Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 434 of 444
Found at i:125660498 original size:15 final size:16
Alignment explanation
Indices: 125660480--125660515 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
125660470 AAAGAAAAAG
125660480 AAAAACCT-ACCCAAA
1 AAAAACCTAACCCAAA
125660495 AAAAACCTAACCCAAA
1 AAAAACCTAACCCAAA
125660511 AAAAA
1 AAAAA
125660516 AAAGAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.67, C:0.28, G:0.00, T:0.06
Consensus pattern (16 bp):
AAAAACCTAACCCAAA
Found at i:125660499 original size:16 final size:17
Alignment explanation
Indices: 125660475--125660516 Score: 61
Period size: 15 Copynumber: 2.5 Consensus size: 17
125660465 AAAAAAAAGA
125660475 AAAAGAAAAACCT-ACCC
1 AAAA-AAAAACCTAACCC
125660492 -AAAAAAAACCTAACCC
1 AAAAAAAAACCTAACCC
125660508 AAAAAAAAA
1 AAAAAAAAA
125660517 AAGAAGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 8 0.35
16 7 0.30
17 8 0.35
ACGTcount: A:0.69, C:0.24, G:0.02, T:0.05
Consensus pattern (17 bp):
AAAAAAAAACCTAACCC
Found at i:125661162 original size:21 final size:20
Alignment explanation
Indices: 125661120--125661174 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
125661110 TTGTTATCAC
* *
125661120 TATTATTTTATATATTGTTAT
1 TATTATATTATAT-TTGCTAT
125661141 TATTATATTATATTTAGCTAT
1 TATTATATTATATTT-GCTAT
125661162 TA-TATA-TATATTT
1 TATTATATTATATTT
125661175 TCTTTATGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 7 0.23
20 6 0.19
21 18 0.58
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.62
Consensus pattern (20 bp):
TATTATATTATATTTGCTAT
Found at i:125661344 original size:11 final size:11
Alignment explanation
Indices: 125661326--125661355 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
125661316 GTGTATATTG
125661326 TATATATTATA
1 TATATATTATA
*
125661337 TTTATATTATA
1 TATATATTATA
125661348 TATATATT
1 TATATATT
125661356 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:125669379 original size:35 final size:35
Alignment explanation
Indices: 125669314--125669479 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
125669304 TCCTCATTGA
** *
125669314 AATACCATACCTACATTT-TTAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
125669348 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
125669388 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
125669423 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
125669458 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
125669480 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
34 17 0.14
35 71 0.60
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:125669438 original size:75 final size:72
Alignment explanation
Indices: 125669309--125669481 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 72
125669299 GGTTTTCCTC
* * * **
125669309 ATTGAAATACCATACCTACATTTTTA-ACTCGGTATGGGAAATGCCATACCTACATTTCTTAACT
1 ATTGAAATACCATACCTACA-TTTCACACTCAGTATGGGAAATACCATACCTACATTTCACAACT
125669373 CAGTATGG
65 CAGTATGG
125669381 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACA-CTCAGTATGGGA-AATACCATACCTACATTTCACA
125669445 ACTCAGTATGG
62 ACTCAGTATGG
125669456 A-TG--ATACCATACCTACATTTCACACT
1 ATTGAAATACCATACCTACATTTCACACT
125669482 TTGCCATGGA
Statistics
Matches: 91, Mismatches: 5, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
69 2 0.02
70 21 0.23
72 1 0.01
73 10 0.11
74 19 0.21
75 38 0.42
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (72 bp):
ATTGAAATACCATACCTACATTTCACACTCAGTATGGGAAATACCATACCTACATTTCACAACTC
AGTATGG
Found at i:125671796 original size:24 final size:24
Alignment explanation
Indices: 125671767--125671812 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
125671757 CAAAAATGAC
125671767 AATAATGATGAAAACGATAATAAT
1 AATAATGATGAAAACGATAATAAT
* * *
125671791 AATAATGTTGATAATGATAATA
1 AATAATGATGAAAACGATAATA
125671813 GTGGTGGTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.54, C:0.02, G:0.13, T:0.30
Consensus pattern (24 bp):
AATAATGATGAAAACGATAATAAT
Found at i:125672217 original size:23 final size:23
Alignment explanation
Indices: 125672171--125672218 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
125672161 TAAAAGAGGG
*
125672171 AAATATAATAACAATAATAATAA
1 AAATATAATAACAATAACAATAA
** *
125672194 AAATATAATAGTAATAACAGTAA
1 AAATATAATAACAATAACAATAA
125672217 AA
1 AA
125672219 GGTGTAACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (23 bp):
AAATATAATAACAATAACAATAA
Found at i:125672303 original size:28 final size:27
Alignment explanation
Indices: 125672223--125672312 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 27
125672213 GTAAAAGGTG
**
125672223 TAAC-AATATAATAAT-ATGATGGTAA
1 TAACAAATATAATAATAATGATAATAA
* *
125672248 TAA-AAATACAATAATAAT-ATATTAAA
1 TAACAAATATAATAATAATGATAAT-AA
125672274 TAACAAATAATAATAATAATGATAATAA
1 TAACAAAT-ATAATAATAATGATAATAA
*
125672302 TATAGAAATAT
1 TA-ACAAATAT
125672313 GAAAAGAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
25 16 0.31
26 7 0.13
27 4 0.08
28 16 0.31
29 9 0.17
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (27 bp):
TAACAAATATAATAATAATGATAATAA
Found at i:125672378 original size:14 final size:14
Alignment explanation
Indices: 125672359--125672395 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
125672349 AAAAATTACT
125672359 ATATATATATATAC
1 ATATATATATATAC
*
125672373 ATATATCTATATAC
1 ATATATATATATAC
125672387 ATATATATA
1 ATATATATA
125672396 AAAACAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (14 bp):
ATATATATATATAC
Found at i:125673918 original size:11 final size:13
Alignment explanation
Indices: 125673901--125673933 Score: 52
Period size: 11 Copynumber: 2.7 Consensus size: 13
125673891 TTTGGGTCGG
125673901 GGTTATTTGGG-A
1 GGTTATTTGGGTA
125673913 -GTTATTTGGGTA
1 GGTTATTTGGGTA
125673925 GGTTATTTG
1 GGTTATTTG
125673934 TTTTGGGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.53
12 1 0.05
13 8 0.42
ACGTcount: A:0.15, C:0.00, G:0.36, T:0.48
Consensus pattern (13 bp):
GGTTATTTGGGTA
Found at i:125673940 original size:18 final size:18
Alignment explanation
Indices: 125673917--125673958 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
125673907 TTGGGAGTTA
125673917 TTTGGGTAGGTTATTTGT
1 TTTGGGTAGGTTATTTGT
125673935 TTTGGGTAGGTTATTTGT
1 TTTGGGTAGGTTATTTGT
125673953 TTTGGG
1 TTTGGG
125673959 CCCAAAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.10, C:0.00, G:0.36, T:0.55
Consensus pattern (18 bp):
TTTGGGTAGGTTATTTGT
Found at i:125675019 original size:19 final size:18
Alignment explanation
Indices: 125674975--125675026 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
125674965 AAAATTACAA
*
125674975 AAAAATTCAAAAGAATTTT
1 AAAAATTCAAAA-TATTTT
* *
125674994 TATAATTCAAAATATTTAT
1 AAAAATTCAAAATATTT-T
125675013 AAAAATTTCAAAAT
1 AAAAA-TTCAAAAT
125675027 TTATATTTTC
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
18 4 0.15
19 14 0.54
20 8 0.31
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (18 bp):
AAAAATTCAAAATATTTT
Found at i:125678499 original size:15 final size:14
Alignment explanation
Indices: 125678489--125678618 Score: 163
Period size: 14 Copynumber: 9.0 Consensus size: 14
125678479 AAAAAAAATT
125678489 TTCCAGCAAAAAAA
1 TTCCAGCAAAAAAA
125678503 TTCCAGCAGCAAAAAAA
1 TT-C--CAGCAAAAAAA
125678520 TTCCAGCAAAAAAA
1 TTCCAGCAAAAAAA
*
125678534 TTTTCAGC-AAAAAA
1 -TTCCAGCAAAAAAA
125678548 TTCCAGCAAAAAAA
1 TTCCAGCAAAAAAA
* *
125678562 TTCTAGCCAAAAAA
1 TTCCAGCAAAAAAA
*
125678576 TTTCAGCAAAGAAAA
1 TTCCAGCAAA-AAAA
*
125678591 TTCCAGCAAAAAAT
1 TTCCAGCAAAAAAA
125678605 TTCCAGCAAAAAAA
1 TTCCAGCAAAAAAA
125678619 AACCAAAAAA
Statistics
Matches: 100, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
13 6 0.06
14 60 0.60
15 20 0.20
16 1 0.01
17 13 0.13
ACGTcount: A:0.54, C:0.20, G:0.08, T:0.18
Consensus pattern (14 bp):
TTCCAGCAAAAAAA
Found at i:125678629 original size:28 final size:28
Alignment explanation
Indices: 125678477--125678629 Score: 123
Period size: 28 Copynumber: 5.3 Consensus size: 28
125678467 AAAGGGGAAG
125678477 CAAAAAAAAATTTTCCAGCAAAAAAATTC
1 CAAAAAAAAA-TTTCCAGCAAAAAAATTC
*
125678506 CAGCAGCAAAAAAA-TTCCAGCAAAAAAATTTT
1 CA--A--AAAAAAATTTCCAGCAAAAAAA-TTC
**
125678538 CAGCAAAAAA-TTCCAGCAAAAAAATTC
1 CAAAAAAAAATTTCCAGCAAAAAAATTC
* **
125678565 TAGCCAAAAAATTT-CAGCAAAGAAAATTC
1 CA-AAAAAAAATTTCCAGCAAA-AAAATTC
** **
125678594 CAGCAAAAAATTTCCAGCAAAAAAAAAC
1 CAAAAAAAAATTTCCAGCAAAAAAATTC
125678622 CAAAAAAA
1 CAAAAAAA
125678630 GGAACATTTA
Statistics
Matches: 103, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
27 3 0.03
28 55 0.53
29 19 0.18
31 15 0.15
32 4 0.04
33 7 0.07
ACGTcount: A:0.58, C:0.19, G:0.07, T:0.16
Consensus pattern (28 bp):
CAAAAAAAAATTTCCAGCAAAAAAATTC
Found at i:125679112 original size:31 final size:34
Alignment explanation
Indices: 125679044--125679116 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 34
125679034 GGGTGACATG
* *
125679044 TTAAGTTAGTGGGTTGGGTTGGTTGTGTTGGGTTTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGTT--GATTA
*
125679080 TTAAGTTAGTGAGTTGGGTTGGTT-TGTATTATTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGT-TGATTA
125679114 TTA
1 TTA
125679117 TTATTTTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 6 0.18
35 3 0.09
36 24 0.73
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.49
Consensus pattern (34 bp):
TTAAGTTAGTGAGTTGGGTTGGTTGTGTTGATTA
Found at i:125683231 original size:14 final size:14
Alignment explanation
Indices: 125683209--125683252 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
125683199 GACAGTCATG
*
125683209 AAAAGAAAAAG-AA
1 AAAAAAAAAAGAAA
125683222 AAAAAAAAAAGAAA
1 AAAAAAAAAAGAAA
*
125683236 AAAACAAAAAGAAA
1 AAAAAAAAAAGAAA
125683250 AAA
1 AAA
125683253 GGACAAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
13 10 0.36
14 18 0.64
ACGTcount: A:0.89, C:0.02, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAGAAA
Found at i:125683244 original size:27 final size:27
Alignment explanation
Indices: 125683209--125683272 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
125683199 GACAGTCATG
*
125683209 AAAAGAAAAAGAAAAAAAAAAAAGAAA
1 AAAACAAAAAGAAAAAAAAAAAAGAAA
** *
125683236 AAAACAAAAAGAAAAAAGGACAAGAAA
1 AAAACAAAAAGAAAAAAAAAAAAGAAA
125683263 AAAACAAAAA
1 AAAACAAAAA
125683273 AAGAAATCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.84, C:0.05, G:0.11, T:0.00
Consensus pattern (27 bp):
AAAACAAAAAGAAAAAAAAAAAAGAAA
Found at i:125683264 original size:14 final size:13
Alignment explanation
Indices: 125683209--125683272 Score: 74
Period size: 13 Copynumber: 4.8 Consensus size: 13
125683199 GACAGTCATG
*
125683209 AAAAGAAAAAGAA
1 AAAAAAAAAAGAA
125683222 AAAAAAAAAAGAA
1 AAAAAAAAAAGAA
125683235 AAAAACAAAAAGAA
1 AAAAA-AAAAAGAA
** *
125683249 AAAAGGACAAGAA
1 AAAAAAAAAAGAA
125683262 AAAAACAAAAA
1 AAAAA-AAAAA
125683273 AAGAAATCAA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
13 27 0.64
14 15 0.36
ACGTcount: A:0.84, C:0.05, G:0.11, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:125685847 original size:217 final size:217
Alignment explanation
Indices: 125685460--125687060 Score: 2725
Period size: 217 Copynumber: 7.4 Consensus size: 217
125685450 TGATGCTTTT
*
125685460 ATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
*
125685524 TAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
125685588 CGTTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
130 CGTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
125685653 TCAAGACACGTTGAGGTAATTTCA
194 TCAAGACACGTTGAGGTAATTTCA
* * *
125685677 ATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
* *
125685742 AATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
* * * *
125685806 ATTAAGGTATTTTCAATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
131 GTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
125685871 CAAGACACGTTGAGGTAATTTCA
195 CAAGACACGTTGAGGTAATTTCA
* *
125685894 ATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
* *
125685959 AATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
* *
125686023 GTTAAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTC
131 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
*
125686088 AAGACACGTTAAGGTAATTTCA
196 AAGACACGTTGAGGTAATTTCA
*
125686110 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAG-AA--A--TGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
* *
125686170 ATTTTTAATTTCTGCTTTTCAAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
125686235 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTC
131 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
125686300 AAGACACGTTGAGGTAATTTCA
196 AAGACACGTTGAGGTAATTTCA
*
125686322 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
* * *
125686387 ATTTTCAATTTTTGCTTTTCAAAATTCAACTTATTTTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
* *
125686452 GTTGAGGTAATTTTAATTTATGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
131 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
125686517 AAGACACGTTGAGGTAATTTCA
196 AAGACACGTTGAGGTAATTTCA
* *
125686539 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACATTGAAGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
*
125686604 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATACTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
* *
125686669 GTTGAGGTAATTTCAATTTATGTTTTCAAAAGTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
131 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
125686734 AAGACACGTTGAGGTAATTTCA
196 AAGACACGTTGAGGTAATTTCA
* *
125686756 ATTTCTATTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
125686821 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
* *
125686886 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAATTCATATTGCGAGAAATGAGTTGAACCTC
131 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
125686951 AAGACACGTTGAGGTAATTTCA
196 AAGACACGTTGAGGTAATTTCA
* *
125686973 ATTTTTGTTTTCAAAATTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
** *
125687038 ATTTTCAAAATCTGCATTTCAAA
66 ATTTTCAATTTCTGCTTTTCAAA
125687061 TTAAGTTTCA
Statistics
Matches: 1327, Mismatches: 50, Indels: 14
0.95 0.04 0.01
Matches are distributed among these distances:
211 34 0.03
212 167 0.13
213 3 0.00
215 3 0.00
216 95 0.07
217 1021 0.77
218 4 0.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (217 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
AAGACACGTTGAGGTAATTTCA
Found at i:125687060 original size:145 final size:144
Alignment explanation
Indices: 125685460--125687045 Score: 2671
Period size: 145 Copynumber: 11.0 Consensus size: 144
125685450 TGATGCTTTT
125685460 ATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
125685524 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
65 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
125685589 GTTGAGGTATTTTCA
130 GTTGAGGTAATTTCA
125685604 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
125685669 TAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
65 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
125685734 GTTAAGGTAATTTCA
130 GTTGAGGTAATTTCA
* * *
125685749 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACATTAAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
125685814 ATTTTCAATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 AATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
125685879 GTTGAGGTAATTTCA
130 GTTGAGGTAATTTCA
*
125685894 ATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
125685959 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACG
66 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
*
125686024 TTAAGGTAATTTCA
131 TTGAGGTAATTTCA
* *
125686038 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
125686103 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGTGAG-AA--A--TGAGCCTCAAGACACA
66 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* *
125686163 TTGAGGTATTTTTA
131 TTGAGGTAATTTCA
*
125686177 ATTTCTGCTTTTCAAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
125686242 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACAC
65 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
125686307 GTTGAGGTAATTTCA
130 GTTGAGGTAATTTCA
* *
125686322 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* * * *
125686387 ATTTTCAATTTTTGCTTTTCAAAATTCAACTTATTTTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 AATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
125686452 GTTGAGGTAATTTTA
130 GTTGAGGTAATTTCA
*
125686467 ATTTATGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
125686532 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACA
66 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* *
125686597 TTGAAGTATTTTCA
131 TTGAGGTAATTTCA
*
125686611 ATTTCTGCTTTTCAAAATTCAACTCATACTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* *
125686676 TAATTTCAATTTATGTTTTCAAAAGTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
65 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
125686741 GTTGAGGTAATTTCA
130 GTTGAGGTAATTTCA
* * *
125686756 ATTTCTATTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
125686821 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 AATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
125686886 GTTGAGGTAATTTCA
130 GTTGAGGTAATTTCA
* *
125686901 ATTTCTGTTTTCAAAATTCAATTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* * *
125686966 AATTTCAATTTTTGTTTTCAAAATTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACA
66 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
*
125687031 TTGAGGTATTTTCA
131 TTGAGGTAATTTCA
125687045 A
1 A
125687046 AATCTGCATT
Statistics
Matches: 1353, Mismatches: 77, Indels: 24
0.93 0.05 0.02
Matches are distributed among these distances:
139 33 0.02
140 96 0.07
141 3 0.00
143 3 0.00
144 500 0.37
145 714 0.53
146 4 0.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (144 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGGTAATTTCA
Found at i:125687062 original size:72 final size:72
Alignment explanation
Indices: 125685460--125687045 Score: 2671
Period size: 72 Copynumber: 22.0 Consensus size: 72
125685450 TGATGCTTTT
125685460 ATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
125685524 TAATTTCA
65 TAATTTCA
125685532 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
125685597 ATTTTCA
66 AATTTCA
125685604 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
125685669 TAATTTCA
65 TAATTTCA
* *
125685677 ATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
125685742 AATTTCA
66 AATTTCA
* * *
125685749 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACATTAAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
125685814 ATTTTCA
66 AATTTCA
*
125685821 ATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
125685886 TAATTTCA
65 TAATTTCA
*
125685894 ATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
125685959 AATTTCA
66 AATTTCA
* *
125685966 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
125686031 AATTTCA
66 AATTTCA
* *
125686038 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
125686103 AATTTCA
66 AATTTCA
* *
125686110 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAG-AA--A--TGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
125686170 ATTTTTA
66 AATTTCA
*
125686177 ATTTCTGCTTTTCAAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
125686242 TAATTTCA
65 TAATTTCA
*
125686250 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
125686315 AATTTCA
66 AATTTCA
* *
125686322 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
125686387 ATTTTCA
66 AATTTCA
* * *
125686394 ATTTTTGCTTTTCAAAATTCAACTTATTTTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
125686459 TAATTTTA
65 TAATTTCA
*
125686467 ATTTATGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
125686532 AATTTCA
66 AATTTCA
* * *
125686539 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACATTGAAGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
125686604 ATTTTCA
66 AATTTCA
*
125686611 ATTTCTGCTTTTCAAAATTCAACTCATACTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
125686676 TAATTTCA
65 TAATTTCA
* *
125686684 ATTTATGTTTTCAAAAGTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
125686749 AATTTCA
66 AATTTCA
* * *
125686756 ATTTCTATTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
125686821 ATTTTCA
66 AATTTCA
125686828 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
125686893 TAATTTCA
65 TAATTTCA
* *
125686901 ATTTCTGTTTTCAAAATTCAATTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
125686966 AATTTCA
66 AATTTCA
* * *
125686973 ATTTTTGTTTTCAAAATTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
125687038 ATTTTCA
66 AATTTCA
125687045 A
1 A
125687046 AATCTGCATT
Statistics
Matches: 1429, Mismatches: 73, Indels: 24
0.94 0.05 0.02
Matches are distributed among these distances:
67 33 0.02
68 25 0.02
69 3 0.00
71 3 0.00
72 991 0.69
73 374 0.26
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (72 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
AATTTCA
Found at i:125687201 original size:53 final size:54
Alignment explanation
Indices: 125687072--125687215 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
125687062 TAAGTTTCAA
* *
125687072 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTATTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTAGTTTTC
* *
125687126 AAAAATCAACTCATATTGCGAGAGATGGGTTGAGCCTTTTAATTTCT-GTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTAGTTTTC
*
125687179 AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
125687216 CGGGTCACAT
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 39 0.47
54 44 0.53
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (54 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTAGTTTTC
Found at i:125687311 original size:89 final size:88
Alignment explanation
Indices: 125687173--125687393 Score: 286
Period size: 89 Copynumber: 2.5 Consensus size: 88
125687163 TTTAATTTCT
* * *
125687173 GTTTTC-AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTAT
1 GTTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCACATGCT-GAGGTAT
125687236 TTTCAAAATCTGCTTTTCAAATTAA
65 TTTCAAAATCTG-TTTTCAAATTAA
* * *
125687261 G-TTTCAAAAAAATCAACTCATATTGCTAGAGGTAAGTTGAGTCTCAGGTCACATGCTGAGGTAT
1 GTTTTC-AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCACATGCTGAGGTAT
** * * *
125687325 TTTCAATTTTTGTTTTCAATTTAT
65 TTTCAAAATCTGTTTTCAAATTAA
125687349 GTTTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
1 G-TTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
125687394 TTTAATTCCT
Statistics
Matches: 115, Mismatches: 13, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
87 4 0.03
88 12 0.10
89 94 0.82
90 5 0.04
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (88 bp):
GTTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCACATGCTGAGGTATT
TTCAAAATCTGTTTTCAAATTAA
Found at i:125687357 original size:14 final size:13
Alignment explanation
Indices: 125687324--125687353 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
125687314 TGCTGAGGTA
*
125687324 TTTTCAATTTTTG
1 TTTTCAATTTATG
125687337 TTTTCAATTTATG
1 TTTTCAATTTATG
125687350 TTTT
1 TTTT
125687354 TCAAAAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.70
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:125687455 original size:339 final size:337
Alignment explanation
Indices: 125687072--125687728 Score: 1116
Period size: 339 Copynumber: 1.9 Consensus size: 337
125687062 TAAGTTTCAA
125687072 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTATTTTTCAAAAATCAACT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTATTTTTCAAAAATCAACT
125687137 CATATTGCGAGAGATGGGTTGAGCCTTTTAATTTCTGTTTTCAAAAATCAATTCATATTGCGAGA
66 CATATTGCGAGAGATGGGTTGAGCCTTTTAATTTCTGTTTTCAAAAATCAATTCATATTGCGAGA
125687202 GGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCA
131 GGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCA
* * * * * *
125687267 AAAAAATCAACTCATATTGCTAGAGGTAAGTTGAGTCTCAGGTCACATGCTGAGGTATTTTCAAT
196 AAAAAATCAACTCACATTGCGAGAAGTAAGTTGAGCCTCAGCTCACATGCTGAGCTATTTTCAAT
* * **
125687332 TTTTGTTTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTTT
261 TTCTGTTTT-AATGTATGTTTTT-AAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTTTT
125687397 AATTCCTGTTTTTC
324 AATTCCTGTTTTTC
*
125687411 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTGTTTTTCAAAAATCAACT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTATTTTTCAAAAATCAACT
125687476 CATATTGCGAGAGATGGGTTGAGCCTTTTAATTTCTGTTTTCAAAAATCAATTCATATTGCGAGA
66 CATATTGCGAGAGATGGGTTGAGCCTTTTAATTTCTGTTTTCAAAAATCAATTCATATTGCGAGA
125687541 GGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCA
131 GGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCA
* * * **
125687606 AAAAGATCAACTCACATTGCGAGAAGTGAGTTGAGCCTTAGCTCATGTGCTGAGCTATTTTCAAT
196 AAAAAATCAACTCACATTGCGAGAAGTAAGTTGAGCCTCAGCTCACATGCTGAGCTATTTTCAAT
* * * *
125687671 TTCTGTTTTAATGTCTGTTTTTAAAGAATCAATTCATATTGCGAGAAATGAGTTGAGC
261 TTCTGTTTTAATGTATGTTTTTAAAAAATCAACTCATATTGCAAGAAATGAGTTGAGC
125687729 TCAAGATCAC
Statistics
Matches: 298, Mismatches: 20, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
337 31 0.10
338 11 0.04
339 256 0.86
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (337 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTATTTTTCAAAAATCAACT
CATATTGCGAGAGATGGGTTGAGCCTTTTAATTTCTGTTTTCAAAAATCAATTCATATTGCGAGA
GGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCA
AAAAAATCAACTCACATTGCGAGAAGTAAGTTGAGCCTCAGCTCACATGCTGAGCTATTTTCAAT
TTCTGTTTTAATGTATGTTTTTAAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTTTTAA
TTCCTGTTTTTC
Found at i:125687540 original size:53 final size:54
Alignment explanation
Indices: 125687337--125687554 Score: 348
Period size: 54 Copynumber: 4.0 Consensus size: 54
125687327 TCAATTTTTG
* *
125687337 TTTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
1 TTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
125687393 TTTTAATTCCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
125687447 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGGGTTGAGCC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
125687501 TTTTAATTTCTG-TTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
125687554 T
1 T
125687555 CGGGTCACAT
Statistics
Matches: 151, Mismatches: 11, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
53 39 0.26
54 96 0.64
55 12 0.08
56 4 0.03
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (54 bp):
TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
Found at i:125688170 original size:25 final size:25
Alignment explanation
Indices: 125688136--125688183 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
125688126 AAAAGTCTTT
125688136 ACTCTATTCTCGTTACACGACAACA
1 ACTCTATTCTCGTTACACGACAACA
*
125688161 ACTCTGTTCTCGTTACACGACAA
1 ACTCTATTCTCGTTACACGACAA
125688184 TAAGTAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.29
Consensus pattern (25 bp):
ACTCTATTCTCGTTACACGACAACA
Found at i:125688605 original size:15 final size:14
Alignment explanation
Indices: 125688587--125688668 Score: 101
Period size: 14 Copynumber: 5.5 Consensus size: 14
125688577 GGGAAGCAAA
*
125688587 AAAAAAATTTTCAGC
1 AAAAAAA-TTCCAGC
125688602 AAAAAAATTCCAGCAGC
1 AAAAAAATT-C--CAGC
125688619 AAAAAAATTCCAGC
1 AAAAAAATTCCAGC
125688633 AAAGAAAATTCCAGC
1 AAA-AAAATTCCAGC
*
125688648 AAAAAATTTCCAGC
1 AAAAAAATTCCAGC
125688662 AAAAAAA
1 AAAAAAA
125688669 AACCAAAAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 9
0.83 0.04 0.12
Matches are distributed among these distances:
14 25 0.42
15 21 0.35
16 1 0.02
17 13 0.22
ACGTcount: A:0.57, C:0.18, G:0.09, T:0.16
Consensus pattern (14 bp):
AAAAAAATTCCAGC
Found at i:125688618 original size:17 final size:17
Alignment explanation
Indices: 125688598--125688648 Score: 79
Period size: 17 Copynumber: 3.1 Consensus size: 17
125688588 AAAAAATTTT
125688598 CAGCAAAAAAATTCCAG
1 CAGCAAAAAAATTCCAG
125688615 CAGCAAAAAAATTCCAG
1 CAGCAAAAAAATTCCAG
*
125688632 CA--AAGAAAATTCCAG
1 CAGCAAAAAAATTCCAG
125688647 CA
1 CA
125688649 AAAAATTTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
15 14 0.42
17 19 0.58
ACGTcount: A:0.53, C:0.24, G:0.12, T:0.12
Consensus pattern (17 bp):
CAGCAAAAAAATTCCAG
Found at i:125688670 original size:17 final size:15
Alignment explanation
Indices: 125688586--125688669 Score: 100
Period size: 15 Copynumber: 5.5 Consensus size: 15
125688576 GGGGAAGCAA
*
125688586 AAAAAAAATTTTCAGC
1 AAAAAAAA-TTCCAGC
125688602 -AAAAAAATTCCAGC
1 AAAAAAAATTCCAGC
125688616 AGCAAAAAAATTCCAGC
1 A--AAAAAAATTCCAGC
*
125688633 AAAGAAAATTCCAGC
1 AAAAAAAATTCCAGC
*
125688648 -AAAAAATTTCCAGC
1 AAAAAAAATTCCAGC
125688662 AAAAAAAA
1 AAAAAAAA
125688670 ACCAAAAAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
14 18 0.31
15 26 0.44
17 15 0.25
ACGTcount: A:0.58, C:0.18, G:0.08, T:0.15
Consensus pattern (15 bp):
AAAAAAAATTCCAGC
Found at i:125689161 original size:31 final size:34
Alignment explanation
Indices: 125689093--125689165 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 34
125689083 GGGTGATATG
* *
125689093 TTAAGTTAGTGGGTTGGGTTGGTTGTGTTGGGTTTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGTT--GATTA
*
125689129 TTAAGTTAGTGAGTTGGGTTGGTT-TGTATTATTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGT-TGATTA
125689163 TTA
1 TTA
125689166 TTATTTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 6 0.18
35 3 0.09
36 24 0.73
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.49
Consensus pattern (34 bp):
TTAAGTTAGTGAGTTGGGTTGGTTGTGTTGATTA
Found at i:125689834 original size:16 final size:17
Alignment explanation
Indices: 125689791--125689835 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 17
125689781 AAAATTCAGG
125689791 TTTCAAAAATTTTCGTGT
1 TTTC-AAAATTTTCGTGT
125689809 TTTCAAAATTTTCGTGT
1 TTTCAAAATTTTCGTGT
125689826 TTT-AAAATTT
1 TTTCAAAATTT
125689836 CTCATTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 7 0.26
17 16 0.59
18 4 0.15
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (17 bp):
TTTCAAAATTTTCGTGT
Found at i:125690898 original size:22 final size:23
Alignment explanation
Indices: 125690870--125690912 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
125690860 AAGGGGTGAC
* *
125690870 TTAAATG-TTCAATTTTAATTAG
1 TTAAATGATTAAATTATAATTAG
125690892 TTAAATGATTAAATTATAATT
1 TTAAATGATTAAATTATAATT
125690913 TTTCAGAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (23 bp):
TTAAATGATTAAATTATAATTAG
Found at i:125691251 original size:12 final size:12
Alignment explanation
Indices: 125691236--125691274 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
125691226 CATATTAATA
*
125691236 TATATATATATT
1 TATATATATACT
*
125691248 TATATTTATACT
1 TATATATATACT
125691260 TATATATATACT
1 TATATATATACT
125691272 TAT
1 TAT
125691275 TAATAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (12 bp):
TATATATATACT
Found at i:125692372 original size:21 final size:21
Alignment explanation
Indices: 125692329--125692375 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
125692319 TTTATATGTA
*
125692329 TTTTATAATTTTTTTAATATT
1 TTTTATAATTTTTTAAATATT
*
125692350 TTTTAT-ATTTTTTAAAGTTTT
1 TTTTATAATTTTTTAAA-TATT
125692371 TTTTA
1 TTTTA
125692376 GTTTTGTACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (21 bp):
TTTTATAATTTTTTAAATATT
Found at i:125692380 original size:19 final size:19
Alignment explanation
Indices: 125692339--125692380 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
125692329 TTTTATAATT
*
125692339 TTTTTAATATTTTTTATAT
1 TTTTTAATATTTTTTATAG
*
125692358 TTTTTAA-AGTTTTTTTTAG
1 TTTTTAATA-TTTTTTATAG
125692377 TTTT
1 TTTT
125692381 GTACTAATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (19 bp):
TTTTTAATATTTTTTATAG
Found at i:125692486 original size:14 final size:15
Alignment explanation
Indices: 125692459--125692494 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
125692449 GAAAATATTT
125692459 TATTTTTATAAAAAA
1 TATTTTTATAAAAAA
*
125692474 TATTTTT-TTAAAAA
1 TATTTTTATAAAAAA
125692488 TATTTTT
1 TATTTTT
125692495 GTTGATATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TATTTTTATAAAAAA
Found at i:125693051 original size:14 final size:16
Alignment explanation
Indices: 125693031--125693071 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
125693021 ATTAAATTAT
125693031 TAAAATA-ATTTAATA
1 TAAAATATATTTAATA
*
125693046 -AAAATATTTTTAATA
1 TAAAATATATTTAATA
125693061 TAAAA-ATATTT
1 TAAAATATATTT
125693072 TCATTCACCC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 6 0.27
15 12 0.55
16 4 0.18
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TAAAATATATTTAATA
Found at i:125705576 original size:22 final size:22
Alignment explanation
Indices: 125705529--125705583 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
125705519 ATATTGTATC
* * *
125705529 AAAAAGAATAGAAATGAACATA
1 AAAAAGAATAAAAAAGAACAAA
*
125705551 AAAAAGAATAAAAAAGAAAAAGAA
1 AAAAAGAATAAAAAAG-AACA-AA
125705575 AAAAAGAAT
1 AAAAAGAAT
125705584 GTCTAAGTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 14 0.52
23 3 0.11
24 10 0.37
ACGTcount: A:0.76, C:0.02, G:0.13, T:0.09
Consensus pattern (22 bp):
AAAAAGAATAAAAAAGAACAAA
Found at i:125705879 original size:16 final size:15
Alignment explanation
Indices: 125705838--125705880 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
125705828 CATTAAATAT
125705838 AATTATTATTTGAGAA
1 AATTATTA-TTGAGAA
*
125705854 AATTTTTTATTGAGAA
1 AA-TTATTATTGAGAA
125705870 CAATTATTATT
1 -AATTATTATT
125705881 TAAAATAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (15 bp):
AATTATTATTGAGAA
Found at i:125711990 original size:2 final size:2
Alignment explanation
Indices: 125711983--125712019 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
125711973 TTGAAACCAT
125711983 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
125712020 ACTATTATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:125712456 original size:20 final size:19
Alignment explanation
Indices: 125712433--125712486 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
125712423 TTTTTTTATA
125712433 TAATAATATTATTTTAATTT
1 TAATAATATTATTTT-ATTT
125712453 TAATACATA-TATTTTATTT
1 TAATA-ATATTATTTTATTT
*
125712472 TCAA-AATATAATTTT
1 T-AATAATATTATTTT
125712487 CTGTCATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 3 0.10
19 11 0.37
20 13 0.43
21 3 0.10
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.56
Consensus pattern (19 bp):
TAATAATATTATTTTATTT
Found at i:125713241 original size:4 final size:4
Alignment explanation
Indices: 125713227--125713290 Score: 110
Period size: 4 Copynumber: 16.0 Consensus size: 4
125713217 AAAAGAAAAA
* *
125713227 ACAT GCAT ACAT ACAT ACAT ACAG ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
125713275 ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT
125713291 TGTATATGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 56 1.00
ACGTcount: A:0.48, C:0.25, G:0.03, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:125713712 original size:6 final size:6
Alignment explanation
Indices: 125713701--125713739 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
125713691 TGCATGGTGG
* * *
125713701 TGCCAT TGCCAT TGCCAT TGCAAT TGCAAT TGGCAT TGC
1 TGCCAT TGCCAT TGCCAT TGCCAT TGCCAT TGCCAT TGC
125713740 AAAGAGACCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.33
Consensus pattern (6 bp):
TGCCAT
Found at i:125715681 original size:20 final size:20
Alignment explanation
Indices: 125715658--125715698 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
125715648 TGCAGAATCC
125715658 AGCTTCAAAACATAGAATTT
1 AGCTTCAAAACATAGAATTT
125715678 AGCTTCAAAACATAGAATTT
1 AGCTTCAAAACATAGAATTT
125715698 A
1 A
125715699 CCTGAAAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.29
Consensus pattern (20 bp):
AGCTTCAAAACATAGAATTT
Found at i:125716097 original size:37 final size:38
Alignment explanation
Indices: 125716017--125716109 Score: 109
Period size: 37 Copynumber: 2.5 Consensus size: 38
125716007 CACCACTTCG
* * *
125716017 TCCACCCTGCACACCACATAAGGACTATAGTAGGCTCG
1 TCCACCCTGCACACCACATAAGAACCATAGTAGGCTCA
*
125716055 TCCACCCTGCACACCACAT-AGAACCAT-GATAGGCTTA
1 TCCACCCTGCACACCACATAAGAACCATAG-TAGGCTCA
* *
125716092 TCCACCCTACACGCCACA
1 TCCACCCTGCACACCACA
125716110 ATGTGGAACT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
36 1 0.02
37 28 0.58
38 19 0.40
ACGTcount: A:0.30, C:0.39, G:0.14, T:0.17
Consensus pattern (38 bp):
TCCACCCTGCACACCACATAAGAACCATAGTAGGCTCA
Found at i:125716797 original size:21 final size:21
Alignment explanation
Indices: 125716771--125716838 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
125716761 TAGACAGGCC
*
125716771 ACACGGACATGTGGCTAAGGG
1 ACACGGACATGTGGCCAAGGG
* * *
125716792 ACACGGTCGTGTGTCCAAGGG
1 ACACGGACATGTGGCCAAGGG
* * * *
125716813 ACACGGTCGTGTGTCCAAGGC
1 ACACGGACATGTGGCCAAGGG
125716834 ACACG
1 ACACG
125716839 CCCGTGTGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.24, C:0.25, G:0.35, T:0.16
Consensus pattern (21 bp):
ACACGGACATGTGGCCAAGGG
Found at i:125716844 original size:21 final size:21
Alignment explanation
Indices: 125716799--125716846 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
125716789 GGGACACGGT
* **
125716799 CGTGTGTCCAAGGGACACGGT
1 CGTGTGTCCAAGGCACACGCC
125716820 CGTGTGTCCAAGGCACACGCC
1 CGTGTGTCCAAGGCACACGCC
125716841 CGTGTG
1 CGTGTG
125716847 AAAATCGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.29, G:0.35, T:0.19
Consensus pattern (21 bp):
CGTGTGTCCAAGGCACACGCC
Found at i:125718687 original size:19 final size:20
Alignment explanation
Indices: 125718641--125718681 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
125718631 AAAAGCAGGG
125718641 AAAGAAAGAAAGAAAGGAGA
1 AAAGAAAGAAAGAAAGGAGA
125718661 AAAGAAAG-AAGAAAGG-GA
1 AAAGAAAGAAAGAAAGGAGA
125718679 AAA
1 AAA
125718682 TTAAAGGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.24
19 8 0.38
20 8 0.38
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (20 bp):
AAAGAAAGAAAGAAAGGAGA
Found at i:125719527 original size:19 final size:19
Alignment explanation
Indices: 125719501--125719552 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
125719491 TAATGTAAAG
125719501 TTAACTGAAATATATAT-A
1 TTAACTGAAATATATATGA
125719519 TTGAACTGAAAATATATATGA
1 TT-AACTG-AAATATATATGA
*
125719540 TTAGCTGAAATAT
1 TTAACTGAAATAT
125719553 GTACTGAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 2 0.07
19 11 0.37
20 14 0.47
21 3 0.10
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.37
Consensus pattern (19 bp):
TTAACTGAAATATATATGA
Found at i:125719955 original size:18 final size:18
Alignment explanation
Indices: 125719932--125719995 Score: 76
Period size: 18 Copynumber: 3.6 Consensus size: 18
125719922 TAAATAAATG
* *
125719932 TACTGAATAATTAACTAT
1 TACTGAATAATTGACTGT
*
125719950 TACTGAA-AGACTGACTGT
1 TACTGAATA-ATTGACTGT
*
125719968 TACTGAATAATTGACCGT
1 TACTGAATAATTGACTGT
125719986 TACTGAATAA
1 TACTGAATAA
125719996 CCGATTGCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
17 1 0.03
18 37 0.95
19 1 0.03
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (18 bp):
TACTGAATAATTGACTGT
Found at i:125719979 original size:36 final size:36
Alignment explanation
Indices: 125719932--125720029 Score: 99
Period size: 36 Copynumber: 2.7 Consensus size: 36
125719922 TAAATAAATG
* *
125719932 TACTGAATAATTAACTATTACTGAA-AGACTGACTGT
1 TACTGAATAATTAACTATTACTGAATA-ACCGACTGC
* ** *
125719968 TACTGAATAATTGACCGTTACTGAATAACCGATTGC
1 TACTGAATAATTAACTATTACTGAATAACCGACTGC
* * *
125720004 TATTGAATAATTAATTATTATTGAAT
1 TACTGAATAATTAACTATTACTGAAT
125720030 GATAATAATA
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
36 48 0.98
37 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (36 bp):
TACTGAATAATTAACTATTACTGAATAACCGACTGC
Found at i:125720323 original size:38 final size:38
Alignment explanation
Indices: 125720281--125720355 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
125720271 AAATGAATGA
125720281 TTGAATATTTATGATCGCTATATGATTTTAAGTGTACT
1 TTGAATATTTATGATCGCTATATGATTTTAAGTGTACT
125720319 TTGAATATTTATGATCGCTATATGATTTTAAGTGTAC
1 TTGAATATTTATGATCGCTATATGATTTTAAGTGTAC
125720356 ATTATGTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.08, G:0.16, T:0.47
Consensus pattern (38 bp):
TTGAATATTTATGATCGCTATATGATTTTAAGTGTACT
Found at i:125720348 original size:19 final size:19
Alignment explanation
Indices: 125720288--125720348 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 19
125720278 TGATTGAATA
125720288 TTTATGATCGCTATATGAT
1 TTTATGATCGCTATATGAT
* *
125720307 TTTAAG-T-G-TACTTTGAAT
1 TTTATGATCGCTA-TATG-AT
125720325 ATTTATGATCGCTATATGAT
1 -TTTATGATCGCTATATGAT
125720345 TTTA
1 TTTA
125720349 AGTGTACATT
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
16 2 0.06
17 4 0.12
18 3 0.09
19 14 0.44
20 3 0.09
21 4 0.12
22 2 0.06
ACGTcount: A:0.28, C:0.08, G:0.15, T:0.49
Consensus pattern (19 bp):
TTTATGATCGCTATATGAT
Found at i:125721560 original size:20 final size:20
Alignment explanation
Indices: 125721514--125721560 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
125721504 AGAGGCACAC
* *
125721514 GCCCGTATGGCTTGGAACAT
1 GCCCGTGTGGCCTGGAACAT
125721534 GCCCGTGTGGCCTGGAACAT
1 GCCCGTGTGGCCTGGAACAT
*
125721554 GGCCGTG
1 GCCCGTG
125721561 GGGCTAGACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGAACAT
Found at i:125722617 original size:19 final size:21
Alignment explanation
Indices: 125722585--125722631 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
125722575 ATATATATAT
*
125722585 AAAGTAAAAGGAATA-AAAAA-
1 AAAG-AAAAAGAATAGAAAAAG
125722605 AAAGAAAAAGAATAGAAAAAG
1 AAAGAAAAAGAATAGAAAAAG
125722626 AAAGAA
1 AAAGAA
125722632 GGGATGAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 9 0.38
20 9 0.38
21 6 0.25
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (21 bp):
AAAGAAAAAGAATAGAAAAAG
Found at i:125722690 original size:20 final size:19
Alignment explanation
Indices: 125722658--125722696 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
125722648 GAGAGCAGGG
*
125722658 AAAAAAAAGGAAGGAAAAA
1 AAAAAAAAAGAAGGAAAAA
125722677 AAAAAAGAAAGAAGGAAAAA
1 AAAAAA-AAAGAAGGAAAAA
125722697 GGGAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAGAAGGAAAAA
Found at i:125724369 original size:46 final size:46
Alignment explanation
Indices: 125723799--125724363 Score: 826
Period size: 46 Copynumber: 12.2 Consensus size: 46
125723789 ATTCATCTAG
* *
125723799 CATGGCAACCTGATATGAAATGTGTAAAACCATGGTTGAAAGATAC
1 CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
* *
125723845 CATGGCAACCTGATATGAAATGTGTAAGGCCATGGTTGAAAGATAC
1 CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
* *
125723891 CATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATAT
1 CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
125723937 CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
1 CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
125723983 CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
1 CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
* *
125724029 CATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATAG
1 CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
* ***
125724075 CATGGCAACCTGATATGAAATGCACAAGACCATGGTTGAAAGATAC
1 CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
* * *
125724121 CATCGCAACATGATATGAAATGTGTAAGACCATAGTTGAAAGATAC
1 CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
*
125724167 CATGGCAATGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
1 CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
*
125724213 CATGGCAACGTGATATGAAATGTGTAAAACCATGGTTGAAAGATAC
1 CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
* * *
125724259 TATGGCAACGTGATA-GAAAATGAATGAATAAGACCATAGTTGAAAGACAC
1 CATGGCAACGTGATATG-AAATG--TG--TAAGACCATGGTTGAAAGATAC
* * * * ** *
125724309 TATGGCAATGTGACATGAAAAGAATAAGTCCATGGTTGAAAGATAC
1 CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
*
125724355 TATGGCAAC
1 CATGGCAAC
125724364 ATGACAGAAA
Statistics
Matches: 476, Mismatches: 37, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
45 1 0.00
46 436 0.92
48 2 0.00
50 36 0.08
51 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.24
Consensus pattern (46 bp):
CATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
Found at i:125725635 original size:2 final size:2
Alignment explanation
Indices: 125725630--125725665 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
125725620 TTTCTTTTTT
*
125725630 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
125725666 AAAGCATGGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:125727367 original size:13 final size:14
Alignment explanation
Indices: 125727340--125727368 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
125727330 GGTATACATA
125727340 TTTTTTTTGTGATT
1 TTTTTTTTGTGATT
125727354 TTTTTTTTGT-ATT
1 TTTTTTTTGTGATT
125727367 TT
1 TT
125727369 CGTTTTGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.07, C:0.00, G:0.10, T:0.83
Consensus pattern (14 bp):
TTTTTTTTGTGATT
Found at i:125728129 original size:17 final size:18
Alignment explanation
Indices: 125728104--125728141 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
125728094 TCTATTTCGT
125728104 TTTCATTCTTTC-TTTTA
1 TTTCATTCTTTCATTTTA
*
125728121 TTTCTTTCTTTCATTTTA
1 TTTCATTCTTTCATTTTA
125728139 TTT
1 TTT
125728142 GTTTTATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTCATTCTTTCATTTTA
Found at i:125728136 original size:13 final size:13
Alignment explanation
Indices: 125728104--125728136 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
125728094 TCTATTTCGT
125728104 TTTCA-TTCTTTC
1 TTTCATTTCTTTC
*
125728116 TTTTATTTCTTTC
1 TTTCATTTCTTTC
125728129 TTTCATTT
1 TTTCATTT
125728137 TATTTGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTCATTTCTTTC
Found at i:125731736 original size:46 final size:46
Alignment explanation
Indices: 125731661--125731934 Score: 370
Period size: 46 Copynumber: 6.0 Consensus size: 46
125731651 TTATCTTTGA
* * * *
125731661 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
**
125731707 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * **
125731753 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
125731799 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
125731845 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
125731891 CATGTTGCCATGGTATCTTTCAGCCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
125731935 TTCAGAAAGC
Statistics
Matches: 206, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 202 0.98
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:125737402 original size:2 final size:2
Alignment explanation
Indices: 125737395--125737426 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
125737385 CTCCAATGCC
125737395 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
125737427 TATGGGCTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:125741800 original size:13 final size:13
Alignment explanation
Indices: 125741790--125741829 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
125741780 TTCGTTTTCA
125741790 TTCTTTCTTTTAT
1 TTCTTTCTTTTAT
125741803 TTCTTTCTTTTAT
1 TTCTTTCTTTTAT
125741816 TT-TATT-TTTTAT
1 TTCT-TTCTTTTAT
125741828 TT
1 TT
125741830 AATTACTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.35
13 17 0.65
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (13 bp):
TTCTTTCTTTTAT
Found at i:125743945 original size:4 final size:4
Alignment explanation
Indices: 125743938--125743970 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
125743928 GAGTAAGTAA
*
125743938 AAAG AAAG AAAG AAAG AAAG AAAG ATAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG A
125743971 GTTACAGAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (4 bp):
AAAG
Found at i:125744833 original size:47 final size:47
Alignment explanation
Indices: 125744769--125744879 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
125744759 GACATTGAGT
*
125744769 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
125744816 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
125744863 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
125744880 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:125751228 original size:4 final size:4
Alignment explanation
Indices: 125751219--125751255 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
125751209 AGCAAACGTG
125751219 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
125751256 TAGAAAAGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:125758983 original size:41 final size:41
Alignment explanation
Indices: 125758926--125759068 Score: 164
Period size: 41 Copynumber: 3.5 Consensus size: 41
125758916 CGAATGGTAT
*
125758926 CCGGGCTAAGTCCCGAAGGC-TTTTGTGCTAAGTGACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTTGTGC-AAGTGACCAAAA
* * *
125758967 CCGGGTTGAGTCCCGAAGGCATTTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTTGTGCAAGTGACCAAAA
* * * * *
125759008 CCGGGTTAAGTCCCGAAGGCA-TTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTTGTGCAAGTGACCAAAA
* *
125759048 CCGGGCTAATTCCCGAAGGCA
1 CCGGGTTAAGTCCCGAAGGCA
125759069 ATTGTGCGAA
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
40 35 0.38
41 48 0.53
42 8 0.09
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (41 bp):
CCGGGTTAAGTCCCGAAGGCATTTTGTGCAAGTGACCAAAA
Found at i:125759052 original size:40 final size:40
Alignment explanation
Indices: 125758926--125759119 Score: 183
Period size: 40 Copynumber: 4.8 Consensus size: 40
125758916 CGAATGGTAT
* * * *
125758926 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACCAAAA
* * *
125758967 CCGGGTTGAGTCCCGAAGGCATTTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCA-TTCGTGCGAGTTACCAAAA
* * *
125759008 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACCAAAA
* * * * *
125759048 CCGGGCTAATTCCCGAAGGCAATT-GTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACCAAAA
* * * *
125759088 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
125759120 CGCTATATCT
Statistics
Matches: 129, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 69 0.53
41 51 0.40
42 7 0.05
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACCAAAA
Found at i:125762109 original size:4 final size:4
Alignment explanation
Indices: 125762100--125762128 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
125762090 AGCAAACGTG
125762100 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
125762129 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:125764608 original size:4 final size:4
Alignment explanation
Indices: 125764599--125764627 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
125764589 AGCAAACGTG
125764599 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
125764628 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:125772393 original size:15 final size:15
Alignment explanation
Indices: 125772373--125772402 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
125772363 GTTATTCCAG
125772373 TTTAAGAGGTACAAA
1 TTTAAGAGGTACAAA
125772388 TTTAAGAGGTACAAA
1 TTTAAGAGGTACAAA
125772403 CTTCCATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (15 bp):
TTTAAGAGGTACAAA
Found at i:125776586 original size:25 final size:24
Alignment explanation
Indices: 125776548--125776600 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
125776538 CATTTATAAT
125776548 TAATTTTAATTTTATAA-AATAAAA
1 TAATTTTAATTTTA-AATAATAAAA
*
125776572 TAATTTTTATATTTAAATAATAAAA
1 TAATTTTAAT-TTTAAATAATAAAA
125776597 TAAT
1 TAAT
125776601 ATGAAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
TAATTTTAATTTTAAATAATAAAA
Found at i:125781877 original size:30 final size:31
Alignment explanation
Indices: 125781803--125781878 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 31
125781793 ATCCAGTGAT
* *
125781803 TTAAATAAAAATATTT-AAATAATTTATTAAC
1 TTAAATAAAAAT-TTTCGAATAATTTAATAAC
*
125781834 TTAAATAAAAATTTTCGAATAGTTTAATAA-
1 TTAAATAAAAATTTTCGAATAATTTAATAAC
* *
125781864 TTAAATTATAATTTT
1 TTAAATAAAAATTTT
125781879 TTTTTTCACG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
30 16 0.41
31 23 0.59
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (31 bp):
TTAAATAAAAATTTTCGAATAATTTAATAAC
Found at i:125782330 original size:33 final size:33
Alignment explanation
Indices: 125782293--125782358 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
125782283 ATTTATAATT
*
125782293 TAAAAAATTTTAAAAAACTAAAATAAATATTTA
1 TAAAAAACTTTAAAAAACTAAAATAAATATTTA
*
125782326 TAAAAAACTTTAAAAGACTAAAATAAATATTTA
1 TAAAAAACTTTAAAAAACTAAAATAAATATTTA
125782359 CTATTGTAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (33 bp):
TAAAAAACTTTAAAAAACTAAAATAAATATTTA
Found at i:125789041 original size:15 final size:14
Alignment explanation
Indices: 125789015--125789099 Score: 68
Period size: 15 Copynumber: 6.0 Consensus size: 14
125789005 TATTCTAATA
*
125789015 CTATTATTATTTAT
1 CTATTTTTATTTAT
125789029 CTAATTTTTATTTAT
1 CT-ATTTTTATTTAT
* *
125789044 CTATTTATATTTCT
1 CTATTTTTATTTAT
*
125789058 ACTATTATTATATT-T
1 -CTATTTTTAT-TTAT
125789073 CTATTTATTATTT-T
1 CTATTT-TTATTTAT
*
125789087 -TATTTCTATTTAT
1 CTATTTTTATTTAT
125789100 ATACTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
12 5 0.08
13 6 0.10
14 20 0.34
15 26 0.44
16 2 0.03
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (14 bp):
CTATTTTTATTTAT
Found at i:125789070 original size:17 final size:15
Alignment explanation
Indices: 125789048--125789091 Score: 56
Period size: 17 Copynumber: 2.9 Consensus size: 15
125789038 ATTTATCTAT
125789048 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
125789065 TTATATTTCTATTTA
1 TTATATTTCTATTTA
125789080 TTAT-TTT-TATTT
1 TTATATTTCTATTT
125789092 CTATTTATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.19
14 3 0.11
15 7 0.26
16 1 0.04
17 11 0.41
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:125789084 original size:44 final size:42
Alignment explanation
Indices: 125789013--125789097 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 42
125789003 GTTATTCTAA
125789013 TACTATTATTATTTATCTAATTTTTATTTATCTATTTATATTTC
1 TACTATTATTATTTATCTAATTTTTATTT-T-TATTTATATTTC
*
125789057 TACTATTATTATATT-TCT-ATTTATTATTTTTATTTCTATTT
1 TACTATTATTAT-TTATCTAATTT-TTATTTTTATTTATATTT
125789098 ATATACTAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
42 10 0.26
43 5 0.13
44 21 0.55
45 2 0.05
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (42 bp):
TACTATTATTATTTATCTAATTTTTATTTTTATTTATATTTC
Found at i:125789092 original size:19 final size:19
Alignment explanation
Indices: 125789018--125789099 Score: 87
Period size: 19 Copynumber: 4.2 Consensus size: 19
125789008 TCTAATACTA
*
125789018 TTATTATTTATCTAATTTTTAT
1 TTATTATTTA--T-ATTTCTAT
125789040 TTATCTATTTATATTTCTA-
1 TTAT-TATTTATATTTCTAT
*
125789059 CTATTA-TTATATTTCTAT
1 TTATTATTTATATTTCTAT
*
125789077 TTATTATTTTTATTTCTAT
1 TTATTATTTATATTTCTAT
125789096 TTAT
1 TTAT
125789100 ATACTAATAT
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
17 11 0.21
18 7 0.13
19 18 0.34
20 6 0.11
21 1 0.02
22 4 0.08
23 6 0.11
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTATTTATATTTCTAT
Found at i:125789292 original size:25 final size:24
Alignment explanation
Indices: 125789231--125789330 Score: 76
Period size: 25 Copynumber: 3.9 Consensus size: 24
125789221 TATAACGCTC
*
125789231 ATTTCAAATTTTTATACATTATTT
1 ATTTCAAATTTTTATACATTATGT
*
125789255 ACTTT-AATATTTTTATATATTATGT
1 A-TTTCAA-ATTTTTATACATTATGT
* *
125789280 ATTTCAAACTTTTTTTTACACATTATAT
1 ATTTCAAA----TTTTTATACATTATGT
* *
125789308 ATTTTAAATTGTTTATATATTAT
1 ATTTCAAATT-TTTATACATTAT
125789331 TTTTAAAGAG
Statistics
Matches: 60, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
24 9 0.15
25 31 0.52
28 20 0.33
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (24 bp):
ATTTCAAATTTTTATACATTATGT
Found at i:125789357 original size:22 final size:21
Alignment explanation
Indices: 125789303--125789357 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
125789293 TTTTACACAT
**
125789303 TATA-TATTTTAAATTGTTTA
1 TATATTATTTTAAAGAGTTTA
125789323 TATATTATTTTTAAAGAGTTTTA
1 TATATTA-TTTTAAAGAG-TTTA
125789346 TATATTATTTTA
1 TATATTATTTTA
125789358 TCTTGAATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 4 0.13
21 2 0.07
22 13 0.43
23 11 0.37
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (21 bp):
TATATTATTTTAAAGAGTTTA
Found at i:125791703 original size:46 final size:44
Alignment explanation
Indices: 125791599--125791706 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
125791589 TGTCTTTGAC
** * * *
125791599 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
125791643 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
125791689 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
125791707 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:125793674 original size:40 final size:40
Alignment explanation
Indices: 125793619--125793828 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
125793609 AACATTGGAA
125793619 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
125793659 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
125793699 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
125793739 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
125793778 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
125793819 CTATATCCGG
1 ATATATCCGG
125793829 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:125801706 original size:40 final size:40
Alignment explanation
Indices: 125801651--125801860 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
125801641 AACATTGGAA
125801651 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
125801691 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
125801731 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
125801771 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
125801810 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
125801851 CTATATCCGG
1 ATATATCCGG
125801861 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:125810332 original size:46 final size:44
Alignment explanation
Indices: 125810228--125810335 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
125810218 TGTCTTTGAC
** * * *
125810228 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
125810272 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
125810318 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
125810336 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:125814719 original size:1 final size:1
Alignment explanation
Indices: 125814680--125814704 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
125814670 TTTCTGTTGG
125814680 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
125814705 GCATCCACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:125822384 original size:14 final size:15
Alignment explanation
Indices: 125822358--125822386 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
125822348 AGCTTGTTTA
125822358 TATTAATTTTTATAT
1 TATTAATTTTTATAT
125822373 TATTAA-TTTTATAT
1 TATTAATTTTTATAT
125822387 AAAAATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TATTAATTTTTATAT
Found at i:125822417 original size:9 final size:9
Alignment explanation
Indices: 125822403--125822432 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
125822393 AAATTTTAAA
125822403 AAATATATT
1 AAATATATT
125822412 AAATATATT
1 AAATATATT
*
125822421 AAAAATATT
1 AAATATATT
125822430 AAA
1 AAA
125822433 ATAAATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
AAATATATT
Found at i:125822437 original size:23 final size:22
Alignment explanation
Indices: 125822383--125822442 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 22
125822373 TATTAATTTT
*
125822383 ATATAAAAATAAAT-TTTAAAA
1 ATATTAAAATAAATATTTAAAA
* *
125822404 A-A-TATATTAAATATATTAAAA
1 ATATTAAAATAAATAT-TTAAAA
125822425 ATATTAAAATAAATATTT
1 ATATTAAAATAAATATTT
125822443 TTCAATAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
19 7 0.23
20 2 0.07
21 8 0.27
22 3 0.10
23 10 0.33
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
ATATTAAAATAAATATTTAAAA
Found at i:125830104 original size:6 final size:6
Alignment explanation
Indices: 125830092--125830137 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
125830082 TCCAATGATC
* * *
125830092 ACCATG GCCATG GCCATG ACCATG ACCATG ACCATG ACCATC ACCA
1 ACCATG ACCATG ACCATG ACCATG ACCATG ACCATG ACCATG ACCA
125830138 CCACCACCAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.15
Consensus pattern (6 bp):
ACCATG
Found at i:125830143 original size:18 final size:18
Alignment explanation
Indices: 125830105--125830143 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
125830095 ATGGCCATGG
* **
125830105 CCATGACCATGACCATGA
1 CCATGACCATCACCACCA
125830123 CCATGACCATCACCACCA
1 CCATGACCATCACCACCA
125830141 CCA
1 CCA
125830144 CCACCATCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.44, G:0.10, T:0.13
Consensus pattern (18 bp):
CCATGACCATCACCACCA
Found at i:125835727 original size:44 final size:45
Alignment explanation
Indices: 125835639--125835727 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
125835629 AGAACAGAAA
*
125835639 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAT
*
125835685 TGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGA
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGA
125835728 ATAATTCATG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 20 0.49
46 21 0.51
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (45 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:125835738 original size:44 final size:45
Alignment explanation
Indices: 125835632--125835743 Score: 136
Period size: 44 Copynumber: 2.5 Consensus size: 45
125835622 ACAGGACAGA
* * *
125835632 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* * *
125835678 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
**
125835722 ACAGGAATAATTCATGTAAGTC
1 ACAGGAATAAGCCATGTAAGTC
125835744 TATGTCAAAG
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.55
46 26 0.45
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (45 bp):
ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:125837491 original size:17 final size:17
Alignment explanation
Indices: 125837466--125837509 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
125837456 AAATCCCAAT
*
125837466 TTTCTCTTTTTCTTTTC
1 TTTCCCTTTTTCTTTTC
125837483 TTTCCCTTTTTCTTTTC
1 TTTCCCTTTTTCTTTTC
125837500 TTTCCCTTTT
1 TTTCCCTTTT
125837510 CTTCCCCTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTCCCTTTTTCTTTTC
Found at i:125837935 original size:3 final size:3
Alignment explanation
Indices: 125837927--125837990 Score: 119
Period size: 3 Copynumber: 21.0 Consensus size: 3
125837917 ATCTTTAACT
125837927 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
125837976 TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
125837991 AATCTTAGAT
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 57 0.95
4 3 0.05
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:125841170 original size:60 final size:60
Alignment explanation
Indices: 125841077--125841199 Score: 246
Period size: 60 Copynumber: 2.0 Consensus size: 60
125841067 AGCCCTGGAT
125841077 AAGTTAGTTGATGATCGTTGGGGAGAAAAGTTAAAGAGGTCATCGAGGTTTCTTCTAGAG
1 AAGTTAGTTGATGATCGTTGGGGAGAAAAGTTAAAGAGGTCATCGAGGTTTCTTCTAGAG
125841137 AAGTTAGTTGATGATCGTTGGGGAGAAAAGTTAAAGAGGTCATCGAGGTTTCTTCTAGAG
1 AAGTTAGTTGATGATCGTTGGGGAGAAAAGTTAAAGAGGTCATCGAGGTTTCTTCTAGAG
125841197 AAG
1 AAG
125841200 ATATTGCAGC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.31, C:0.08, G:0.32, T:0.29
Consensus pattern (60 bp):
AAGTTAGTTGATGATCGTTGGGGAGAAAAGTTAAAGAGGTCATCGAGGTTTCTTCTAGAG
Found at i:125846128 original size:56 final size:53
Alignment explanation
Indices: 125846039--125846146 Score: 162
Period size: 56 Copynumber: 2.0 Consensus size: 53
125846029 TATTTATAGA
* *
125846039 AAATAATATTTAATTTTGTTTTTTTTGTCTTTTATGTTTTATATAAATTTTAT
1 AAATAATATTAAATTTTGTTTTTTTTGTCTTTTATATTTTATATAAATTTTAT
*
125846092 AAATAATATTAAATTTTAATTTTTTTTTGTCTTTTTATATTTTATATAAATTTTA
1 AAATAATATTAAATTTT--GTTTTTTTTGTC-TTTTATATTTTATATAAATTTTA
125846147 GAAAATATAT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
53 16 0.33
55 11 0.22
56 22 0.45
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (53 bp):
AAATAATATTAAATTTTGTTTTTTTTGTCTTTTATATTTTATATAAATTTTAT
Found at i:125855176 original size:2 final size:2
Alignment explanation
Indices: 125855169--125855202 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
125855159 ATTTAATAAG
125855169 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
125855203 TAAACTTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:125856363 original size:6 final size:6
Alignment explanation
Indices: 125856352--125856392 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
125856342 TTAATCTTAT
*
125856352 CATGTG CATGTG CATGTG CATGTG CATGTG TATGTG CATGT
1 CATGTG CATGTG CATGTG CATGTG CATGTG CATGTG CATGT
125856393 ATTTCTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.17, C:0.15, G:0.32, T:0.37
Consensus pattern (6 bp):
CATGTG
Found at i:125861759 original size:34 final size:34
Alignment explanation
Indices: 125861680--125861744 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
125861670 AAAAAAAATA
*
125861680 AAAATAAAATACTAGAAATTAAAAGTATTATCCT
1 AAAATAAAATAATAGAAATTAAAAGTATTATCCT
125861714 AAAATAAAATAATAGGAAATTAAAA-TATTAT
1 AAAATAAAATAATA-GAAATTAAAAGTATTAT
125861745 TTTACTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 19 0.66
35 10 0.34
ACGTcount: A:0.60, C:0.05, G:0.06, T:0.29
Consensus pattern (34 bp):
AAAATAAAATAATAGAAATTAAAAGTATTATCCT
Found at i:125861762 original size:24 final size:25
Alignment explanation
Indices: 125861730--125861782 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
125861720 AAATAATAGG
*
125861730 AAATTAAAATATTA-TTTTACTAAA
1 AAATAAAAATATTATTTTTACTAAA
*
125861754 AAATAAAAATATTATTTTTACTAAT
1 AAATAAAAATATTATTTTTACTAAA
125861779 AAAT
1 AAAT
125861783 CTCAAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (25 bp):
AAATAAAAATATTATTTTTACTAAA
Found at i:125862842 original size:12 final size:12
Alignment explanation
Indices: 125862826--125862856 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
125862816 TTTAATTTTT
125862826 ATATTAATTTAA
1 ATATTAATTTAA
*
125862838 TTATTAATTTAA
1 ATATTAATTTAA
125862850 ATATTAA
1 ATATTAA
125862857 ATGTTGATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
ATATTAATTTAA
Found at i:125862849 original size:17 final size:17
Alignment explanation
Indices: 125862810--125862849 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
125862800 ATAAGTATTG
*
125862810 TATTAATTTAATTTTTA
1 TATTAATTTAATTTTAA
125862827 TATTAATTTAATTATTAA
1 TATTAATTTAATT-TTAA
125862845 T-TTAA
1 TATTAA
125862850 ATATTAAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TATTAATTTAATTTTAA
Found at i:125867362 original size:15 final size:15
Alignment explanation
Indices: 125867342--125867370 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
125867332 CGTGAATAGT
125867342 CCATTAAAAAGTAGC
1 CCATTAAAAAGTAGC
125867357 CCATTAAAAAGTAG
1 CCATTAAAAAGTAG
125867371 ATATTTTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.17, G:0.14, T:0.21
Consensus pattern (15 bp):
CCATTAAAAAGTAGC
Found at i:125869991 original size:21 final size:21
Alignment explanation
Indices: 125869959--125870001 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
125869949 AAATAAACAT
*
125869959 AAAGAAATAAAAAGCAAAAAA
1 AAAGAAATAAAAAACAAAAAA
*
125869980 AAAGAGAA-AAAAAATAAAAAA
1 AAAGA-AATAAAAAACAAAAAA
125870001 A
1 A
125870002 TTACCCGGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.84, C:0.02, G:0.09, T:0.05
Consensus pattern (21 bp):
AAAGAAATAAAAAACAAAAAA
Found at i:125877071 original size:35 final size:35
Alignment explanation
Indices: 125877027--125877192 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
125877017 TTCTCATTGA
** *
125877027 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
125877062 AATGCCATACCTACATTT-TTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
125877101 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
125877136 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
125877171 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
125877193 CTTTTCCATG
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
34 12 0.10
35 75 0.65
38 2 0.02
39 18 0.16
40 9 0.08
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:125877109 original size:74 final size:73
Alignment explanation
Indices: 125877022--125877192 Score: 217
Period size: 74 Copynumber: 2.4 Consensus size: 73
125877012 TGGTTTTCTC
** * * **
125877022 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTT-TTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
125877085 TCAGTATGG
65 TCAGTATGG
*
125877094 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
125877159 CTCAGTATGG
64 CTCAGTATGG
125877169 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
125877193 CTTTTCCATG
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
70 21 0.24
72 1 0.01
73 9 0.10
74 44 0.50
75 13 0.15
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:125884565 original size:35 final size:35
Alignment explanation
Indices: 125884521--125884688 Score: 176
Period size: 35 Copynumber: 4.6 Consensus size: 35
125884511 TTCTCATTGA
** *
125884521 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* ****
125884556 AATGCCATACCTACATTTTTTTGACTCAGTATGGATTTGAT
1 AATACCATACCTACA-TTTCACAACTCAGTAT-G----GAT
*
125884597 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
125884632 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
125884667 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
125884689 CTTTTCCATG
Statistics
Matches: 115, Mismatches: 12, Indels: 12
0.83 0.09 0.09
Matches are distributed among these distances:
35 72 0.63
36 15 0.13
39 1 0.01
40 13 0.11
41 14 0.12
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:125894577 original size:46 final size:46
Alignment explanation
Indices: 125894525--125894700 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
125894515 TGGTTGAGCA
*
125894525 TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
125894571 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
125894616 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
125894664 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
125894701 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:125894681 original size:93 final size:93
Alignment explanation
Indices: 125894522--125894692 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
125894512 GGATGGTTGA
* **
125894522 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
125894587 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
125894615 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
125894680 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
125894693 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:125896949 original size:73 final size:73
Alignment explanation
Indices: 125896843--125897022 Score: 240
Period size: 73 Copynumber: 2.5 Consensus size: 73
125896833 TTCTACTTTT
* * *
125896843 TCAA-AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGAGG-CACGCTGAGGTATTTTCAAT
1 TCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGATGAGGTAATTTCAAT
*
125896906 TTTTGTGTTG
65 TTCTGT-TTG
* ** *
125896916 TTAA-TTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGATGAGGTAATTTCAATT
1 TCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATT
125896980 TCTGTTTG
66 TCTGTTTG
*
125896988 TCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TCAAGAATCAACTCATATTGCGAGAGGTGAGTTGA
125897023 ACCTTTTAAT
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
72 9 0.10
73 84 0.90
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (73 bp):
TCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATT
TCTGTTTG
Found at i:125897230 original size:75 final size:74
Alignment explanation
Indices: 125897039--125897542 Score: 450
Period size: 75 Copynumber: 6.8 Consensus size: 74
125897029 TAATTTCTAC
* **
125897039 TGTTTCAAAAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGGCACGCTGAGGTAT
1 TGTTTCAAAAAAATTGA-CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTAT
*
125897102 -TTTCAATTTT
65 CTTT-AATTTA
** * *
125897112 TGTGTT---GTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGT
1 TGT-TTCAAAAAAATT-GACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-ACACGCTGAGGT
*
125897174 ATCTTTAGTTTA
63 ATCTTTAATTTA
** *
125897186 TGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGT-CACGCTGAGGTATT
1 TGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATC
*
125897250 TTTAATTCCTGT
66 TTTAATT--T-A
* * *
125897262 TGTTTCAAAAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGTTGAGGTAA
1 TGTTTCAAAAAAATTGA-CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGT-A
*
125897325 T-TTCAATTTA
64 TCTTTAATTTA
* * ** * * *
125897335 TG-CTC--CAAAATCAACTCATATTGCGAGAGATGAGTTGAGCATCAGGTCACACGCTGAAGTAT
1 TGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-ACACGCTGAGGTAT
*
125897397 CTTTAGTTTA
65 CTTTAATTTA
**
125897407 TGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGT-CACGCTGAGGTATT
1 TGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTA-T
* *
125897471 TTTTAATTCCTGT
65 CTTTAATT--T-A
* * *
125897484 TGTTTC--AAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGTTGAGGT
1 TGTTTCAAAAAAATTGA-CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGT
125897543 GATTTCAAAA
Statistics
Matches: 351, Mismatches: 52, Indels: 54
0.77 0.11 0.12
Matches are distributed among these distances:
70 33 0.09
71 5 0.01
72 51 0.15
73 42 0.12
74 32 0.09
75 117 0.33
76 63 0.18
77 8 0.02
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.32
Consensus pattern (74 bp):
TGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATC
TTTAATTTA
Found at i:125897417 original size:221 final size:223
Alignment explanation
Indices: 125897039--125897550 Score: 852
Period size: 221 Copynumber: 2.3 Consensus size: 223
125897029 TAATTTCTAC
** * * *
125897039 TGTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTT
1 TGTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATT
* * ** ** * *
125897104 TCAATTTTTGTGTTGTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
66 TCAA-TTTTATGCTCCAAAATCAACTCATATTGCGAGAGATGAGTTGAGCATCAGGTCACACGCT
*
125897169 GAGGTATCTTTAGTTTATGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAG
130 GAAGTATCTTTAGTTTATGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAG
125897234 GTCACGCTGAGGTA-TTTTTAATTCCTGT
195 GTCACGCTGAGGTATTTTTTAATTCCTGT
125897262 TGTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATT
1 TGTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATT
125897327 TCAA-TTTATGCTCCAAAATCAACTCATATTGCGAGAGATGAGTTGAGCATCAGGTCACACGCTG
66 TCAATTTTATGCTCCAAAATCAACTCATATTGCGAGAGATGAGTTGAGCATCAGGTCACACGCTG
125897391 AAGTATCTTTAGTTTATGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGG
131 AAGTATCTTTAGTTTATGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGG
125897456 TCACGCTGAGGTATTTTTTAATTCCTGT
196 TCACGCTGAGGTATTTTTTAATTCCTGT
*
125897484 TGTTTC--AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTGATT
1 TGTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATT
125897547 TCAA
66 TCAA
125897551 AATCAATTCA
Statistics
Matches: 273, Mismatches: 15, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
220 60 0.22
221 129 0.47
222 20 0.07
223 64 0.23
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (223 bp):
TGTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATT
TCAATTTTATGCTCCAAAATCAACTCATATTGCGAGAGATGAGTTGAGCATCAGGTCACACGCTG
AAGTATCTTTAGTTTATGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGG
TCACGCTGAGGTATTTTTTAATTCCTGT
Found at i:125897452 original size:145 final size:149
Alignment explanation
Indices: 125897047--125897524 Score: 403
Period size: 145 Copynumber: 3.2 Consensus size: 149
125897037 ACTGTTTCAA
* * * * *
125897047 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTAT-TTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGTCACGCTGAAGTATCTTT-AA-TT
* ** * ** *
125897111 TTG-TGTTGT----AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGA
64 CTGATGTT-TCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTCAAGCCTCAAG--ACACGCTGA
* * *
125897171 GGTATCTTT-AGTT-T-ATGTTTC
126 GGTATATTTCAATTCTGATGTCTC
** ** * * *
125897192 AAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGTCACGCTGAAGTATCTTTAATT
* ** *
125897257 CCTGTTGTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG
64 -CTGATGTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTCAAGCCTCAAGACACGCTGAGG
125897322 TA-ATTTCAATT-T-ATG-CTC
128 TATATTTCAATTCTGATGTCTC
* * *
125897340 CAAAATCAACTCATATTGCGAGAGATGAGTTGAGCATCAGGTCACACGCTGAAGTATCTTTAGTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGT--CACGCTGAAGTATCTTTAATT
* * *
125897405 -T-ATGTTTCAAAAAAAT-TGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGG
64 CTGATGTTTCAAAAAAATCAG-CTCATATTGCGAGAGGTGAGTCAAGCCTCAAGACACGCTGAGG
* * * *
125897467 TATTTTTTAATTCCTGTTGTTTC
128 TATATTTCAATT-CTGATGTCTC
*
125897490 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
125897525 CTCAAGACAC
Statistics
Matches: 275, Mismatches: 40, Indels: 29
0.80 0.12 0.08
Matches are distributed among these distances:
144 1 0.00
145 54 0.20
146 45 0.16
147 53 0.19
148 31 0.11
149 21 0.08
150 34 0.12
151 36 0.13
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.32
Consensus pattern (149 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGTCACGCTGAAGTATCTTTAATTCT
GATGTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTCAAGCCTCAAGACACGCTGAGGTAT
ATTTCAATTCTGATGTCTC
Found at i:125897577 original size:58 final size:58
Alignment explanation
Indices: 125897486--125897604 Score: 159
Period size: 58 Copynumber: 2.1 Consensus size: 58
125897476 ATTCCTGTTG
* ** *
125897486 TTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTGA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAAGACACGCTGAGGT-A
* * *
125897545 TTTC-AAAATCAATTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAAGACACGCTGAGGTA
125897602 TTT
1 TTT
125897605 TTAATTCCTG
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
57 4 0.08
58 45 0.85
59 4 0.08
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (58 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAAGACACGCTGAGGTA
Found at i:125897655 original size:132 final size:132
Alignment explanation
Indices: 125897423--125897739 Score: 535
Period size: 132 Copynumber: 2.4 Consensus size: 132
125897413 AAAAAAATTG
125897423 ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTTAATTCCTGTTGTT
1 ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTA-TTTTTAATTCCTGTTGTT
*
125897488 TCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTGATTTCAAAA
65 TCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTGATTTCAAAA
125897553 TCA
130 TCA
*
125897556 ATTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATTCCTGTTGTTT
1 ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATTCCTGTTGTTT
*
125897621 CAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATATTGAGGTGATTTCAAAAT
66 CAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTGATTTCAAAAT
125897686 CA
131 CA
* * ** * * *
125897688 ACTCATATTGCAAGAGGTGATTTGAGCCTCGGGGCACGCTGAGATATTTTTA
1 ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTA
125897740 GTTTATGTTT
Statistics
Matches: 173, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
132 128 0.74
133 45 0.26
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (132 bp):
ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATTCCTGTTGTTT
CAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTGATTTCAAAAT
CA
Found at i:125899086 original size:21 final size:20
Alignment explanation
Indices: 125899054--125899095 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
125899044 AAATAAACAT
125899054 AAAGAAATAAAAAGCAAAAAA
1 AAAGAAATAAAAA-CAAAAAA
*
125899075 AAAGAGAA-AAAAATAAAAAA
1 AAAGA-AATAAAAACAAAAAA
125899095 A
1 A
125899096 TTACCCGGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 7 0.37
21 10 0.53
22 2 0.11
ACGTcount: A:0.83, C:0.02, G:0.10, T:0.05
Consensus pattern (20 bp):
AAAGAAATAAAAACAAAAAA
Found at i:125909484 original size:22 final size:23
Alignment explanation
Indices: 125909448--125909496 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
125909438 CAACATGCTC
* *
125909448 ATACACATTGACAATTTACGTTT
1 ATACACATAGACAATTTACATTT
125909471 ATACAC-TAGACAATTTACATTT
1 ATACACATAGACAATTTACATTT
125909493 -TACA
1 ATACA
125909497 ATCCATGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 4 0.17
22 14 0.58
23 6 0.25
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.37
Consensus pattern (23 bp):
ATACACATAGACAATTTACATTT
Done.