Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 430 of 444
Found at i:124360675 original size:30 final size:30
Alignment explanation
Indices: 124360565--124360677 Score: 110
Period size: 30 Copynumber: 3.8 Consensus size: 30
124360555 ATTCAAAATA
** *
124360565 AATAA-TTTTATAATTTTTTCCTATATTTCT
1 AATAATTTTTATAATTTTTTATTAAATTT-T
124360595 -AT-ATATTTTATAATTTTTT-TCTAAATTTT
1 AATAAT-TTTTATAATTTTTTAT-TAAATTTT
*
124360624 AATAATTTTT-TAGATTATTTATTAAATTTT
1 AATAATTTTTATA-ATTTTTTATTAAATTTT
*
124360654 AATAATTTTTATTATTTTTTATTA
1 AATAATTTTTATAATTTTTTATTA
124360678 TTTTTTTGTC
Statistics
Matches: 70, Mismatches: 5, Indels: 16
0.77 0.05 0.18
Matches are distributed among these distances:
28 1 0.01
29 5 0.07
30 60 0.86
31 4 0.06
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.63
Consensus pattern (30 bp):
AATAATTTTTATAATTTTTTATTAAATTTT
Found at i:124366608 original size:46 final size:46
Alignment explanation
Indices: 124366556--124366726 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
124366546 TGGTTGAGCA
124366556 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
124366602 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
124366647 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
124366695 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
124366727 ACAAAAATTC
Statistics
Matches: 105, Mismatches: 11, Indels: 18
0.78 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:124366712 original size:93 final size:93
Alignment explanation
Indices: 124366553--124366723 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
124366543 GGATGGTTGA
* **
124366553 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
124366618 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
124366646 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
124366711 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
124366724 ACTACAAAAA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:124367664 original size:36 final size:36
Alignment explanation
Indices: 124367617--124367689 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
124367607 CCTCAACGTG
*
124367617 ATTAGCCTCTCTACCTCCAAAGGGAAGCCTTGATGC
1 ATTAGCCTCTCTACCTCCAAAAGGAAGCCTTGATGC
124367653 ATTAGCCTCTCTACCTCCAAAAGGAAGCCTTGATGC
1 ATTAGCCTCTCTACCTCCAAAAGGAAGCCTTGATGC
124367689 A
1 A
124367690 CTTGTTCGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (36 bp):
ATTAGCCTCTCTACCTCCAAAAGGAAGCCTTGATGC
Found at i:124374568 original size:35 final size:34
Alignment explanation
Indices: 124374527--124374666 Score: 104
Period size: 35 Copynumber: 4.0 Consensus size: 34
124374517 CATAGGTAAG
124374527 TACATGTAAGCTTATATTGAACTTGTATATTCGGC
1 TACATGTAAGCTTATATTGAA-TTGTATATTCGGC
* * * * **
124374562 TGCATGTGAGGTTATATTGAATTTTAGTATTCGAT
1 TACATGTAAGCTTATATTGAATTGTA-TATTCGGC
* *
124374597 TACATGTGAA-CTTATATTGAAATTGTATACTCGGA
1 TACATGT-AAGCTTATATTG-AATTGTATATTCGGC
* * * *
124374632 TATATGTGAAG-TTATCTTAAATATGCATATTCGGC
1 TACATGT-AAGCTTATATTGAAT-TGTATATTCGGC
124374667 CATATGTGAT
Statistics
Matches: 81, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
34 7 0.09
35 67 0.83
36 7 0.09
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.41
Consensus pattern (34 bp):
TACATGTAAGCTTATATTGAATTGTATATTCGGC
Found at i:124374663 original size:70 final size:70
Alignment explanation
Indices: 124374527--124374664 Score: 154
Period size: 70 Copynumber: 2.0 Consensus size: 70
124374517 CATAGGTAAG
* * * * * * **
124374527 TACATGTAAGCTTATATTGAACTTGTATATTCGGCTGCATGTGAGGTTATATTGAATTTTAGTAT
1 TACATGTAAGCTTATATTGAAATTGTATACTCGGATACATGTGAAGTTATATTAAATTGCAGTAT
124374592 TCGAT
66 TCGAT
* *
124374597 TACATGTGAA-CTTATATTGAAATTGTATACTCGGATATATGTGAAGTTATCTTAAATATGCA-T
1 TACATGT-AAGCTTATATTGAAATTGTATACTCGGATACATGTGAAGTTATATTAAAT-TGCAGT
124374660 ATTCG
64 ATTCG
124374665 GCCATATGTG
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
70 52 0.93
71 4 0.07
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.41
Consensus pattern (70 bp):
TACATGTAAGCTTATATTGAAATTGTATACTCGGATACATGTGAAGTTATATTAAATTGCAGTAT
TCGAT
Found at i:124376510 original size:23 final size:23
Alignment explanation
Indices: 124376428--124376514 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
124376418 CCTGATCAGT
*
124376428 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
124376450 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
124376470 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
124376493 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
124376515 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:124376910 original size:15 final size:15
Alignment explanation
Indices: 124376885--124376942 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
124376875 TCATGTATAT
124376885 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
124376901 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
124376916 AATAATTTCAATCAA
1 TATAAATTCAATCAA
124376931 TATAAATTCAAT
1 TATAAATTCAAT
124376943 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:124379161 original size:46 final size:46
Alignment explanation
Indices: 124378908--124379161 Score: 384
Period size: 46 Copynumber: 5.5 Consensus size: 46
124378898 TCTTTCTGCT
*
124378908 ATGGTCTTACTCATTTTC-TATCATGTTGCCATGGTATCTTTCAACC
1 ATGGTCTTACTCA-TTTCATATCAGGTTGCCATGGTATCTTTCAACC
* * * * *
124378954 ATAGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACC
1 ATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATCTTTCAACC
* **
124379000 ATGGTCTTATTCATTTCATATCACATTGCCATGGTATCTTTCAACC
1 ATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATCTTTCAACC
*
124379046 ATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACC
1 ATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATCTTTCAACC
*
124379092 ATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACC
1 ATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATCTTTCAACC
*
124379138 ATGGTCTTACACATTTCATATCAG
1 ATGGTCTTACTCATTTCATATCAG
124379162 AGAGCACACT
Statistics
Matches: 194, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 190 0.98
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.41
Consensus pattern (46 bp):
ATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATCTTTCAACC
Found at i:124381309 original size:11 final size:11
Alignment explanation
Indices: 124381293--124381340 Score: 60
Period size: 11 Copynumber: 4.2 Consensus size: 11
124381283 CTTTATATAC
124381293 TAATAAAATAA
1 TAATAAAATAA
124381304 TAATAAAATATA
1 TAATAAAATA-A
* *
124381316 TTATTAAAATAT
1 -TAATAAAATAA
124381328 TAATAAAATAA
1 TAATAAAATAA
124381339 TA
1 TA
124381341 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 21 0.68
12 1 0.03
13 9 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:124381323 original size:24 final size:24
Alignment explanation
Indices: 124381287--124381342 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
124381277 TTCTTTCTTT
*
124381287 ATATACTAATAAAATAATAATAAA
1 ATATATTAATAAAATAATAATAAA
* *
124381311 ATATATTATTAAAATATTAATAAA
1 ATATATTAATAAAATAATAATAAA
124381335 ATAATATT
1 AT-ATATT
124381343 TATCTAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
ATATATTAATAAAATAATAATAAA
Found at i:124387610 original size:35 final size:34
Alignment explanation
Indices: 124387560--124387679 Score: 100
Period size: 35 Copynumber: 3.4 Consensus size: 34
124387550 CATAGGTAAG
*
124387560 TACATGT-AAGCTTATATTGAACTTGTATATTCGGC
1 TACATGTGAA-CTTATATTGAA-TTGTATATTCGGA
** * *
124387595 TACATGTGAGGTTATATTGAATTTTAGTATT-TGA
1 TACATGTGAACTTATATTGAATTGTA-TATTCGGA
* *
124387629 TTACTTGTGAACTTATATTGAAATTGTATACTCGGA
1 -TACATGTGAACTTATATTG-AATTGTATATTCGGA
* *
124387665 TATATGTGAAGTTAT
1 TACATGTGAACTTAT
124387680 CTTAAATATT
Statistics
Matches: 66, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
34 5 0.08
35 52 0.79
36 9 0.14
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.43
Consensus pattern (34 bp):
TACATGTGAACTTATATTGAATTGTATATTCGGA
Found at i:124394515 original size:21 final size:21
Alignment explanation
Indices: 124394491--124394572 Score: 110
Period size: 21 Copynumber: 3.8 Consensus size: 21
124394481 GACACATAAA
* *
124394491 GTGCCTAAAATGACACACGAG
1 GTGCCTGAAACGACACACGAG
*
124394512 GTGCCTGATACGACACACGAG
1 GTGCCTGAAACGACACACGAG
*
124394533 GTGCCTGATACGACACACGAG
1 GTGCCTGAAACGACACACGAG
124394554 GTGCCTGAAATACGACACA
1 GTGCCTG-AA-ACGACACA
124394573 TAAAGTGCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
21 46 0.84
22 1 0.02
23 8 0.15
ACGTcount: A:0.33, C:0.27, G:0.26, T:0.15
Consensus pattern (21 bp):
GTGCCTGAAACGACACACGAG
Found at i:124394528 original size:42 final size:43
Alignment explanation
Indices: 124394477--124394582 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 43
124394467 CCTGATCAGT
*
124394477 ATACGACACATAAAGTGCCTAAAATGACACACGAGGTGCCTG-
1 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTGA
** * * *
124394519 ATACGACACACGAGGTGCCTGATACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTG-A
124394563 ATACGACACATAAAGTGCCT
1 ATACGACACATAAAGTGCCT
124394583 GATCGATAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 36 0.68
44 17 0.32
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (43 bp):
ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTGA
Found at i:124394529 original size:23 final size:21
Alignment explanation
Indices: 124394502--124394572 Score: 124
Period size: 21 Copynumber: 3.3 Consensus size: 21
124394492 TGCCTAAAAT
124394502 GACACACGAGGTGCCTGATAC
1 GACACACGAGGTGCCTGATAC
124394523 GACACACGAGGTGCCTGATAC
1 GACACACGAGGTGCCTGATAC
124394544 GACACACGAGGTGCCTGAAATAC
1 GACACACGAGGTGCCTG--ATAC
124394567 GACACA
1 GACACA
124394573 TAAAGTGCCT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
21 38 0.79
23 10 0.21
ACGTcount: A:0.32, C:0.28, G:0.27, T:0.13
Consensus pattern (21 bp):
GACACACGAGGTGCCTGATAC
Found at i:124394981 original size:15 final size:15
Alignment explanation
Indices: 124394956--124395013 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
124394946 TCATATATAT
124394956 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
124394972 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
124394987 AATAATTTCAATCAA
1 TATAAATTCAATCAA
124395002 TATAAATTCAAT
1 TATAAATTCAAT
124395014 AAATTCATCA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:124396299 original size:5 final size:5
Alignment explanation
Indices: 124396289--124396341 Score: 52
Period size: 5 Copynumber: 10.0 Consensus size: 5
124396279 TTACTTATTT
* * *
124396289 ATATA ATATAA TATATA ATATA ATATA CTAGA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
124396337 ATATA
1 ATATA
124396342 TTTTAACACA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
5 28 0.72
6 7 0.18
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:124396305 original size:12 final size:12
Alignment explanation
Indices: 124396288--124396342 Score: 67
Period size: 12 Copynumber: 4.4 Consensus size: 12
124396278 TTTACTTATT
124396288 TATATAATATAA
1 TATATAATATAA
124396300 TATATAATATAA
1 TATATAATATAA
124396312 TATACTAGAATATAA
1 TATA-T--AATATAA
*
124396327 TA-ATAATTTAA
1 TATATAATATAA
124396338 TATAT
1 TATAT
124396343 TTTAACACAT
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 8 0.21
12 18 0.47
13 2 0.05
14 1 0.03
15 9 0.24
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (12 bp):
TATATAATATAA
Found at i:124412923 original size:48 final size:48
Alignment explanation
Indices: 124412853--124412948 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
124412843 AACATTTATC
124412853 TCTGTCGTAATCTTAGCAAATTAGATAATTAGTCTTAGTTTAAAACAT
1 TCTGTCGTAATCTTAGCAAATTAGATAATTAGTCTTAGTTTAAAACAT
*
124412901 TCTGTCGTAATCTTAGCCAATTAGATAATTAGTCTTAGTTTAAAACAT
1 TCTGTCGTAATCTTAGCAAATTAGATAATTAGTCTTAGTTTAAAACAT
124412949 CCATTAATTC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (48 bp):
TCTGTCGTAATCTTAGCAAATTAGATAATTAGTCTTAGTTTAAAACAT
Found at i:124412970 original size:43 final size:45
Alignment explanation
Indices: 124412860--124412972 Score: 115
Period size: 48 Copynumber: 2.4 Consensus size: 45
124412850 ATCTCTGTCG
* **
124412860 TAATCTTAGCAAATTAGATAATTAGTCTTAGTTTAAAACATTCTGTC
1 TAATCTTAGC-CA-TAGATAATTAGTCTTAGTTTAAAACATTCCATC
124412907 GTAATCTTAGCCAATTAGATAATTAGTCTTAGTTTAAAACA-TCCAT-
1 -TAATCTTAGCC-A-TAGATAATTAGTCTTAGTTTAAAACATTCCATC
*
124412953 TAATTCTTAGGC-TAGATAAT
1 TAA-TCTTAGCCATAGATAAT
124412973 AAAAAAGATA
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
43 8 0.14
45 3 0.05
46 7 0.12
47 3 0.05
48 38 0.64
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (45 bp):
TAATCTTAGCCATAGATAATTAGTCTTAGTTTAAAACATTCCATC
Found at i:124415577 original size:15 final size:15
Alignment explanation
Indices: 124415557--124415586 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
124415547 CCATTGAAGG
124415557 GGTTAAGATAGAATT
1 GGTTAAGATAGAATT
124415572 GGTTAAGATAGAATT
1 GGTTAAGATAGAATT
124415587 TAATAATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.27, T:0.33
Consensus pattern (15 bp):
GGTTAAGATAGAATT
Found at i:124416698 original size:11 final size:11
Alignment explanation
Indices: 124416682--124416706 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
124416672 TTATTTATAG
124416682 TATATAAATGA
1 TATATAAATGA
124416693 TATATAAATGA
1 TATATAAATGA
124416704 TAT
1 TAT
124416707 GTAGATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (11 bp):
TATATAAATGA
Found at i:124417799 original size:31 final size:31
Alignment explanation
Indices: 124417740--124417802 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
124417730 ACTTAACAAC
*** *
124417740 TCAATGACTTAAATAATTTTTTTTAAATAGT
1 TCAATGACTTAAATAAAAATTTTCAAATAGT
*
124417771 TCAATGATTTAAATAAAAATTTTCAAATAGT
1 TCAATGACTTAAATAAAAATTTTCAAATAGT
124417802 T
1 T
124417803 GAGTGATCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.44
Consensus pattern (31 bp):
TCAATGACTTAAATAAAAATTTTCAAATAGT
Found at i:124435405 original size:31 final size:31
Alignment explanation
Indices: 124435370--124435446 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
124435360 TATTGTCTAA
*
124435370 ATTAACTCTTAAACTT-AATAATTATTTTTAT
1 ATTAA-TCTTAAACTTAAATAATTATTTTCAT
124435401 ATTAAAAT-TTAAA-TTAAATAATTATTTTCAT
1 ATT--AATCTTAAACTTAAATAATTATTTTCAT
* *
124435432 GTTAAGCTTAAACTT
1 ATTAATCTTAAACTT
124435447 TTTTTTTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
29 2 0.05
30 7 0.18
31 26 0.68
32 1 0.03
33 2 0.05
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.48
Consensus pattern (31 bp):
ATTAATCTTAAACTTAAATAATTATTTTCAT
Found at i:124443509 original size:16 final size:16
Alignment explanation
Indices: 124443478--124443507 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
124443468 TTTTATTTTA
124443478 ACTTTATCTTTTAAAT
1 ACTTTATCTTTTAAAT
124443494 ACTTTAT-TTTTAAA
1 ACTTTATCTTTTAAA
124443508 ATTATATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (16 bp):
ACTTTATCTTTTAAAT
Found at i:124444297 original size:17 final size:17
Alignment explanation
Indices: 124444275--124444308 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
124444265 TCTAGTAAGC
124444275 TAATAAAAATAATTAAA
1 TAATAAAAATAATTAAA
* *
124444292 TAATAAATATGATTAAA
1 TAATAAAAATAATTAAA
124444309 GAGATTCAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATAAAAATAATTAAA
Found at i:124444764 original size:30 final size:30
Alignment explanation
Indices: 124444728--124444790 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
124444718 ACTTATTTTA
124444728 TTGTTAATTTTATTATTATTTTAAAGGAAT
1 TTGTTAATTTTATTATTATTTTAAAGGAAT
* *
124444758 TTGTTAATTTTATTATTATTTTAGAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGGAAT
124444788 TTG
1 TTG
124444791 CTTGTTGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.29, C:0.02, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGGAAT
Found at i:124445717 original size:17 final size:18
Alignment explanation
Indices: 124445674--124445719 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
124445664 TCAAGGTAAA
124445674 ATCCTTTTTTGCTATTGT
1 ATCCTTTTTTGCTATTGT
124445692 ATCCTTTTTTGCTATTGT
1 ATCCTTTTTTGCTATTGT
*
124445710 GTCCTTTTTT
1 ATCCTTTTTT
124445720 ATTTTATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.09, C:0.17, G:0.11, T:0.63
Consensus pattern (18 bp):
ATCCTTTTTTGCTATTGT
Found at i:124448903 original size:21 final size:21
Alignment explanation
Indices: 124448879--124448943 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
124448869 ATTAAAAAAA
124448879 TATTTTTATGATTTAAGACAC
1 TATTTTTATGATTTAAGACAC
* * *
124448900 TATTATTT-T-ATATTAAAAAAA
1 TATT-TTTATGAT-TTAAGACAC
*
124448921 TATTTTTATGATTTAGGACAC
1 TATTTTTATGATTTAAGACAC
124448942 TA
1 TA
124448944 GATGGCCAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 8
0.69 0.15 0.17
Matches are distributed among these distances:
20 5 0.15
21 23 0.70
22 5 0.15
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.48
Consensus pattern (21 bp):
TATTTTTATGATTTAAGACAC
Found at i:124448923 original size:42 final size:43
Alignment explanation
Indices: 124448858--124448943 Score: 147
Period size: 42 Copynumber: 2.0 Consensus size: 43
124448848 GGCCGGTATC
*
124448858 ATTATTTTTTTATTAAAAAAATATTTTTATGATTTAAGACACT
1 ATTATTTTTATATTAAAAAAATATTTTTATGATTTAAGACACT
*
124448901 ATTA-TTTTATATTAAAAAAATATTTTTATGATTTAGGACACT
1 ATTATTTTTATATTAAAAAAATATTTTTATGATTTAAGACACT
124448943 A
1 A
124448944 GATGGCCAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 37 0.90
43 4 0.10
ACGTcount: A:0.41, C:0.05, G:0.06, T:0.49
Consensus pattern (43 bp):
ATTATTTTTATATTAAAAAAATATTTTTATGATTTAAGACACT
Found at i:124450664 original size:19 final size:19
Alignment explanation
Indices: 124450640--124450690 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
124450630 ATTAAAGGGT
*
124450640 TTTATCATATATTATTTAA
1 TTTATCATATATTATATAA
*
124450659 TTTATCATACATTATATAA
1 TTTATCATATATTATATAA
*
124450678 TGTATACATATAT
1 TTTAT-CATATAT
124450691 CTACTTAGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 21 0.78
20 6 0.22
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (19 bp):
TTTATCATATATTATATAA
Found at i:124451797 original size:131 final size:130
Alignment explanation
Indices: 124451578--124451823 Score: 404
Period size: 131 Copynumber: 1.9 Consensus size: 130
124451568 AAAATTCACT
* *
124451578 AAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGAATCGTGCTCTATCGTGCTGGATTGCGAT
1 AAAACGAAGGTAATACTCGATGTTTGACAATTCGGGAATCGTGCCCTATCGTGCTGGATTGCGAT
*
124451643 TTCCCGTTTGTTCAAAACAATCGAATATTCCTTTGGAATTTCACTCATGTCTTTAAAAACTCCTC
66 TTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCCTC
* *
124451708 AAAACGAAGGTAATACTCGATTTTTGACAATTCGGGGAATCGTGCCCTATCGTGCTAGG-TTGTG
1 AAAACGAAGGTAATACTCGATGTTTGACAATTC-GGGAATCGTGCCCTATCGTGCT-GGATTGCG
* *
124451772 ATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
64 ATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGAATTTCACTCATGT
124451824 TCTCTAAATT
Statistics
Matches: 107, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
130 31 0.29
131 74 0.69
132 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (130 bp):
AAAACGAAGGTAATACTCGATGTTTGACAATTCGGGAATCGTGCCCTATCGTGCTGGATTGCGAT
TTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCCTC
Found at i:124462875 original size:122 final size:120
Alignment explanation
Indices: 124462657--124462877 Score: 361
Period size: 122 Copynumber: 1.8 Consensus size: 120
124462647 AAAATAGGCA
*
124462657 CAATGCTCATTTGTTCTTACTGCCATATATATATTATCCCATCTCAAAAGAGTACACATGATGAC
1 CAATGCTCATTTGTTCTGACTGCCATATATATATTATCCCATCTCAAAAGAGTACACATGATGAC
* *
124462722 GACATCCAAAACATCAACCTCGAACAGTTGTACTAAAGTAAAACAATTCTCATGT
66 AACATCCAAAACATCAACCTCGAACAATTGTACTAAAGTAAAACAATTCTCATGT
* * *
124462777 CAATGCTCATTTTTTCTGACTGCCGTATATATGGATTATCCCATCTCAAAAGAGTACACATGTTG
1 CAATGCTCATTTGTTCTGACTGCCATATATAT--ATTATCCCATCTCAAAAGAGTACACATGATG
*
124462842 ACAACATCCAAAACATCACCCTCGAACAATTGTACT
64 ACAACATCCAAAACATCAACCTCGAACAATTGTACT
124462878 CTAAACATCA
Statistics
Matches: 92, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
120 29 0.32
122 63 0.68
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.29
Consensus pattern (120 bp):
CAATGCTCATTTGTTCTGACTGCCATATATATATTATCCCATCTCAAAAGAGTACACATGATGAC
AACATCCAAAACATCAACCTCGAACAATTGTACTAAAGTAAAACAATTCTCATGT
Found at i:124467912 original size:24 final size:24
Alignment explanation
Indices: 124467863--124467913 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
124467853 GTAGAAATTT
* *
124467863 TAATTTTAGATCTTTTCCATAGAA
1 TAATTTTAGATCTTTTCAAAAGAA
*
124467887 TAATTTTAGAT-TTTTTAAAAGTAA
1 TAATTTTAGATCTTTTCAAAAG-AA
124467911 TAA
1 TAA
124467914 ACTGTCGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (24 bp):
TAATTTTAGATCTTTTCAAAAGAA
Found at i:124469362 original size:21 final size:22
Alignment explanation
Indices: 124469322--124469363 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
124469312 CAAAATATAT
*
124469322 ATATTTATTTAATATATAAATG
1 ATATTTATTAAATATATAAATG
*
124469344 ATATTT-TTAAATATTTAAAT
1 ATATTTATTAAATATATAAAT
124469364 AATTTAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
ATATTTATTAAATATATAAATG
Found at i:124470120 original size:46 final size:45
Alignment explanation
Indices: 124470060--124470225 Score: 211
Period size: 46 Copynumber: 3.8 Consensus size: 45
124470050 TTTGACATGA
* * * * *
124470060 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCT-TCAGGT
*
124470106 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCT-TCAGGT
124470152 TGCCATGGTATCTTTCAACCATGGTCTT--ACA----C-TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTTCAGGT
124470190 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
124470226 CATATCAGAG
Statistics
Matches: 107, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
38 34 0.32
40 3 0.03
44 3 0.03
46 67 0.63
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTTCAGGT
Found at i:124470197 original size:38 final size:38
Alignment explanation
Indices: 124470146--124470221 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
124470136 ACATTTTATA
124470146 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
124470184 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
124470222 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:124472375 original size:11 final size:11
Alignment explanation
Indices: 124472359--124472410 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
124472349 TATACTAAAT
124472359 AAATAATAATA
1 AAATAATAATA
*
124472370 AAATAAT-ATT
1 AAATAATAATA
* *
124472380 AAATATCTCATA
1 AAATA-ATAATA
*
124472392 AAATATTAATA
1 AAATAATAATA
124472403 AAATAATA
1 AAATAATA
124472411 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:124473886 original size:19 final size:19
Alignment explanation
Indices: 124473862--124473900 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
124473852 AAACTATAAA
124473862 ATTATTAA-ATTATAAAAAT
1 ATTATTAATA-TATAAAAAT
*
124473881 ATTATTGATATATAAAAAT
1 ATTATTAATATATAAAAAT
124473900 A
1 A
124473901 CAAAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (19 bp):
ATTATTAATATATAAAAAT
Found at i:124474042 original size:29 final size:29
Alignment explanation
Indices: 124473970--124474057 Score: 72
Period size: 31 Copynumber: 2.9 Consensus size: 29
124473960 AAGTTTTCTG
124473970 AAATTATAGAAAAAATTAAAACTATTAAAA
1 AAATTATA-AAAAAATTAAAACTATTAAAA
**
124474000 AAATTTACTTAAAATTATTAAAA-TGA-TAAAA
1 AAA-TTA--TAAAAAAATTAAAACT-ATTAAAA
* *
124474031 AAATTATAAAAACCATTAAAACAATTA
1 AAATTATAAAAA-AATTAAAACTATTA
124474058 TAGAAATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
28 5 0.11
29 8 0.17
30 8 0.17
31 12 0.26
32 11 0.24
33 2 0.04
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (29 bp):
AAATTATAAAAAAATTAAAACTATTAAAA
Found at i:124476524 original size:18 final size:19
Alignment explanation
Indices: 124476482--124476518 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
124476472 TATCATACTG
124476482 ATAATTTTTATAATAATTA
1 ATAATTTTTATAATAATTA
*
124476501 ATAATTTTTTTAA-AATTA
1 ATAATTTTTATAATAATTA
124476519 TAAATTATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATAATTTTTATAATAATTA
Found at i:124478263 original size:18 final size:20
Alignment explanation
Indices: 124478224--124478263 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
124478214 GTTAAACATT
*
124478224 ATAGTTTTTTTTCTATTTTC
1 ATAGTTTTTTTTCTATTGTC
124478244 ATAGTTTTTTTT-T-TTGTC
1 ATAGTTTTTTTTCTATTGTC
124478262 AT
1 AT
124478264 TTTCAATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 1 0.05
20 12 0.63
ACGTcount: A:0.15, C:0.07, G:0.07, T:0.70
Consensus pattern (20 bp):
ATAGTTTTTTTTCTATTGTC
Found at i:124484207 original size:21 final size:22
Alignment explanation
Indices: 124484183--124484223 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
124484173 AAAAGAGATA
124484183 GAGAATGCA-AAAA-AATGGAGG
1 GAGAA-GCAGAAAAGAATGGAGG
124484204 GAGAAGCAGAAAAGAATGGA
1 GAGAAGCAGAAAAGAATGGA
124484224 AAATATAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.17
21 9 0.50
22 6 0.33
ACGTcount: A:0.54, C:0.05, G:0.34, T:0.07
Consensus pattern (22 bp):
GAGAAGCAGAAAAGAATGGAGG
Found at i:124485409 original size:12 final size:12
Alignment explanation
Indices: 124485377--124485410 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
124485367 TGGGTGATTG
*
124485377 ATTAAAAAATTA
1 ATTATAAAATTA
124485389 ATTACTAAAATTA
1 ATTA-TAAAATTA
124485402 ATTATAAAA
1 ATTATAAAA
124485411 AAATAAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (12 bp):
ATTATAAAATTA
Found at i:124486257 original size:16 final size:17
Alignment explanation
Indices: 124486222--124486264 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
124486212 GTAAGAAATT
* *
124486222 ATTAATAACATTATTTAC
1 ATTAATAATA-TATTAAC
124486240 ATT-ATAATATATTAAC
1 ATTAATAATATATTAAC
124486256 ATTAATAAT
1 ATTAATAAT
124486265 GAATTATTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 9 0.41
17 10 0.45
18 3 0.14
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTAATAATATATTAAC
Found at i:124486608 original size:3 final size:3
Alignment explanation
Indices: 124486602--124486635 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
124486592 AATAATATTT
*
124486602 TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
124486636 TGAATTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:124486931 original size:21 final size:22
Alignment explanation
Indices: 124486900--124486946 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
124486890 GTCATTCAAA
*
124486900 TTAATTTTTTAA-ATTTGTATTT
1 TTAATTTTTTAATATTT-TATAT
124486922 TTAA-TTTTTAATATTTTATAT
1 TTAATTTTTTAATATTTTATAT
124486943 TTAA
1 TTAA
124486947 AAGTTATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (22 bp):
TTAATTTTTTAATATTTTATAT
Found at i:124487893 original size:33 final size:33
Alignment explanation
Indices: 124487792--124487894 Score: 79
Period size: 33 Copynumber: 3.2 Consensus size: 33
124487782 ACGTCTATTT
*
124487792 TAATATTATTTAA-ATA-TATATAT-TTTTTAAA
1 TAATATT-TTTAATATATTATATATATTTTAAAA
** * * * ***
124487823 TTTTATTTTTAATTTATTA-AAAAATATTTATCT
1 TAATATTTTTAATATATTATATATAT-TTTAAAA
124487856 TAATATTTTTAATATATTATATATATTTTAAAA
1 TAATATTTTTAATATATTATATATATTTTAAAA
124487889 TAATAT
1 TAATAT
124487895 AAAAATTAAT
Statistics
Matches: 50, Mismatches: 17, Indels: 8
0.67 0.23 0.11
Matches are distributed among these distances:
30 5 0.10
31 9 0.18
32 3 0.06
33 29 0.58
34 4 0.08
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (33 bp):
TAATATTTTTAATATATTATATATATTTTAAAA
Found at i:124509010 original size:16 final size:16
Alignment explanation
Indices: 124508986--124509018 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
124508976 TGGCGCCTCT
*
124508986 TGGGTACTCTAAGAAA
1 TGGGAACTCTAAGAAA
124509002 TGGGAACTCTAAGAAA
1 TGGGAACTCTAAGAAA
124509018 T
1 T
124509019 CATTCAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (16 bp):
TGGGAACTCTAAGAAA
Found at i:124515542 original size:22 final size:21
Alignment explanation
Indices: 124515517--124515559 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
124515507 TAATCATATA
124515517 ATAAATTATTAATATAATAAAT
1 ATAAATTATT-ATATAATAAAT
* *
124515539 ATAATTTATTATTTAATAAAT
1 ATAAATTATTATATAATAAAT
124515560 TATTTAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATAAATTATTATATAATAAAT
Found at i:124515570 original size:19 final size:19
Alignment explanation
Indices: 124515503--124515571 Score: 72
Period size: 19 Copynumber: 3.6 Consensus size: 19
124515493 TAATTATTTA
*
124515503 TATTTAATCATATAATAAAT
1 TATTTAAT-ATTTAATAAAT
124515523 TA-TTAATA--TAATAAAT
1 TATTTAATATTTAATAAAT
*
124515539 ATAATTTATTATTTAATAAAT
1 -T-ATTTAATATTTAATAAAT
124515560 TATTTAATATTT
1 TATTTAATATTT
124515572 TAATTTTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
16 8 0.19
17 1 0.02
18 2 0.05
19 20 0.48
20 3 0.07
21 8 0.19
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTTAATATTTAATAAAT
Found at i:124515610 original size:13 final size:13
Alignment explanation
Indices: 124515579--124515617 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
124515569 TTTTAATTTT
124515579 ATTTT-AATAATAA
1 ATTTTAAATAAT-A
*
124515592 AATTTAAATAATA
1 ATTTTAAATAATA
124515605 ATTTTAAATAATA
1 ATTTTAAATAATA
124515618 TTGTTCACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 17 0.74
14 6 0.26
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTTTAAATAATA
Found at i:124520670 original size:22 final size:22
Alignment explanation
Indices: 124520622--124520671 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
124520612 AATTTAAATT
**
124520622 TTAAAAAATTATAAAATTTTCA
1 TTAAAAAATTATAAAATAATCA
*
124520644 TTAAAAATTTA-AAAATAATCA
1 TTAAAAAATTATAAAATAATCA
124520665 TATAAAA
1 T-TAAAA
124520672 TACACATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (22 bp):
TTAAAAAATTATAAAATAATCA
Found at i:124526621 original size:13 final size:13
Alignment explanation
Indices: 124526605--124526634 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
124526595 AAATAGTACC
124526605 AAAAAAAAACAAG
1 AAAAAAAAACAAG
124526618 AAAAAAAAACAAG
1 AAAAAAAAACAAG
124526631 AAAA
1 AAAA
124526635 CAGTAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.87, C:0.07, G:0.07, T:0.00
Consensus pattern (13 bp):
AAAAAAAAACAAG
Found at i:124527059 original size:13 final size:14
Alignment explanation
Indices: 124527035--124527063 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
124527025 CGACAAACGG
124527035 ATTAATAAATATTT
1 ATTAATAAATATTT
124527049 ATTAA-AAATATTT
1 ATTAATAAATATTT
124527062 AT
1 AT
124527064 GAAGTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTAATAAATATTT
Found at i:124527360 original size:8 final size:8
Alignment explanation
Indices: 124527347--124527379 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
124527337 TTATTATAAT
124527347 ATAATATA
1 ATAATATA
124527355 ATAATATA
1 ATAATATA
124527363 ATAATATA
1 ATAATATA
*
124527371 ATAACATA
1 ATAATATA
124527379 A
1 A
124527380 AGTAAAAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (8 bp):
ATAATATA
Found at i:124527379 original size:13 final size:13
Alignment explanation
Indices: 124527328--124527365 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
124527318 ATTATTTAAG
*
124527328 TAATAAT-TATTA
1 TAATAATATAATA
*
124527340 TTATAATATAATA
1 TAATAATATAATA
124527353 TAATAATATAATA
1 TAATAATATAATA
124527366 ATATAATAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 6 0.27
13 16 0.73
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
TAATAATATAATA
Found at i:124528425 original size:2 final size:2
Alignment explanation
Indices: 124528418--124528452 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
124528408 CCAATTTAAA
*
124528418 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
124528453 CAAGTTATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:124531097 original size:23 final size:22
Alignment explanation
Indices: 124531069--124531135 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 22
124531059 ACTATTTTAT
*
124531069 TTTTTTACTATCATTTATTAAA
1 TTTTTTACTATTATTTATTAAA
*
124531091 TTATTTT-CTTATTATTTATTATA
1 TT-TTTTAC-TATTATTTATTAAA
124531114 TTTTTTACACTATTATTTATTA
1 TTTTTT--ACTATTATTTATTA
124531136 TACTTATTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
22 7 0.18
23 18 0.47
24 12 0.32
25 1 0.03
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTTTTACTATTATTTATTAAA
Found at i:124531115 original size:12 final size:12
Alignment explanation
Indices: 124531081--124531143 Score: 51
Period size: 12 Copynumber: 5.2 Consensus size: 12
124531071 TTTTACTATC
*
124531081 ATTTATTAAATT
1 ATTTATTATATT
124531093 ATTT-TCT-TATT
1 ATTTAT-TATATT
124531104 ATTTATTATATT
1 ATTTATTATATT
* *
124531116 TTTTA-CACTATT
1 ATTTATTA-TATT
124531128 ATTTATTATACTT
1 ATTTATTATA-TT
124531141 ATT
1 ATT
124531144 ATATCATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
11 10 0.25
12 24 0.60
13 6 0.15
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.63
Consensus pattern (12 bp):
ATTTATTATATT
Found at i:124531166 original size:33 final size:31
Alignment explanation
Indices: 124531090--124531172 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 31
124531080 CATTTATTAA
*
124531090 ATTATTTTCTTATTATTTATTATATTTTTTAC
1 ATTATTTT-TTATTATTTATTATATATTTTAC
* *
124531122 ACTATTATTTATTATACTTATTATATCATTTT-C
1 ATTATTTTTTATTAT--TTATTATAT-ATTTTAC
124531155 ATTATTTTTTATTTATTT
1 ATTATTTTTTA-TTATTT
124531173 TCATTTAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
31 7 0.17
32 8 0.19
33 19 0.45
34 8 0.19
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (31 bp):
ATTATTTTTTATTATTTATTATATATTTTAC
Found at i:124531260 original size:2 final size:2
Alignment explanation
Indices: 124531253--124531280 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
124531243 ATGCTTCGTG
124531253 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
124531281 AAATAAAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:124531504 original size:18 final size:17
Alignment explanation
Indices: 124531449--124531504 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
124531439 TTATTTACCA
124531449 TATTTTA-TTTATTTATT
1 TATTTTACTTTA-TTATT
*
124531466 TATTTTACCGTTTACTA-T
1 TATTTTA-C-TTTATTATT
124531484 TATTTTACTATTATTATT
1 TATTTTACT-TTATTATT
124531502 TAT
1 TAT
124531505 AATTTTTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
16 1 0.03
17 13 0.41
18 12 0.38
19 2 0.06
20 4 0.12
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.66
Consensus pattern (17 bp):
TATTTTACTTTATTATT
Found at i:124535813 original size:21 final size:21
Alignment explanation
Indices: 124535789--124535828 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
124535779 GTGAGAGATC
*
124535789 AAATGCTGGAGTCTCAGAAAA
1 AAATGCTGGAGTCACAGAAAA
124535810 AAATGCTGGAGTCACAGAA
1 AAATGCTGGAGTCACAGAA
124535829 CAACATGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.17
Consensus pattern (21 bp):
AAATGCTGGAGTCACAGAAAA
Found at i:124543640 original size:43 final size:44
Alignment explanation
Indices: 124543583--124544053 Score: 191
Period size: 43 Copynumber: 10.7 Consensus size: 44
124543573 TATCATCAGC
* *
124543583 CTTATCTTCACTGAGCAGGAGTGGAACAGGCT-AAATATCAGGT
1 CTTATCTTCGCTGAGCAGGAGTGGAGCAGGCTCAAATATCAGGT
* * * **
124543626 CTTATCTTCGCTGAGCAGGAGCGGAGCA-GATCAAATTTTGGTGAAT
1 CTTATCTTCGCTGAGCAGGAGTGGAGCAGGCTCAAATATCAG-G--T
* * * * ** * *
124543672 CTTATCTCCAGGT-A-CCGGTGATGGAGCAGATTCCAATCATCA-GC
1 CTTATCTTC-GCTGAGCAGGAG-TGGAGCAGGCTCAAAT-ATCAGGT
* *
124543716 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAATACCAGGT
1 CTTATCTTCGCTGAGCAGGAGTGGAGCAGGCTCAAATATCAGGT
* * * **
124543759 CTTATCTTCGCTGAGCAGGAGCGGAGCA-GATCAAATTTTGGTGAAT
1 CTTATCTTCGCTGAGCAGGAGTGGAGCAGGCTCAAATATCAG-G--T
** * * ** * *
124543805 CTTATC-TCTATGTA-CCGGTGATGGAGCAGATTCCAATCATCA-GC
1 CTTATCTTCGCTG-AGCAGGAG-TGGAGCAGGCTCAAAT-ATCAGGT
* *
124543849 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAATACCAGGT
1 CTTATCTTCGCTGAGCAGGAGTGGAGCAGGCTCAAATATCAGGT
* * * * **
124543892 CTTATCTTCGTTGAGCAGGAGCGGAGCA-GATCAAATTTTGGTGAAT
1 CTTATCTTCGCTGAGCAGGAGTGGAGCAGGCTCAAATATCAG-G--T
* * * * * ** * *
124543938 CATATCTCCAC-GTA-CCGGCGATGGAGCAGATTCCAATCATCA-GC
1 CTTATCTTCGCTG-AGCAGGAG-TGGAGCAGGCTCAAAT-ATCAGGT
* ** * *
124543982 CTTATTTTTACTAAGCAGGAGTGGAGCAGGCT-AAATACCAGGT
1 CTTATCTTCGCTGAGCAGGAGTGGAGCAGGCTCAAATATCAGGT
*
124544025 CTTATCTTCGCTGAGCAGGAGCGGAGCAG
1 CTTATCTTCGCTGAGCAGGAGTGGAGCAG
124544054 AACAAATGTT
Statistics
Matches: 299, Mismatches: 96, Indels: 66
0.65 0.21 0.14
Matches are distributed among these distances:
42 15 0.05
43 129 0.43
44 54 0.18
45 33 0.11
46 48 0.16
47 17 0.06
48 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (44 bp):
CTTATCTTCGCTGAGCAGGAGTGGAGCAGGCTCAAATATCAGGT
Found at i:124543812 original size:133 final size:133
Alignment explanation
Indices: 124543574--124544187 Score: 1023
Period size: 133 Copynumber: 4.6 Consensus size: 133
124543564 GATTACAGAT
* *
124543574 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAACAGGCTAAATATCAGGTCTTATCTTCGCTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGGTCTTATCTTCGCTG
* *
124543639 AGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCAGGTACCGGTGATGGAGCAGATT
66 AGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
124543704 CCA
131 CCA
124543707 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGGTCTTATCTTCGCTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGGTCTTATCTTCGCTG
* * *
124543772 AGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCTATGTACCGGTGATGGAGCAGATT
66 AGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
124543837 CCA
131 CCA
*
124543840 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGGTCTTATCTTCGTTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGGTCTTATCTTCGCTG
*
124543905 AGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCATATCTCCACGTACCGGCGATGGAGCAGATT
66 AGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
124543970 CCA
131 CCA
* * *
124543973 ATCATCAGCCTTATTTTTACTAAGCAGGAGTGGAGCAGGCTAAATACCAGGTCTTATCTTCGCTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGGTCTTATCTTCGCTG
* * * * *
124544038 AGCAGGAGCGGAGCAGAACAAATGTTGGTGAATCTTATCTCCACGTATCGGCAATAGAGCAGATT
66 AGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
124544103 CCA
131 CCA
** * *
124544106 ATCATCAGCCTTATCTTCACTGAGCAGGAGT-GAGCAGGCTAAATTGCAGATCTTATCTTCGTTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGGTCTTATCTTCGCTG
*
124544170 AGCAAGAGCGGAGCAGAT
66 AGCAGGAGCGGAGCAGAT
124544188 AAAGTTCCAA
Statistics
Matches: 453, Mismatches: 28, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
132 45 0.10
133 408 0.90
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (133 bp):
ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGGTCTTATCTTCGCTG
AGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
CCA
Found at i:124545356 original size:3 final size:3
Alignment explanation
Indices: 124545348--124545470 Score: 94
Period size: 3 Copynumber: 41.0 Consensus size: 3
124545338 TAGTGCCATT
* * * * *
124545348 ATA ATA ATA AAA ATA ACA AT- ATG TTA CTA ATA ATA ATAA ATAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A ATA
* * *
124545394 ATG GTA ATA A-A TATA TATA A-A ATA ATA GTA A-A AGTA ATA A-A ATA
1 ATA ATA ATA ATA -ATA -ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA
124545438 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
124545471 CTCTCCCCCT
Statistics
Matches: 98, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
2 9 0.09
3 75 0.77
4 14 0.14
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:124545860 original size:30 final size:30
Alignment explanation
Indices: 124545826--124545894 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
124545816 CATGGTGACA
124545826 AGTAGGGTAATAGAGTTAATGGGGTAGCTT
1 AGTAGGGTAATAGAGTTAATGGGGTAGCTT
* * * *
124545856 AGTAGGGTGATGGAGTTAGTGGGGTGGCTT
1 AGTAGGGTAATAGAGTTAATGGGGTAGCTT
*
124545886 AGTGGGGTA
1 AGTAGGGTA
124545895 GTTTAGGAGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.23, C:0.03, G:0.45, T:0.29
Consensus pattern (30 bp):
AGTAGGGTAATAGAGTTAATGGGGTAGCTT
Found at i:124546299 original size:130 final size:132
Alignment explanation
Indices: 124545994--124546335 Score: 501
Period size: 135 Copynumber: 2.6 Consensus size: 132
124545984 CTACATATAA
* *
124545994 CAGATTCCAATCATGAGCCTTATCTTCACTGAGCAGAAGTGAAGCAGGCTAAATATAACAGATCT
1 CAGATTCCAATCATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTAAATATAACAGATCT
* * * * * *
124546059 TATTTTCGCTGAGTAGGAGCGGAGCAGATCGAATTTTGGCTAATCTTATCTCCACGTACTGGCGA
66 TATCTTCGTTGAGCAGGAACAGAGCAGATCGAATTTTGGCTAATC-T-TCT-CACGTACTGACGA
124546124 TGGAG
128 TGGAG
*
124546129 CAGATTCCAATCATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTAAATATAGCAGATCT
1 CAGATTCCAATCATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTAAATATAACAGATCT
* *
124546194 TATCTTCGTTGAGCAGGAACAGAGTAGATCGAATTTTGG-TGAATC-TCT-ACGTACTGATGATG
66 TATCTTCGTTGAGCAGGAACAGAGCAGATCGAATTTTGGCT-AATCTTCTCACGTACTGACGATG
124546256 GAG
130 GAG
* *
124546259 CAGATTCTAATCATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTAAATATATCAGATCT
1 CAGATTCCAATCATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTAAATATAACAGATCT
*
124546324 TATCTCCGTTGA
66 TATCTTCGTTGA
124546336 ACAAGAGTAG
Statistics
Matches: 192, Mismatches: 14, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
130 89 0.46
132 3 0.02
134 1 0.01
135 99 0.52
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (132 bp):
CAGATTCCAATCATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTAAATATAACAGATCT
TATCTTCGTTGAGCAGGAACAGAGCAGATCGAATTTTGGCTAATCTTCTCACGTACTGACGATGG
AG
Found at i:124547682 original size:26 final size:25
Alignment explanation
Indices: 124547635--124547699 Score: 60
Period size: 26 Copynumber: 2.6 Consensus size: 25
124547625 TAATTCTTGG
* * *
124547635 TTTTTTTATCCTACTATTTATTATAA
1 TTTTATTATACTACTATCTATTAT-A
* *
124547661 TTTTATTATACTATTATCTATTGTA
1 TTTTATTATACTACTATCTATTATA
*
124547686 -TTTATTATATTACT
1 TTTTATTATACTACT
124547700 TGTATATTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
24 12 0.38
25 1 0.03
26 19 0.59
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.62
Consensus pattern (25 bp):
TTTTATTATACTACTATCTATTATA
Found at i:124548616 original size:19 final size:19
Alignment explanation
Indices: 124548592--124548632 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
124548582 TTAAATTGTT
*
124548592 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
124548611 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
124548630 TTA
1 TTA
124548633 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:124550674 original size:39 final size:39
Alignment explanation
Indices: 124550620--124550754 Score: 243
Period size: 39 Copynumber: 3.5 Consensus size: 39
124550610 TTATATGATT
124550620 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
124550659 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
124550698 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
124550737 TGGTGTTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
124550755 TAAAGTCCCG
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.17, C:0.22, G:0.31, T:0.30
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:124554278 original size:8 final size:8
Alignment explanation
Indices: 124554276--124554304 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
124554266 TTATACTAAT
124554276 ATAATATA
1 ATAATATA
124554284 ATAATATA
1 ATAATATA
124554292 ATAATATA
1 ATAATATA
124554300 ATAAT
1 ATAAT
124554305 GATTACTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATAATATA
Found at i:124555235 original size:19 final size:20
Alignment explanation
Indices: 124555211--124555251 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
124555201 TTAAAAATTA
*
124555211 TTTTTATCAT-ATTAATATT
1 TTTTTATAATAATTAATATT
*
124555230 TTTTTATAATAATTGATATT
1 TTTTTATAATAATTAATATT
124555250 TT
1 TT
124555252 AAAAATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTTTATAATAATTAATATT
Found at i:124563134 original size:19 final size:19
Alignment explanation
Indices: 124563110--124563173 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
124563100 TGAGCTTCAG
124563110 TTAGCATTCGGGCTTCCGT
1 TTAGCATTCGGGCTTCCGT
* * *
124563129 TTAGCACTTATGTGCTTCAG-
1 TTAGCA-TT-CGGGCTTCCGT
*
124563149 TTAGCCTTCGGGCTTCCGT
1 TTAGCATTCGGGCTTCCGT
124563168 TTAGCA
1 TTAGCA
124563174 CTTTTGTGCT
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
18 7 0.21
19 13 0.38
20 7 0.21
21 7 0.21
ACGTcount: A:0.14, C:0.25, G:0.23, T:0.38
Consensus pattern (19 bp):
TTAGCATTCGGGCTTCCGT
Found at i:124563146 original size:39 final size:39
Alignment explanation
Indices: 124563103--124563191 Score: 160
Period size: 39 Copynumber: 2.3 Consensus size: 39
124563093 GCTCTGATGA
124563103 GCTTCAGTTAGCATTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCATTCGGGCTTCCGTTTAGCACTTATGT
* *
124563142 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTTTGT
1 GCTTCAGTTAGCATTCGGGCTTCCGTTTAGCACTTATGT
124563181 GCTTCAGTTAG
1 GCTTCAGTTAG
124563192 ATTTCAGGTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.13, C:0.24, G:0.24, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCATTCGGGCTTCCGTTTAGCACTTATGT
Found at i:124563185 original size:21 final size:21
Alignment explanation
Indices: 124563121--124563185 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
124563111 TAGCATTCGG
*
124563121 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTTTGT
* * *
124563142 GCTTCAG-TTAGC-C-TTCGG
1 GCTTCCGTTTAGCACTTTTGT
124563160 GCTTCCGTTTAGCACTTTTGT
1 GCTTCCGTTTAGCACTTTTGT
124563181 GCTTC
1 GCTTC
124563186 AGTTAGATTT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 8 0.24
19 6 0.18
20 6 0.18
21 14 0.41
ACGTcount: A:0.11, C:0.26, G:0.22, T:0.42
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTTTGT
Found at i:124568578 original size:5 final size:5
Alignment explanation
Indices: 124568568--124568594 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
124568558 TTATGTTTTA
124568568 ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT AT
124568595 AAACTAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:124569886 original size:15 final size:15
Alignment explanation
Indices: 124569866--124569922 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
124569856 CGATGAATTT
124569866 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
124569881 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
124569896 ATTGAATTTATATTG
1 ATTGAATTTATATTG
124569911 ATTGAA-TTATAT
1 ATTGAATTTATAT
124569923 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:124570331 original size:23 final size:23
Alignment explanation
Indices: 124570305--124570365 Score: 94
Period size: 21 Copynumber: 2.8 Consensus size: 23
124570295 AGACACTTTA
124570305 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
124570328 TGTGTCGTA--TCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
124570349 TGTGTCGT-TTT-AGGCAC
1 TGTGTCGTATTTCAGGCAC
124570366 TTTATGTGTC
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
21 26 0.72
22 1 0.03
23 9 0.25
ACGTcount: A:0.13, C:0.25, G:0.28, T:0.34
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCG
Found at i:124570373 original size:21 final size:21
Alignment explanation
Indices: 124570304--124570377 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
124570294 CAGACACTTT
124570304 ATGTGTCGTATTTCAGGCACCTC
1 ATGTGTCGT-TTT-AGGCACCTC
* * *
124570327 GTGTGTCGTATCAGGCACCTC
1 ATGTGTCGTTTTAGGCACCTC
* * *
124570348 GTGTGTCGTTTTAGGCACTTT
1 ATGTGTCGTTTTAGGCACCTC
124570369 ATGTGTCGT
1 ATGTGTCGT
124570378 ACTCTGATCA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
21 34 0.79
22 1 0.02
23 8 0.19
ACGTcount: A:0.14, C:0.22, G:0.27, T:0.38
Consensus pattern (21 bp):
ATGTGTCGTTTTAGGCACCTC
Found at i:124574344 original size:21 final size:21
Alignment explanation
Indices: 124574319--124574383 Score: 91
Period size: 19 Copynumber: 3.2 Consensus size: 21
124574309 TAGCCTTCGG
124574319 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
*
124574340 GCTTCAG-TTAGC-CTTATG-
1 GCTTCCGTTTAGCACTTATGT
*
124574358 GCTTCCGTTTAGCACTTTTGT
1 GCTTCCGTTTAGCACTTATGT
124574379 GCTTC
1 GCTTC
124574384 AGTTAGATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
18 6 0.16
19 11 0.29
20 10 0.26
21 11 0.29
ACGTcount: A:0.12, C:0.25, G:0.20, T:0.43
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTATGT
Found at i:124574347 original size:39 final size:39
Alignment explanation
Indices: 124574301--124574389 Score: 151
Period size: 39 Copynumber: 2.3 Consensus size: 39
124574291 GCTCTGATGA
*
124574301 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTAGGGCTTCCGTTTAGCACTTATGT
* *
124574340 GCTTCAGTTAGCCTTATGGCTTCCGTTTAGCACTTTTGT
1 GCTTCAGTTAGCCTTAGGGCTTCCGTTTAGCACTTATGT
124574379 GCTTCAGTTAG
1 GCTTCAGTTAG
124574390 ATTTCGGGTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.40
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTAGGGCTTCCGTTTAGCACTTATGT
Found at i:124577372 original size:42 final size:42
Alignment explanation
Indices: 124577304--124577417 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 42
124577294 CTTCGTTTTC
** * *
124577304 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
* *
124577347 T-GATGCCATAGCCCAGCTATAGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
*
124577388 TCGATACCATAGCCCAGCTATGGTCTTACA
1 TCGATGCCATAGCCCAGCTATGGTCTTACA
124577418 TGAATCACAT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 2 0.03
42 59 0.95
43 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:124577450 original size:46 final size:47
Alignment explanation
Indices: 124577389--124577508 Score: 134
Period size: 47 Copynumber: 2.6 Consensus size: 47
124577379 ATTCATATAT
* * * * *
124577389 CGATACCATAGCCCAGCTATGGTCTTACAT-GAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTACATAGAAGCACATATCACAC
* * * * *
124577435 TGATGCCATATCCCAGATATGGTTTTATATAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTACATAGAAGCACATATCACAC
*
124577482 CGATGCCATATCCCAAATATGGTCTTA
1 CGATGCCATATCCCAGATATGGTCTTA
124577509 TACGGAAATC
Statistics
Matches: 60, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
46 24 0.40
47 36 0.60
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (47 bp):
CGATGCCATATCCCAGATATGGTCTTACATAGAAGCACATATCACAC
Found at i:124577572 original size:31 final size:31
Alignment explanation
Indices: 124577537--124577716 Score: 245
Period size: 31 Copynumber: 5.8 Consensus size: 31
124577527 CTTGTCACTT
*
124577537 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* ** *
124577568 GTAGCCGGAGCTACCGTTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
124577599 GTAGCCGGAGCTACCACTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
124577630 GTAGCCGGAA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
124577661 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
** *
124577692 GTAGCTAAAGCTACAACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
124577717 TGTCATTTGT
Statistics
Matches: 132, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
30 3 0.02
31 127 0.96
32 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:124577795 original size:50 final size:51
Alignment explanation
Indices: 124577699--124577820 Score: 187
Period size: 50 Copynumber: 2.4 Consensus size: 51
124577689 CAGGTAGCTA
*
124577699 AAGCTA-CAACTTTTCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCG
1 AAGCTATC-ACTTATCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCG
*
124577750 AAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGTGTAGCCG
1 AAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGTGTAGCCG
124577800 AAGCTATCACTTATCACTTGT
1 AAGCTATCACTTATCACTTGT
124577821 TGCCATGGTC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
50 45 0.68
51 20 0.30
52 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (51 bp):
AAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCG
Found at i:124577955 original size:14 final size:15
Alignment explanation
Indices: 124577936--124577964 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
124577926 TTTTATCATC
124577936 AACACAT-ATGAAAT
1 AACACATCATGAAAT
124577950 AACACATCATGAAAT
1 AACACATCATGAAAT
124577965 TCATAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.17, G:0.07, T:0.21
Consensus pattern (15 bp):
AACACATCATGAAAT
Found at i:124581243 original size:38 final size:38
Alignment explanation
Indices: 124581164--124581247 Score: 91
Period size: 38 Copynumber: 2.2 Consensus size: 38
124581154 TCCTTCTTTA
* * * * *
124581164 AAGTTTAAATTATTGATGTTTTATAATCAATTTGATTT
1 AAGTTCAAAATATTAATGTTTTATAATCAATTCGATAT
*
124581202 AAGTTCAAAATATTAATTTTTTATAAT-AATATCGATAT
1 AAGTTCAAAATATTAATGTTTTATAATCAAT-TCGATAT
124581240 AAG-TCAAA
1 AAGTTCAAA
124581248 TTTAAGGTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
37 8 0.21
38 31 0.79
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (38 bp):
AAGTTCAAAATATTAATGTTTTATAATCAATTCGATAT
Found at i:124589429 original size:32 final size:33
Alignment explanation
Indices: 124589393--124589462 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
124589383 GTTAAATTTC
*
124589393 TAATCAATTCTAA-TTTCTTCAAGGATTTGTAT
1 TAATCAATCCTAATTTTCTTCAAGGATTTGTAT
*
124589425 TAATCAATCCTAATTTTTTTCAAGGATTTGTAT
1 TAATCAATCCTAATTTTCTTCAAGGATTTGTAT
124589458 TAATC
1 TAATC
124589463 GTCTAAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 12 0.34
33 23 0.66
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.47
Consensus pattern (33 bp):
TAATCAATCCTAATTTTCTTCAAGGATTTGTAT
Found at i:124590746 original size:19 final size:19
Alignment explanation
Indices: 124590719--124590759 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
124590709 ATAAAAAAAA
*
124590719 TTAATTTTTATT-TAGTATG
1 TTAAATTTTATTATA-TATG
124590738 TTAAATTTTATTATATATG
1 TTAAATTTTATTATATATG
124590757 TTA
1 TTA
124590760 TTTAAGAGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (19 bp):
TTAAATTTTATTATATATG
Found at i:124594483 original size:13 final size:13
Alignment explanation
Indices: 124594465--124594515 Score: 54
Period size: 13 Copynumber: 4.0 Consensus size: 13
124594455 ATCTCGCCCC
124594465 AAAAATAATATTT
1 AAAAATAATATTT
124594478 AAAAATAA-ATTT
1 AAAAATAATATTT
*
124594490 TAAAATCAAT-TTT
1 AAAAAT-AATATTT
124594503 -AAAATAATTATTT
1 AAAAATAA-TATTT
124594516 GGATATTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
11 2 0.06
12 15 0.45
13 16 0.48
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (13 bp):
AAAAATAATATTT
Found at i:124594489 original size:12 final size:12
Alignment explanation
Indices: 124594465--124594509 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
124594455 ATCTCGCCCC
124594465 AAAAATAATATTT
1 AAAAATAA-ATTT
124594478 AAAAATAAATTT
1 AAAAATAAATTT
* *
124594490 TAAAATCAATTT
1 AAAAATAAATTT
*
124594502 TAAAATAA
1 AAAAATAA
124594510 TTATTTGGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
12 21 0.72
13 8 0.28
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (12 bp):
AAAAATAAATTT
Found at i:124595924 original size:20 final size:23
Alignment explanation
Indices: 124595899--124595942 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
124595889 TTATTTATGT
124595899 TAAAATAA-TA-A-TTTTATTAA
1 TAAAATAATTACATTTTTATTAA
124595919 TAAAATAATTACATTTTTATTAA
1 TAAAATAATTACATTTTTATTAA
124595942 T
1 T
124595943 TATATTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.38
21 2 0.10
22 1 0.05
23 10 0.48
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TAAAATAATTACATTTTTATTAA
Found at i:124597734 original size:3 final size:3
Alignment explanation
Indices: 124597726--124597771 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
124597716 TCCAACCATT
124597726 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
124597772 ACTAAAATGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:124600152 original size:91 final size:91
Alignment explanation
Indices: 124599921--124600193 Score: 386
Period size: 91 Copynumber: 3.0 Consensus size: 91
124599911 TTTGACATGA
* * * *
124599921 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATAGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCTGTCATGTTGCCATGGTATCTTTCAAC
* * *
124599986 CATGGTCTTATCCATTTCATGTCACGT
65 CATGGTCTTATACATTTCATATCAGGT
* *
124600013 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTT-CTGTCATGTTGCCATGGTATCTTTCAAC
*
124600078 CATGGTCTTATTCATTT-ATATCAGGT
65 CATGGTCTTATACATTTCATATCAGGT
* * *
124600104 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTC-TGTCATGTTGCCATGGTATCTTTCAAC
*
124600169 CATGGTCTTACACATTTCATATCAG
65 CATGGTCTTATACATTTCATATCAG
124600194 AGAGCACACT
Statistics
Matches: 162, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
90 1 0.01
91 83 0.51
92 78 0.48
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCTGTCATGTTGCCATGGTATCTTTCAACC
ATGGTCTTATACATTTCATATCAGGT
Found at i:124600152 original size:137 final size:138
Alignment explanation
Indices: 124599916--124600178 Score: 404
Period size: 137 Copynumber: 1.9 Consensus size: 138
124599906 TTATCTTTGA
* * * * *
124599916 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATAGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTATATCAGGTTGCCATAGTATCTT
*
124599981 TCAACCATGGTCTTATCCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
66 TCAACCATGGTCTTATCCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
124600046 TTTCCCGT
131 TTTCCCGT
* * * *
124600054 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTATATCAGGTTGCCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTATATCAGGTTGCCATAGTATCTT
*
124600118 TCAACCATGGTCTTA-CACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
66 TCAACCATGGTCTTATC-CATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTA
124600179 CACATTTCAT
Statistics
Matches: 113, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
136 1 0.01
137 79 0.70
138 33 0.29
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (138 bp):
CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTATATCAGGTTGCCATAGTATCTT
TCAACCATGGTCTTATCCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
TTTCCCGT
Found at i:124600187 original size:46 final size:46
Alignment explanation
Indices: 124599921--124600193 Score: 363
Period size: 46 Copynumber: 6.0 Consensus size: 46
124599911 TTTGACATGA
* * * * *
124599921 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * *
124599967 TGCCATAGTATCTTTCAACCATGGTCTTA-TCCATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACT-CATTTCATATCAGGT
* *** *
124600013 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
124600059 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTT-ATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
124600104 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
124600150 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
124600194 AGAGCACACT
Statistics
Matches: 210, Mismatches: 13, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
45 44 0.21
46 165 0.79
47 1 0.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:124600305 original size:12 final size:12
Alignment explanation
Indices: 124600288--124600314 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
124600278 GTCGGGATTA
124600288 AAAGTCCAGGCT
1 AAAGTCCAGGCT
124600300 AAAGTCCAGGCT
1 AAAGTCCAGGCT
124600312 AAA
1 AAA
124600315 TCCCCTACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.15
Consensus pattern (12 bp):
AAAGTCCAGGCT
Found at i:124602078 original size:12 final size:13
Alignment explanation
Indices: 124602048--124602080 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
124602038 AATAATATAA
124602048 TAATAAAAATATC
1 TAATAAAAATATC
*
124602061 TCATAAAAATAT-
1 TAATAAAAATATC
124602073 TAATAAAA
1 TAATAAAA
124602081 TAATATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (13 bp):
TAATAAAAATATC
Found at i:124603242 original size:5 final size:6
Alignment explanation
Indices: 124603223--124603259 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
124603213 GTTAACTGTG
124603223 TTTCTT TTTCTT TTTCTT TTTC-T TTTC-T TTTCTT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTT
124603260 TTAAAAGAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 10 0.33
6 20 0.67
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTCTT
Found at i:124609072 original size:35 final size:35
Alignment explanation
Indices: 124609026--124609094 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
124609016 GTTACATAGT
124609026 ATTTCAAAGTGATTATGATCAAGCAAATTTTAGCG
1 ATTTCAAAGTGATTATGATCAAGCAAATTTTAGCG
124609061 ATTTCAAAGTGATTATGATCAAGCAAATTTTAGC
1 ATTTCAAAGTGATTATGATCAAGCAAATTTTAGC
124609095 AACCAATTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.35
Consensus pattern (35 bp):
ATTTCAAAGTGATTATGATCAAGCAAATTTTAGCG
Found at i:124612837 original size:11 final size:10
Alignment explanation
Indices: 124612761--124612837 Score: 59
Period size: 10 Copynumber: 7.7 Consensus size: 10
124612751 TTAAAATTAC
124612761 ATAAAAAT-T
1 ATAAAAATAT
*
124612770 ATTAAAAT-T
1 ATAAAAATAT
124612779 ATAAAAATAT
1 ATAAAAATAT
*
124612789 AGAAAAATAT
1 ATAAAAATAT
* * *
124612799 AGAAAATTGT
1 ATAAAAATAT
*
124612809 ATTAAAATATT
1 ATAAAAATA-T
*
124612820 AGTAAAATTAT
1 A-TAAAAATAT
124612831 ATAAAAA
1 ATAAAAA
124612838 AAATTAAGAC
Statistics
Matches: 53, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
9 15 0.28
10 28 0.53
11 4 0.08
12 6 0.11
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.32
Consensus pattern (10 bp):
ATAAAAATAT
Found at i:124612837 original size:22 final size:22
Alignment explanation
Indices: 124612776--124612837 Score: 67
Period size: 20 Copynumber: 3.0 Consensus size: 22
124612766 AATTATTAAA
* *
124612776 ATTA-TAAAAATATAGAAAAAT
1 ATTAGTAAAATTATATAAAAAT
* *
124612797 A-TAG-AAAATTGTATTAAAAT
1 ATTAGTAAAATTATATAAAAAT
124612817 ATTAGTAAAATTATATAAAAA
1 ATTAGTAAAATTATATAAAAA
124612838 AAATTAAGAC
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
20 15 0.47
21 4 0.12
22 13 0.41
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (22 bp):
ATTAGTAAAATTATATAAAAAT
Found at i:124622798 original size:120 final size:122
Alignment explanation
Indices: 124622634--124622871 Score: 390
Period size: 120 Copynumber: 2.0 Consensus size: 122
124622624 TTTCACTTTC
*
124622634 CTAAATTTTAAATAATTTTAATTTTAATCCTGAAACATCGATGTTATGTTAATTAA-TTTTTCTG
1 CTAAATTTTAAATAATTTTAATTTTAATCCTGAAACATCGATGTTATGCTAATTAATTTTTTCTG
* *
124622698 TTATTAAATATAATTTCATATTTAGTTATTTTATTCTCTTT-ATTTTTATTTAGTCT
66 TTACTAAATATAATTTCATATTTAGTTATTTTATCCTCTTTCATTTTTATTTAGTCT
* * *
124622754 CTAAATTTTAAATCATTTTAATTTTAATCTTGAAATATCGATGTTATGCTAATTAATTTTTTCTG
1 CTAAATTTTAAATAATTTTAATTTTAATCCTGAAACATCGATGTTATGCTAATTAATTTTTTCTG
* *
124622819 TTACTAAATATATTTTCATATTTAGTTATTTTGTCCTCTTTCATTTTTATTTA
66 TTACTAAATATAATTTCATATTTAGTTATTTTATCCTCTTTCATTTTTATTTA
124622872 TTTATAATAA
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
120 52 0.48
121 45 0.42
122 11 0.10
ACGTcount: A:0.30, C:0.09, G:0.06, T:0.55
Consensus pattern (122 bp):
CTAAATTTTAAATAATTTTAATTTTAATCCTGAAACATCGATGTTATGCTAATTAATTTTTTCTG
TTACTAAATATAATTTCATATTTAGTTATTTTATCCTCTTTCATTTTTATTTAGTCT
Found at i:124625309 original size:82 final size:79
Alignment explanation
Indices: 124625220--124625404 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 79
124625210 ATGGAGAAAT
* *
124625220 TATAAATTAATGTATATTAAAATTACACTTTAAC-CC-CAAAA-ATAAATAATTTGCAATTCAGT
1 TATAAATTAATATATAGTAAAATTACA-TTTAACTCCTCAAAATA-AAAT-A-TT-CAATTCAG-
*
124625282 TCTCTTATAAATACACAAAC
60 TCTCTTATAAATAAACAAAC
* ** *
124625302 TATAAATTAATATATAGTAAAACTGTATTTAGCTCCTCAAAATAAAATATTCAATTCAGTCTCTT
1 TATAAATTAATATATAGTAAAATTACATTTAACTCCTCAAAATAAAATATTCAATTCAGTCTCTT
* *
124625367 ATAAATAAATAAAT
66 ATAAATAAACAAAC
*
124625381 TACAAATTAATATATAGTAAAATT
1 TATAAATTAATATATAGTAAAATT
124625405 GTATTTTAAA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
79 39 0.44
80 8 0.09
81 7 0.08
82 25 0.28
83 9 0.10
84 1 0.01
ACGTcount: A:0.48, C:0.12, G:0.04, T:0.36
Consensus pattern (79 bp):
TATAAATTAATATATAGTAAAATTACATTTAACTCCTCAAAATAAAATATTCAATTCAGTCTCTT
ATAAATAAACAAAC
Found at i:124627105 original size:8 final size:8
Alignment explanation
Indices: 124627085--124627131 Score: 67
Period size: 8 Copynumber: 5.6 Consensus size: 8
124627075 ATTTATAAAA
124627085 AAATTTCTT
1 AAATTT-TT
124627094 AAATTTTT
1 AAATTTTT
124627102 AAATTTTT
1 AAATTTTT
*
124627110 AAATATTT
1 AAATTTTT
124627118 AAATATTTT
1 AAAT-TTTT
124627127 AAATT
1 AAATT
124627132 ATTATTAACC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
8 22 0.63
9 13 0.37
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (8 bp):
AAATTTTT
Found at i:124627107 original size:17 final size:16
Alignment explanation
Indices: 124627085--124627131 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 16
124627075 ATTTATAAAA
124627085 AAATTTCTTAAATTTTT
1 AAATTT-TTAAATTTTT
*
124627102 AAATTTTTAAATATTT
1 AAATTTTTAAATTTTT
124627118 AAATATTTTAAATT
1 AAAT-TTTTAAATT
124627132 ATTATTAACC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 13 0.48
17 14 0.52
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
AAATTTTTAAATTTTT
Found at i:124635074 original size:6 final size:6
Alignment explanation
Indices: 124635063--124635089 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
124635053 CTCCAATAAA
124635063 TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
124635090 GTATAATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:124637782 original size:27 final size:27
Alignment explanation
Indices: 124637751--124637814 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 27
124637741 TAAAAATATA
*
124637751 AAAATTAAAATGTAAAA-TATATTTTTAT
1 AAAATTAAAAT-AAAAATTAT-TTTTTAT
124637779 AAATATTAAAATAAAAATTATTTTTTAT
1 AAA-ATTAAAATAAAAATTATTTTTTAT
*
124637807 ACAATTAA
1 AAAATTAA
124637815 TATTGTAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 5 0.16
28 16 0.50
29 11 0.34
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (27 bp):
AAAATTAAAATAAAAATTATTTTTTAT
Found at i:124637807 original size:28 final size:29
Alignment explanation
Indices: 124637747--124637803 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
124637737 ATTATAAAAA
*
124637747 TATAAAAATTAAAATGTAAAATATATTTT
1 TATAAAAATTAAAATGAAAAATATATTTT
*
124637776 TATAAATATTAAAAT-AAAAAT-TATTTT
1 TATAAAAATTAAAATGAAAAATATATTTT
124637803 T
1 T
124637804 TATACAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 7 0.27
28 5 0.19
29 14 0.54
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (29 bp):
TATAAAAATTAAAATGAAAAATATATTTT
Found at i:124639109 original size:18 final size:18
Alignment explanation
Indices: 124639083--124639118 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
124639073 AGGTTACCCT
124639083 ACGCAGGTCGAGTTGTCC
1 ACGCAGGTCGAGTTGTCC
*
124639101 ACGCGGGTCGAGTTGTCC
1 ACGCAGGTCGAGTTGTCC
124639119 GCTGCAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.28, G:0.36, T:0.22
Consensus pattern (18 bp):
ACGCAGGTCGAGTTGTCC
Found at i:124645546 original size:3 final size:3
Alignment explanation
Indices: 124645534--124645582 Score: 62
Period size: 3 Copynumber: 16.3 Consensus size: 3
124645524 GGTGATTGTT
* * * *
124645534 GTG GTA GTG GTG GTG GTG GTG GTG GTG ATG GTG ATG GTG GTG ATG GTG
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG
124645582 G
1 G
124645583 AGTGGAAGGT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.08, C:0.00, G:0.59, T:0.33
Consensus pattern (3 bp):
GTG
Found at i:124648731 original size:15 final size:14
Alignment explanation
Indices: 124648713--124648755 Score: 52
Period size: 13 Copynumber: 3.0 Consensus size: 14
124648703 ATAAGACCTG
*
124648713 GAGACTGAAGAGTTA
1 GAGAATGAA-AGTTA
124648728 GAGAATG-AAGTTA
1 GAGAATGAAAGTTA
124648741 GAGAATGAAAAGTTA
1 GAGAATG-AAAGTTA
124648756 ACACTTGCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 12 0.48
14 1 0.04
15 12 0.48
ACGTcount: A:0.47, C:0.02, G:0.30, T:0.21
Consensus pattern (14 bp):
GAGAATGAAAGTTA
Found at i:124648741 original size:13 final size:13
Alignment explanation
Indices: 124648723--124648749 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
124648713 GAGACTGAAG
124648723 AGTTAGAGAATGA
1 AGTTAGAGAATGA
124648736 AGTTAGAGAATGA
1 AGTTAGAGAATGA
124648749 A
1 A
124648750 AAGTTAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.22
Consensus pattern (13 bp):
AGTTAGAGAATGA
Found at i:124655149 original size:25 final size:25
Alignment explanation
Indices: 124655115--124655165 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
124655105 TTCCTTATAA
**
124655115 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
124655140 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
124655165 A
1 A
124655166 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:124655164 original size:12 final size:12
Alignment explanation
Indices: 124655118--124655165 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
124655108 CTTATAAACT
124655118 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
124655130 TTCTATTAGGACT
1 TTAAATTAGGA-A
124655143 TTAAATTAGGAA
1 TTAAATTAGGAA
*
124655155 TTAGATTAGGA
1 TTAAATTAGGA
124655166 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:124658291 original size:80 final size:80
Alignment explanation
Indices: 124658158--124658319 Score: 324
Period size: 80 Copynumber: 2.0 Consensus size: 80
124658148 AGAAATATTT
124658158 GATATTCATGAAACCAAAAGGTTTGAAAGGTATATAATTGACTAATGTGAAAGGTAATTGGCATT
1 GATATTCATGAAACCAAAAGGTTTGAAAGGTATATAATTGACTAATGTGAAAGGTAATTGGCATT
124658223 CATTGATAGGTGAGA
66 CATTGATAGGTGAGA
124658238 GATATTCATGAAACCAAAAGGTTTGAAAGGTATATAATTGACTAATGTGAAAGGTAATTGGCATT
1 GATATTCATGAAACCAAAAGGTTTGAAAGGTATATAATTGACTAATGTGAAAGGTAATTGGCATT
124658303 CATTGATAGGTGAGA
66 CATTGATAGGTGAGA
124658318 GA
1 GA
124658320 AGTGAACAAG
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 82 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (80 bp):
GATATTCATGAAACCAAAAGGTTTGAAAGGTATATAATTGACTAATGTGAAAGGTAATTGGCATT
CATTGATAGGTGAGA
Found at i:124658621 original size:15 final size:15
Alignment explanation
Indices: 124658589--124658618 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
124658579 TTACCTGAAA
124658589 TATAACAAATAGATT
1 TATAACAAATAGATT
124658604 TATAA-AAATAGATT
1 TATAACAAATAGATT
124658618 T
1 T
124658619 TATTATAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (15 bp):
TATAACAAATAGATT
Found at i:124663764 original size:15 final size:15
Alignment explanation
Indices: 124663744--124663775 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
124663734 TACTGTGAAG
124663744 ACTTTAACTTATTTT
1 ACTTTAACTTATTTT
124663759 ACTTTAACTTATTTT
1 ACTTTAACTTATTTT
124663774 AC
1 AC
124663776 AAATACTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.16, G:0.00, T:0.56
Consensus pattern (15 bp):
ACTTTAACTTATTTT
Done.