCCAAATCTGTTATCTCCAATTTTC
1 ATCTGCTATCTTCAATCTGCTCACCATCTAATACAGAGACGCCAAATCTGTTATCTCCAATCTGC
* *
122473898 TCCCCGTCTAATACAGAGATGCCAA
66 TCCCCGTCTAATACAAAGACGCCAA
122473923 ATCTG
1 ATCTG
122473928 TCATCTTAGG
Statistics
Matches: 83, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
89 76 0.92
90 7 0.08
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCTCACCATCTAATACAGAGACGCCAAATCTGTTATCTCCAATCTGC
TCCCCGTCTAATACAAAGACGCCAA
Found at i:122474086 original size:78 final size:78
Alignment explanation
Indices: 122473957--122474328 Score: 586
Period size: 78 Copynumber: 4.8 Consensus size: 78
122473947 ATGTAAACAC
*
122473957 ATGAAGGTCAGATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
122474022 TGGATCTACTTCA
66 TGGATCTGCTTCA
* *
122474035 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTTTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
122474099 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
122474113 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTTCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
122474178 TGGATCTGCTTCA
66 TGGATCTGCTTCA
*
122474191 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
122474256 TGGATCTG-TTTA
66 TGGATCTGCTTCA
* * * * ** *
122474268 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGATCTCCGTCGAATATGGAGATGTCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
122474329 TGTTTCTTCG
Statistics
Matches: 274, Mismatches: 18, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
77 58 0.21
78 214 0.78
79 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:122474146 original size:37 final size:37
Alignment explanation
Indices: 122474097--122474224 Score: 98
Period size: 37 Copynumber: 3.4 Consensus size: 37
122474087 TGCCAAATCA
*
122474097 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTG
1 TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTGTG
** * ** ** *
122474134 TCTTCGATCTGCTTCCCGTCTAA--TACAGAGATGCCAAATCA
1 TCTTCGATCTGCTT-CAAT-GAAGGT-CAGATCTG-C-TGT-G
*
122474175 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTG
1 TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTGTG
122474212 TCTTCGATCTGCT
1 TCTTCGATCTGCT
122474225 CCCCGTCTAA
Statistics
Matches: 64, Mismatches: 19, Indels: 16
0.65 0.19 0.16
Matches are distributed among these distances:
37 26 0.41
38 9 0.14
39 6 0.09
40 9 0.14
41 14 0.22
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.34
Consensus pattern (37 bp):
TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTGTG
Found at i:122486076 original size:17 final size:18
Alignment explanation
Indices: 122486054--122486088 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
122486044 GATATGATAC
*
122486054 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
122486071 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
122486089 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:122486377 original size:22 final size:21
Alignment explanation
Indices: 122486342--122486417 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
122486332 AAAAGGTATC
* *
122486342 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
122486363 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
122486386 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
122486405 TGC-AATCATATCT
1 TACAAATCATATCT
122486418 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:122486434 original size:35 final size:37
Alignment explanation
Indices: 122486371--122486449 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
122486361 ATTACAAAAT
122486371 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
122486407 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
122486442 CATATCAT
1 CATATCAT
122486450 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:122486447 original size:14 final size:15
Alignment explanation
Indices: 122486392--122486447 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
122486382 AGATTGCATA
122486392 TCATATCTAAGATTG
1 TCATATCTAAGATTG
122486407 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
122486425 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
122486442 -CATATC
1 TCATATC
122486448 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:122486457 original size:17 final size:19
Alignment explanation
Indices: 122486378--122486449 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
122486368 AATCATATCT
122486378 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
122486397 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
122486415 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
122486432 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
122486450 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:122486672 original size:17 final size:17
Alignment explanation
Indices: 122486650--122486682 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
122486640 TTAATTTAAA
122486650 TAAATTAATTTCTCAAT
1 TAAATTAATTTCTCAAT
*
122486667 TAAATTATTTTCTCAA
1 TAAATTAATTTCTCAA
122486683 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATTAATTTCTCAAT
Found at i:122488975 original size:47 final size:47
Alignment explanation
Indices: 122488918--122489045 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 47
122488908 TTAATCGACA
*
122488918 AGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCTCGG
1 AGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCTAGG
* * * * * *
122488965 AGTACTTATACCATAGCCCGCAGCTAAATCAAGGTAACTTCTCTATG
1 AGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCTAGG
* * * *
122489012 AATACCTATACTATGGCCGGTAGCCAAATCAAGG
1 AGTACCTATACCATGGCCCGAAGCCAAATCAAGG
122489046 CATTTTTTGC
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCTAGG
Found at i:122489646 original size:28 final size:29
Alignment explanation
Indices: 122489582--122489646 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
122489572 TTTTCATTTA
* *
122489582 TTTCACAATTTAACCTCTCAATTTACACT
1 TTTCTCAATTTAACCTCTCAATTGACACT
*
122489611 TTTCTCAATTTAATCC-CT-AATTGACATT
1 TTTCTCAATTTAA-CCTCTCAATTGACACT
*
122489639 TTTGTCAA
1 TTTCTCAA
122489647 AAATCACTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 15 0.48
29 14 0.45
30 2 0.06
ACGTcount: A:0.29, C:0.23, G:0.03, T:0.45
Consensus pattern (29 bp):
TTTCTCAATTTAACCTCTCAATTGACACT
Found at i:122493819 original size:21 final size:20
Alignment explanation
Indices: 122493793--122493848 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
122493783 CATGTTTACT
122493793 TTCTGTTTAGCTCTCACGAGC
1 TTCTGTTTAGCTCT-ACGAGC
* *
122493814 TTCTGTTTAACTCATATGAGC
1 TTCTGTTTAGCTC-TACGAGC
*
122493835 TTCTGTTAAGCTCT
1 TTCTGTTTAGCTCT
122493849 TTTAAGCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 1 0.03
21 28 0.93
22 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.43
Consensus pattern (20 bp):
TTCTGTTTAGCTCTACGAGC
Found at i:122493891 original size:42 final size:42
Alignment explanation
Indices: 122493792--122493931 Score: 104
Period size: 42 Copynumber: 3.4 Consensus size: 42
122493782 TCATGTTTAC
* * * * * * * *
122493792 TTTCTGTTTAGCTCTCACGAGCTTCTGTTTAACTCATATGAG
1 TTTCTATTAAGCTCTTACAAGCTTTTATTTAACTCTTATGGG
* * **
122493834 CTTCTGTTAAGCTCTTTTAAGCTTTTATTTAACTCTTATGGG
1 TTTCTATTAAGCTCTTACAAGCTTTTATTTAACTCTTATGGG
* * * *
122493876 TTTCTATTCAA-CTCTTACGAGCTTTTGTTCAACCCTTATGGG
1 TTTCTATT-AAGCTCTTACAAGCTTTTATTTAACTCTTATGGG
*
122493918 TTTCTGTT-AGCTCT
1 TTTCTATTAAGCTCT
122493932 CATGAGCTTC
Statistics
Matches: 77, Mismatches: 19, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
40 1 0.01
41 4 0.05
42 70 0.91
43 2 0.03
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (42 bp):
TTTCTATTAAGCTCTTACAAGCTTTTATTTAACTCTTATGGG
Found at i:122493906 original size:21 final size:21
Alignment explanation
Indices: 122493810--122493945 Score: 73
Period size: 21 Copynumber: 6.5 Consensus size: 21
122493800 TAGCTCTCAC
* * *
122493810 GAGCTTCTGTTTAACTCATAT
1 GAGCTTTTGTTCAACTCTTAT
* *
122493831 GAGCTTCTGTT-AAGCTCTTTT
1 GAGCTTTTGTTCAA-CTCTTAT
* * *
122493852 AAGCTTTTATTTAACTCTTAT
1 GAGCTTTTGTTCAACTCTTAT
* * *
122493873 G-GGTTTCTATTCAACTCTTAC
1 GAGCTTT-TGTTCAACTCTTAT
*
122493894 GAGCTTTTGTTCAACCCTTAT
1 GAGCTTTTGTTCAACTCTTAT
* * *
122493915 G-GGTTTCTGTT-AGCTCTCAT
1 GAGCTTT-TGTTCAACTCTTAT
*
122493935 GAGCTTCTGTT
1 GAGCTTTTGTT
122493946 TAGCCTTCGG
Statistics
Matches: 89, Mismatches: 20, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
20 21 0.24
21 62 0.70
22 6 0.07
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (21 bp):
GAGCTTTTGTTCAACTCTTAT
Found at i:122498571 original size:34 final size:33
Alignment explanation
Indices: 122498496--122498581 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
122498486 TCTGGGCCAT
* * *
122498496 GCCGTATGACCCACATGGGCGAGGCCAACTTGG
1 GCCGTGTGACCCACACGGGCAAGGCCAACTTGG
* *
122498529 GTCATGTGACCCACACGGGCAAGGCCAACTTTGG
1 GCCGTGTGACCCACACGGGCAAGGCCAAC-TTGG
122498563 GCCGTGTGACCCACACGGG
1 GCCGTGTGACCCACACGGG
122498582 TGTGTGGGCC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
33 24 0.53
34 21 0.47
ACGTcount: A:0.21, C:0.31, G:0.33, T:0.15
Consensus pattern (33 bp):
GCCGTGTGACCCACACGGGCAAGGCCAACTTGG
Found at i:122499029 original size:40 final size:40
Alignment explanation
Indices: 122498966--122499046 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
122498956 TGCGGTACCT
* *
122498966 TATGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCATA
1 TATGGTGTGCAGGGATGGATGGGTCGATTATATCCCCATA
* *
122499006 TATGGTGTGCAGGGATGGGTGGGTCGATTTTATCCCCATA
1 TATGGTGTGCAGGGATGGATGGGTCGATTATATCCCCATA
122499046 T
1 T
122499047 GATGTGATGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.19, C:0.14, G:0.33, T:0.35
Consensus pattern (40 bp):
TATGGTGTGCAGGGATGGATGGGTCGATTATATCCCCATA
Found at i:122499487 original size:41 final size:41
Alignment explanation
Indices: 122499437--122499523 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
122499427 TTGATTTATG
*
122499437 ACTT-AATGATGTTTTTGCTTCCGCGTTAATGAAATGTTTC
1 ACTTAAATGATGTTTTAGCTTCCGCGTTAATGAAATGTTTC
122499477 ACTTAAATGATGTTTTAGCTTCCGCGTTAATGAAATGTTTC
1 ACTTAAATGATGTTTTAGCTTCCGCGTTAATGAAATGTTTC
122499518 ACTTAA
1 ACTTAA
122499524 TATCCGGATT
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 4 0.09
41 41 0.91
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.43
Consensus pattern (41 bp):
ACTTAAATGATGTTTTAGCTTCCGCGTTAATGAAATGTTTC
Found at i:122504150 original size:37 final size:38
Alignment explanation
Indices: 122504076--122504151 Score: 127
Period size: 37 Copynumber: 2.0 Consensus size: 38
122504066 TTATGCTGAA
*
122504076 AAGAGAGTTGTTCTGAGGACCAAGGAGGATAACGAGAT
1 AAGAGAGTTGTTCTGAGGACCAAGGAGGATAAAGAGAT
*
122504114 AAGAGAGTTGTTCTGAGTA-CAAGGAGGATAAAGAGAT
1 AAGAGAGTTGTTCTGAGGACCAAGGAGGATAAAGAGAT
122504151 A
1 A
122504152 GTTGTGATTG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 18 0.50
38 18 0.50
ACGTcount: A:0.39, C:0.08, G:0.33, T:0.20
Consensus pattern (38 bp):
AAGAGAGTTGTTCTGAGGACCAAGGAGGATAAAGAGAT
Found at i:122508772 original size:40 final size:40
Alignment explanation
Indices: 122508709--122508786 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
122508699 TGTGGTACCT
* *
122508709 TATGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCATA
1 TATGGTGTGCAGGGTAGGATGGGTCGATTATATCCCCATA
*
122508749 TATGGTGTGCAGGGATAGG-TGGGTCGATTTTATCCCCA
1 TATGGTGTGCAGGG-TAGGATGGGTCGATTATATCCCCA
122508787 CATAGTGTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 31 0.91
41 3 0.09
ACGTcount: A:0.19, C:0.14, G:0.33, T:0.33
Consensus pattern (40 bp):
TATGGTGTGCAGGGTAGGATGGGTCGATTATATCCCCATA
Found at i:122509467 original size:39 final size:37
Alignment explanation
Indices: 122509407--122509503 Score: 121
Period size: 34 Copynumber: 2.6 Consensus size: 37
122509397 GAAAACGGTT
*
122509407 TGGGCCTAAGCCCGATT-CAATAACAATCCAGTATCAGTG
1 TGGGCCTTAGCCC-ATTACAATAACAA--CAGTATCAGTG
122509446 TGGGCCTTAGCCCATTACAAT---AACAGTATCAGTG
1 TGGGCCTTAGCCCATTACAATAACAACAGTATCAGTG
*
122509480 TGGGCCTTAGCCCATTACAGTAAC
1 TGGGCCTTAGCCCATTACAATAAC
122509504 CATAACAGAA
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
34 31 0.60
36 2 0.04
38 3 0.06
39 16 0.31
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.25
Consensus pattern (37 bp):
TGGGCCTTAGCCCATTACAATAACAACAGTATCAGTG
Found at i:122509473 original size:34 final size:34
Alignment explanation
Indices: 122509435--122509503 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
122509425 AATAACAATC
122509435 CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
*
122509469 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
122509503 C
1 C
122509504 CATAACAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
Found at i:122512000 original size:25 final size:25
Alignment explanation
Indices: 122511963--122512019 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
122511953 CTTTCTGATT
**
122511963 ATGGCTCTTATGAGCTTCCCGATAC
1 ATGGCTCACATGAGCTTCCCGATAC
* *
122511988 ATGGCTCACATGAGCTTCCCGTTAT
1 ATGGCTCACATGAGCTTCCCGATAC
122512013 ATGGCTC
1 ATGGCTC
122512020 GAGAGAGGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.19, C:0.28, G:0.21, T:0.32
Consensus pattern (25 bp):
ATGGCTCACATGAGCTTCCCGATAC
Found at i:122512802 original size:19 final size:21
Alignment explanation
Indices: 122512778--122512818 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
122512768 AAAGACTTGA
*
122512778 TCTTGG-TTGG-TTTTGAATG
1 TCTTGGATTGGCTTGTGAATG
122512797 TCTTGGATTGGCTTGTGAATG
1 TCTTGGATTGGCTTGTGAATG
122512818 T
1 T
122512819 GTTAAAGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 4 0.21
21 9 0.47
ACGTcount: A:0.12, C:0.07, G:0.32, T:0.49
Consensus pattern (21 bp):
TCTTGGATTGGCTTGTGAATG
Found at i:122513098 original size:52 final size:52
Alignment explanation
Indices: 122513025--122513123 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
122513015 CACAAGGGCG
* *
122513025 TGTGGCTTGGCCGTGTGACCCCTGCACCTACACAC-AGCCTAGCACATCGGCA
1 TGTGGCTTGGCCATGTAACCCCTGCACCTACACACGA-CCTAGCACATCGGCA
*
122513077 TGTGGCTTGGCCATGTAACCCCTGCATCTACACACGACCTAGCACAT
1 TGTGGCTTGGCCATGTAACCCCTGCACCTACACACGACCTAGCACAT
122513124 TGGTGTGTGA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 42 0.98
53 1 0.02
ACGTcount: A:0.21, C:0.35, G:0.22, T:0.21
Consensus pattern (52 bp):
TGTGGCTTGGCCATGTAACCCCTGCACCTACACACGACCTAGCACATCGGCA
Found at i:122521858 original size:21 final size:21
Alignment explanation
Indices: 122521832--122521872 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
122521822 ATCTGCTCAA
* *
122521832 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
122521853 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
122521873 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:122532961 original size:80 final size:80
Alignment explanation
Indices: 122532858--122533014 Score: 260
Period size: 80 Copynumber: 2.0 Consensus size: 80
122532848 TCTCAAGTCC
* * * *
122532858 CCATAAAAACATGATATTCAATCAAAGAAAATAAAGTTTATAAAATTAACACAAATTTTAAAGTT
1 CCATAAAAACATGACATTCAATCAAAGAAAACAAAGTTTATAAAATAAACACAAATATTAAAGTT
122532923 TTACAAGTAAGAGCT
66 TTACAAGTAAGAGCT
* *
122532938 CCATAAAAACATGACATTTAATCAAAGATAACAAAGTTTATAAAATAAACACAAATATTAAAGTT
1 CCATAAAAACATGACATTCAATCAAAGAAAACAAAGTTTATAAAATAAACACAAATATTAAAGTT
122533003 TTACAAGTAAGA
66 TTACAAGTAAGA
122533015 CAATTGGAGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
80 71 1.00
ACGTcount: A:0.53, C:0.11, G:0.08, T:0.27
Consensus pattern (80 bp):
CCATAAAAACATGACATTCAATCAAAGAAAACAAAGTTTATAAAATAAACACAAATATTAAAGTT
TTACAAGTAAGAGCT
Found at i:122544209 original size:23 final size:23
Alignment explanation
Indices: 122544177--122544220 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
122544167 ACTACCATTT
122544177 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAATAATAATAAATA
* *
122544200 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATAATAATAAA
122544221 ATAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:122544213 original size:13 final size:11
Alignment explanation
Indices: 122544181--122544223 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
122544171 CCATTTTCTA
*
122544181 AATAAAATAAT
1 AATAAAATATT
122544192 AAT-AAATATCT
1 AATAAAATAT-T
122544203 AAGTAAAATATT
1 AA-TAAAATATT
122544215 AATAAAATA
1 AATAAAATA
122544224 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:122545776 original size:57 final size:57
Alignment explanation
Indices: 122545703--122545820 Score: 218
Period size: 57 Copynumber: 2.1 Consensus size: 57
122545693 CATTGCAGTA
*
122545703 ACAAACTATGATTTACCTTGCTATGATGCTCGACTGTAATTCTCAAATCCATGGCCG
1 ACAAACTATGATTTACCTTGCTACGATGCTCGACTGTAATTCTCAAATCCATGGCCG
*
122545760 ACAAACTATGATTTACCTTGCTACGATGCTCGACTGTAATTCTCGAATCCATGGCCG
1 ACAAACTATGATTTACCTTGCTACGATGCTCGACTGTAATTCTCAAATCCATGGCCG
122545817 ACAA
1 ACAA
122545821 CTAATGCCAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (57 bp):
ACAAACTATGATTTACCTTGCTACGATGCTCGACTGTAATTCTCAAATCCATGGCCG
Found at i:122546701 original size:37 final size:37
Alignment explanation
Indices: 122546646--122546720 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
122546636 CATGGGAAGA
122546646 AAGTAGCCTCTAATGGGATTATCATTCATAGGTTCAT
1 AAGTAGCCTCTAATGGGATTATCATTCATAGGTTCAT
*
122546683 AAGTGGCCTCTAATGGGATTATCATTCATAGGTTCAT
1 AAGTAGCCTCTAATGGGATTATCATTCATAGGTTCAT
122546720 A
1 A
122546721 TGCCTTGTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (37 bp):
AAGTAGCCTCTAATGGGATTATCATTCATAGGTTCAT
Found at i:122547970 original size:33 final size:33
Alignment explanation
Indices: 122547933--122547999 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
122547923 AACACTTTAA
122547933 GACTCCCTTATACCATTTCGATTTTGTAAACAT
1 GACTCCCTTATACCATTTCGATTTTGTAAACAT
122547966 GACTCCCTTATACCATTTCGATTTTGTAAACAT
1 GACTCCCTTATACCATTTCGATTTTGTAAACAT
122547999 G
1 G
122548000 TTCTCATATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (33 bp):
GACTCCCTTATACCATTTCGATTTTGTAAACAT
Found at i:122548416 original size:20 final size:20
Alignment explanation
Indices: 122548391--122548431 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
122548381 TAAATCATCT
122548391 ACTTGGTTGTGGCTTTAAGG
1 ACTTGGTTGTGGCTTTAAGG
122548411 ACTTGGTTGTGGCTTTAAGG
1 ACTTGGTTGTGGCTTTAAGG
122548431 A
1 A
122548432 TTTTATGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.17, C:0.10, G:0.34, T:0.39
Consensus pattern (20 bp):
ACTTGGTTGTGGCTTTAAGG
Found at i:122551278 original size:14 final size:13
Alignment explanation
Indices: 122551237--122551283 Score: 55
Period size: 14 Copynumber: 3.8 Consensus size: 13
122551227 AAAATTTAAG
*
122551237 ATTTAGTCTTTAT
1 ATTTAGTTTTTAT
122551250 ATTT--TTTTTA-
1 ATTTAGTTTTTAT
122551260 ATTTAGTTTTTAT
1 ATTTAGTTTTTAT
122551273 ATTTTAGTTTT
1 A-TTTAGTTTT
122551284 AAGACGATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
10 4 0.14
11 5 0.17
12 6 0.21
13 5 0.17
14 9 0.31
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.70
Consensus pattern (13 bp):
ATTTAGTTTTTAT
Found at i:122553234 original size:12 final size:12
Alignment explanation
Indices: 122553217--122553264 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
122553207 TGTCATTAAC
122553217 ATATAAAACCAA
1 ATATAAAACCAA
*
122553229 ATATAAAACTTTAA
1 ATATAAAAC--CAA
122553243 CATATAAAACCAA
1 -ATATAAAACCAA
122553256 ATATAAAAC
1 ATATAAAAC
122553265 TTTACTCCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 18 0.58
13 2 0.06
14 2 0.06
15 9 0.29
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (12 bp):
ATATAAAACCAA
Found at i:122553250 original size:27 final size:27
Alignment explanation
Indices: 122553212--122553268 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
122553202 CAGTATGTCA
122553212 TTAACATATAAAACCAAATATAAAACT
1 TTAACATATAAAACCAAATATAAAACT
122553239 TTAACATATAAAACCAAATATAAAACT
1 TTAACATATAAAACCAAATATAAAACT
122553266 TTA
1 TTA
122553269 CTCCCACTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (27 bp):
TTAACATATAAAACCAAATATAAAACT
Found at i:122556951 original size:17 final size:18
Alignment explanation
Indices: 122556929--122556970 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
122556919 AAAATAAACA
122556929 TTTAAATAATTTTT-ATT
1 TTTAAATAATTTTTAATT
*
122556946 TTTAAA-AGTTTTTAAATT
1 TTTAAATAATTTTT-AATT
122556964 TTTAAAT
1 TTTAAAT
122556971 TTTTAAGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 6 0.29
17 6 0.29
18 9 0.43
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TTTAAATAATTTTTAATT
Found at i:122556967 original size:8 final size:8
Alignment explanation
Indices: 122556943--122556976 Score: 50
Period size: 8 Copynumber: 4.0 Consensus size: 8
122556933 AATAATTTTT
122556943 ATTTTTAAA
1 ATTTTT-AA
122556952 AGTTTTTAA
1 A-TTTTTAA
122556961 ATTTTTAA
1 ATTTTTAA
122556969 ATTTTTAA
1 ATTTTTAA
122556977 GATACTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 15 0.62
9 4 0.17
10 5 0.21
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (8 bp):
ATTTTTAA
Found at i:122559874 original size:2 final size:2
Alignment explanation
Indices: 122559863--122559901 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
122559853 CATTCATCTA
122559863 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122559902 TTGTTTATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:122565189 original size:29 final size:29
Alignment explanation
Indices: 122565157--122565216 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
122565147 TTAATTCTAA
*
122565157 AAAGGGGAAAATAAA-GAAATTAAAAAGAT
1 AAAGGGG-AAATAAACAAAATTAAAAAGAT
*
122565186 AAAGGTGAAATAAACAAAATTAAAAAGAT
1 AAAGGGGAAATAAACAAAATTAAAAAGAT
122565215 AA
1 AA
122565217 TATGGCTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 7 0.25
29 21 0.75
ACGTcount: A:0.67, C:0.02, G:0.17, T:0.15
Consensus pattern (29 bp):
AAAGGGGAAATAAACAAAATTAAAAAGAT
Found at i:122565437 original size:19 final size:19
Alignment explanation
Indices: 122565413--122565450 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
122565403 TGATTTTAGA
122565413 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
122565432 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
122565451 TGTTTAGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTGG
Found at i:122567892 original size:2 final size:2
Alignment explanation
Indices: 122567885--122567934 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
122567875 CTTACTCTTC
122567885 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122567927 AT -T AT AT A
1 AT AT AT AT A
122567935 AAGAAATTAG
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122568077 original size:27 final size:27
Alignment explanation
Indices: 122568039--122568093 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
122568029 ATATTAACAG
122568039 CACAACCTTAAATTCTAACAGTTTAGT
1 CACAACCTTAAATTCTAACAGTTTAGT
*
122568066 CACAGCCTTAAATTCTAACAGTTTAGT
1 CACAACCTTAAATTCTAACAGTTTAGT
122568093 C
1 C
122568094 GGTATCAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.33
Consensus pattern (27 bp):
CACAACCTTAAATTCTAACAGTTTAGT
Found at i:122569826 original size:22 final size:22
Alignment explanation
Indices: 122569789--122569833 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
122569779 ACAGAAAAAT
122569789 ATTAACAATATTTTAAAAGTTTA
1 ATTAACAATATTTTAAAA-TTTA
*
122569812 ATTAA-AATGTTTTAAAATTTA
1 ATTAACAATATTTTAAAATTTA
122569833 A
1 A
122569834 ATCATAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 11 0.52
23 5 0.24
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.44
Consensus pattern (22 bp):
ATTAACAATATTTTAAAATTTA
Found at i:122572097 original size:14 final size:14
Alignment explanation
Indices: 122572078--122572123 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
122572068 TAACTTTTTA
*
122572078 AAAAATTATTTTAT
1 AAAAATTATATTAT
* *
122572092 ATAAATTTAGATTAT
1 A-AAAATTATATTAT
122572107 AAAAATTATATTAT
1 AAAAATTATATTAT
122572121 AAA
1 AAA
122572124 CATAAACATA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (14 bp):
AAAAATTATATTAT
Found at i:122573594 original size:35 final size:36
Alignment explanation
Indices: 122573550--122573716 Score: 187
Period size: 35 Copynumber: 4.6 Consensus size: 36
122573540 TCCTCATTGA
** *
122573550 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* **
122573585 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGG----GAT
*
122573625 AATACCATACCTACATTTCACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
122573660 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* * *
122573695 GATACCATACCTATATTCCACA
1 AATACCATACCTACATTTCACA
122573717 CTTTGCCATG
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
35 85 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (36 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAT
Found at i:122573633 original size:75 final size:74
Alignment explanation
Indices: 122573546--122573694 Score: 210
Period size: 75 Copynumber: 2.0 Consensus size: 74
122573536 GTTTTCCTCA
** * * **
122573546 TTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAACT
1 TTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAACT
122573610 CAGTATGGAT
65 CAGTATGGAT
*
122573620 TTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAACT
1 TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
122573685 CAGTATGGAT
65 CAGTATGGAT
122573695 GATACCATAC
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
74 7 0.11
75 59 0.89
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (74 bp):
TTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACTC
AGTATGGAT
Found at i:122576330 original size:89 final size:91
Alignment explanation
Indices: 122576124--122576342 Score: 248
Period size: 93 Copynumber: 2.4 Consensus size: 91
122576114 TAAATGGGAT
* * * * * * *
122576124 TTTTTTATACATTTTGACAATTCAAGTACTCAATTAAGTGCAAAAAAATGCAGTGAATTAATTGT
1 TTTTTGATGCATTTTGA-AATTCAAGTACCCAATTGAGTGCAAAAAAAAGCAGGGAATTAACTG-
*
122576189 TTTTTTTTGTCGAAAAAATTAGAGGGTC
64 TCTTTTTTGTCGAAAAAATTAGAGGGTC
* *
122576217 TTTTTGATGTATTTTGAAATTTCAAGTACCCAATTGAGTGCAAAAAAAAGTAGGGACA-TAACTG
1 TTTTTGATGCATTTTGAAA-TTCAAGTACCCAATTGAGTGCAAAAAAAAGCAGGGA-ATTAACTG
* *
122576281 -CTTTTTT-T-GAAAATATTTGAGGGTC
64 TCTTTTTTGTCGAAAAAATTAGAGGGTC
*
122576306 TTTTTGATGCATTTTGAAAGTTCAAGTATCCAATTGA
1 TTTTTGATGCATTTTGAAA-TTCAAGTACCCAATTGA
122576343 ACATAAAAAA
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
89 49 0.45
90 1 0.01
91 6 0.06
92 2 0.02
93 50 0.46
94 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (91 bp):
TTTTTGATGCATTTTGAAATTCAAGTACCCAATTGAGTGCAAAAAAAAGCAGGGAATTAACTGTC
TTTTTTGTCGAAAAAATTAGAGGGTC
Found at i:122576351 original size:89 final size:85
Alignment explanation
Indices: 122576202--122576395 Score: 228
Period size: 89 Copynumber: 2.2 Consensus size: 85
122576192 TTTTTGTCGA
* * * ***
122576202 AAAAATTAGAGGGTCTTTTTGATGTATTTTGAAATTTCAAGTACCCAATTGAGTGCAAAAAAAAG
1 AAAAATTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAACACAAAAAAAAG
122576267 TAGGGACATAACTGCTTTTTTTG
66 --GGG-CATAACTGCTTTTTTTG
* *
122576290 AAAATATTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTATCCAATTGAACATAAAAAAAA
1 AAAA-ATTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAACACAAAAAAAA
* * *
122576355 GGGGCTTAATTGCATTTTTTG
65 GGGGCATAACTGCTTTTTTTG
*
122576376 AAAAAGTTTGAAGG-CTTTTT
1 AAAAA-TTTGAGGGTCTTTTT
122576396 ACACCCTTAA
Statistics
Matches: 92, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
85 7 0.08
86 25 0.27
87 3 0.03
88 4 0.04
89 53 0.58
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (85 bp):
AAAAATTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAACACAAAAAAAAG
GGGCATAACTGCTTTTTTTG
Found at i:122576441 original size:22 final size:23
Alignment explanation
Indices: 122576415--122576472 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
122576405 AGCCTATATA
122576415 TTATAAAAAATAATAT-ATTTAT
1 TTATAAAAAATAATATAATTTAT
* **
122576437 TTATAAAAAGTGTTATAATTTAT
1 TTATAAAAAATAATATAATTTAT
*
122576460 TTATAAGAAATAA
1 TTATAAAAAATAA
122576473 AGTTTCTAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
22 13 0.46
23 15 0.54
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (23 bp):
TTATAAAAAATAATATAATTTAT
Found at i:122584443 original size:13 final size:13
Alignment explanation
Indices: 122584421--122584453 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
122584411 AAGGGTTTGT
122584421 TTAT-TAAACTAA
1 TTATCTAAACTAA
122584433 TTATCTAAACTAA
1 TTATCTAAACTAA
*
122584446 TTAACTAA
1 TTATCTAA
122584454 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:122593846 original size:15 final size:15
Alignment explanation
Indices: 122593828--122593860 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
122593818 TCGTGGTGAT
122593828 ATTGTTGTGAGCAAA
1 ATTGTTGTGAGCAAA
122593843 ATTGTTGTGAGCAAA
1 ATTGTTGTGAGCAAA
122593858 ATT
1 ATT
122593861 AGTACTCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (15 bp):
ATTGTTGTGAGCAAA
Found at i:122596290 original size:16 final size:17
Alignment explanation
Indices: 122596259--122596293 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
122596249 TTGAAACAGC
122596259 TTAAATAAATAATTAAA
1 TTAAATAAATAATTAAA
*
122596276 TTAATTAAA-AATTAAA
1 TTAAATAAATAATTAAA
122596292 TT
1 TT
122596294 GGACATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TTAAATAAATAATTAAA
Found at i:122599206 original size:18 final size:20
Alignment explanation
Indices: 122599168--122599206 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
122599158 AAAAATGTAT
122599168 TTTTAATATTATTTGATAAA
1 TTTTAATATTATTTGATAAA
*
122599188 TTTTAA-ATT-TTTTATAAA
1 TTTTAATATTATTTGATAAA
122599206 T
1 T
122599207 AATTCTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 3 0.17
20 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (20 bp):
TTTTAATATTATTTGATAAA
Found at i:122614104 original size:77 final size:78
Alignment explanation
Indices: 122613976--122614130 Score: 233
Period size: 77 Copynumber: 2.0 Consensus size: 78
122613966 TTCCTCAACC
* *
122613976 CTACCCTTTTAGTTAATATCATTGTACATTTCTACTTAACTCTAATTTCAACCAAAACT-GACTC
1 CTACCCTTTTAGTTAATATCATGGTACATTTCTACTTAACTCTAATTTCAA-CAAAACTGGACAC
122614040 AATCCTTGTTGGAA
65 AATCCTTGTTGGAA
* * * *
122614054 CTACCC-TTTAGTTAATATCATGGTACATTTGTACTTGACTCTAATTTCAACTAAATTGGACACA
1 CTACCCTTTTAGTTAATATCATGGTACATTTCTACTTAACTCTAATTTCAACAAAACTGGACACA
122614118 ATCCTTGTTGGAA
66 ATCCTTGTTGGAA
122614131 TTAGGGAATG
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
76 5 0.07
77 59 0.84
78 6 0.09
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.38
Consensus pattern (78 bp):
CTACCCTTTTAGTTAATATCATGGTACATTTCTACTTAACTCTAATTTCAACAAAACTGGACACA
ATCCTTGTTGGAA
Found at i:122621163 original size:21 final size:21
Alignment explanation
Indices: 122621120--122621177 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
122621110 CGAATATGCC
* *
122621120 AACAGAAGCTC--AAAAGCTG
1 AACAGAAGCTCGTAAGAGTTG
*
122621139 AACAGAAGCTTGTAAGAGTTG
1 AACAGAAGCTCGTAAGAGTTG
122621160 AACAGAAGCTCGTAAGAG
1 AACAGAAGCTCGTAAGAG
122621178 CTGATTCACC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.30
21 23 0.70
ACGTcount: A:0.43, C:0.16, G:0.26, T:0.16
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGTTG
Found at i:122622058 original size:33 final size:33
Alignment explanation
Indices: 122622021--122622086 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
122622011 AGCAAAAGTA
122622021 TGAAAAACCAGTTTAAAGACCTGTCTCCTTTGT
1 TGAAAAACCAGTTTAAAGACCTGTCTCCTTTGT
122622054 TGAAAAACCAGTTTAAAGACCTGTCTCCTTTGT
1 TGAAAAACCAGTTTAAAGACCTGTCTCCTTTGT
122622087 CAGTTTAAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.33
Consensus pattern (33 bp):
TGAAAAACCAGTTTAAAGACCTGTCTCCTTTGT
Found at i:122625286 original size:2 final size:2
Alignment explanation
Indices: 122625279--122625306 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
122625269 TATTAGTTAA
122625279 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122625307 TTAGTGTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122635562 original size:17 final size:17
Alignment explanation
Indices: 122635529--122635567 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
122635519 CAATTTACTC
122635529 ATTTTATTAATATTAAT
1 ATTTTATTAATATTAAT
*
122635546 ATTTGTATTTATA-TAAT
1 ATTT-TATTAATATTAAT
122635563 ATTTT
1 ATTTT
122635568 TCATATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 12 0.60
18 7 0.35
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
ATTTTATTAATATTAAT
Found at i:122640610 original size:6 final size:6
Alignment explanation
Indices: 122640557--122640609 Score: 97
Period size: 6 Copynumber: 8.8 Consensus size: 6
122640547 TAACCCTTCC
*
122640557 CTCGGT CTCGGT CTCGGT CTCGGT CTCGGT CTCGGT CTCGGT CTCGGA
1 CTCGGT CTCGGT CTCGGT CTCGGT CTCGGT CTCGGT CTCGGT CTCGGT
122640605 CTCGG
1 CTCGG
122640610 AAACCACCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.02, C:0.34, G:0.34, T:0.30
Consensus pattern (6 bp):
CTCGGT
Found at i:122648941 original size:19 final size:19
Alignment explanation
Indices: 122648908--122648946 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
122648898 TTGAAAACAA
*
122648908 AATAACATGATTTTT-TTT
1 AATAACATAATTTTTATTT
122648926 AATAATCATAATTTTTATTT
1 AATAA-CATAATTTTTATTT
122648946 A
1 A
122648947 TTCAGCAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 9 0.50
20 4 0.22
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (19 bp):
AATAACATAATTTTTATTT
Found at i:122650876 original size:15 final size:15
Alignment explanation
Indices: 122650815--122650876 Score: 54
Period size: 15 Copynumber: 3.9 Consensus size: 15
122650805 ATTCAGCAGC
*
122650815 AAGGAGAAGAAAATAA
1 AAGGAGAAGAAAA-AG
*
122650831 AAGGA-AAGAAAGGAG
1 AAGGAGAAGAAA-AAG
*
122650846 AAGAGAAGAAGCAAAAG
1 AAG-G-AGAAGAAAAAG
122650863 AAGGAGAAGAAAAA
1 AAGGAGAAGAAAAA
122650877 AAGAAGGTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
15 19 0.51
16 7 0.19
17 6 0.16
18 5 0.14
ACGTcount: A:0.66, C:0.02, G:0.31, T:0.02
Consensus pattern (15 bp):
AAGGAGAAGAAAAAG
Found at i:122655232 original size:33 final size:33
Alignment explanation
Indices: 122655175--122655243 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
122655165 GAGTACTGCA
*
122655175 GTGGATACGGGCCGGGGGCAGTGCTATAATGCG
1 GTGGATACGGGCCGGGAGCAGTGCTATAATGCG
* **
122655208 GTGGATATGGGCCGGGAG-AGGTGCTATGCTGCG
1 GTGGATACGGGCCGGGAGCA-GTGCTATAATGCG
122655241 GTG
1 GTG
122655244 TGTACGACCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.16, C:0.16, G:0.48, T:0.20
Consensus pattern (33 bp):
GTGGATACGGGCCGGGAGCAGTGCTATAATGCG
Found at i:122655424 original size:71 final size:72
Alignment explanation
Indices: 122655291--122655430 Score: 210
Period size: 71 Copynumber: 2.0 Consensus size: 72
122655281 GCCCCTTGAT
* *
122655291 GAGCCCGAGAAATTGTCATTGCCCGCAAAATCTAGATGATAAGAAGTATCAGCCGAAAGTGAATG
1 GAGCCCGAGAAATAGTCATTGCCCGCAAAATCCAGATGATAAGAAGTATCAGCCGAAAGTGAATG
122655356 CGATGAC
66 CGATGAC
* * * * *
122655363 GAGCCC-AGAAATAGTCATTGCCTGCCAAATCCGGATGATAAGAAGTATCAGTCGAATGTGAATG
1 GAGCCCGAGAAATAGTCATTGCCCGCAAAATCCAGATGATAAGAAGTATCAGCCGAAAGTGAATG
122655427 CGAT
66 CGAT
122655431 CGCTCGGACT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
71 55 0.90
72 6 0.10
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (72 bp):
GAGCCCGAGAAATAGTCATTGCCCGCAAAATCCAGATGATAAGAAGTATCAGCCGAAAGTGAATG
CGATGAC
Found at i:122657488 original size:22 final size:21
Alignment explanation
Indices: 122657460--122657501 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
122657450 TAGTACATAA
122657460 TGTTTTAAATATATTATTTAAG
1 TGTTTTAAATAT-TTATTTAAG
*
122657482 TGTTTTAAATATTTTTTTAA
1 TGTTTTAAATATTTATTTAA
122657502 TAAATAACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
TGTTTTAAATATTTATTTAAG
Found at i:122657552 original size:15 final size:14
Alignment explanation
Indices: 122657532--122657595 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 14
122657522 ACTTTATTCA
122657532 TATTTTTTCGTATAT
1 TATTTTTTC-TATAT
*
122657547 TATTTTTTAAAATATAT
1 TATTTTTT---CTATAT
* *
122657564 TA-TTTTCCTATTT
1 TATTTTTTCTATAT
122657577 TATTTTTT-TATAT
1 TATTTTTTCTATAT
122657590 TATTTT
1 TATTTT
122657596 AGCAAAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
13 16 0.41
14 4 0.10
15 8 0.21
16 4 0.10
17 7 0.18
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.69
Consensus pattern (14 bp):
TATTTTTTCTATAT
Found at i:122657593 original size:145 final size:146
Alignment explanation
Indices: 122657275--122658335 Score: 955
Period size: 145 Copynumber: 7.2 Consensus size: 146
122657265 ATAAGTAAAA
* * *
122657275 TATTTTCGTATATTA-TTTTTTATATTATTTTAGCA-AAAATGTTTTAAATGTATTATGTAAGTA
1 TATTTTCGTATTTTATTTTTTTATATTATTTTAGCACAAAATGTTTCAAATGTATTATTTAAGT-
* ** * *
122657338 TTTTTTTATATTAATTTAATAAATAACACTGATTTTGACACTTT-TTCGTATTTTTTTCGTATCT
65 GTTTTTTATATTTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGTATTTTTTTCGTATAT
122657402 T-TTTTTT--AA-ATAT
130 TATTTTTTAAAATATAT
* * * * * *
122657415 TACTTTCGTA--TTATTTAATTTTAAAACCCTTATTTTAGTACATAATGTTTTAAATATATTATT
1 TATTTTCGTATTTTATTT--TTTT-ATA---TTATTTTAGCACAAAATGTTTCAAATGTATTATT
** *
122657478 TAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTT-AGCACTTTATTCATA-TTTTTTC
60 TAAGTGTTTTTTATATTTTTTTAATAAATAACCCTGATTTTGA-CACTTTATTCGTATTTTTTTC
122657541 GTATATTATTTTTTAAAATATAT
124 GTATATTATTTTTTAAAATATAT
* *
122657564 TATTTTCCTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTATATT
1 TATTTTCGTATTTTATTTTTTTATATTATTTTAGCACAAAATGTTTCAAATG---TA--T-TA-T
* ** *
122657629 ATGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTTTT
59 -T-TAAGTG-TTTTTTATATTTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGTATTTTT
*
122657694 TT--TATCTTATTTTTTAAAATATAT
121 TTCGTATATTATTTTTTAAAATATAT
* * * * * *
122657718 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTCAGTA
1 TATTTTCGTATTTTATTTTTTTATATTATTTTAGCACAAAATGTTTCAAATGTATTATTTAAGTG
* *
122657783 TTTTTTATATTTTTTCAATAAATATCCCTGATTTT-AGCACTTTATTCGTATTTTTTTCGTATAT
66 TTTTTTATATTTTTTTAATAAATAACCCTGATTTTGA-CACTTTATTCGTATTTTTTTCGTATAT
122657847 TATTTTTTAAAATATAT
130 TATTTTTTAAAATATAT
* * *** * *
122657864 TATTTTCTTATTTTA-TTTTTTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAATTAACTG
1 TATTTTCGTATTTTATTTTTTTATATTATTTTAGCACAAAATGTTTCAAATGTATTATTTAAGTG
* * *
122657928 TTTCTTTATATTAAGGGTTTTTTACTAAATAACCCTGATTTTGATACTTTCTTCGTAATTTTTTT
66 TTT-TTTATA-T-----TTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGT-A---TTTT
*
122657993 ATTTCCGTATATTATTTTTAAAAATAT-T
120 -TTT-CGTATATTATTTTTTAAAATATAT
* * * *
122658021 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGCTTCAAATGTATTATTTAAG-G
1 TATTTTCGTATTTTATTTTTTTATATTATTTTAGCACAAAATGTTTCAAATGTATTATTTAAGTG
* *
122658085 ATTATTTATATTTTTTTAATAAATAACCCTAATTTT-AGCACTTTATTCGTATTTTTTTCGTATA
66 -TTTTTTATATTTTTTTAATAAATAACCCTGATTTTGA-CACTTTATTCGTATTTTTTTCGTATA
122658149 TTATTTTTTAAAATATAT
129 TTATTTTTTAAAATATAT
* * *
122658167 TATTTT-G----GTA------T-T-TTATTTTAGCATAAAATCTTTCAAATGTATTATTTAAGT-
1 TATTTTCGTATTTTATTTTTTTATATTATTTTAGCACAAAATGTTTCAAATGTATTATTTAAGTG
** * * * * * *
122658218 TTTTTTATATTAATTTAATAAGTAA-CCTGACTTTGGCACCTTGTTCGTATTTTTTTATTTTCGG
66 TTTTTTATATTTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGTA----TTT-TTTTCGT
* * * *
122658282 ATTTTATTTTTTTAATTATAC
126 ATATTATTTTTTAAAATATAT
*
122658303 TATTTTCATATTTTATTTTTTTATATTATTTTA
1 TATTTTCGTATTTTATTTTTTTATATTATTTTA
122658336 ACAAAAAACT
Statistics
Matches: 750, Mismatches: 102, Indels: 129
0.76 0.10 0.13
Matches are distributed among these distances:
131 18 0.02
132 21 0.03
133 33 0.04
134 1 0.00
135 4 0.01
136 29 0.04
138 3 0.00
139 2 0.00
140 9 0.01
141 8 0.01
142 2 0.00
143 1 0.00
144 50 0.07
145 147 0.20
146 87 0.12
147 7 0.01
148 9 0.01
149 25 0.03
150 3 0.00
151 43 0.06
152 33 0.04
153 3 0.00
154 73 0.10
155 41 0.05
156 12 0.02
157 25 0.03
158 61 0.08
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.56
Consensus pattern (146 bp):
TATTTTCGTATTTTATTTTTTTATATTATTTTAGCACAAAATGTTTCAAATGTATTATTTAAGTG
TTTTTTATATTTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGTATTTTTTTCGTATATT
ATTTTTTAAAATATAT
Found at i:122657846 original size:300 final size:295
Alignment explanation
Indices: 122657275--122658185 Score: 1149
Period size: 303 Copynumber: 3.1 Consensus size: 295
122657265 ATAAGTAAAA
* *
122657275 TATTTTCGTATATTATTTTTTATATTATTTTAGC-AAAAATGTTTTAAATGTATTATG-TAA-GT
1 TATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTTAATGT
* *
122657337 -A--TTTTTTTATATTAATTTAATAAATAACACTGATTTTGACAC-TTTTTCGTATTTTTTTCGT
66 AATGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTTTTTT-AT
* * *
122657398 ATCTT-TTTTTT--AAATATTACTTTCGTATTATTTAATT-TTAAAACCCTTATTTTAGTACATA
130 ATCTTATTTTTTAAAAATATTATTTTCGTA-T-TTTATTTCTTAATA---TTATTTTAGTACATA
* * * **
122657459 ATGTTTTAAATATATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCAC
190 ATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCAC
*
122657524 TTTATTCATA-TTTTTTCGTATATTATTTTTTAAAATATAT
255 TTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATAT
*
122657564 TATTTTCCTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTATATT
1 TATTTTCGTATTTTA-TTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGT-TA--
*
122657629 ATGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTTTT
62 ATGTAA-TGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTTTT
*
122657694 TT-TATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATA
126 TTATATCTTATTTTTTAAAA-ATATTATTTTCGTATTTTATTTCTTAATATTATTTTAGTACATA
* * *
122657758 ATGTTTCAAATGTATTATTTCAGTATTTTTTATATTTTTTCAATAAATATCCCTGATTTTAGCAC
190 ATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCAC
122657823 TTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATAT
255 TTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATAT
* ***
122657864 TATTTTCTTATTTTATTTTTTATATTATTTTAGCAAAAAAAAATTCAAATG---TA--TTAAT-T
1 TATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTTAATGT
* * * *
122657923 AACTGTTTCTTTATATTAAGGGTTTTTTACTAAATAACCCTGATTTTGATACTTTCTTCGTAATT
66 AA-TGTTTTTTTATATTAA------TTTAATAAATAACCCTGATTTTGACACTTTTTTCGT-ATT
* *
122657988 TTTTTATTTCCGTATATTATTTTTAAAAATATTTATTTTCGTATTTTATTTCTTTATATTATTTT
123 TTTTTATAT-C-T-TA-T-TTTTTAAAAATA-TTATTTTCGTATTTTATTTCTTAATATTATTTT
* * * *
122658053 AGTACATAATGCTTCAAATGTATTATTTAAGGATTATTTATATTTTTTTAATAAATAACCCTAAT
182 AGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGAT
122658118 TTTAGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATAT
247 TTTAGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATAT
*
122658167 TATTTTGGTATTTTATTTT
1 TATTTTCGTATTTTATTTT
122658186 AGCATAAAAT
Statistics
Matches: 551, Mismatches: 39, Indels: 50
0.86 0.06 0.08
Matches are distributed among these distances:
289 13 0.02
290 36 0.07
291 24 0.04
293 4 0.01
294 1 0.00
295 1 0.00
296 37 0.07
297 9 0.02
298 2 0.00
299 121 0.22
300 90 0.16
301 24 0.04
302 11 0.02
303 178 0.32
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (295 bp):
TATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTTAATGT
AATGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTTTTTTATA
TCTTATTTTTTAAAAATATTATTTTCGTATTTTATTTCTTAATATTATTTTAGTACATAATGTTT
CAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATT
CGTATTTTTTTCGTATATTATTTTTTAAAATATAT
Found at i:122657891 original size:12 final size:13
Alignment explanation
Indices: 122657859--122657894 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
122657849 TTTTTTAAAA
122657859 TATATTATTTTCT
1 TATATTATTTTCT
*
122657872 TATTTTATTTT-T
1 TATATTATTTTCT
122657884 TATATTATTTT
1 TATATTATTTT
122657895 AGCAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (13 bp):
TATATTATTTTCT
Found at i:122658309 original size:30 final size:31
Alignment explanation
Indices: 122658273--122658331 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
122658263 CGTATTTTTT
*
122658273 TATTTTCGGATTTTATTTTTTTA-ATTATAC
1 TATTTTCAGATTTTATTTTTTTATATTATAC
*
122658303 TATTTTCATATTTTATTTTTTTATATTAT
1 TATTTTCAGATTTTATTTTTTTATATTAT
122658332 TTTAACAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (31 bp):
TATTTTCAGATTTTATTTTTTTATATTATAC
Found at i:122658789 original size:14 final size:14
Alignment explanation
Indices: 122658770--122658831 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
122658760 AAAAATTACA
122658770 TTTTTCTTTCCTTC
1 TTTTTCTTTCCTTC
* *
122658784 TTTTTCCTTCCCTC
1 TTTTTCTTTCCTTC
*
122658798 TTCTTCTTCTCCTTC
1 TTTTTCTT-TCCTTC
122658813 TCTTTTCCTTT--TTC
1 T-TTTT-CTTTCCTTC
122658827 TTTTT
1 TTTTT
122658832 TCTTCTCTCA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
13 4 0.10
14 22 0.56
15 6 0.15
16 4 0.10
17 3 0.08
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTTCTTTCCTTC
Found at i:122658886 original size:3 final size:3
Alignment explanation
Indices: 122658867--122658926 Score: 61
Period size: 3 Copynumber: 20.0 Consensus size: 3
122658857 TCCTCCTCTC
* *
122658867 CTT CTT TTT CTTT CTT CTT CTT C-T CTT CTT C-C CTT CTT CTCT CTT
1 CTT CTT CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT-T CTT
*
122658912 TTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT
122658927 TGCCGAAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
2 3 0.06
3 38 0.81
4 6 0.13
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:122658888 original size:16 final size:16
Alignment explanation
Indices: 122658867--122658923 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
122658857 TCCTCCTCTC
122658867 CTTCTTTTTCTTTCTT
1 CTTCTTTTTCTTTCTT
*
122658883 CTTCTTCTCTTCTTCCCTT
1 CTTCTT-T-TTCTT-TCTT
*
122658902 CTTCTCTCTT-TTTCTT
1 CTTCT-TTTTCTTTCTT
122658918 CTTCTT
1 CTTCTT
122658924 CTTTGCCGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
15 1 0.03
16 14 0.41
17 3 0.09
18 7 0.21
19 8 0.24
20 1 0.03
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (16 bp):
CTTCTTTTTCTTTCTT
Found at i:122658895 original size:8 final size:8
Alignment explanation
Indices: 122658882--122658926 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
122658872 TTTTCTTTCT
122658882 TCTTCTTC
1 TCTTCTTC
122658890 TCTTCTTC
1 TCTTCTTC
*
122658898 CCTTCTTC
1 TCTTCTTC
122658906 TC-TCTT-
1 TCTTCTTC
122658912 T-TTCTTC
1 TCTTCTTC
122658919 TTCTTCTT
1 -TCTTCTT
122658927 TGCCGAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
6 5 0.16
7 4 0.13
8 17 0.55
9 5 0.16
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (8 bp):
TCTTCTTC
Found at i:122658895 original size:38 final size:38
Alignment explanation
Indices: 122658853--122658926 Score: 98
Period size: 38 Copynumber: 1.9 Consensus size: 38
122658843 CCGAGGCCTC
122658853 CTTC-TCCTCCTCTCCT-TCTTTTTCTTTCTTCTTCTTCT
1 CTTCTTCC-CCTCTCCTCTCTTTTTC-TTCTTCTTCTTCT
* *
122658891 CTTCTTCCCTTCTTCTCTCTTTTTCTTCTTCTTCTT
1 CTTCTTCCCCTCTCCTCTCTTTTTCTTCTTCTTCTT
122658927 TGCCGAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
38 21 0.66
39 11 0.34
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (38 bp):
CTTCTTCCCCTCTCCTCTCTTTTTCTTCTTCTTCTTCT
Found at i:122659983 original size:10 final size:9
Alignment explanation
Indices: 122659963--122659992 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
122659953 ACATTTAATT
122659963 AAATTTTAA
1 AAATTTTAA
122659972 AAATTTTAA
1 AAATTTTAA
122659981 AAATATTTAA
1 AAAT-TTTAA
122659991 AA
1 AA
122659993 GTTATAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 13 0.65
10 7 0.35
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AAATTTTAA
Found at i:122660020 original size:19 final size:19
Alignment explanation
Indices: 122659996--122660035 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
122659986 TTTAAAAGTT
* *
122659996 ATAATTTTTATACTTTTTA
1 ATAATTTTAATAATTTTTA
122660015 ATAATTTTAATAATTTTTA
1 ATAATTTTAATAATTTTTA
122660034 AT
1 AT
122660036 TTTTAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (19 bp):
ATAATTTTAATAATTTTTA
Found at i:122660061 original size:7 final size:8
Alignment explanation
Indices: 122659998--122660083 Score: 59
Period size: 9 Copynumber: 10.2 Consensus size: 8
122659988 TAAAAGTTAT
122659998 AATTTTTA
1 AATTTTTA
*
122660006 TACTTTTTAA
1 -AATTTTT-A
*
122660016 TAATTTTAA
1 -AATTTTTA
122660025 TAATTTTT-
1 -AATTTTTA
122660033 AATTTTTA
1 AATTTTTA
***
122660041 AA-AAATA
1 AATTTTTA
122660048 AATTTTTA
1 AATTTTTA
122660056 AATTTTTTAA
1 AA-TTTTT-A
122660066 AATTTTTA
1 AATTTTTA
122660074 AATTTTTA
1 AATTTTTA
122660082 AA
1 AA
122660084 AAGTAACTAA
Statistics
Matches: 62, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
7 11 0.18
8 17 0.27
9 24 0.39
10 10 0.16
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (8 bp):
AATTTTTA
Found at i:122660070 original size:18 final size:17
Alignment explanation
Indices: 122659961--122660083 Score: 76
Period size: 18 Copynumber: 7.3 Consensus size: 17
122659951 AAACATTTAA
*
122659961 TTAAATTTTAAAAATTT
1 TTAAATTTTTAAAATTT
* * *
122659978 TAAAAATATTTAAAAGTT
1 T-TAAATTTTTAAAATTT
* * *
122659996 AT-AATTTTTATACTTT
1 TTAAATTTTTAAAATTT
*
122660012 TTAATAATTTTAATAATTT
1 TTAA-ATTTTTAA-AATTT
*
122660031 TT-AATTTTTAAAA--A
1 TTAAATTTTTAAAATTT
* *
122660045 ATAAATTTTTAAATTTT
1 TTAAATTTTTAAAATTT
122660062 TTAAAATTTTT-AAATTT
1 TT-AAATTTTTAAAATTT
122660079 TTAAA
1 TTAAA
122660084 AAGTAACTAA
Statistics
Matches: 77, Mismatches: 21, Indels: 17
0.67 0.18 0.15
Matches are distributed among these distances:
14 1 0.01
15 10 0.13
16 16 0.21
17 17 0.22
18 27 0.35
19 6 0.08
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.54
Consensus pattern (17 bp):
TTAAATTTTTAAAATTT
Found at i:122660204 original size:15 final size:16
Alignment explanation
Indices: 122660184--122660218 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
122660174 TAAGGTGATT
*
122660184 TAAT-AAAAATTGAAA
1 TAATAAAAAATTAAAA
122660199 TAATAAAAAATTAAAA
1 TAATAAAAAATTAAAA
122660215 TAAT
1 TAAT
122660219 TTTTTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
TAATAAAAAATTAAAA
Found at i:122661071 original size:21 final size:21
Alignment explanation
Indices: 122661045--122661175 Score: 79
Period size: 21 Copynumber: 6.3 Consensus size: 21
122661035 AGGAAATACC
*
122661045 AAAAAATATTAGGGATTATTA
1 AAAAAATATGAGGGATTATTA
** *
122661066 AAAAAATATGAGATAAGTATTA
1 AAAAAATATGAG-GGATTATTA
** *
122661088 AAAAAAGGTGAGGGAGTA-T-
1 AAAAAATATGAGGGATTATTA
* * * **
122661107 AAAAATTATTAGAGATTACCA
1 AAAAAATATGAGGGATTATTA
* *
122661128 AAAAAATACGAGTGATTA-TA
1 AAAAAATATGAGGGATTATTA
* *
122661148 AAAAAATCATGAGGGAATATAA
1 AAAAAAT-ATGAGGGATTATTA
122661170 AAAAAA
1 AAAAAA
122661176 CATTTGGGAA
Statistics
Matches: 81, Mismatches: 24, Indels: 9
0.71 0.21 0.08
Matches are distributed among these distances:
19 12 0.15
20 9 0.11
21 37 0.46
22 23 0.28
ACGTcount: A:0.56, C:0.03, G:0.17, T:0.24
Consensus pattern (21 bp):
AAAAAATATGAGGGATTATTA
Found at i:122661184 original size:21 final size:21
Alignment explanation
Indices: 122661144--122661194 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
122661134 TACGAGTGAT
*
122661144 TATAAAAAAATCATGAGGGAA
1 TATAAAAAAAACATGAGGGAA
**
122661165 TATAAAAAAAACATTTGGGAA
1 TATAAAAAAAACATGAGGGAA
*
122661186 TATCAAAAA
1 TATAAAAAA
122661195 TTCTGAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.59, C:0.06, G:0.14, T:0.22
Consensus pattern (21 bp):
TATAAAAAAAACATGAGGGAA
Done.