Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 424 of 444
Found at i:122661449 original size:21 final size:19
Alignment explanation
Indices: 122661401--122661454 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 19
122661391 AAAATTGAAA
122661401 TTTTTTAA-TTAAAGTATT
1 TTTTTTAATTTAAAGTATT
*
122661419 TTTTTATAATTTAAATTAATT
1 TTTTT-TAATTTAAAGT-ATT
122661440 TTATTTTAATTTAAA
1 TT-TTTTAATTTAAA
122661455 AGTGTTATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
18 5 0.16
19 3 0.10
20 6 0.19
21 14 0.45
22 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTTTAATTTAAAGTATT
Found at i:122663275 original size:12 final size:12
Alignment explanation
Indices: 122663258--122663282 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
122663248 AAAAACAAAA
122663258 ACCTTGTTGATC
1 ACCTTGTTGATC
122663270 ACCTTGTTGATC
1 ACCTTGTTGATC
122663282 A
1 A
122663283 GCCTATCATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (12 bp):
ACCTTGTTGATC
Found at i:122664541 original size:26 final size:26
Alignment explanation
Indices: 122664505--122664614 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
122664495 TGATACAAAT
122664505 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
122664531 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
122664557 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
122664583 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
122664609 TGATAA
1 TGATAA
122664615 GAATTCCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:122672920 original size:12 final size:12
Alignment explanation
Indices: 122672905--122672934 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
122672895 ATTAACACCT
*
122672905 CACTAAATCAAC
1 CACTAAACCAAC
122672917 CACTAAACCAAC
1 CACTAAACCAAC
122672929 CACTAA
1 CACTAA
122672935 CTTTATTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.37, G:0.00, T:0.13
Consensus pattern (12 bp):
CACTAAACCAAC
Found at i:122673085 original size:23 final size:22
Alignment explanation
Indices: 122673058--122673103 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
122673048 AGAAAAAATG
122673058 AGAGAGA-TTCGAATACAAGAAAA
1 AGAGAGACTTC-AATACAA-AAAA
122673081 AGAGAGACTTTCAATACAAAAAA
1 AGAGAGAC-TTCAATACAAAAAA
122673104 TACAAGAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 11 0.52
24 7 0.33
25 3 0.14
ACGTcount: A:0.57, C:0.11, G:0.17, T:0.15
Consensus pattern (22 bp):
AGAGAGACTTCAATACAAAAAA
Found at i:122673085 original size:25 final size:24
Alignment explanation
Indices: 122673050--122673103 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
122673040 TTTTTTGGAG
*
122673050 AAAAAATGAGAGAGATTCGAATACA
1 AAAAAATGAGAGACATTC-AATACA
*
122673075 AGAAAAA-GAGAGACTTTCAATACA
1 A-AAAAATGAGAGACATTCAATACA
122673099 AAAAA
1 AAAAA
122673104 TACAAGAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 4 0.15
24 7 0.27
25 10 0.38
26 5 0.19
ACGTcount: A:0.59, C:0.09, G:0.17, T:0.15
Consensus pattern (24 bp):
AAAAAATGAGAGACATTCAATACA
Found at i:122673395 original size:3 final size:3
Alignment explanation
Indices: 122673377--122673753 Score: 188
Period size: 3 Copynumber: 125.3 Consensus size: 3
122673367 GGGGAGAGTG
* *
122673377 TTA TTT TTA ATA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
122673425 TTA TTA TTA TTA TTA TTA TTA CTT- TTA CTA TTA TT- CTA TATA CTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA T-TA TTA
* * * * * * * * *
122673470 TTA CTG TT- TTCT TTA TTA TTA TTA TTA GTA GTAA CGTA ATA GTA TTT
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA
* * * *
122673517 TTA TTA CTT- TTA CCTTT TTA TTA TTA TT- TTC TT- TTT TTA -TA TTG
1 TTA TTA -TTA TTA --TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** *
122673561 TTA TTA TTA TTA GCA CGTA -TA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
122673606 TTA TTA TTA TTA TCA TTA TTT TCTA TTA TCA TTA ATA TGTA GTT- TGT-
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-TA -TTA T-TA
* ** * * *
122673653 TTA TTA TTA TTA TTA TTT TTA ACA CTA TTA TCA TCA TTA -TA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* * ** *
122673698 CTT- TT- TTT TTA ATA TTA TTA CCA TTA -TA TTA TTA TTA TTA CTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
122673741 TTA TTT TTA TTA T
1 TTA TTA TTA TTA T
122673754 CCGTCCTATT
Statistics
Matches: 287, Mismatches: 62, Indels: 50
0.72 0.16 0.13
Matches are distributed among these distances:
2 25 0.09
3 238 0.83
4 21 0.07
5 3 0.01
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:122674611 original size:22 final size:22
Alignment explanation
Indices: 122674572--122674630 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
122674562 GTTTTAAGAA
*
122674572 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
122674593 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
122674615 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
122674631 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:122674647 original size:26 final size:24
Alignment explanation
Indices: 122674601--122674648 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
122674591 ATTTGTTTTA
*
122674601 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
122674625 ATATTTGATTTATTATATTTTTAA
1 ATATTT-ATTT-TTATATTTTTAA
122674649 TTTTTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 4 0.19
26 11 0.52
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:122678583 original size:1 final size:1
Alignment explanation
Indices: 122678573--122678630 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
122678563 AATGGCCTCC
* * * * * * *
122678573 TTTTTCTTTTTCTTCTTTGTTTTTTTTTTGTTTTTGTTTTTGTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
122678631 GGTATTATAA
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.00, C:0.05, G:0.07, T:0.88
Consensus pattern (1 bp):
T
Found at i:122678583 original size:6 final size:6
Alignment explanation
Indices: 122678573--122678631 Score: 68
Period size: 6 Copynumber: 10.0 Consensus size: 6
122678563 AATGGCCTCC
* *
122678573 TTTTTC TTTTTC TTCTTTG TTTTT- TTTTTG TTTTTG TTTTTG TTTTT-
1 TTTTTG TTTTTG TT-TTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
*
122678620 TTTTTT TTTTTG
1 TTTTTG TTTTTG
122678632 GTATTATAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
5 10 0.21
6 33 0.69
7 5 0.10
ACGTcount: A:0.00, C:0.05, G:0.08, T:0.86
Consensus pattern (6 bp):
TTTTTG
Found at i:122678631 original size:23 final size:24
Alignment explanation
Indices: 122678573--122678631 Score: 84
Period size: 23 Copynumber: 2.5 Consensus size: 24
122678563 AATGGCCTCC
*
122678573 TTTTTCTTTTTCTTCTTTGTTTTT
1 TTTTTCTTTTTGTTCTTTGTTTTT
*
122678597 TTTTTGTTTTTGTT-TTTGTTTTT
1 TTTTTCTTTTTGTTCTTTGTTTTT
*
122678620 TTTTTTTTTTTG
1 TTTTTCTTTTTG
122678632 GTATTATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 20 0.62
24 12 0.38
ACGTcount: A:0.00, C:0.05, G:0.08, T:0.86
Consensus pattern (24 bp):
TTTTTCTTTTTGTTCTTTGTTTTT
Found at i:122683204 original size:15 final size:15
Alignment explanation
Indices: 122683186--122683218 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
122683176 AAATAAATTT
*
122683186 ATTATATTTTATAAA
1 ATTATAATTTATAAA
122683201 ATTATAATTTATAAA
1 ATTATAATTTATAAA
122683216 ATT
1 ATT
122683219 TGCAATCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTATAATTTATAAA
Found at i:122683219 original size:25 final size:24
Alignment explanation
Indices: 122683173--122683219 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
122683163 TATCAATTAT
* *
122683173 TAAAAATAAATTTATTATATTTTA
1 TAAAAATAAATTTATAAAATTTTA
*
122683197 TAAAATTATAATTTATAAAATTT
1 TAAAAATA-AATTTATAAAATTT
122683220 GCAATCAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 7 0.37
25 12 0.63
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
TAAAAATAAATTTATAAAATTTTA
Found at i:122687617 original size:10 final size:10
Alignment explanation
Indices: 122687601--122687639 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
122687591 TATTTCAGCT
122687601 TTTATCTTTA
1 TTTATCTTTA
*
122687611 ATTATCTTTA
1 TTTATCTTTA
*
122687621 TTTATCTGTA
1 TTTATCTTTA
122687631 TTTATCTTT
1 TTTATCTTT
122687640 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.21, C:0.10, G:0.03, T:0.67
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:122688263 original size:17 final size:18
Alignment explanation
Indices: 122688235--122688268 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
122688225 TATTCTCTAT
122688235 TTTAATTTTCACAATTTA
1 TTTAATTTTCACAATTTA
122688253 TTTAA-TTTCACAATTT
1 TTTAATTTTCACAATTT
122688269 CAATCAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAATTTTCACAATTTA
Found at i:122690378 original size:26 final size:24
Alignment explanation
Indices: 122690331--122690378 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
122690321 TGTTAATTAT
* *
122690331 TAAAAATAAATTTATGATATTTTA
1 TAAAAATAAATTTATAAAATTTTA
122690355 TAAAAATTATAATTTATAAAATTT
1 TAAAAA-TA-AATTTATAAAATTT
122690379 GCAACTAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 6 0.30
25 2 0.10
26 12 0.60
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (24 bp):
TAAAAATAAATTTATAAAATTTTA
Found at i:122691668 original size:20 final size:20
Alignment explanation
Indices: 122691645--122691682 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
122691635 AACTTCTAAA
122691645 TTAAACCCATTAAAATCATT
1 TTAAACCCATTAAAATCATT
122691665 TTAAACCCATTAAAATCA
1 TTAAACCCATTAAAATCA
122691683 CATTTAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (20 bp):
TTAAACCCATTAAAATCATT
Found at i:122695010 original size:23 final size:25
Alignment explanation
Indices: 122694984--122695030 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
122694974 TATCATTCAT
*
122694984 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
122695007 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
122695031 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:122695350 original size:46 final size:46
Alignment explanation
Indices: 122695290--122695506 Score: 274
Period size: 46 Copynumber: 4.7 Consensus size: 46
122695280 TTTGACGTGA
* * * * * *
122695290 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * * *
122695336 TGCCATGGTATCTTTCAACCATGGTTTTATTCTTTTCATGTTACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
122695382 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
122695428 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
122695474 TGCCATGGTATCTTTCAACCATAGTCTTACACA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA
122695507 CAGGTTGCCA
Statistics
Matches: 150, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
45 4 0.03
46 146 0.97
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:122695397 original size:92 final size:89
Alignment explanation
Indices: 122695290--122695731 Score: 562
Period size: 92 Copynumber: 5.0 Consensus size: 89
122695280 TTTGACGTGA
* * * * *
122695290 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CA--TTCTATCAGGTTGCCATGGTATCTTTCAAC
* ** * * * *
122695355 CATGGTTTTATTCTTTTCATGTTACGT
63 CATGGTCTTACACATTTCATATCAGGT
122695382 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CAT-TC-TATCAGGTTGCCATGGTATCTTTCAAC
*
122695447 CATGGTCTTACATATTTCATATCAGGT
63 CATGGTCTTACACATTTCATATCAGGT
* *
122695474 TGCCATGGTATCTTTCAACCATAGTCTTA-CA--C-A-CAGGTTGCCATAGTATCTTTCAACCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACCATTCTATCAGGTTGCCATGGTATCTTTCAACCAT
*
122695534 GGTCTTACACATCTCATATCAGGT
66 GGTCTTACACATTTCATATCAGGT
122695558 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CAT-TC-TATCAGGTTGCCATGGTATCTTTCAAC
*
122695623 CATGGTCTTACACATTTCATATTAGGT
63 CATGGTCTTACACATTTCATATCAGGT
* *
122695650 TACCATGGTATCTTTCAACCATGGTCTTA-CA--C-GT-AGGTTGCCATGGTATCTTTCAACCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACCATTCTATCAGGTTGCCATGGTATCTTTCAACCAT
122695710 GGTCTTACACATTTCATATCAG
66 GGTCTTACACATTTCATATCAG
122695732 AGAGCACACT
Statistics
Matches: 315, Mismatches: 25, Indels: 28
0.86 0.07 0.08
Matches are distributed among these distances:
84 123 0.39
85 2 0.01
86 2 0.01
87 2 0.01
89 1 0.00
90 5 0.02
91 3 0.01
92 177 0.56
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (89 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACCATTCTATCAGGTTGCCATGGTATCTTTCAACCAT
GGTCTTACACATTTCATATCAGGT
Found at i:122695559 original size:130 final size:132
Alignment explanation
Indices: 122695290--122695731 Score: 537
Period size: 130 Copynumber: 3.3 Consensus size: 132
122695280 TTTGACGTGA
* * * * * *
122695290 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAA
* * * * *
122695354 CCATGGTTTTATTCTTTTCATGTTACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTC
65 CCATAGTCTTA--C---ACAT-CTAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTC
122695419 ATATCAGGT
124 ATATCAGGT
*
122695428 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
*
122695493 CATAGTCTTACACA-C-AGGTTGCCATAGTATCTTTCAACCATGGTCTTACACATCTCATATCAG
66 CATAGTCTTACACATCTAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAG
122695556 GT
131 GT
*
122695558 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
* *
122695623 CATGGTCTTACACATTTCATATTAGGTTACCATGGTATCTTTCAACCATGGTCTT--ACA---C-
66 CATAGTCTTACACA--TC----TAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCA
*
122695682 -GT-AGGT
125 TATCAGGT
122695688 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
122695732 AGAGCACACT
Statistics
Matches: 275, Mismatches: 20, Indels: 26
0.86 0.06 0.08
Matches are distributed among these distances:
130 171 0.62
131 1 0.00
133 4 0.01
136 4 0.01
137 4 0.01
138 91 0.33
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (132 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATAGTCTTACACATCTAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAG
GT
Found at i:122695574 original size:46 final size:46
Alignment explanation
Indices: 122695507--122695731 Score: 340
Period size: 46 Copynumber: 5.1 Consensus size: 46
122695497 GTCTTACACA
*
122695507 CAGGTTGCCATAGTATCTTTCAACCATGGTCTTACACATCTCATAT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATAT
122695553 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATAT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATAT
*
122695599 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATAT
* * *
122695645 TAGGTTACCATGGTATCTTTCAACCATGGTCTT--ACA---C--GT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATAT
*
122695684 -AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATAT
122695729 CAG
1 CAG
122695732 AGAGCACACT
Statistics
Matches: 164, Mismatches: 7, Indels: 16
0.88 0.04 0.09
Matches are distributed among these distances:
38 31 0.19
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 1 0.01
46 123 0.75
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (46 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATAT
Found at i:122695628 original size:176 final size:176
Alignment explanation
Indices: 122695334--122695731 Score: 661
Period size: 176 Copynumber: 2.3 Consensus size: 176
122695324 TTTCTGTCAT
* ** * * * *
122695334 GTTGCCATGGTATCTTTCAACCATGGTTTTATTCTTTTCATGTTACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
*
122695399 ACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACATATTT
66 ACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
*
122695464 CATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACACAG
131 CATATCAGGTTACCATGGTATCTTTCAACCATAGTCTTACACACAG
* *
122695510 GTTGCCATAGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
122695575 ACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
66 ACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
* * **
122695640 CATATTAGGTTACCATGGTATCTTTCAACCATGGTCTTACACGTAG
131 CATATCAGGTTACCATGGTATCTTTCAACCATAGTCTTACACACAG
122695686 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
122695732 AGAGCACACT
Statistics
Matches: 205, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
176 205 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (176 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
ACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
CATATCAGGTTACCATGGTATCTTTCAACCATAGTCTTACACACAG
Found at i:122697921 original size:27 final size:25
Alignment explanation
Indices: 122697858--122697921 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 25
122697848 TCTTTATATA
*
122697858 CTAATAAAATAATAAAATATTTTAT
1 CTAATTAAATAATAAAATATTTTAT
* *
122697883 -TAAAGT-ATTAATAAAATAATATTTAT
1 CT-AATTAAATAATAAAAT-AT-TTTAT
122697909 CTAATTAAATAAT
1 CTAATTAAATAAT
122697922 TATAAAATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 8
0.69 0.12 0.19
Matches are distributed among these distances:
24 11 0.38
25 4 0.14
26 8 0.28
27 6 0.21
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (25 bp):
CTAATTAAATAATAAAATATTTTAT
Found at i:122699779 original size:20 final size:21
Alignment explanation
Indices: 122699756--122699800 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
122699746 AACTTCTAAA
122699756 TTAAA-CCTATTAAAATCAC-T
1 TTAAATCC-ATTAAAATCACAT
122699776 TTAAATCCATTAAAATCACAT
1 TTAAATCCATTAAAATCACAT
122699797 TTAA
1 TTAA
122699801 CGTTTAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.36
Consensus pattern (21 bp):
TTAAATCCATTAAAATCACAT
Found at i:122705656 original size:26 final size:26
Alignment explanation
Indices: 122705586--122705668 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
122705576 CATGAAATTC
122705586 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
122705612 TTATC-TGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
122705637 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
122705663 TTATCA
1 TTATCA
122705669 ATTTGTATTA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
25 25 0.46
26 29 0.54
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:122708269 original size:2 final size:2
Alignment explanation
Indices: 122708262--122708292 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
122708252 ACACATATGT
122708262 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
122708293 TCAACCCATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:122709720 original size:17 final size:18
Alignment explanation
Indices: 122709674--122709711 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
122709664 AACATAACCC
122709674 ACATCTAAAAATCAACTA
1 ACATCTAAAAATCAACTA
122709692 ACATCTAAAAATCAACTA
1 ACATCTAAAAATCAACTA
122709710 AC
1 AC
122709712 TTTCAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.24, G:0.00, T:0.21
Consensus pattern (18 bp):
ACATCTAAAAATCAACTA
Found at i:122709940 original size:5 final size:5
Alignment explanation
Indices: 122709932--122709981 Score: 50
Period size: 5 Copynumber: 9.6 Consensus size: 5
122709922 TATTTATGTT
122709932 TATTA TATTA TATTA T-TATA TTATTA TATTA -ATATA TTATTA TATTA
1 TATTA TATTA TATTA TAT-TA -TATTA TATTA TAT-TA -TATTA TATTA
122709979 TAT
1 TAT
122709982 ACTTAAGTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
4 3 0.08
5 28 0.72
6 5 0.13
7 3 0.08
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:122709948 original size:8 final size:8
Alignment explanation
Indices: 122709937--122709979 Score: 77
Period size: 8 Copynumber: 5.4 Consensus size: 8
122709927 ATGTTTATTA
122709937 TATTATAT
1 TATTATAT
122709945 TATTATAT
1 TATTATAT
122709953 TATTATAT
1 TATTATAT
*
122709961 TAATATAT
1 TATTATAT
122709969 TATTATAT
1 TATTATAT
122709977 TAT
1 TAT
122709980 ATACTTAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
TATTATAT
Found at i:122709987 original size:24 final size:25
Alignment explanation
Indices: 122709940--122709992 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 25
122709930 TTTATTATAT
122709940 TATATTATTATATTATTATATTAA-
1 TATATTATTATATTATTATATTAAG
122709964 TATATTATTATATTA-TATACTTAAG
1 TATATTATTATATTATTATA-TTAAG
122709989 TATA
1 TATA
122709993 AAGTATAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 4 0.15
24 19 0.70
25 4 0.15
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (25 bp):
TATATTATTATATTATTATATTAAG
Found at i:122713706 original size:25 final size:25
Alignment explanation
Indices: 122713672--122713735 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 25
122713662 GGCGCGACCC
122713672 ATTTTTTTAATAATATAATT-TATTT
1 ATTTTTTTAATAATATAATTAT-TTT
*
122713697 ATTTTTTT-A-AATATTATTATTTT
1 ATTTTTTTAATAATATAATTATTTT
122713720 ATTATATTTTAATAAT
1 ATT-T-TTTTAATAAT
122713736 TTTTAAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
23 14 0.42
24 3 0.09
25 12 0.36
26 1 0.03
27 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (25 bp):
ATTTTTTTAATAATATAATTATTTT
Found at i:122713709 original size:26 final size:27
Alignment explanation
Indices: 122713672--122713729 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 27
122713662 GGCGCGACCC
122713672 ATTTTTTTAATAATA-TAATTTATT-T
1 ATTTTTTTAATAATATTAATTTATTAT
* *
122713697 ATTTTTTTAAATATTATTATTTTATTAT
1 ATTTTTTT-AATAATATTAATTTATTAT
122713725 ATTTT
1 ATTTT
122713730 AATAATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 8 0.29
26 6 0.21
27 8 0.29
28 6 0.21
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (27 bp):
ATTTTTTTAATAATATTAATTTATTAT
Found at i:122713968 original size:3 final size:3
Alignment explanation
Indices: 122713953--122714018 Score: 71
Period size: 3 Copynumber: 21.7 Consensus size: 3
122713943 TGCAGCAGCA
*
122713953 AAG AGAG AA- AAG AAG AAG AAG AAG AAA AAG AAG AAG AAG AAG AAG
1 AAG A-AG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
* * *
122713998 GAG AAG GAG GAG AAAG AAG AA
1 AAG AAG AAG AAG -AAG AAG AA
122714019 AAATGTTAGT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
2 2 0.04
3 47 0.87
4 5 0.09
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:122715106 original size:11 final size:11
Alignment explanation
Indices: 122715071--122715098 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
122715061 GAGAGTAAGA
122715071 AATTTTAATGT
1 AATTTTAATGT
122715082 AATTTTAATGT
1 AATTTTAATGT
122715093 AATTTT
1 AATTTT
122715099 GATATAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (11 bp):
AATTTTAATGT
Found at i:122716724 original size:6 final size:6
Alignment explanation
Indices: 122716713--122716763 Score: 59
Period size: 6 Copynumber: 8.7 Consensus size: 6
122716703 ACCAGCTCCG
* * * *
122716713 GAGCCA GAGCCA GAGCCA GAGCCA GAGCCG GAGGCA GTGCCG GA-CCA
1 GAGCCA GAGCCA GAGCCA GAGCCA GAGCCA GAGCCA GAGCCA GAGCCA
122716760 GAGC
1 GAGC
122716764 GGCGGCCAGA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
5 4 0.11
6 32 0.89
ACGTcount: A:0.27, C:0.31, G:0.39, T:0.02
Consensus pattern (6 bp):
GAGCCA
Found at i:122716968 original size:32 final size:32
Alignment explanation
Indices: 122716898--122716971 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
122716888 CCACATCTGC
* *
122716898 ACTCTACTCCTCCCGGCTCATATCCACCATCGT
1 ACTCTACT-CTCCCGGCCCATATCCACCACCGT
* * *
122716931 ACTCTACTCTCCTGGCCCATATCCAGCGCCGT
1 ACTCTACTCTCCCGGCCCATATCCACCACCGT
*
122716963 TCTCTACTC
1 ACTCTACTC
122716972 CACCCGGCTC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
32 27 0.77
33 8 0.23
ACGTcount: A:0.16, C:0.45, G:0.11, T:0.28
Consensus pattern (32 bp):
ACTCTACTCTCCCGGCCCATATCCACCACCGT
Found at i:122721025 original size:25 final size:27
Alignment explanation
Indices: 122720986--122721042 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 27
122720976 AAAAATTATT
*
122720986 AAAATATAATAAAATAATAATATTCAA
1 AAAATATAATAAAATAATAATATTAAA
* *
122721013 AAAATA-AAT-AAATTATATTATTAAA
1 AAAATATAATAAAATAATAATATTAAA
122721038 AAAAT
1 AAAAT
122721043 GGGTCGCGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 18 0.67
26 3 0.11
27 6 0.22
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (27 bp):
AAAATATAATAAAATAATAATATTAAA
Found at i:122722150 original size:27 final size:27
Alignment explanation
Indices: 122722112--122722168 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
122722102 CAAGAAGATG
122722112 TGATAAGGGGTTGATCATTATTGAATC
1 TGATAAGGGGTTGATCATTATTGAATC
122722139 TGATAAGGGGTTGATCATTATTGAATC
1 TGATAAGGGGTTGATCATTATTGAATC
122722166 TGA
1 TGA
122722169 CTCTAGCTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (27 bp):
TGATAAGGGGTTGATCATTATTGAATC
Found at i:122724689 original size:17 final size:16
Alignment explanation
Indices: 122724660--122724700 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 16
122724650 AAATTCATTT
*
122724660 ATTTTTATATAAAATA
1 ATTTTTTTATAAAATA
122724676 ATTTGTTTTATAAAATA
1 ATTT-TTTTATAAAATA
122724693 ATTTTTTT
1 ATTTTTTT
122724701 GAAAAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (16 bp):
ATTTTTTTATAAAATA
Found at i:122724707 original size:17 final size:17
Alignment explanation
Indices: 122724670--122724707 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
122724660 ATTTTTATAT
*
122724670 AAAATAATTTGTTTTAT
1 AAAATAATTTGTTTTAA
122724687 AAAATAATTT-TTTTGAA
1 AAAATAATTTGTTTT-AA
122724704 AAAA
1 AAAA
122724708 ATTAGCAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (17 bp):
AAAATAATTTGTTTTAA
Found at i:122725473 original size:6 final size:6
Alignment explanation
Indices: 122725437--122725502 Score: 55
Period size: 6 Copynumber: 10.8 Consensus size: 6
122725427 GGCTTTTTGT
* * * *
122725437 GAGAGA GAGAGA GAGAGAG AAGAGG GAGAGG GAGAGG GAGGGAGG GGGAGG
1 GAGAGG GAGAGG GAGAG-G GAGAGG GAGAGG GAGAGG GA--GAGG GAGAGG
122725488 G-GA-G GAGAGG GAGAG
1 GAGAGG GAGAGG GAGAG
122725503 AGGAACAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
4 2 0.04
5 4 0.08
6 36 0.71
7 4 0.08
8 5 0.10
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (6 bp):
GAGAGG
Found at i:122725479 original size:10 final size:10
Alignment explanation
Indices: 122725464--122725502 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
122725454 AGAAGAGGGA
122725464 GAGGGAGAGG
1 GAGGGAGAGG
*
122725474 GAGGGAGGGG
1 GAGGGAGAGG
122725484 GAGGG-GAGG
1 GAGGGAGAGG
122725493 AGAGGGAGAG
1 -GAGGGAGAG
122725503 AGGAACAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 3 0.12
10 19 0.76
11 3 0.12
ACGTcount: A:0.28, C:0.00, G:0.72, T:0.00
Consensus pattern (10 bp):
GAGGGAGAGG
Found at i:122725487 original size:20 final size:20
Alignment explanation
Indices: 122725458--122725500 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
122725448 AGAGAGAGAA
122725458 GAGGGAGAGGGAGAGG-GAGG
1 GAGGGAGAGGG-GAGGAGAGG
*
122725478 GAGGGGGAGGGGAGGAGAGG
1 GAGGGAGAGGGGAGGAGAGG
122725498 GAG
1 GAG
122725501 AGAGGAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.28, C:0.00, G:0.72, T:0.00
Consensus pattern (20 bp):
GAGGGAGAGGGGAGGAGAGG
Found at i:122725499 original size:14 final size:16
Alignment explanation
Indices: 122725458--122725502 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
122725448 AGAGAGAGAA
122725458 GAGGGAGAGGGAGAGG
1 GAGGGAGAGGGAGAGG
*
122725474 GAGGGAGGGGGAG-GG
1 GAGGGAGAGGGAGAGG
122725489 GA-GGAGAGGGAGAG
1 GAGGGAGAGGGAGAG
122725503 AGGAACAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 9 0.35
15 5 0.19
16 12 0.46
ACGTcount: A:0.29, C:0.00, G:0.71, T:0.00
Consensus pattern (16 bp):
GAGGGAGAGGGAGAGG
Found at i:122731927 original size:2 final size:2
Alignment explanation
Indices: 122731922--122731946 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
122731912 CATTTTTTAT
122731922 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
122731947 TCTTATATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:122732039 original size:20 final size:21
Alignment explanation
Indices: 122732011--122732051 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
122732001 ATACTATAAG
122732011 ATTATTTTATCATACATTATT
1 ATTATTTTATCATACATTATT
* *
122732032 ATTA-TTTATCGTATATTATT
1 ATTATTTTATCATACATTATT
122732052 TTTCACAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTATTTTATCATACATTATT
Found at i:122732095 original size:31 final size:33
Alignment explanation
Indices: 122732011--122732097 Score: 108
Period size: 34 Copynumber: 2.6 Consensus size: 33
122732001 ATACTATAAG
122732011 ATTATTTTATCATACATTATTATTATTTATCGTAT
1 ATTATTTT-TCATACATTATTATTATTTATC-TAT
* *
122732046 ATTATTTTTCACAAATTATTATTA-TTAT-TAT
1 ATTATTTTTCATACATTATTATTATTTATCTAT
122732077 CATTATTTTT-ATACATTATTA
1 -ATTATTTTTCATACATTATTA
122732098 ATATATTTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
31 12 0.26
32 9 0.19
33 4 0.09
34 14 0.30
35 8 0.17
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.57
Consensus pattern (33 bp):
ATTATTTTTCATACATTATTATTATTTATCTAT
Found at i:122732262 original size:23 final size:23
Alignment explanation
Indices: 122732214--122732277 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
122732204 ATATATTCAA
122732214 ATTATGTTTTATTCTATA-ACGTTT
1 ATTAT-TTTTATTCTATATACG-TT
122732238 ATTATTTTTATTCTATATTAC-TT
1 ATTATTTTTATTCTATA-TACGTT
*
122732261 ATTATTTTT-TTATATAT
1 ATTATTTTTATTCTATAT
122732278 GTTATGTATA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
21 1 0.03
22 6 0.16
23 23 0.62
24 5 0.14
25 2 0.05
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (23 bp):
ATTATTTTTATTCTATATACGTT
Found at i:122732303 original size:12 final size:12
Alignment explanation
Indices: 122732251--122732312 Score: 56
Period size: 12 Copynumber: 5.2 Consensus size: 12
122732241 ATTTTTATTC
*
122732251 TATATTACTTAT
1 TATATTATTTAT
*
122732263 TAT-TTTTTTAT
1 TATATTATTTAT
* *
122732274 ATATGTTATGTA-
1 -TATATTATTTAT
122732286 TATATTATTTAT
1 TATATTATTTAT
*
122732298 TATATTATTTGT
1 TATATTATTTAT
122732310 TAT
1 TAT
122732313 TCATTATATT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
11 15 0.38
12 20 0.50
13 5 0.12
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.65
Consensus pattern (12 bp):
TATATTATTTAT
Found at i:122734193 original size:54 final size:54
Alignment explanation
Indices: 122734003--122734210 Score: 215
Period size: 53 Copynumber: 3.9 Consensus size: 54
122733993 TTTCCTTTTT
* * *
122734003 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * ** **
122734056 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTTCTTATA
1 GAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* * * * *
122734110 GTAACTTATCAATACCATGTCTTAACATGGTCTTACATGATTTCCTTGCCTAATA
1 G-AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* *
122734165 GAACTTATCAATGCCATG-CATTGGCATGGTCTTACATGATATCCTT
1 GAACTTACCAATGCCATGTC-TTGACATGGTCTTACATGATATCCTT
122734211 ATGTTACCAA
Statistics
Matches: 126, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
52 2 0.02
53 43 0.34
54 40 0.32
55 39 0.31
56 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
GAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:122734337 original size:47 final size:46
Alignment explanation
Indices: 122734173--122734398 Score: 163
Period size: 47 Copynumber: 4.8 Consensus size: 46
122734163 TAGAACTTAT
* * ** *
122734173 CAATGCCATG-CATTGGCATGGTCTTACATGATATCCTTAT-GTTAC
1 CAATGCCATGTC-TTGACATGGTCTTACATGGTATCCTTATCAATGC
*** *
122734218 CAAATGCCATGTTCCAAACATGGTCTTACATGGTAACCTTATCTTAATGC
1 C-AATGCCATG-TCTTGACATGGTCTTACATGGTATCCTTATC--AATGC
* ** **
122734268 CAATGTCACATCTTGATGTGGTCTTACATGG-AGTCCTTAATCAATGC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTA-TCCTT-ATCAATGC
* * * ** *
122734315 CAATGCCATGTCTTGACATGGTCTTACACGGAATCCTT-GCCTTAC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTATCAATGC
* *
122734360 TAATGCCATGTCTTGACATGATCTTACATGGTATCCTTA
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTA
122734399 ACCGTCAATT
Statistics
Matches: 139, Mismatches: 32, Indels: 19
0.73 0.17 0.10
Matches are distributed among these distances:
45 38 0.27
46 9 0.06
47 58 0.42
48 22 0.16
49 9 0.06
50 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (46 bp):
CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTATCAATGC
Found at i:122735727 original size:28 final size:28
Alignment explanation
Indices: 122735687--122735742 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
122735677 AAAAAAACTT
*
122735687 GTTTCTCTTTTGAGTGTCAATATTCTTA
1 GTTTCTCTCTTGAGTGTCAATATTCTTA
122735715 GTTTCTCTCTTGAGTGTCAATATTCTTA
1 GTTTCTCTCTTGAGTGTCAATATTCTTA
122735743 CCTTTAGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.52
Consensus pattern (28 bp):
GTTTCTCTCTTGAGTGTCAATATTCTTA
Found at i:122739492 original size:2 final size:2
Alignment explanation
Indices: 122739485--122739514 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
122739475 TAACTCACTG
122739485 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122739515 TAAGATTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122742958 original size:55 final size:53
Alignment explanation
Indices: 122742833--122743021 Score: 220
Period size: 55 Copynumber: 3.5 Consensus size: 53
122742823 AACTTACCAT
* *
122742833 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * * *
122742886 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGTCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * *
122742941 TACCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
*
122742995 TGCCATG-CATTGGCATGGTCTTACATG
1 TGCCATGTC-TTGACATGGTCTTACATG
122743022 ATATCCTTAT
Statistics
Matches: 115, Mismatches: 16, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
52 2 0.02
53 35 0.30
54 33 0.29
55 43 0.37
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:122743155 original size:47 final size:47
Alignment explanation
Indices: 122743053--122743215 Score: 129
Period size: 47 Copynumber: 3.5 Consensus size: 47
122743043 CATGTTCCAA
*
122743053 ACATGGTCTTACATGGTATCCTTATCTTAATGCCAATGTCACATCTTG
1 ACATGGTCTTACATGGTATCCTTATC-TAATGCCAATGCCACATCTTG
** * **
122743101 ATGTGGTCTTACATGG-AGTCCTTAATC-AATGCCGATGCCATGTCTTG
1 ACATGGTCTTACATGGTA-TCCTT-ATCTAATGCCAATGCCACATCTTG
** ** * * **
122743148 ACATGGTCTTACACAG-ATCCTTGCCT--TACTAATGCCATGTCTTG
1 ACATGGTCTTACATGGTATCCTTATCTAATGCCAATGCCACATCTTG
*
122743192 ACATGATCTTACATGGTATCCTTA
1 ACATGGTCTTACATGGTATCCTTA
122743216 ACCGTCAATT
Statistics
Matches: 92, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
44 28 0.30
45 7 0.08
46 5 0.05
47 30 0.33
48 19 0.21
49 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (47 bp):
ACATGGTCTTACATGGTATCCTTATCTAATGCCAATGCCACATCTTG
Found at i:122745290 original size:3 final size:3
Alignment explanation
Indices: 122745277--122745318 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
122745267 ATAAATACAC
122745277 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
122745319 ATATTGAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:122745406 original size:34 final size:34
Alignment explanation
Indices: 122745354--122745418 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
122745344 AAATGTAAAT
* *
122745354 AAAATTAAGGAGCAAATTTAAAATAAAAATATTA
1 AAAATAAAAGAGCAAATTTAAAATAAAAATATTA
* *
122745388 AAAATAAAAGAGCGAATTTAAAATATAAATA
1 AAAATAAAAGAGCAAATTTAAAATAAAAATA
122745419 AAATTAAGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.63, C:0.03, G:0.09, T:0.25
Consensus pattern (34 bp):
AAAATAAAAGAGCAAATTTAAAATAAAAATATTA
Found at i:122745455 original size:3 final size:3
Alignment explanation
Indices: 122745442--122745495 Score: 99
Period size: 3 Copynumber: 17.7 Consensus size: 3
122745432 ATAAATATAC
122745442 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
122745488 AAT AAT AA
1 AAT AAT AA
122745496 ATATTGAAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 47 0.94
4 3 0.06
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:122747393 original size:22 final size:22
Alignment explanation
Indices: 122747367--122747427 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 22
122747357 CCATTAGAAT
*
122747367 AAAAAATAGAAATTAAAAAAACC
1 AAAAAA-AGAAAATAAAAAAACC
*
122747390 AAAAAAATAAAATAAAAAAAACAC
1 AAAAAAAGAAAAT-AAAAAAAC-C
*
122747414 ACAAACAAGAAAAT
1 A-AAAAAAGAAAAT
122747428 CCAAATACCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
22 5 0.16
23 14 0.45
24 2 0.06
25 10 0.32
ACGTcount: A:0.77, C:0.10, G:0.03, T:0.10
Consensus pattern (22 bp):
AAAAAAAGAAAATAAAAAAACC
Found at i:122747402 original size:23 final size:24
Alignment explanation
Indices: 122747367--122747411 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
122747357 CCATTAGAAT
*
122747367 AAAAAATAGAAATTAAAAAAACCA
1 AAAAAATAGAAATAAAAAAAACCA
122747391 AAAAAATA-AAATAAAAAAAAC
1 AAAAAATAGAAATAAAAAAAAC
122747412 ACACAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.80, C:0.07, G:0.02, T:0.11
Consensus pattern (24 bp):
AAAAAATAGAAATAAAAAAAACCA
Found at i:122747977 original size:21 final size:20
Alignment explanation
Indices: 122747951--122747989 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
122747941 AACCCATTAA
122747951 ACCCCAAAACCCAACTAACCC
1 ACCCCAAAACCCAA-TAACCC
122747972 ACCCCAAAACCCAATAAC
1 ACCCCAAAACCCAATAAC
122747990 TAAACCTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.49, G:0.00, T:0.05
Consensus pattern (20 bp):
ACCCCAAAACCCAATAACCC
Found at i:122749320 original size:17 final size:17
Alignment explanation
Indices: 122749298--122749331 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
122749288 TATCCACTTT
122749298 TTATATTATTATTATTA
1 TTATATTATTATTATTA
*
122749315 TTATATTATTTTTATTA
1 TTATATTATTATTATTA
122749332 CTATGGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTATATTATTATTATTA
Found at i:122749330 original size:14 final size:15
Alignment explanation
Indices: 122749295--122749331 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
122749285 TTTTATCCAC
122749295 TTTTTA-TATTATTA
1 TTTTTATTATTATTA
*
122749309 TTATTATTA-TATTA
1 TTTTTATTATTATTA
122749323 TTTTTATTA
1 TTTTTATTA
122749332 CTATGGTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 18 0.90
15 2 0.10
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTTATTATTATTA
Found at i:122749629 original size:12 final size:12
Alignment explanation
Indices: 122749602--122749654 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 12
122749592 AGTACCATTA
* *
122749602 TTATATATATAT
1 TTATGTATATAC
*
122749614 TTATGTACATAC
1 TTATGTATATAC
*
122749626 TTA--TATATAT
1 TTATGTATATAC
122749636 TTATGTATATAC
1 TTATGTATATAC
122749648 TTATGTA
1 TTATGTA
122749655 ATATGTGAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 8 0.24
12 25 0.76
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.53
Consensus pattern (12 bp):
TTATGTATATAC
Found at i:122749630 original size:22 final size:22
Alignment explanation
Indices: 122749605--122749651 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
122749595 ACCATTATTA
122749605 TATATATATTTATGTACATACT
1 TATATATATTTATGTACATACT
*
122749627 TATATATATTTATGTATATACT
1 TATATATATTTATGTACATACT
122749649 TAT
1 TAT
122749652 GTAATATGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.53
Consensus pattern (22 bp):
TATATATATTTATGTACATACT
Found at i:122762030 original size:28 final size:28
Alignment explanation
Indices: 122761998--122762054 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
122761988 AACGTCGATA
122761998 CTCGTGAAGCTTGAAGACAGGTACATAG
1 CTCGTGAAGCTTGAAGACAGGTACATAG
122762026 CTCGTGAAGCTTGAAGACAGGTACATAG
1 CTCGTGAAGCTTGAAGACAGGTACATAG
122762054 C
1 C
122762055 GTAAAGAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (28 bp):
CTCGTGAAGCTTGAAGACAGGTACATAG
Found at i:122762469 original size:74 final size:74
Alignment explanation
Indices: 122762372--122762619 Score: 402
Period size: 74 Copynumber: 3.4 Consensus size: 74
122762362 AAATGAGTTG
122762372 AGCCTCAGGTCACGCGCTGAGGTATTTTTAATTTATGTTTCAAAAAATTGACTCATATTGCGAGA
1 AGCCTCAGGTCACGCGCTGAGGTATTTTTAATTTATGTTTCAAAAAATTGACTCATATTGCGAGA
122762437 GGTGAGTCA
66 GGTGAGTCA
122762446 AGCCTCAGGTCACGCGCTGAGGTATTTTTAATTTATGTTTCAAAAAATTGACTCATATTGCGAGA
1 AGCCTCAGGTCACGCGCTGAGGTATTTTTAATTTATGTTTCAAAAAATTGACTCATATTGCGAGA
122762511 GGTGAGTCA
66 GGTGAGTCA
* * * * *
122762520 AGCCTCAGGTCACACACT---GTATTTTTAGTTTATGTTT-TAAAAATTGACTCATATTGTGAGA
1 AGCCTCAGGTCACGCGCTGAGGTATTTTTAATTTATGTTTCAAAAAATTGACTCATATTGCGAGA
122762581 GGTGAGTCA
66 GGTGAGTCA
122762590 AGCCTCAGGTCA--CGCTGAGGTA-TTTTAATT
1 AGCCTCAGGTCACGCGCTGAGGTATTTTTAATT
122762620 CCTTTTGTTT
Statistics
Matches: 164, Mismatches: 7, Indels: 10
0.91 0.04 0.06
Matches are distributed among these distances:
68 3 0.02
70 50 0.30
71 21 0.13
74 90 0.55
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (74 bp):
AGCCTCAGGTCACGCGCTGAGGTATTTTTAATTTATGTTTCAAAAAATTGACTCATATTGCGAGA
GGTGAGTCA
Found at i:122762749 original size:114 final size:115
Alignment explanation
Indices: 122762538--122762748 Score: 295
Period size: 114 Copynumber: 1.8 Consensus size: 115
122762528 GTCACACACT
* *
122762538 GTATTTTTAGTTTATGTTTTAAAAATTGACTCATATTGTGAGAGGTGAGTCAAGCCTCAGGTCAC
1 GTATTTTTAGTTTATGTTTTAAAAATT-ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGACAC
* *
122762603 GCTGAGGTATTTTAATTCCTTTTGTTTCAAAAATCAGCTCATGCACGCTGAG
65 GCTGAGGTATTTCAATTCCTGTTG-TTCAAAAATCAGCTCATGCACGCTGAG
**
122762655 GTATTTTTAGTTTATG-TTTAGAAAA-T-CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 GTATTTTTAGTTTATGTTTTA-AAAATTACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGACAC
*
122762717 GCTGAGGTAATTTCAATTTCTGTTG-TCAAAAA
65 GCTGAGGT-ATTTCAATTCCTGTTGTTCAAAAA
122762749 AAAACCAACT
Statistics
Matches: 85, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
113 7 0.08
114 40 0.47
115 13 0.15
116 5 0.06
117 20 0.24
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.37
Consensus pattern (115 bp):
GTATTTTTAGTTTATGTTTTAAAAATTACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGACACG
CTGAGGTATTTCAATTCCTGTTGTTCAAAAATCAGCTCATGCACGCTGAG
Found at i:122763741 original size:21 final size:20
Alignment explanation
Indices: 122763715--122763753 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
122763705 AACCCATTAA
*
122763715 ACCCCACAACCCAACTAACCC
1 ACCCCAAAACCCAA-TAACCC
122763736 ACCCCAAAACCCAATAAC
1 ACCCCAAAACCCAATAAC
122763754 TAAACCTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.44, C:0.51, G:0.00, T:0.05
Consensus pattern (20 bp):
ACCCCAAAACCCAATAACCC
Found at i:122765066 original size:14 final size:14
Alignment explanation
Indices: 122765047--122765077 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
122765037 TATCCACTTT
122765047 TTATATTATTATTA
1 TTATATTATTATTA
*
122765061 TTATATTATTTTTA
1 TTATATTATTATTA
122765075 TTA
1 TTA
122765078 CTATGGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTATATTATTATTA
Found at i:122771090 original size:2 final size:2
Alignment explanation
Indices: 122771083--122771112 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
122771073 GCCTAAAAAC
122771083 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122771113 TTACAAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122774027 original size:53 final size:54
Alignment explanation
Indices: 122773946--122774047 Score: 188
Period size: 53 Copynumber: 1.9 Consensus size: 54
122773936 AACAAGGTCC
*
122773946 ATTGCATATATTATCATTTATTAGAATACTTTTACACGTTCAATACATTCAGCT
1 ATTGCATATATTATCATTTATTAGAATACTTTCACACGTTCAATACATTCAGCT
122774000 ATTGCA-ATATTATCATTTATTAGAATACTTTCACACGTTCAATACATT
1 ATTGCATATATTATCATTTATTAGAATACTTTCACACGTTCAATACATT
122774048 TAACTAGGGG
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 41 0.87
54 6 0.13
ACGTcount: A:0.34, C:0.17, G:0.07, T:0.42
Consensus pattern (54 bp):
ATTGCATATATTATCATTTATTAGAATACTTTCACACGTTCAATACATTCAGCT
Found at i:122777456 original size:2 final size:2
Alignment explanation
Indices: 122777412--122777438 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
122777402 TGAACTCATA
122777412 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
122777439 ATTTGTAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:122778955 original size:26 final size:26
Alignment explanation
Indices: 122778919--122779002 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
122778909 TGATATAAAT
*
122778919 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
122778945 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
122778971 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
122778997 TGATAA
1 TGATAA
122779003 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:122782947 original size:19 final size:21
Alignment explanation
Indices: 122782923--122782961 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
122782913 TTGTTTGTGT
122782923 GTTTTTT-ATTT-TATTTTTG
1 GTTTTTTAATTTCTATTTTTG
122782942 GTTTTTTAATTTCTATTTTT
1 GTTTTTTAATTTCTATTTTT
122782962 ATTTTAATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
20 4 0.22
21 7 0.39
ACGTcount: A:0.13, C:0.03, G:0.08, T:0.77
Consensus pattern (21 bp):
GTTTTTTAATTTCTATTTTTG
Found at i:122782966 original size:20 final size:19
Alignment explanation
Indices: 122782924--122782966 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
122782914 TGTTTGTGTG
*
122782924 TTTTTTATTTTATTTTTGG
1 TTTTTTATTTTATTTTTGA
122782943 TTTTTTAATTTCTATTTTT-A
1 TTTTTT-ATTT-TATTTTTGA
122782963 TTTT
1 TTTT
122782967 AATGGGCCCG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
20 8 0.38
21 7 0.33
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (19 bp):
TTTTTTATTTTATTTTTGA
Found at i:122785222 original size:25 final size:26
Alignment explanation
Indices: 122785128--122785236 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
122785118 TGATACAAAT
122785128 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
122785154 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
122785180 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
122785206 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
122785231 TGATAA
1 TGATAA
122785237 GAATTTCATG
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 24 0.30
26 57 0.70
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:122786754 original size:24 final size:24
Alignment explanation
Indices: 122786719--122786765 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
122786709 ACAGTTTTAC
122786719 CCCTAGGATAAATT-ACCGAAATA
1 CCCTAGGATAAATTGACCGAAATA
* *
122786742 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTA-GGATAAATTGACCGAAAT
122786766 GCATGTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 8 0.40
25 7 0.35
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
CCCTAGGATAAATTGACCGAAATA
Found at i:122791022 original size:25 final size:26
Alignment explanation
Indices: 122790929--122791036 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
122790919 TGATACAAAT
122790929 TGATAATA-GTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
122790954 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
122790980 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
122791006 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
122791031 TGATAA
1 TGATAA
122791037 GAATTTCATG
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
25 32 0.40
26 48 0.60
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:122798196 original size:30 final size:30
Alignment explanation
Indices: 122798137--122798196 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
122798127 TATTTTATTA
* *
122798137 TTAATTTTTTTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGACATTTG
* *
122798167 TTAATTTTATTATTATTTTAGAGATATTTG
1 TTAATTTTATTATTATTTTAAAGACATTTG
122798197 CTTGTTAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.02, G:0.10, T:0.60
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGACATTTG
Found at i:122805907 original size:2 final size:2
Alignment explanation
Indices: 122805900--122805925 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
122805890 CAGAAACTTC
122805900 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
122805926 TTTTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122808679 original size:32 final size:32
Alignment explanation
Indices: 122808610--122808679 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
122808600 CGAACATAAT
*
122808610 ATAATCATAATATAATTTTAATTTTTTACCTC
1 ATAATTATAATATAATTTTAATTTTTTACCTC
*
122808642 ATAATTATAATATACTTTTAATTTTTTACCTC
1 ATAATTATAATATAATTTTAATTTTTTACCTC
122808674 ATAATT
1 ATAATT
122808680 GTAGCGCATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.51
Consensus pattern (32 bp):
ATAATTATAATATAATTTTAATTTTTTACCTC
Found at i:122818890 original size:69 final size:69
Alignment explanation
Indices: 122818806--122819207 Score: 394
Period size: 69 Copynumber: 5.8 Consensus size: 69
122818796 GCTTTTCGTA
* * * * * *
122818806 TGCGAACTTTATTTTTACAGTTGGGAGCTTTGCTCTCACTAACTATTTTAGAGGTTGCGGCTCTT
1 TGCGAACCTTGTTTTTACAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAGAGGCTACAGCTCTT
122818871 CACC
66 CACC
* * *
122818875 TAG-GAACATTGTTTTTACAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAGAGCCTACAACTCT
1 T-GCGAACCTTGTTTTTACAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAGAGGCTACAGCTCT
122818939 TCACC
65 TCACC
* * * * * * * *
122818944 TGCGAACCTTGTTTTTACAGCTAGGATCTTAGCTTTCGCTAACTGTTTTAGAGGCTACGGCTTTT
1 TGCGAACCTTGTTTTTACAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAGAGGCTACAGCTCTT
* *
122819009 CGCT
66 CACC
* * ** * * *
122819013 TGTGAACCTTGTTTTCACACCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGCTGCAGCTTTT
1 TGCGAACCTTGTTTTTACAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAGAGGCTACAGCTCTT
**
122819078 TGCC
66 CACC
* * *
122819082 TGCGAACCTTGTTTTTACCGTTGGGAGCTTTGCTCTCTCTAACTGTTTTAGAGGCTAC-GATTCT
1 TGCGAACCTTGTTTTTACAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAGAGGCTACAG-CTCT
*
122819146 TCGCC
65 TCACC
* * * * ** ** * *
122819151 TGTGAACCTTATTTTCACAATTAAGAGCTTTGCTCTTGCTAATTGTTTTAAAGGCTA
1 TGCGAACCTTGTTTTTACAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAGAGGCTA
122819208 TGGCTCTTTG
Statistics
Matches: 277, Mismatches: 53, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
68 2 0.01
69 274 0.99
70 1 0.00
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (69 bp):
TGCGAACCTTGTTTTTACAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAGAGGCTACAGCTCTT
CACC
Found at i:122818922 original size:34 final size:34
Alignment explanation
Indices: 122818817--122818923 Score: 87
Period size: 33 Copynumber: 3.1 Consensus size: 34
122818807 GCGAACTTTA
122818817 TTTTTACAGTTGGGAGCTTTGCTCTCACTAACT-
1 TTTTTACAGTTGGGAGCTTTGCTCTCACTAACTG
* * * * **
122818850 ATTTTAGAGGTTGCG-GCTCTT-CAC-CTAGGAACATTG
1 TTTTTACA-GTTGGGAGCT-TTGCTCTC-ACTAAC--TG
122818886 TTTTTACAGTTGGGAGCTTTGCTCTCACTAACTG
1 TTTTTACAGTTGGGAGCTTTGCTCTCACTAACTG
122818920 TTTT
1 TTTT
122818924 AGAGCCTACA
Statistics
Matches: 53, Mismatches: 12, Indels: 17
0.65 0.15 0.21
Matches are distributed among these distances:
32 1 0.02
33 15 0.28
34 13 0.25
35 8 0.15
36 15 0.28
37 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.41
Consensus pattern (34 bp):
TTTTTACAGTTGGGAGCTTTGCTCTCACTAACTG
Found at i:122819200 original size:207 final size:207
Alignment explanation
Indices: 122818827--122819220 Score: 515
Period size: 207 Copynumber: 1.9 Consensus size: 207
122818817 TTTTTACAGT
* *
122818827 TGGGAGCTTTGCTCTCACTAACTATTTTAGAGGTTGCGGCTCTTCACCTAGGAACATTGTTTTTA
1 TGGGAGCTTTGCTCTCACTAACTATTTTAGAGGCTGCAGCTCTTCACCTAGGAACATTGTTTTTA
*
122818892 CAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAGAGCCTACAACTCTTCACCTGCGAACCTTGTT
66 CAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAGAGCCTACAACTCTTCACCTGCGAACCTTATT
* * * * *
122818957 TTTACAGCTAGGATCTTAGCTTTCGCTAACTGTTTTAGAGGCTACGGCT-TTTCGCTTGTGAACC
131 TTCACAACTAAGAGCTTAGCTTTCGCTAACTGTTTTAAAGGCTACGGCTCTTT-GCTTGTGAACC
122819021 TTGTTTTCACACC
195 TTGTTTTCACACC
* * * ** *
122819034 TGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGCTGCAGCTTTTTGCCT-GCGAACCTTGTTTTT
1 TGGGAGCTTTGCTCTCACTAACTATTTTAGAGGCTGCAGCTCTTCACCTAG-GAACATTGTTTTT
* * * * * * *
122819098 ACCGTTGGGAGCTTTGCTCTCTCTAACTGTTTTAGAGGCTACGATTCTTCGCCTGTGAACCTTAT
65 ACAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAGAGCCTACAACTCTTCACCTGCGAACCTTAT
* * * *
122819163 TTTCACAATTAAGAGCTTTGCTCTT-GCTAATTGTTTTAAAGGCTATGGCTCTTTGCTT
130 TTTCACAACTAAGAGCTTAGCT-TTCGCTAACTGTTTTAAAGGCTACGGCTCTTTGCTT
122819221 ACAACTTATT
Statistics
Matches: 159, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
206 1 0.01
207 153 0.96
208 5 0.03
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.39
Consensus pattern (207 bp):
TGGGAGCTTTGCTCTCACTAACTATTTTAGAGGCTGCAGCTCTTCACCTAGGAACATTGTTTTTA
CAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAGAGCCTACAACTCTTCACCTGCGAACCTTATT
TTCACAACTAAGAGCTTAGCTTTCGCTAACTGTTTTAAAGGCTACGGCTCTTTGCTTGTGAACCT
TGTTTTCACACC
Found at i:122819218 original size:138 final size:138
Alignment explanation
Indices: 122818727--122819245 Score: 456
Period size: 138 Copynumber: 3.8 Consensus size: 138
122818717 AGGTTATAAA
* * * * ** * * * * *
122818727 ATTCTTCGCCAGTGAGCTTTGTTTTTACAATTGGGAGCTTTAATTTCGTTAATTATTTTAGAAGC
1 ATTCTTCGCCTGTGAACCTTGTTTTCACAATTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGC
* ** * * *
122818792 TGA-GGCT-TTTCGTATGCGAACTTTATTTTTACAGTTGGGAGCTTTGCTCTCACTAACTATTTT
66 T-ACAGCTCTTT-GCCTGCGAACCTTGTTTTTACAGTTGGGAGCTTTGCTCTCACTAACTGTTTT
* *
122818855 AGAGGTTGCG
129 AGAGGCTACG
** * * * * * *
122818865 GCTCTTCACCTAG-GAACATTGTTTTTACAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAGAGC
1 ATTCTTCGCCT-GTGAACCTTGTTTTCACAATTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGG
* ** * * * * * *
122818929 CTACAACTCTTCACCTGCGAACCTTGTTTTTACAGCTAGGATCTTAGCTTTCGCTAACTGTTTTA
65 CTACAGCTCTTTGCCTGCGAACCTTGTTTTTACAGTTGGGAGCTTTGCTCTCACTAACTGTTTTA
122818994 GAGGCTACGG
130 GAGGCTAC-G
* * **
122819004 CTT-TTCGCTTGTGAACCTTGTTTTCACACCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGC
1 ATTCTTCGCCTGTGAACCTTGTTTTCACAATTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGC
* * * *
122819068 TGCAGCTTTTTGCCTGCGAACCTTGTTTTTACCGTTGGGAGCTTTGCTCTCTCTAACTGTTTTAG
66 TACAGCTCTTTGCCTGCGAACCTTGTTTTTACAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAG
122819133 AGGCTACG
131 AGGCTACG
* ** * * *
122819141 ATTCTTCGCCTGTGAACCTTATTTTCACAATTAAGAGCTTTGCTCTTGCTAATTGTTTTAAAGGC
1 ATTCTTCGCCTGTGAACCTTGTTTTCACAATTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGC
** * * * *
122819206 TATGGCTCTTTGCTTAC-AA-CTTATTTTTACAGTTGAGAGC
66 TACAGCTCTTTGCCTGCGAACCTTGTTTTTACAGTTGGGAGC
122819246 GAGGTTGTGG
Statistics
Matches: 301, Mismatches: 74, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
136 18 0.06
137 7 0.02
138 271 0.90
139 5 0.02
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.40
Consensus pattern (138 bp):
ATTCTTCGCCTGTGAACCTTGTTTTCACAATTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGC
TACAGCTCTTTGCCTGCGAACCTTGTTTTTACAGTTGGGAGCTTTGCTCTCACTAACTGTTTTAG
AGGCTACG
Found at i:122826867 original size:23 final size:23
Alignment explanation
Indices: 122826840--122826887 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
122826830 AAAAATAAAG
122826840 TAAAACATTTTTAAGAAAAACAA
1 TAAAACATTTTTAAGAAAAACAA
122826863 TAAAACATTTTTAAGAAAAACAA
1 TAAAACATTTTTAAGAAAAACAA
122826886 TA
1 TA
122826888 TATAACAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.60, C:0.08, G:0.04, T:0.27
Consensus pattern (23 bp):
TAAAACATTTTTAAGAAAAACAA
Found at i:122828484 original size:19 final size:19
Alignment explanation
Indices: 122828462--122828537 Score: 66
Period size: 19 Copynumber: 3.8 Consensus size: 19
122828452 TAATAATAAT
122828462 ATAAAATAATAATATGTAC
1 ATAAAATAATAATATGTAC
*
122828481 ATAAAATACATATATATATATGC
1 ATAAAATA-ATA-ATATGTA--C
*
122828504 ATATAATAA-AAGTATGTA-
1 ATAAAATAATAA-TATGTAC
122828522 ATAATAATAATAATAT
1 ATAA-AATAATAATAT
122828538 CTATAATAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
18 3 0.07
19 16 0.35
20 6 0.13
21 12 0.26
22 1 0.02
23 8 0.17
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.34
Consensus pattern (19 bp):
ATAAAATAATAATATGTAC
Found at i:122828826 original size:2 final size:2
Alignment explanation
Indices: 122828821--122828864 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
122828811 CATTAAAAAA
* * *
122828821 AT AT AT AT AC AT A- AT AT AT AT AA AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122828862 AT A
1 AT A
122828865 CGTATTAGAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:122829200 original size:11 final size:11
Alignment explanation
Indices: 122829166--122829207 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
122829156 AAATCATTTT
122829166 GAAGAGAGAAA
1 GAAGAGAGAAA
* *
122829177 GAA-AAAAAAA
1 GAAGAGAGAAA
*
122829187 GAAGGGAGAAA
1 GAAGAGAGAAA
122829198 GAAGAGAGAA
1 GAAGAGAGAA
122829208 GGGAGGGGGG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:122829281 original size:17 final size:18
Alignment explanation
Indices: 122829239--122829287 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
122829229 GCCAAGGGGG
* *
122829239 GCCGGTCACCGGCCGATC
1 GCCGGCCACCGCCCGATC
*
122829257 GTCGGCCACCGCCCG-TC
1 GCCGGCCACCGCCCGATC
122829274 GCCGGCCACCGCCC
1 GCCGGCCACCGCCC
122829288 ACGGTGGCCG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
17 15 0.56
18 12 0.44
ACGTcount: A:0.08, C:0.53, G:0.31, T:0.08
Consensus pattern (18 bp):
GCCGGCCACCGCCCGATC
Found at i:122829706 original size:26 final size:26
Alignment explanation
Indices: 122829669--122829738 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
122829659 TTTTTTGGGG
122829669 GGGTTAGG-TTTTTCTTTTTTTTTTT
1 GGGTTAGGTTTTTTCTTTTTTTTTTT
122829694 GGGTTAGGTTTTTTCTTTTTTTTTTT
1 GGGTTAGGTTTTTTCTTTTTTTTTTT
*
122829720 TGGTTAGGTTTTTT-TTTTT
1 GGGTTAGGTTTTTTCTTTTT
122829739 GGGAGGGCTT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
25 13 0.30
26 30 0.70
ACGTcount: A:0.04, C:0.03, G:0.20, T:0.73
Consensus pattern (26 bp):
GGGTTAGGTTTTTTCTTTTTTTTTTT
Found at i:122830499 original size:88 final size:85
Alignment explanation
Indices: 122830383--122830815 Score: 293
Period size: 88 Copynumber: 5.0 Consensus size: 85
122830373 GACTCTCTAA
** * *
122830383 AAACAGACATTAAAAACAGAAATTGAAAATAGCTCAGCGCATGAGCCAAGGCTCAACTCACCTCT
1 AAACAGA-ATTAAAAACAGATTTTGAAAATACCTC-GCACATGAGCCAAGGCTCAACTCACCTCT
122830448 CGCAATATGAGTTGATTTTTTG
64 CGCAATATGAGTTGATTTTTTG
** ** * * ** *
122830470 AAACTTAACTTGAAAAGTAGATTTTGAAAATACCTCG-ATATGTGACTGGAGGTTCAACTCACCT
1 AAACAGAA-TT-AAAAACAGATTTTGAAAATACCTCGCACATGAG-C-CAAGGCTCAACTCACCT
122830534 CTCGCAATATGAGTTGA-TTTTTG
62 CTCGCAATATGAGTTGATTTTTTG
** ** * * * * * *
122830557 AAAAACAGAAATTAAAAGACTCA-ACT-CAACT--CTCGCAGAAATTA--AAAAGCTCAACTCAC
1 --AAACAG-AATTAAAA-ACAGATTTTGAAAATACCTCGC--ACATGAGCCAAGGCTCAACTCAC
122830616 CTCTCGCAATATGAGTTGAATTTTTTG
60 CTCTCGCAATATGAGTTG-ATTTTTTG
** * * *
122830643 -AA-A-AA--AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTC
1 AAACAGAATTAAAAACAGATTTTGAAAATACCTC-GCACATGAGCCAAGGCTCAACTCACCTCTC
122830703 GCAATATGAGTTGA-TTTTTG
65 GCAATATGAGTTGATTTTTTG
* * *
122830723 AAAACAGAATTTGAAAAACAGATTTTGAAAATACCTCG-ACATGTGACCCGAGGCTCAACTCACA
1 -AAACAGAA-TT-AAAAACAGATTTTGAAAATACCTCGCACA--TGAGCCAAGGCTCAACTCACC
*
122830787 TCTCGCAATGTGAGTTGATTTTTTTG
61 TCTCGCAATATGAGTTGA-TTTTTTG
122830813 AAA
1 AAA
122830816 AATATAAATT
Statistics
Matches: 265, Mismatches: 49, Indels: 62
0.70 0.13 0.16
Matches are distributed among these distances:
77 3 0.01
78 6 0.02
79 3 0.01
80 11 0.04
81 4 0.02
82 35 0.13
83 3 0.01
84 31 0.12
85 5 0.02
86 13 0.05
87 19 0.07
88 114 0.43
89 10 0.04
90 8 0.03
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (85 bp):
AAACAGAATTAAAAACAGATTTTGAAAATACCTCGCACATGAGCCAAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTG
Found at i:122830598 original size:30 final size:30
Alignment explanation
Indices: 122830562--122830623 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
122830552 TTTTGAAAAA
122830562 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
122830592 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
122830622 CA
1 CA
122830624 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:122830742 original size:14 final size:14
Alignment explanation
Indices: 122830719--122830753 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
122830709 TGAGTTGATT
122830719 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
122830732 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
122830746 TTTGAAAA
1 TTTGAAAA
122830754 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:122830893 original size:170 final size:167
Alignment explanation
Indices: 122830605--122831682 Score: 1062
Period size: 170 Copynumber: 6.5 Consensus size: 167
122830595 AAATTAAAAA
*
122830605 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAAAAAAACAGAAATTGAAAATAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTG-----AAAAACAGAAATTGAAAATACC
** * * *
122830670 TCAGCACGTGAGC-CAAGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGA
60 TCAGCGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGA
* ** * * *
122830731 ATTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAG
124 AATTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAG
* * * *
122830775 GCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAAATACCTC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTG---AAAATACCTC
* *
122830840 AGTGTGTGATCTGAAGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTT--------GAAA-
62 AGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAAT
* * * *
122830896 -G----ACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAG
127 TGAAAAACAGAAATTGAAAATACCTCGGCGTGTGA-CCTGAG
* *
122830932 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTG-AAAACAGAAATTGAAAATACCTCAACG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCG
* * ** * *
122830996 TGT-CT-TGAGGCTCAACTCATTTCTCGTAATATGAGTTGA--ATTTTGAAA-ACAGAAATTGAA
66 TGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAA
** *
122831056 AAATGGAAATTGAAAATACCTCGGCGTGTGATCTGAG
131 AAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAG
* * *
122831093 GCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTGAAAAATATAAATTAAAGTAAAAAAAATA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATT---G-----AAAATA
*
122831157 CCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAG
58 CCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAG
* *
122831222 AAATTGAAAAA-TGAAAATTGAAAATACCTCGGCGTGTGATCTGAG
123 AAATTGAAAAACAG-AAATTGAAAATACCTCGGCGTGTGACCTGAG
* *
122831267 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAGC
* * * * *
122831332 GCGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTTGAAAGGCAGAAAT
65 GTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAGAAAT
122831396 TGAAAAAC-GAAAATTGAAAATACCTCGGCGTGTGACCTGAG
127 TGAAAAACAG-AAATTGAAAATACCTCGGCGTGTGACCTGAG
* * * * *
122831437 GCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTG-ACAACAGAAATTGAAATTACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAGC
* * *
122831501 GTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTG
65 GTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAATTG
* *
122831564 AAAAACGGAAATTGAAAATACCTCGGCGTGT--CTTGAG
129 AAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAG
* ** * * *
122831601 GCTCAACTAATTTCTCACAATATGAGTTGA-ATTTTG-AAAACAGAAATTGAAATTACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCG
* *
122831664 TGT-CT-TGAGGCTCAACTCA
66 TGTGATCTGAAGCTCAACTCA
122831683 TTTTGAACAG
Statistics
Matches: 771, Mismatches: 91, Indels: 100
0.80 0.09 0.10
Matches are distributed among these distances:
148 4 0.01
150 29 0.04
151 1 0.00
152 15 0.02
155 15 0.02
156 7 0.01
157 52 0.07
158 2 0.00
160 6 0.01
161 66 0.09
162 48 0.06
163 3 0.00
164 29 0.04
165 12 0.02
166 52 0.07
167 33 0.04
168 91 0.12
169 43 0.06
170 132 0.17
171 30 0.04
173 10 0.01
174 76 0.10
176 15 0.02
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (167 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCG
TGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAA
AAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAG
Found at i:122830960 original size:77 final size:77
Alignment explanation
Indices: 122830773--122831057 Score: 298
Period size: 77 Copynumber: 3.7 Consensus size: 77
122830763 ATGTGACCCG
* * * *
122830773 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTG---AAAATACC
* * * *
122830838 TCAGTGTGTGATCTGA
62 TCAGCGCGTGAGCTCA
* *
122830854 A-GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCA
122830918 GCGCGTGAGC-CA
65 GCGCGTGAGCTCA
*
122830930 AGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAG
* * **
122830993 -ACGTG-TCTTG
66 CGCGTGAGCTCA
** * *
122831003 AGGCTCAACTCATTTCTCGTAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAA
122831058 ATGGAAATTG
Statistics
Matches: 179, Mismatches: 22, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
72 23 0.13
73 32 0.18
75 20 0.11
76 12 0.07
77 45 0.25
79 3 0.02
80 43 0.24
81 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (77 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAG
CGCGTGAGCTCA
Found at i:122831190 original size:83 final size:84
Alignment explanation
Indices: 122831001--122831648 Score: 405
Period size: 91 Copynumber: 7.6 Consensus size: 84
122830991 CAACGTGTCT
** * *
122831001 TGAGGCTCAACTCATTTCTCGTAATATGAGTTGAATTTTG-AAAACAGAAATTGAAAAATGGAAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAACAGAAATT--AAAA-GTAAA
*
122831065 TTGAAAATACCTCGGCGTGTGATC
63 --AAAAATACCTCGGCGTGTGATC
* *
122831089 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAATATAAATT-AAAGTAAAAAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAACAGAAATTAAAAGTAAAAAA
* *
122831153 AATACCTCAGTGTGTGATC
66 AATACCTCGGCGTGTGATC
* * * *
122831172 TGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAAATGAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAAAACAGAAATT-AAAAGT-AA
122831237 AATTGAAAATACCTCGGCGTGTGATC
62 AA---AAAATACCTCGGCGTGTGATC
* *
122831263 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATT----G-----
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAAAACAGAAATTAAAAGTAAAA
* * * *
122831319 AAAATAGCTCAGCGCGTGAGC
64 AAAATACCTCGGCGTGTGATC
** * * **
122831340 CAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTTGAAAGGCAGAAATTGAAAAACG
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----ATTTTGAAAAACAGAAATT--AAAA-G
*
122831405 -AAAATTGAAAATACCTCGGCGTGTGACC
59 TAAAA---AAAATACCTCGGCGTGTGATC
* * * * *
122831433 TGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTG-ACAACAGAAATT----G-----
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAAAACAGAAATTAAAAGTAAAA
* * *
122831488 AAATTACCTCAGCGTGT--CC
64 AAAATACCTCGGCGTGTGATC
* ** *
122831507 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAACGG
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---ATTTTGAAAAACAGAAATT--AAAA-GT
* *
122831572 AAATTGAAAATACCTCGGCGTGT-CT-
60 AAA--AAAAATACCTCGGCGTGTGATC
* ** *
122831597 TGAGGCTCAACTAATTTCTCACAATATGAGTTGAATTTTG-AAAACAGAAATT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAACAGAAATT
122831649 GAAATTACCT
Statistics
Matches: 458, Mismatches: 60, Indels: 86
0.76 0.10 0.14
Matches are distributed among these distances:
74 33 0.07
75 7 0.02
76 24 0.05
77 48 0.10
79 20 0.04
83 54 0.12
85 19 0.04
86 14 0.03
87 9 0.02
88 41 0.09
89 10 0.02
90 54 0.12
91 80 0.17
93 45 0.10
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.28
Consensus pattern (84 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAACAGAAATTAAAAGTAAAAAA
AATACCTCGGCGTGTGATC
Found at i:122831273 original size:91 final size:89
Alignment explanation
Indices: 122830976--122831322 Score: 451
Period size: 91 Copynumber: 4.0 Consensus size: 89
122830966 TTGAAAACAG
* * ** *
122830976 AAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCGTAATATGAGTTGAATTT
1 AAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
*
122831039 TGAAA-ACAGAAATTGAAAAATGG
66 TGAAAGACAGAAATTGAAAAATGA
*
122831062 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
1 AAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
* * * *
122831127 TGAAAAATATAAATT--AAAGT-A
66 TGAAAGACAGAAATTGAAAAATGA
* * *
122831148 AAA---AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--AT
122831210 TTTGAAAGACAGAAATTGAAAAATGA
64 TTTGAAAGACAGAAATTGAAAAATGA
* *
122831236 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--AT
122831301 TTTGAAAGACAGAAATTGAAAA
64 TTTGAAAGACAGAAATTGAAAA
122831323 TAGCTCAGCG
Statistics
Matches: 229, Mismatches: 21, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
83 52 0.23
85 15 0.07
86 24 0.10
87 9 0.04
88 44 0.19
89 7 0.03
91 78 0.34
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
TGAAAGACAGAAATTGAAAAATGA
Found at i:122831352 original size:77 final size:78
Alignment explanation
Indices: 122831236--122831401 Score: 244
Period size: 77 Copynumber: 2.1 Consensus size: 78
122831226 TGAAAAATGA
* * * ** *
122831236 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
1 AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
122831300 TTTTGAAAGACAG
66 TTTTGAAAGACAG
*
122831313 AAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
1 AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTT
*
122831378 TTTTTGAAAGGCAG
65 TTTTTGAAAGACAG
122831392 AAATTGAAAA
1 AAATTGAAAA
122831402 ACGAAAATTG
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
77 54 0.68
79 25 0.32
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (78 bp):
AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
TTTTGAAAGACAG
Found at i:122831529 original size:74 final size:76
Alignment explanation
Indices: 122831406--122831567 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 76
122831396 TGAAAAACGA
* *
122831406 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGA-CTT
1 AAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATCTT
122831470 TTTTGACAA-CAG
65 TTTTGA-AAGCAG
* * * *
122831482 AAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATCTTT
122831546 TTTGAAAGGCAG
66 TTTGAAA-GCAG
122831558 AAATTGAAAA
1 AAATTGAAAA
122831568 ACGGAAATTG
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
74 35 0.46
75 8 0.11
76 33 0.43
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (76 bp):
AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATCTTT
TTTGAAAGCAG
Found at i:122831530 original size:335 final size:331
Alignment explanation
Indices: 122830901--122831663 Score: 918
Period size: 335 Copynumber: 2.3 Consensus size: 331
122830891 TGAAAGACAG
* * * * ** *
122830901 AAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTT
1 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * ** ** *
122830966 TTGAAAACAGAAATTGAAAATACCTCA--ACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATG
66 TTGAAAACAGAAATTGAAAATACCTCAGCGCGTGGCTCAAGGCTCAACTCACCTCTCGCAATATG
* * * *
122831029 AGTTGAATTTTGAAAACAGAAATTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGATCTGAGG
131 AGTCGAATTTTGAAAACAGAAATTGAAAAACGAAAATTGAAAATACCTCGGCGTGTGACCTGAGG
* * * *
122831094 CTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAATATAAATTAAAGTAAAAAAAATACC
196 CTCAACTCACCGCTCGCAATACGAGTTGAATTTTGAAAAACAGAAATT--AG----AAAAATACC
* *
122831159 TCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGA
255 TCAGCGTGT-ACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGA
*
122831223 AATTGAAAAATGA
319 AATTGAAAAACGA
122831236 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
*
122831301 TTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAAT
65 TTTGAAA-ACAGAAATTGAAAATACCTCAGCGCGTG-GCTCAAGGCTCAACTCACCTCTCGCAAT
* *
122831365 ATGAGTCGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTGAAAATACCTCGGCGTGTG
128 ATGAGTCGA----ATTTTGAAA-ACAGAAATTGAAAAACGAAAATTGAAAATACCTCGGCGTGTG
* * * *
122831430 ACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTG-ACAACAGAAATT-G-AAAT
188 ACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGA--ATTTTGAAAAACAGAAATTAGAAAAA
* *
122831492 TACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGC
251 TACCTCAGCGTGTACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGAC
*
122831556 AGAAATTGAAAAACGG
316 AGAAATTGAAAAACGA
* * ** * *
122831572 AAATTGAAAATACCTCGGCGTGT-CT-TGAGGCTCAACTAATTTCTCACAATATGAGTTGA-ATT
1 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
122831634 TTGAAAACAGAAATTGAAATTACCTCAGCG
66 TTGAAAACAGAAATTGAAAATACCTCAGCG
122831664 TGTCTTGAGG
Statistics
Matches: 372, Mismatches: 43, Indels: 30
0.84 0.10 0.07
Matches are distributed among these distances:
331 22 0.06
332 8 0.02
334 30 0.08
335 89 0.24
336 60 0.16
337 35 0.09
339 32 0.09
340 1 0.00
342 1 0.00
343 8 0.02
344 72 0.19
345 9 0.02
346 5 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (331 bp):
AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTGAAAACAGAAATTGAAAATACCTCAGCGCGTGGCTCAAGGCTCAACTCACCTCTCGCAATATG
AGTCGAATTTTGAAAACAGAAATTGAAAAACGAAAATTGAAAATACCTCGGCGTGTGACCTGAGG
CTCAACTCACCGCTCGCAATACGAGTTGAATTTTGAAAAACAGAAATTAGAAAAATACCTCAGCG
TGTACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAA
AAACGA
Found at i:122831705 original size:49 final size:49
Alignment explanation
Indices: 122831639--122831734 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
122831629 GAATTTTGAA
*
122831639 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
122831688 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
122831735 CTCGCAATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:122831768 original size:72 final size:72
Alignment explanation
Indices: 122831688--122832032 Score: 519
Period size: 72 Copynumber: 4.7 Consensus size: 72
122831678 ACTCATTTTG
* *
122831688 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
122831753 TTTTGAA
66 TTTTGAA
* *
122831760 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
122831825 TTTTGTTTTTGAA
66 ------TTTTGAA
* *
122831838 AGACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA
1 A-ACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
*
122831903 TTTTTTTGAAA
65 --ATTTTG-AA
* *
122831914 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
122831979 TTTTGAA
66 TTTTGAA
122831986 AACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTT
122832033 TGAACAGAAA
Statistics
Matches: 253, Mismatches: 10, Indels: 20
0.89 0.04 0.07
Matches are distributed among these distances:
72 112 0.44
73 5 0.02
75 66 0.26
76 3 0.01
78 8 0.03
79 59 0.23
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:122831787 original size:121 final size:121
Alignment explanation
Indices: 122831571--122831806 Score: 418
Period size: 121 Copynumber: 2.0 Consensus size: 121
122831561 TTGAAAAACG
**
122831571 GAAATTGAAAATACCTCGGCGTGTCTTGAGGCTCAACTAATTTCTCACAATATGAGTTGAATTTT
1 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTAATTTCTCACAATATGAGTTGAATTTT
*
122831636 GAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTGAACA
66 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTGAACA
* * *
122831692 GAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
1 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTAATTTCTCACAATATGAGTTGAATTTT
122831757 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
66 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
122831807 CTCGCAATAT
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 109 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (121 bp):
GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTAATTTCTCACAATATGAGTTGAATTTT
GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTGAACA
Found at i:122831974 original size:154 final size:144
Alignment explanation
Indices: 122831688--122832032 Score: 519
Period size: 154 Copynumber: 2.3 Consensus size: 144
122831678 ACTCATTTTG
* * *
122831688 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAA
* * *
122831753 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
66 TTTTGAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATG
122831818 AGTTGAATTTTGTTTTTGAA
131 AGTTGAA------TTTTGAA
*
122831838 AGACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA
1 A-ACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA
* *
122831903 TTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAA
65 --ATTTTG-AAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAA
122831968 TATGAGTTGAATTTTGAA
127 TATGAGTTGAATTTTGAA
122831986 AACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTT
122832033 TGAACAGAAA
Statistics
Matches: 181, Mismatches: 10, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
147 45 0.25
148 8 0.04
150 1 0.01
151 59 0.33
153 5 0.03
154 63 0.35
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (144 bp):
AACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATG
AGTTGAATTTTGAA
Found at i:122832052 original size:49 final size:49
Alignment explanation
Indices: 122831986--122832081 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
122831976 GAATTTTGAA
*
122831986 AACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTTG
*
122832035 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTT
122832082 CTCGCAATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTTG
Found at i:122832067 original size:121 final size:121
Alignment explanation
Indices: 122831914--122832153 Score: 417
Period size: 121 Copynumber: 2.0 Consensus size: 121
122831904 TTTTTTGAAA
*
122831914 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
* *
122831979 TTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTTG
66 TTTTGAAAACAAAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTTG
* * *
122832035 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
*
122832100 TTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
66 TTTTGAAAACAAAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTT
122832154 CTCGCAATAT
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 112 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.31
Consensus pattern (121 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
TTTTGAAAACAAAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTTG
Found at i:122832144 original size:72 final size:72
Alignment explanation
Indices: 122832035--122832175 Score: 264
Period size: 72 Copynumber: 2.0 Consensus size: 72
122832025 ACTCATTTTG
* *
122832035 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTAAA
122832100 TTTTGAA
66 TTTTGAA
122832107 AACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTAAA
1 AACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTAAA
122832172 TTTT
66 TTTT
122832176 TTTTTTGAAA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (72 bp):
AACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTAAA
TTTTGAA
Found at i:122832196 original size:347 final size:347
Alignment explanation
Indices: 122831561--122832213 Score: 1225
Period size: 347 Copynumber: 1.9 Consensus size: 347
122831551 AAGGCAGAAA
* * *
122831561 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTCTTGAGGCTCAACTAATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCACAATATGA
*
122831626 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTGAAC
66 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTTGAAC
122831691 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
131 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
*
122831756 TGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
196 TGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
*
122831821 TGAATTTTGTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
261 TAAATTTTGTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
122831886 CTCACAATATGAGTTGATTTTT
326 CTCACAATATGAGTTGATTTTT
*
122831908 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCACAATATGA
122831973 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTTGAAC
66 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTTGAAC
122832038 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
131 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
122832103 TGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
196 TGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
* *
122832168 TAAATTTTTTTTTTGAAAGACGGAAATTGAAAATACCTCAGCATGT
261 TAAATTTTGTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGT
122832214 GAACCGAGGC
Statistics
Matches: 297, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
347 297 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (347 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCACAATATGA
GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCATTTTGAAC
AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
TGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
TAAATTTTGTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
CTCACAATATGAGTTGATTTTT
Found at i:122832336 original size:13 final size:13
Alignment explanation
Indices: 122832309--122832342 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
122832299 GAGTTGATTC
*
122832309 TTGAACAACATAAA
1 TTGAA-AACAGAAA
122832323 TTGAAAACAGAAA
1 TTGAAAACAGAAA
122832336 TTGAAAA
1 TTGAAAA
122832343 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:122832390 original size:140 final size:140
Alignment explanation
Indices: 122832180--122832934 Score: 1286
Period size: 140 Copynumber: 5.5 Consensus size: 140
122832170 AATTTTTTTT
* *
122832180 TTGAAAGACGGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTTAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
*
122832244 TGAGCTGATTTTGAAAAAGTACAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
122832309 TTGAACAACATAAA
127 TTGAACAACGTAAA
122832323 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
122832388 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
122832453 ACAACGTAAA
131 ACAACGTAAA
122832463 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
122832528 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
122832593 ACAACG----
131 ACAACGTAAA
* * *
122832599 -T--------AAATTGAAAATACCTTAGCGTGACCTGAGGCTTAACTCACCTCTCGCAATATAAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
122832655 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTTTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
122832720 ACAACGTAAA
131 ACAACGTAAA
122832730 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
122832795 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
122832860 ACAACGTAAA
131 ACAACGTAAA
122832870 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
122832935 TTGAAATTAA
Statistics
Matches: 584, Mismatches: 14, Indels: 31
0.93 0.02 0.05
Matches are distributed among these distances:
127 121 0.21
132 1 0.00
135 1 0.00
139 3 0.01
140 430 0.74
142 22 0.04
143 6 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.26
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:122832464 original size:54 final size:54
Alignment explanation
Indices: 122832364--122832469 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
122832354 GACCTGAGGC
*
122832364 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
122832418 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
122832470 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:122832604 original size:54 final size:54
Alignment explanation
Indices: 122832504--122832609 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
122832494 GACCTGAGGC
*
122832504 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
122832558 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
122832610 TACCTTAGCG
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:122832643 original size:127 final size:127
Alignment explanation
Indices: 122832473--122832876 Score: 639
Period size: 127 Copynumber: 3.1 Consensus size: 127
122832463 TTGAAAACAG
122832473 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGA
122832538 AAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT
66 AAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT
* * *
122832600 AAATTGAAAATACCTTAGCGTGACCTGAGGCTTAACTCACCTCTCGCAATATAAGCTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGA
122832665 AAAAGTAGAAATTAAAAGGTTCAACCCACCTT-TCGCAATATGAGTTGATTCTTGAACAACGTAA
66 AAAAGTAGAAATTAAAAGGTTCAACCCA-CTTCTCGCAATATGAGTTGATTCTTGAACAACG---
122832729 ATT
127 --T
122832732 GAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
1 --------AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
*
122832797 GATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAAC
58 GATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAAC
122832862 AACGT
123 AACGT
122832867 AAATTGAAAA
1 AAATTGAAAA
122832877 CAGAAATTGA
Statistics
Matches: 255, Mismatches: 7, Indels: 30
0.87 0.02 0.10
Matches are distributed among these distances:
127 129 0.51
128 3 0.01
132 1 0.00
135 1 0.00
139 2 0.01
140 119 0.47
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (127 bp):
AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGA
AAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT
Found at i:122832679 original size:407 final size:408
Alignment explanation
Indices: 122832191--122832934 Score: 1402
Period size: 407 Copynumber: 1.8 Consensus size: 408
122832181 TGAAAGACGG
*
122832191 AAATTGAAAATACCTCAGCATGTGAACCGAGGCTTAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAGCA-GTGAACCGAGGCTTAACTCACCTCTCGCAATATAAGCTGATTTT
122832256 GAAAAAGTACAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATA
65 GAAAAAGTACAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATA
122832321 AATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
130 AATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
*
122832386 AGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTT
195 AGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTT
122832451 GAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTC
260 GAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTC
122832516 TCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGA
325 TCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGA
122832581 GTTGATTCTTGAACAACGT
390 GTTGATTCTTGAACAACGT
*
122832600 AAATTGAAAATACCTTAGC-GTG-ACCTGAGGCTTAACTCACCTCTCGCAATATAAGCTGATTTT
1 AAATTGAAAATACCTCAGCAGTGAACC-GAGGCTTAACTCACCTCTCGCAATATAAGCTGATTTT
* * *
122832663 GAAAAAGTAGAAATTAAAAGGTTCAACCCACCTTTCGCAATATGAGTTGATTCTTGAACAACGTA
65 GAAAAAGTACAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATA
122832728 AATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
130 AATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
122832793 AGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTT
195 AGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTT
122832858 GAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTC
260 GAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTC
122832923 TCGCAATATGAG
325 TCGCAATATGAG
122832935 TTGAAATTAA
Statistics
Matches: 328, Mismatches: 6, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
406 3 0.01
407 307 0.94
409 18 0.05
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.26
Consensus pattern (408 bp):
AAATTGAAAATACCTCAGCAGTGAACCGAGGCTTAACTCACCTCTCGCAATATAAGCTGATTTTG
AAAAAGTACAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAA
ATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
AACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCT
CGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAG
TTGATTCTTGAACAACGT
Found at i:122832808 original size:267 final size:267
Alignment explanation
Indices: 122832333--122832876 Score: 1036
Period size: 267 Copynumber: 2.0 Consensus size: 267
122832323 TTGAAAACAG
*
122832333 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATAAGCTGATTTTGA
122832398 AAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
66 AAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
122832463 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
131 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
122832528 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
196 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
122832593 ACAACGT
261 ACAACGT
* *
122832600 AAATTGAAAATACCTTAGCGTGACCTGAGGCTTAACTCACCTCTCGCAATATAAGCTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATAAGCTGATTTTGA
122832665 AAAAGTAGAAATTAAAAGGTTCAACCCACCTT-TCGCAATATGAGTTGATTCTTGAACAACGTAA
66 AAAAGTAGAAATTAAAAGGTTCAACCCA-CTTCTCGCAATATGAGTTGATTCTTGAACAACGTAA
122832729 ATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
130 ATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
122832794 GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
195 GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
122832859 AACAACGT
260 AACAACGT
122832867 AAATTGAAAA
1 AAATTGAAAA
122832877 CAGAAATTGA
Statistics
Matches: 272, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
267 269 0.99
268 3 0.01
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (267 bp):
AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATAAGCTGATTTTGA
AAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGT
Found at i:122832871 original size:54 final size:54
Alignment explanation
Indices: 122832771--122832876 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
122832761 GACCTGAGGC
*
122832771 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
122832825 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
122832877 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Done.