Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 435 of 444
Found at i:125914427 original size:3 final size:3
Alignment explanation
Indices: 125914416--125914447 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
125914406 GTTATTTTGC
125914416 TAT TA- TAT TAT TAT TAT T-T TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
125914448 TGGATATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.15
3 23 0.85
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:125914438 original size:14 final size:14
Alignment explanation
Indices: 125914416--125914448 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
125914406 GTTATTTTGC
*
125914416 TATTATATTATTAT
1 TATTTTATTATTAT
125914430 TATTTTATTATTAT
1 TATTTTATTATTAT
125914444 TATTT
1 TATTT
125914449 GGATATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TATTTTATTATTAT
Found at i:125914444 original size:11 final size:11
Alignment explanation
Indices: 125914416--125914495 Score: 54
Period size: 11 Copynumber: 6.9 Consensus size: 11
125914406 GTTATTTTGC
*
125914416 TATTATATTAT
1 TATTATTTTAT
125914427 TATTATTTTAT
1 TATTATTTTAT
125914438 TATTATTATT-T
1 TATTATT-TTAT
* *
125914449 GGATATTATATAAT
1 ---TATTATTTTAT
*
125914463 TCTTATTTTAT
1 TATTATTTTAT
**
125914474 TATTAATTTTGC
1 TATT-ATTTTAT
125914486 TATTATTTTA
1 TATTATTTTA
125914496 GAGATATTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
11 34 0.64
12 11 0.21
13 1 0.02
14 7 0.13
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.64
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:125914447 original size:36 final size:36
Alignment explanation
Indices: 125914407--125914491 Score: 120
Period size: 36 Copynumber: 2.4 Consensus size: 36
125914397 TGTTATGTTG
*
125914407 TTATTTTGCTATTATATTATTATTATTTTATTATTA
1 TTATTTTGCTATTATATAATTATTATTTTATTATTA
* * *
125914443 TTATTTGGATATTATATAATTCTTATTTTATTATTA
1 TTATTTTGCTATTATATAATTATTATTTTATTATTA
125914479 --ATTTTGCTATTAT
1 TTATTTTGCTATTAT
125914492 TTTAGAGATA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
34 11 0.26
36 32 0.74
ACGTcount: A:0.28, C:0.04, G:0.05, T:0.64
Consensus pattern (36 bp):
TTATTTTGCTATTATATAATTATTATTTTATTATTA
Found at i:125918141 original size:20 final size:21
Alignment explanation
Indices: 125918116--125918155 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
125918106 ACTTACTATG
125918116 TATCA-TATTCTTATTTTTTC
1 TATCATTATTCTTATTTTTTC
* *
125918136 TATCATTATTGTTGTTTTTT
1 TATCATTATTCTTATTTTTT
125918156 TACTGTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.17, C:0.10, G:0.05, T:0.68
Consensus pattern (21 bp):
TATCATTATTCTTATTTTTTC
Found at i:125922903 original size:1 final size:1
Alignment explanation
Indices: 125922897--125922925 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
125922887 AGATTTTAAC
125922897 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
125922926 GCGTTTCCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:125923865 original size:16 final size:16
Alignment explanation
Indices: 125923839--125923879 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
125923829 AACTAAAAAA
125923839 TAAGA-TTTATTTAAC
1 TAAGAGTTTATTTAAC
**
125923854 TAAGAGTTTATTTAGT
1 TAAGAGTTTATTTAAC
125923870 TAAGAGTTTA
1 TAAGAGTTTA
125923880 AAAGCTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 5 0.22
16 18 0.78
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (16 bp):
TAAGAGTTTATTTAAC
Found at i:125933990 original size:2 final size:2
Alignment explanation
Indices: 125933983--125934016 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
125933973 TTTGAAATTA
125933983 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
125934017 TGGTTAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:125935957 original size:13 final size:13
Alignment explanation
Indices: 125935939--125935963 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
125935929 TACACATTAA
125935939 TATATTATATATT
1 TATATTATATATT
125935952 TATATTATATAT
1 TATATTATATAT
125935964 ATGCAAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TATATTATATATT
Found at i:125936527 original size:22 final size:21
Alignment explanation
Indices: 125936498--125936538 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
125936488 TTAAAATTTC
125936498 AATAAAAA-TATAAAATAATTA
1 AATAAAAATTA-AAAATAATTA
125936519 AATATAAAATTAAAAATAAT
1 AATA-AAAATTAAAAATAAT
125936539 ATAATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 12 0.67
23 2 0.11
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (21 bp):
AATAAAAATTAAAAATAATTA
Found at i:125938496 original size:21 final size:22
Alignment explanation
Indices: 125938472--125938518 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
125938462 CAATGTTGTC
125938472 AAATTA-TATACAAAATTATTA
1 AAATTAGTATACAAAATTATTA
* * *
125938493 AAA-TAGTGTACAATATTATTC
1 AAATTAGTATACAAAATTATTA
125938514 AAATT
1 AAATT
125938519 TATTAAGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.10
21 18 0.86
22 1 0.05
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.38
Consensus pattern (22 bp):
AAATTAGTATACAAAATTATTA
Found at i:125944490 original size:16 final size:16
Alignment explanation
Indices: 125944471--125944509 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
125944461 AATTTTTTTA
*
125944471 AAAAAATTATTTTATC
1 AAAAAATTACTTTATC
* *
125944487 AAAAAAATACTTTATT
1 AAAAAATTACTTTATC
125944503 AAAAAAT
1 AAAAAAT
125944510 AATTACGTCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (16 bp):
AAAAAATTACTTTATC
Found at i:125944779 original size:2 final size:2
Alignment explanation
Indices: 125944772--125944798 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
125944762 TTTCTAACAC
125944772 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
125944799 GGATGAAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:125946401 original size:24 final size:27
Alignment explanation
Indices: 125946343--125946404 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
125946333 CGATGTGTTC
*
125946343 CAATCAAACGCTGATATTTTTTCTCTT
1 CAATCAAACTCTGATATTTTTTCTCTT
* *
125946370 -AGTTAAACTCTGAT-TTTTTT-T-TT
1 CAATCAAACTCTGATATTTTTTCTCTT
125946393 CAATCAAACTCT
1 CAATCAAACTCT
125946405 AATAACTCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
23 2 0.07
24 10 0.34
25 6 0.21
26 11 0.38
ACGTcount: A:0.27, C:0.19, G:0.06, T:0.47
Consensus pattern (27 bp):
CAATCAAACTCTGATATTTTTTCTCTT
Found at i:125948024 original size:2 final size:2
Alignment explanation
Indices: 125948019--125948043 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
125948009 ATAAACTTTT
125948019 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
125948044 TAATATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:125948278 original size:19 final size:18
Alignment explanation
Indices: 125948237--125948292 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
125948227 AAATTTTATT
125948237 CTTTTATTTTTTAAAAAA
1 CTTTTATTTTTTAAAAAA
* *
125948255 CTTTTATCTTTTAAAATTA
1 CTTTTATTTTTTAAAA-AA
* *
125948274 TTTTTATTTTTTAATAAA
1 CTTTTATTTTTTAAAAAA
125948292 C
1 C
125948293 AAATAAAAAT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
18 16 0.53
19 14 0.47
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (18 bp):
CTTTTATTTTTTAAAAAA
Found at i:125950617 original size:19 final size:19
Alignment explanation
Indices: 125950593--125950629 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
125950583 TTTCATCTAA
* *
125950593 TTAATTATAATTAATTATT
1 TTAATTAAAATAAATTATT
125950612 TTAATTAAAATAAATTAT
1 TTAATTAAAATAAATTAT
125950630 CGTAAATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TTAATTAAAATAAATTATT
Found at i:125958159 original size:24 final size:23
Alignment explanation
Indices: 125958129--125958198 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 23
125958119 AGAGAATCGA
125958129 AATAAAATTATATATTTTTATTAT
1 AATAAAATTATA-ATTTTTATTAT
* * *
125958153 AATAAAAATATAATTTTATTTTTTT
1 AATAAAATTATAA-TTT-TTATTAT
125958178 AAT-AAATTA-AATTTTTATTAT
1 AATAAAATTATAATTTTTATTAT
125958199 TTTTAGATAA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
21 5 0.13
22 3 0.08
23 3 0.08
24 19 0.50
25 8 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
AATAAAATTATAATTTTTATTAT
Found at i:125958169 original size:22 final size:23
Alignment explanation
Indices: 125958129--125958172 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
125958119 AGAGAATCGA
*
125958129 AATAAAATTATATATTTTTATTAT
1 AATAAAA-TATATAATTTTATTAT
125958153 AATAAAA-ATATAATTTTATT
1 AATAAAATATATAATTTTATT
125958173 TTTTTAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
24 7 0.37
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
AATAAAATATATAATTTTATTAT
Found at i:125958180 original size:25 final size:26
Alignment explanation
Indices: 125958152--125958210 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 26
125958142 ATTTTTATTA
125958152 TAATAAAAATATAA-TTTTATT-TTTT
1 TAATAAAAATA-AATTTTTATTATTTT
*
125958177 TAAT-AAATTAAATTTTTATTATTTT
1 TAATAAAAATAAATTTTTATTATTTT
125958202 TAGATAAAA
1 TA-ATAAAA
125958211 TGTAATTCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
23 2 0.07
24 12 0.41
25 10 0.34
26 2 0.07
27 3 0.10
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
TAATAAAAATAAATTTTTATTATTTT
Found at i:125958217 original size:27 final size:24
Alignment explanation
Indices: 125958129--125958217 Score: 67
Period size: 25 Copynumber: 3.5 Consensus size: 24
125958119 AGAGAATCGA
* * *
125958129 AATAAAATTATATATTT-TTATTAT
1 AATAAAATTA-ATTTTTATTTTTTT
125958153 AATAAAAATATAA-TTTTATTTTTTT
1 AAT-AAAAT-TAATTTTTATTTTTTT
125958178 AAT-AAATTAAATTTTTATTATTTTT
1 AATAAAATT-AATTTTTATT-TTTTT
125958203 AGATAAAATGTAATT
1 A-ATAAAAT-TAATT
125958218 CTATAATTAT
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
22 1 0.02
23 6 0.11
24 13 0.25
25 20 0.38
26 4 0.08
27 8 0.15
28 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
AATAAAATTAATTTTTATTTTTTT
Found at i:125958254 original size:16 final size:15
Alignment explanation
Indices: 125958232--125958274 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
125958222 AATTATTAAC
125958232 TTAAAATTTTATAAA
1 TTAAAATTTTATAAA
**
125958247 TTATAAATGATATAAA
1 TTA-AAATTTTATAAA
125958263 TTAAAATTTTAT
1 TTAAAATTTTAT
125958275 TATTTTAGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
TTAAAATTTTATAAA
Found at i:125964286 original size:151 final size:148
Alignment explanation
Indices: 125964051--125964348 Score: 560
Period size: 148 Copynumber: 2.0 Consensus size: 148
125964041 TGGCCTTTCA
*
125964051 CATTTTACCATCCCCCACCCCTAACTCTTGTTTTTGGGTGTTTTTGCTCCTCCTTTTACTCCAAC
1 CATTTTACCACCCCCCACCCCTAACTCTTGTTTTTGGGTGTTTTTGCTCCTCCTTTTACTCCAAC
125964116 ACAAGCATTAAAAAAAAAAAAAAAGAGAAACAAACCAAATCTACTAGTGAACTCTCTCCAAGGAT
66 ACAAGCATT---AAAAAAAAAAAAGAGAAACAAACCAAATCTACTAGTGAACTCTCTCCAAGGAT
125964181 CATGAAAGATGTTCCACAAGC
128 CATGAAAGATGTTCCACAAGC
125964202 CATTTTACCACCCCCCACCCCTAACTCTTGTTTTTGGGTGTTTTTGCTCCTCCTTTTACTCCAAC
1 CATTTTACCACCCCCCACCCCTAACTCTTGTTTTTGGGTGTTTTTGCTCCTCCTTTTACTCCAAC
125964267 ACAAGCATTAAAAAAAAAAAAGAGAAACAAACCAAATCTACTAGTGAACTCTCTCCAAGGATCAT
66 ACAAGCATTAAAAAAAAAAAAGAGAAACAAACCAAATCTACTAGTGAACTCTCTCCAAGGATCAT
125964332 GAAAGATGTTCCACAAG
131 GAAAGATGTTCCACAAG
125964349 AAATATTATT
Statistics
Matches: 146, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
148 73 0.50
151 73 0.50
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (148 bp):
CATTTTACCACCCCCCACCCCTAACTCTTGTTTTTGGGTGTTTTTGCTCCTCCTTTTACTCCAAC
ACAAGCATTAAAAAAAAAAAAGAGAAACAAACCAAATCTACTAGTGAACTCTCTCCAAGGATCAT
GAAAGATGTTCCACAAGC
Found at i:125968918 original size:5 final size:5
Alignment explanation
Indices: 125968908--125968932 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
125968898 GATAACCCCC
125968908 CTCTT CTCTT CTCTT CTCTT CTCTT
1 CTCTT CTCTT CTCTT CTCTT CTCTT
125968933 TTATCTCTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (5 bp):
CTCTT
Found at i:125971591 original size:8 final size:7
Alignment explanation
Indices: 125971565--125971589 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
125971555 TCGAAAATCC
125971565 AAAAGGA
1 AAAAGGA
125971572 AAAAGGA
1 AAAAGGA
125971579 AAAAGGA
1 AAAAGGA
125971586 AAAA
1 AAAA
125971590 AGATGTCAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (7 bp):
AAAAGGA
Found at i:125979941 original size:12 final size:12
Alignment explanation
Indices: 125979905--125979976 Score: 55
Period size: 12 Copynumber: 6.4 Consensus size: 12
125979895 TGATACTATT
125979905 TATTTTATAA-A
1 TATTTTATAATA
*
125979916 TAATTT-TAA-A
1 TATTTTATAATA
*
125979926 -ATTTTATCATA
1 TATTTTATAATA
* *
125979937 TATTTTTTAAAA
1 TATTTTATAATA
*
125979949 TATTTTATTATA
1 TATTTTATAATA
*
125979961 T-TTTTATAAAA
1 TATTTTATAATA
125979972 TATTT
1 TATTT
125979977 GTCAATTTTT
Statistics
Matches: 46, Mismatches: 11, Indels: 7
0.72 0.17 0.11
Matches are distributed among these distances:
9 4 0.09
10 6 0.13
11 15 0.33
12 21 0.46
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.58
Consensus pattern (12 bp):
TATTTTATAATA
Found at i:125979961 original size:24 final size:23
Alignment explanation
Indices: 125979919--125979976 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
125979909 TTATAAATAA
125979919 TTTT-AAA-ATTTTATCATATATT
1 TTTTAAAATATTTTATCATAT-TT
*
125979941 TTTTAAAATATTTTATTATATTT
1 TTTTAAAATATTTTATCATATTT
*
125979964 TTATAAAATATTT
1 TTTTAAAATATTT
125979977 GTCAATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
22 4 0.12
23 17 0.53
24 11 0.34
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTTAAAATATTTTATCATATTT
Found at i:125979970 original size:23 final size:23
Alignment explanation
Indices: 125979905--125979976 Score: 80
Period size: 22 Copynumber: 3.2 Consensus size: 23
125979895 TGATACTATT
* *
125979905 TATTTTATAAATA-ATTTT-AAA
1 TATTTTATATATATTTTTTAAAA
125979926 -ATTTTATCATATATTTTTTAAAA
1 TATTTTAT-ATATATTTTTTAAAA
125979949 TATTTTAT-TATATTTTTATAAAA
1 TATTTTATATATATTTTT-TAAAA
125979972 TATTT
1 TATTT
125979977 GTCAATTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
20 7 0.16
21 4 0.09
22 13 0.30
23 13 0.30
24 7 0.16
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.58
Consensus pattern (23 bp):
TATTTTATATATATTTTTTAAAA
Found at i:125992932 original size:20 final size:20
Alignment explanation
Indices: 125992902--125992944 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 20
125992892 GGGTTTAGGA
*
125992902 TTTGAGATTCGAGATTCGAGG
1 TTTGAGATTCGAG-TTCAAGG
125992923 TTTG-GATTCGAGTTCAAGG
1 TTTGAGATTCGAGTTCAAGG
125992942 TTT
1 TTT
125992945 AGCTTTTAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.43
20 8 0.38
21 4 0.19
ACGTcount: A:0.21, C:0.09, G:0.30, T:0.40
Consensus pattern (20 bp):
TTTGAGATTCGAGTTCAAGG
Found at i:125994795 original size:23 final size:24
Alignment explanation
Indices: 125994744--125994795 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
125994734 CGAGCCACAA
125994744 TTTTATTATTTTAATTAAAGTTTC
1 TTTTATTATTTTAATTAAAGTTTC
* *
125994768 ATTTATTA-TTTACATTAAA-TTTT
1 TTTTATTATTTTA-ATTAAAGTTTC
125994791 TTTTA
1 TTTTA
125994796 GAAATATGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (24 bp):
TTTTATTATTTTAATTAAAGTTTC
Found at i:126003239 original size:33 final size:33
Alignment explanation
Indices: 126003202--126003269 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
126003192 ATCAGTGCTG
126003202 AAATGGACACAATTACTTGGCAAAGAATTTCCA
1 AAATGGACACAATTACTTGGCAAAGAATTTCCA
126003235 AAATGGACACAATTACTTGGCAAAGAATTTCCA
1 AAATGGACACAATTACTTGGCAAAGAATTTCCA
126003268 AA
1 AA
126003270 TCTAGTTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.24
Consensus pattern (33 bp):
AAATGGACACAATTACTTGGCAAAGAATTTCCA
Found at i:126006447 original size:745 final size:751
Alignment explanation
Indices: 126005028--126006490 Score: 2241
Period size: 745 Copynumber: 2.0 Consensus size: 751
126005018 GTTTTTTTGA
126005028 GAAAAAAAGGGGAAAATGATGATAGTTATTGTCGCCCCAGTCTTACTTTGCATATATTAATGTCT
1 GAAAAAAAGGGGAAAATGATGATAGTTATTGTCGCCCCAGTCTTACTTTGCATATATTAATGTCT
126005093 TCATATGCAAAATTGGTGATTGACATTTTTATCTGATTTCCACTTGTAATTATTGTCTGCAGCTT
66 TCATATGCAAAATTGGTGATTGACATTTTTATCTGATTTCCACTTGTAATTATTGTCTGCAGCTT
* *
126005158 CACTTGTTTGCAAAATTTTGTTTAAAAATCTTATTTTTTTTTAAAATTTGATTGAATGTGGATAT
131 CACTTGTTTGCAAAATTTTGTCTAAAAATCTTA-TTTTTTTTAAAATTTGATAGAATGTGGATAT
126005223 GAAGAAAGATATTTGACACCCAGTCTGAGTTGCAATATGCCGAGACATTAGCGATCGACTATCTG
195 GAAGAAAGATATTTGACACCCAGTCTGAGTTGCAATATGCCGAGACATTAGCGATCGACTATCTG
*
126005288 ATCCATTTACCATTACTCCAATGAGGGGTGTAAACTGTAAAATATTCACTTTTATTGACTATATT
260 ATCCATTTACCATTACCCCAAT-AGGGGTGTAAACTGTAAAATATTCACTTTTATTGACTATATT
*
126005353 TTATTCCTTAATTTGCAAAAAATAAAAAATAAAATCAATAAGCTCTAGTTTTTTTATTCCTTAAT
324 TTATTCCTTAATTTGCAAAAAATAAAAAATAAAATCAATAAGCTCTAG-TTTTTTATTCCTTAAG
*
126005418 AAGATTTGATTTTTTCAAAAGATATGCAAGGAGGTGTGATGAAACTTATCCATCATTTCTGCATT
388 AAGATCTGATTTTTT-AAAAGATATGCAAGGAGGTGTGATGAAACTTATCCATCATTTCTGCATT
* * *
126005483 TGAATGATGAATACAAACATGTACTACCATCTGATCTCTTTTGCATATTTTCTTTACTTTTTTGG
452 TGAATGATGAATACAAACATGCACTACCATCTGATCTCTTTTGCATATTTTCTTTAATTTTCTGG
* * *
126005548 GAATTGGGGGTCAAATTTTAATTGATTTAATTGTTTCTTGCCTCGTTTTTCCGTCAGTTGCTGCA
517 GAATTGGGGGTCAAATTCTAATTGATTTAACTGTTTCTTGCCTCCTTTTTCCGTCAGTTGCTGCA
* *
126005613 ATCTATGATGAAAATGAATAATCAAACCTGATTTATGTTATGATGATTATATAAATAATCACCAT
582 ATCTATGATGAAAATGAATAATCAAACCTGATGTATCTTATGATGATTATATAAATAATCACCAT
* * * * *
126005678 CTTTCGGCTGAGATTGCTGATCTTTAATCAAACATTTTATTGTAGCTCAGTCCTGAAATTAATGA
647 CTTTCAGCTGAGATTGCTGATCTTTAATAAAAAATTATACTGTAGCTCAGTCCTGAAATTAATGA
126005743 TATGGGTCAAATGTTTTTGTTTGAGCTATGTTTTTCAAAG
712 TATGGGTCAAATGTTTTTGTTTGAGCTATGTTTTTCAAAG
* *
126005783 GAAAAGAA-GGGAACATGATGATAGTTATTGTCGCCCCAGTCTTACTTTGCATATATTAATGTCT
1 GAAAAAAAGGGGAAAATGATGATAGTTATTGTCGCCCCAGTCTTACTTTGCATATATTAATGTCT
126005847 TCATATGCAAAATTGGTGATTGACATTTTTATCTGATTTCCACTTGTAATTATTGTCTGCAGCTT
66 TCATATGCAAAATTGGTGATTGACATTTTTATCTGATTTCCACTTGTAATTATTGTCTGCAGCTT
126005912 CACTTGTTTGCAAAATTTTGTCTAAAAATCTTA-TTTTTTTAAAATTTGATAGAATGTGGATATG
131 CACTTGTTTGCAAAATTTTGTCTAAAAATCTTATTTTTTTTAAAATTTGATAGAATGTGGATATG
* * *
126005976 AAGATAGATATTTGACACCCAGTCTGAGTTGCAATATGCTGAGACATTAGCGATCGACTATCTTA
196 AAGAAAGATATTTGACACCCAGTCTGAGTTGCAATATGCCGAGACATTAGCGATCGACTATCTGA
* * **
126006041 TTCATTTACCATTACCCCAAT-GGGTTGTAAACTGTAAAATATTCTTTTTTA-TGA-T-TATTTT
261 TCCATTTACCATTACCCCAATAGGGGTGTAAACTGTAAAATATTCACTTTTATTGACTATATTTT
** *** * * * *
126006102 CAATTTTTTAATTTGCCTAACAGAAAT-TGCAAT-AAGTTAAT-AGTTCTA-TTTTTTA-TGCTT
326 --ATTCCTTAATTTG-C-AA-A-AAATAAAAAATAAAATCAATAAGCTCTAGTTTTTTATTCCTT
* * * * *
126006162 CAGAGGATCTGATTTTTT-TAAGATATGCAAGTAGGTGTGATGATACTTATCCATCATTTCTGCA
385 AAGAAGATCTGATTTTTTAAAAGATATGCAAGGAGGTGTGATGAAACTTATCCATCATTTCTGCA
* *
126006226 TTTGAATGATGAATACGAACATGCACTACCATCTGATCTCTTTTGCATATTTTGTTTAATTTTCT
450 TTTGAATGATGAATACAAACATGCACTACCATCTGATCTCTTTTGCATATTTTCTTTAATTTTCT
* * **
126006291 GGGAATTTGGGGTCAAATTCTAATTGATTTAACTGTTGT-TTTCCTCCTTTTTTTGTCAGTTGCT
515 GGGAATTGGGGGTCAAATTCTAATTGATTTAACTGTT-TCTTGCCTCCTTTTTCCGTCAGTTGCT
* * *
126006355 GCAATCTATGATGAAAATGAATCATCAAACCTGATGTGTCTTATGATGATTATATAAATATTCAC
579 GCAATCTATGATGAAAATGAATAATCAAACCTGATGTATCTTATGATGATTATATAAATAATCAC
* * * * *
126006420 CATCTTTCAGCTGAGATTGCTGATCTTTATTAAAAAATTATACTGTAGCTTAGTCTTGAAGTTAC
644 CATCTTTCAGCTGAGATTGCTGATCTTTAATAAAAAATTATACTGTAGCTCAGTCCTGAAATTAA
126006485 TGATAT
709 TGATAT
126006491 AGGTAAAAAG
Statistics
Matches: 646, Mismatches: 55, Indels: 24
0.89 0.08 0.03
Matches are distributed among these distances:
745 279 0.43
746 1 0.00
747 24 0.04
748 8 0.01
749 14 0.02
750 34 0.05
751 8 0.01
752 115 0.18
753 4 0.01
754 152 0.24
755 7 0.01
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (751 bp):
GAAAAAAAGGGGAAAATGATGATAGTTATTGTCGCCCCAGTCTTACTTTGCATATATTAATGTCT
TCATATGCAAAATTGGTGATTGACATTTTTATCTGATTTCCACTTGTAATTATTGTCTGCAGCTT
CACTTGTTTGCAAAATTTTGTCTAAAAATCTTATTTTTTTTAAAATTTGATAGAATGTGGATATG
AAGAAAGATATTTGACACCCAGTCTGAGTTGCAATATGCCGAGACATTAGCGATCGACTATCTGA
TCCATTTACCATTACCCCAATAGGGGTGTAAACTGTAAAATATTCACTTTTATTGACTATATTTT
ATTCCTTAATTTGCAAAAAATAAAAAATAAAATCAATAAGCTCTAGTTTTTTATTCCTTAAGAAG
ATCTGATTTTTTAAAAGATATGCAAGGAGGTGTGATGAAACTTATCCATCATTTCTGCATTTGAA
TGATGAATACAAACATGCACTACCATCTGATCTCTTTTGCATATTTTCTTTAATTTTCTGGGAAT
TGGGGGTCAAATTCTAATTGATTTAACTGTTTCTTGCCTCCTTTTTCCGTCAGTTGCTGCAATCT
ATGATGAAAATGAATAATCAAACCTGATGTATCTTATGATGATTATATAAATAATCACCATCTTT
CAGCTGAGATTGCTGATCTTTAATAAAAAATTATACTGTAGCTCAGTCCTGAAATTAATGATATG
GGTCAAATGTTTTTGTTTGAGCTATGTTTTTCAAAG
Found at i:126007574 original size:32 final size:32
Alignment explanation
Indices: 126007537--126007601 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
126007527 ACAATGATCT
126007537 TTGTTTTACAGCTTTCTGATACCTAGTTTTGA
1 TTGTTTTACAGCTTTCTGATACCTAGTTTTGA
126007569 TTGTTTTACAGCTTTCTGATACCTAGTTTTGA
1 TTGTTTTACAGCTTTCTGATACCTAGTTTTGA
126007601 T
1 T
126007602 CTTTTTTGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.51
Consensus pattern (32 bp):
TTGTTTTACAGCTTTCTGATACCTAGTTTTGA
Found at i:126014466 original size:48 final size:48
Alignment explanation
Indices: 126014410--126014504 Score: 181
Period size: 48 Copynumber: 2.0 Consensus size: 48
126014400 AAAGAGAAGT
*
126014410 TTGAAACTTTGAAACTCCATTCATTTTTTAATTCATTGCTTTAACAGG
1 TTGAAACTTTGAAACTACATTCATTTTTTAATTCATTGCTTTAACAGG
126014458 TTGAAACTTTGAAACTACATTCATTTTTTAATTCATTGCTTTAACAG
1 TTGAAACTTTGAAACTACATTCATTTTTTAATTCATTGCTTTAACAG
126014505 CTCAGTTGGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.31, C:0.16, G:0.09, T:0.44
Consensus pattern (48 bp):
TTGAAACTTTGAAACTACATTCATTTTTTAATTCATTGCTTTAACAGG
Found at i:126015438 original size:15 final size:16
Alignment explanation
Indices: 126015412--126015441 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
126015402 TTAATTATTT
126015412 TTTAACTTAATTTATA
1 TTTAACTTAATTTATA
126015428 TTTAA-TTAATTTAT
1 TTTAACTTAATTTAT
126015442 TATACTAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTAACTTAATTTATA
Found at i:126018795 original size:17 final size:18
Alignment explanation
Indices: 126018759--126018796 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
126018749 GATGAACCCT
*
126018759 AAAAGAAATTCTGGATTG
1 AAAAGAAATTCTGGAATG
*
126018777 AAAATAAATT-TGGAATG
1 AAAAGAAATTCTGGAATG
126018794 AAA
1 AAA
126018797 TGAATTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.53, C:0.03, G:0.18, T:0.26
Consensus pattern (18 bp):
AAAAGAAATTCTGGAATG
Found at i:126019031 original size:3 final size:3
Alignment explanation
Indices: 126019023--126019054 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
126019013 TGTATTACTT
126019023 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
126019055 TTCTTGTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:126022599 original size:2 final size:2
Alignment explanation
Indices: 126022592--126022621 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
126022582 AAAAACTGTC
*
126022592 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126022622 TCTTAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:126027137 original size:55 final size:55
Alignment explanation
Indices: 126027058--126027190 Score: 225
Period size: 55 Copynumber: 2.4 Consensus size: 55
126027048 ACAATTGCAA
*
126027058 GAAAAGTAATGGACAAAAAA-ATGTAAATGATAATGATGGGTGTATTGGAACAAAT
1 GAAAAGTAATGGA-AAAAAATATGTAAATGATAATGATGGGTGTATTGAAACAAAT
126027113 GAAAAGTAATGGAAAAAAATATGTAAATGATAATGATGGGTGTATTGAAACAAAT
1 GAAAAGTAATGGAAAAAAATATGTAAATGATAATGATGGGTGTATTGAAACAAAT
*
126027168 GAAAAGTAATGG-ACAAAATATGT
1 GAAAAGTAATGGAAAAAAATATGT
126027191 TATAGACTGG
Statistics
Matches: 75, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
54 16 0.21
55 59 0.79
ACGTcount: A:0.50, C:0.03, G:0.23, T:0.24
Consensus pattern (55 bp):
GAAAAGTAATGGAAAAAAATATGTAAATGATAATGATGGGTGTATTGAAACAAAT
Found at i:126030266 original size:210 final size:210
Alignment explanation
Indices: 126029916--126030755 Score: 1233
Period size: 210 Copynumber: 4.0 Consensus size: 210
126029906 GAGGATGATG
* * ** *
126029916 ATGGATGACTGATGACAGATTCCACTTGTGAAATTTTATGAATTTCATCACTTGTGCATAAATCA
1 ATGGATCACTGATGACAGATTCCACTTGTGAATTTTTATGAATTTCATCACTCATGTATAAATCA
* * * * * *
126029981 GTACATGGTAAATTGTCAGGATCAGAAGATTCCCCCGAGTTTTGCAACATATGTTCACCGGCAAA
66 GTACAGGGTAAATTGTCAGGATCAGAAGATTTCCCAGAGATTTGCAACATATGCTCACTGGCAAA
*
126030046 ATTCTGTGAGGAAACTGGATCAGGTAAACTCATGGAGATCCCATTG-TTAGAGATGATATTGGAT
131 ATTCTGTGAGGAAACTGGATCAGGTAAACTCATGGAGATCCCATTGCTT-GAAATGATATTGGAT
*
126030110 GAGGCAGAGGATACAA
195 GAGGCAGAGGATTCAA
* *
126030126 ATGGATCACTAATGACAGATTCCACTTGTGAATTTTTATGAATTTCACCACTCATGTATAAATCA
1 ATGGATCACTGATGACAGATTCCACTTGTGAATTTTTATGAATTTCATCACTCATGTATAAATCA
* *
126030191 GTACAGGGTAAATTGACAGGATCAGAAGATTTCCCAGAGATTTGCAACATCTGCTCACTGGCAAA
66 GTACAGGGTAAATTGTCAGGATCAGAAGATTTCCCAGAGATTTGCAACATATGCTCACTGGCAAA
* ** *
126030256 ATTCTGTGAGGAAATTGGATCAGGTAAACTTGTGGAGATCCCATTGCTTGCAATGATATTGGATG
131 ATTCTGTGAGGAAACTGGATCAGGTAAACTCATGGAGATCCCATTGCTTGAAATGATATTGGATG
126030321 AGGCAGAGGATTCAA
196 AGGCAGAGGATTCAA
* * *
126030336 ATGGATCATTGATGACAGATTCCACTTGAGAATTTTTTTGAATTTCATCACTCATGTATAAATCA
1 ATGGATCACTGATGACAGATTCCACTTGTGAATTTTTATGAATTTCATCACTCATGTATAAATCA
* * *
126030401 GTACAGGGTAAATTGTCAGTATCAGAAGATTTCCCTGAGATTTGCAACATATGTTCACTGGCAAA
66 GTACAGGGTAAATTGTCAGGATCAGAAGATTTCCCAGAGATTTGCAACATATGCTCACTGGCAAA
* * * * * *
126030466 ATTCTGCGAGGAAACTGGATCAGGTAAACTCGTGGAGATCTC-TTCACTTAAAATGATATCGGAT
131 ATTCTGTGAGGAAACTGGATCAGGTAAACTCATGGAGATCCCATT-GCTTGAAATGATATTGGAT
126030530 GAGGCAGAGGATTCAA
195 GAGGCAGAGGATTCAA
* * *
126030546 ATGGATTACTGATGACAGATACCACTTGTGAATTTTTATGAATTTCATCACTCATGTATAAACCA
1 ATGGATCACTGATGACAGATTCCACTTGTGAATTTTTATGAATTTCATCACTCATGTATAAATCA
*
126030611 G-A-ATGGGATAAATTGTCAGGATCAGAAGATTTCCCTA-AGATTTGCAACATCTGCTCACTGGC
66 GTACA-GGG-TAAATTGTCAGGATCAGAAGATTTCCC-AGAGATTTGCAACATATGCTCACTGGC
* *
126030673 AAAATTC-GCTGAGGGAACTGGATCAGGTAAACTCATGGAGATCTCATTGCTTGAAATGATATTG
128 AAAATTCTG-TGAGGAAACTGGATCAGGTAAACTCATGGAGATCCCATTGCTTGAAATGATATTG
126030737 GATGAGGCAGAGGATTCAA
192 GATGAGGCAGAGGATTCAA
126030756 TTATAGATTG
Statistics
Matches: 568, Mismatches: 55, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
208 1 0.00
209 7 0.01
210 556 0.98
211 4 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (210 bp):
ATGGATCACTGATGACAGATTCCACTTGTGAATTTTTATGAATTTCATCACTCATGTATAAATCA
GTACAGGGTAAATTGTCAGGATCAGAAGATTTCCCAGAGATTTGCAACATATGCTCACTGGCAAA
ATTCTGTGAGGAAACTGGATCAGGTAAACTCATGGAGATCCCATTGCTTGAAATGATATTGGATG
AGGCAGAGGATTCAA
Found at i:126032711 original size:16 final size:16
Alignment explanation
Indices: 126032666--126032704 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
126032656 ATACAACTAC
126032666 AAAAA-AAAA-AAAAA
1 AAAAAGAAAAGAAAAA
126032680 AAAAAGAAAAGAAAAA
1 AAAAAGAAAAGAAAAA
*
126032696 AGAAAGAAA
1 AAAAAGAAA
126032705 GATAAAATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.23
15 4 0.18
16 13 0.59
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAGAAAAA
Found at i:126035469 original size:22 final size:22
Alignment explanation
Indices: 126035399--126035469 Score: 63
Period size: 22 Copynumber: 3.1 Consensus size: 22
126035389 TCTGGCTATT
*
126035399 TTTTGTTATTATTATTTTGATGTCA
1 TTTTGTTATTATTA-TTTGA-AT-A
* *
126035424 TTTTGTTATTA-TATTATTACTA
1 TTTTGTTATTATTATT-TGAATA
*
126035446 TTTTGTTGTTATTATTTGAATA
1 TTTTGTTATTATTATTTGAATA
126035468 TT
1 TT
126035470 ATATAACTCT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
22 17 0.44
23 7 0.18
24 4 0.10
25 11 0.28
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.65
Consensus pattern (22 bp):
TTTTGTTATTATTATTTGAATA
Found at i:126035791 original size:33 final size:29
Alignment explanation
Indices: 126035754--126035813 Score: 75
Period size: 33 Copynumber: 1.9 Consensus size: 29
126035744 ACCAAATGTA
126035754 AATTAAAATAATATTTACTTTTTTATATTTTTT
1 AATTAAAAT-A-ATTTA-TTTTTTA-ATTTTTT
*
126035787 AATTAATATAATTTATTTTTTAATTTT
1 AATTAAAATAATTTATTTTTTAATTTT
126035814 AATTCAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 5 0.19
30 7 0.27
31 5 0.19
32 1 0.04
33 8 0.31
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (29 bp):
AATTAAAATAATTTATTTTTTAATTTTTT
Found at i:126035954 original size:12 final size:11
Alignment explanation
Indices: 126035930--126035963 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
126035920 TCTTTTATAT
126035930 TATATAT-ATA
1 TATATATGATA
126035940 TATATATGATGA
1 TATATATGAT-A
126035952 TATATATGATA
1 TATATATGATA
126035963 T
1 T
126035964 GTGTATGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.32
11 4 0.18
12 11 0.50
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (11 bp):
TATATATGATA
Found at i:126036117 original size:31 final size:31
Alignment explanation
Indices: 126036058--126036136 Score: 115
Period size: 31 Copynumber: 2.6 Consensus size: 31
126036048 ATGTAATATG
*
126036058 ATAATTAAATTAAATT-AATTATTATATAAT
1 ATAATTAAATTAAATTAAAATATTATATAAT
* *
126036088 ATGATTAAATTAAATTAAAATGTTATATAAT
1 ATAATTAAATTAAATTAAAATATTATATAAT
*
126036119 ATAATTAAATTAAGTTAA
1 ATAATTAAATTAAATTAA
126036137 TAGTGGGTCC
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 15 0.35
31 28 0.65
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (31 bp):
ATAATTAAATTAAATTAAAATATTATATAAT
Found at i:126049376 original size:6 final size:6
Alignment explanation
Indices: 126049366--126049401 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
126049356 GTAGAGATGA
* *
126049366 TGGCAA TGGCAG TGGCAT TGGCAT TGGCAT TGGCAT
1 TGGCAT TGGCAT TGGCAT TGGCAT TGGCAT TGGCAT
126049402 ACAATAATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (6 bp):
TGGCAT
Found at i:126053806 original size:60 final size:61
Alignment explanation
Indices: 126053732--126053853 Score: 228
Period size: 61 Copynumber: 2.0 Consensus size: 61
126053722 AAACAAAGGT
*
126053732 CCAAGCATGGACATATGAACGCCCAA-TTGGGCAGTGAACAAAAAGAACCAGAAAAAAGAA
1 CCAAGCATGGACATATGAACGCCCAATTTGGGCAGTGAACAAAAAGAAACAGAAAAAAGAA
126053792 CCAAGCATGGACATATGAACGCCCAATTTGGGCAGTGAACAAAAAGAAACAGAAAAAAGAA
1 CCAAGCATGGACATATGAACGCCCAATTTGGGCAGTGAACAAAAAGAAACAGAAAAAAGAA
126053853 C
1 C
126053854 ACCCTCGAAC
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
60 26 0.43
61 34 0.57
ACGTcount: A:0.48, C:0.20, G:0.21, T:0.11
Consensus pattern (61 bp):
CCAAGCATGGACATATGAACGCCCAATTTGGGCAGTGAACAAAAAGAAACAGAAAAAAGAA
Found at i:126054748 original size:1 final size:1
Alignment explanation
Indices: 126054742--126054767 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
126054732 CACAACTTAC
126054742 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
126054768 GCTAATTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:126057267 original size:21 final size:21
Alignment explanation
Indices: 126057243--126057283 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
126057233 TCTCTTCATC
*
126057243 CCTTCCCTCTCCTCTCCCTCT
1 CCTTCACTCTCCTCTCCCTCT
*
126057264 CCTTCACTTTCCTCTCCCTC
1 CCTTCACTCTCCTCTCCCTC
126057284 GCTTTCCTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.59, G:0.00, T:0.39
Consensus pattern (21 bp):
CCTTCACTCTCCTCTCCCTCT
Found at i:126057279 original size:15 final size:15
Alignment explanation
Indices: 126057259--126057298 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
126057249 CTCTCCTCTC
*
126057259 CCTCTCCTTCACTTT
1 CCTCTCCCTCACTTT
*
126057274 CCTCTCCCTCGCTTT
1 CCTCTCCCTCACTTT
*
126057289 CCTCACCCTC
1 CCTCTCCCTC
126057299 CTCCTCATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.05, C:0.55, G:0.03, T:0.38
Consensus pattern (15 bp):
CCTCTCCCTCACTTT
Found at i:126057321 original size:3 final size:3
Alignment explanation
Indices: 126057315--126057348 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
126057305 ATCACTTTCC
* *
126057315 GCA GCA GCA GCA GCC GCA GCA GCA GCA ACA GCA G
1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA G
126057349 AATAGTTCCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.32, C:0.35, G:0.32, T:0.00
Consensus pattern (3 bp):
GCA
Found at i:126057333 original size:15 final size:15
Alignment explanation
Indices: 126057313--126057341 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
126057303 TCATCACTTT
126057313 CCGCAGCAGCAGCAG
1 CCGCAGCAGCAGCAG
126057328 CCGCAGCAGCAGCA
1 CCGCAGCAGCAGCA
126057342 ACAGCAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.41, G:0.31, T:0.00
Consensus pattern (15 bp):
CCGCAGCAGCAGCAG
Found at i:126059740 original size:7 final size:7
Alignment explanation
Indices: 126059730--126059761 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
126059720 TTCCAACAAA
126059730 CTTCTCC
1 CTTCTCC
126059737 CTTCTCC
1 CTTCTCC
126059744 CTTCTCC
1 CTTCTCC
126059751 CTTCTCC
1 CTTCTCC
126059758 CTTC
1 CTTC
126059762 CTTATTACCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (7 bp):
CTTCTCC
Found at i:126062798 original size:22 final size:20
Alignment explanation
Indices: 126062772--126062813 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
126062762 AAATTTTAGT
*
126062772 ATTTAAAATTAAGTTATATTTA
1 ATTTAAAAATAA-TTA-ATTTA
126062794 ATTTAAAAATAATTAATTTA
1 ATTTAAAAATAATTAATTTA
126062814 CAGAATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 3 0.16
22 11 0.58
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTTAAAAATAATTAATTTA
Found at i:126062946 original size:23 final size:20
Alignment explanation
Indices: 126062915--126062960 Score: 65
Period size: 23 Copynumber: 2.1 Consensus size: 20
126062905 AAACTCTCAT
126062915 AAAAACAATATCATATGTAATA
1 AAAAACAATATCATAT-T-ATA
126062937 AAAAATCAATATCATATTATA
1 AAAAA-CAATATCATATTATA
126062958 AAA
1 AAA
126062961 GAACCAGAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.26
22 6 0.26
23 11 0.48
ACGTcount: A:0.61, C:0.09, G:0.02, T:0.28
Consensus pattern (20 bp):
AAAAACAATATCATATTATA
Found at i:126066845 original size:26 final size:25
Alignment explanation
Indices: 126066809--126066858 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
126066799 TGTATAAAAT
* *
126066809 TGAATCAAAATCAAAGTTTTATGTAA
1 TGAACCAAAATCAAA-CTTTATGTAA
*
126066835 TGAACCAAAATTAAACTTTATGTA
1 TGAACCAAAATCAAACTTTATGTA
126066859 CCAAACTGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (25 bp):
TGAACCAAAATCAAACTTTATGTAA
Found at i:126068789 original size:29 final size:29
Alignment explanation
Indices: 126068753--126068811 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
126068743 GAAGCCTGGA
126068753 GACTGTTTGTTCCCTACGTTAAACTGGTT
1 GACTGTTTGTTCCCTACGTTAAACTGGTT
*
126068782 GACTGTTTGTTCCCTATGTTAAACTGGTT
1 GACTGTTTGTTCCCTACGTTAAACTGGTT
126068811 G
1 G
126068812 CTGCTCAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42
Consensus pattern (29 bp):
GACTGTTTGTTCCCTACGTTAAACTGGTT
Found at i:126074440 original size:47 final size:48
Alignment explanation
Indices: 126074318--126074496 Score: 203
Period size: 47 Copynumber: 3.8 Consensus size: 48
126074308 ATGTAACCCG
* * * *
126074318 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCATTCACAT
*
126074364 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-C-A-TTCACAT
*
126074414 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCATT-CACAT
*
126074458 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
126074497 TTCAACCATC
Statistics
Matches: 114, Mismatches: 7, Indels: 21
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (48 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCATTCACAT
Found at i:126074486 original size:94 final size:93
Alignment explanation
Indices: 126074326--126074496 Score: 297
Period size: 94 Copynumber: 1.8 Consensus size: 93
126074316 CGCCATAAGT
* * *
126074326 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
126074391 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
126074419 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
126074484 ACGAGTTCGGATG
65 ACGAGTTCGGATG
126074497 TTCAACCATC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 43 0.59
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:126074942 original size:30 final size:30
Alignment explanation
Indices: 126074908--126074967 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
126074898 CCTTAATACG
126074908 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
126074938 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
126074968 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:126081965 original size:47 final size:48
Alignment explanation
Indices: 126081845--126082022 Score: 194
Period size: 47 Copynumber: 3.8 Consensus size: 48
126081835 TGTAACCCGC
* * * *
126081845 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G--GCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCATTCACAT
*
126081890 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-C-A-TTCACAT
*
126081940 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCATT-CACAT
*
126081984 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
126082023 TTCAACCATC
Statistics
Matches: 113, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 34 0.30
46 3 0.03
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (48 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCATTCACAT
Found at i:126082012 original size:94 final size:92
Alignment explanation
Indices: 126081853--126082022 Score: 295
Period size: 94 Copynumber: 1.8 Consensus size: 92
126081843 GCCCATAAGT
* *
126081853 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
126081918 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
126081945 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATT-CACATCCATAAGTGAACTCGGACTCAACTCA
126082010 ACGAGTTCGGATG
64 ACGAGTTCGGATG
126082023 TTCAACCATC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 27 0.37
93 3 0.04
94 43 0.59
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:126087464 original size:31 final size:30
Alignment explanation
Indices: 126087429--126087493 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
126087419 TTAGTAAAGG
*
126087429 TAAAATTGTAGTTT-ATCCTCCTTAAAAATGA
1 TAAAATTGTAATTTAAT-CT-CTTAAAAATGA
* *
126087460 TAAAATTTTAATTTAATCTCTTAAAAATTA
1 TAAAATTGTAATTTAATCTCTTAAAAATGA
126087490 TAAA
1 TAAA
126087494 GATTTAGACT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 14 0.47
31 14 0.47
32 2 0.07
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.42
Consensus pattern (30 bp):
TAAAATTGTAATTTAATCTCTTAAAAATGA
Found at i:126097227 original size:46 final size:44
Alignment explanation
Indices: 126097123--126097230 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
126097113 TGTCTTTGAC
** * * *
126097123 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
126097167 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
126097213 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
126097231 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:126103355 original size:46 final size:44
Alignment explanation
Indices: 126103251--126103358 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
126103241 TGTCTTTGAC
** * * *
126103251 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
126103295 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
126103341 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
126103359 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:126109604 original size:83 final size:84
Alignment explanation
Indices: 126109493--126109660 Score: 266
Period size: 83 Copynumber: 2.0 Consensus size: 84
126109483 AATTCTAACC
* * *
126109493 ATCACTTACATATAGAATCAAAGATATTTTATTGAAAATCTTTTAGAAAAATGATATTTGTTAAC
1 ATCACTTACATATAGAATCAAAGATATTTTACTGAAAATCTTTTAAAAAAATGATAATTGTTAAC
* *
126109558 CTGTGAGGTAAATAAGGGA
66 CTATGAGGCAAATAAGGGA
126109577 ATCACTTACATATA-AATCAAAGATATTTTACTGAAAATCTTTTAAAAAAATGATAATTGTTAAC
1 ATCACTTACATATAGAATCAAAGATATTTTACTGAAAATCTTTTAAAAAAATGATAATTGTTAAC
* *
126109641 TTATGAGGCGAATAAGGGA
66 CTATGAGGCAAATAAGGGA
126109660 A
1 A
126109661 AAAAGATAGT
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
83 63 0.82
84 14 0.18
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.33
Consensus pattern (84 bp):
ATCACTTACATATAGAATCAAAGATATTTTACTGAAAATCTTTTAAAAAAATGATAATTGTTAAC
CTATGAGGCAAATAAGGGA
Found at i:126114659 original size:29 final size:31
Alignment explanation
Indices: 126114554--126114684 Score: 85
Period size: 31 Copynumber: 4.4 Consensus size: 31
126114544 TTTTAAGGGT
* *
126114554 TGCTCACATAAAGGT-TAAAC-CTTTCAAAA
1 TGCTCAAATAAAGGTCAAAACTCTTTCAAAA
* ** *
126114583 TGCTCATAT-AAGGTCGTAACTTTTTACAAAA
1 TGCTCAAATAAAGGTCAAAACTCTTT-CAAAA
* * *
126114614 TACTTAAATGAAA-GTC-AAAC-CTTTCAAAG
1 TGCTCAAAT-AAAGGTCAAAACTCTTTCAAAA
* * *
126114643 TGCTCAAATAAAGGTCAAAACTTTTTGAAAG
1 TGCTCAAATAAAGGTCAAAACTCTTTCAAAA
*
126114674 TGTTCAAATAA
1 TGCTCAAATAA
126114685 GAGCTTCTCA
Statistics
Matches: 79, Mismatches: 15, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
28 8 0.10
29 25 0.32
30 10 0.13
31 31 0.39
32 3 0.04
33 2 0.03
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (31 bp):
TGCTCAAATAAAGGTCAAAACTCTTTCAAAA
Found at i:126115425 original size:22 final size:23
Alignment explanation
Indices: 126115394--126115444 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
126115384 CAAATAATTT
*
126115394 AAAAATTATAAATATA-TTT-TA
1 AAAAATTATAAATAAAGTTTATA
*
126115415 AAAAATCTATATATAAAGTTTATA
1 AAAAAT-TATAAATAAAGTTTATA
126115439 AAAAAT
1 AAAAAT
126115445 AACATAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 6 0.24
22 8 0.32
23 3 0.12
24 8 0.32
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (23 bp):
AAAAATTATAAATAAAGTTTATA
Found at i:126123471 original size:42 final size:41
Alignment explanation
Indices: 126123425--126123546 Score: 172
Period size: 42 Copynumber: 2.9 Consensus size: 41
126123415 AATCTGATGG
* * *
126123425 TGCATTTGAACCACCTAGGCTCTCCAAGGACAAATCCGATAC
1 TGCATTTCAATCACCCAGGCTCTCCAAGGACAAA-CCGATAC
*
126123467 TGCATTTCAATCGCCCAGGCTCTCCAAGGACAAACCAGATAC
1 TGCATTTCAATCACCCAGGCTCTCCAAGGACAAACC-GATAC
* *
126123509 TGCATTTCAATCACCCAGGCTCTCGAGGGACAAACCGA
1 TGCATTTCAATCACCCAGGCTCTCCAAGGACAAACCGA
126123547 ATTCTGACGT
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
41 4 0.06
42 68 0.94
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (41 bp):
TGCATTTCAATCACCCAGGCTCTCCAAGGACAAACCGATAC
Found at i:126123560 original size:42 final size:41
Alignment explanation
Indices: 126123441--126123572 Score: 144
Period size: 42 Copynumber: 3.1 Consensus size: 41
126123431 TGAACCACCT
*
126123441 AGGCTCTCCAAGGACAAATCC-GATACTGCATTTCAATCGCCC
1 AGGCTCTCCAAGGACAAA-CCAGATACTGCAGTTCAATC-CCC
*
126123483 AGGCTCTCCAAGGACAAACCAGATACTGCATTTCAATCACCC
1 AGGCTCTCCAAGGACAAACCAGATACTGCAGTTCAATC-CCC
* * *
126123525 AGGCTCTCGAGGGACAAACC-GAATTCTG-ACGTTCAATCCCC
1 AGGCTCTCCAAGGACAAACCAG-ATACTGCA-GTTCAATCCCC
126123566 TAGGCTC
1 -AGGCTC
126123573 CCTGAGATAG
Statistics
Matches: 81, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
41 7 0.09
42 74 0.91
ACGTcount: A:0.29, C:0.33, G:0.18, T:0.20
Consensus pattern (41 bp):
AGGCTCTCCAAGGACAAACCAGATACTGCAGTTCAATCCCC
Found at i:126126411 original size:16 final size:16
Alignment explanation
Indices: 126126390--126126422 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
126126380 AATTGGTGTA
126126390 ATTTTAA-TTGATATTT
1 ATTTTAAGTTG-TATTT
126126406 ATTTTAAGTTGTATTT
1 ATTTTAAGTTGTATTT
126126422 A
1 A
126126423 AAGAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (16 bp):
ATTTTAAGTTGTATTT
Found at i:126127282 original size:21 final size:21
Alignment explanation
Indices: 126127257--126127297 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
126127247 TATGCGAAAC
126127257 TTTATATATTTTTTA-ATTTTT
1 TTTATA-ATTTTTTACATTTTT
126127278 TTTATAATTTTTTACATTTT
1 TTTATAATTTTTTACATTTT
126127298 AATAATTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTATAATTTTTTACATTTTT
Found at i:126130306 original size:2 final size:2
Alignment explanation
Indices: 126130301--126130325 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
126130291 ATATATACAT
126130301 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
126130326 TTGGCTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:126134388 original size:6 final size:6
Alignment explanation
Indices: 126134377--126134419 Score: 68
Period size: 6 Copynumber: 7.0 Consensus size: 6
126134367 GGCCACCGCA
*
126134377 AAAAAT AAAAAT AAAAAT AAAAAAT AAAAAT AAAAAG AAAAAT
1 AAAAAT AAAAAT AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT
126134420 TGGAATTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
6 28 0.82
7 6 0.18
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:126134399 original size:13 final size:13
Alignment explanation
Indices: 126134377--126134412 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
126134367 GGCCACCGCA
126134377 AAAAAT-AAAAAT
1 AAAAATAAAAAAT
126134389 AAAAATAAAAAAT
1 AAAAATAAAAAAT
126134402 AAAAATAAAAA
1 AAAAATAAAAA
126134413 GAAAAATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 6 0.26
13 17 0.74
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:126134400 original size:19 final size:19
Alignment explanation
Indices: 126134376--126134418 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
126134366 TGGCCACCGC
*
126134376 AAAAAATAAAAATAAAAAT
1 AAAAAATAAAAATAAAAAG
126134395 AAAAAATAAAAATAAAAAG
1 AAAAAATAAAAATAAAAAG
126134414 AAAAA
1 AAAAA
126134419 TTGGAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.02, T:0.12
Consensus pattern (19 bp):
AAAAAATAAAAATAAAAAG
Found at i:126149351 original size:42 final size:43
Alignment explanation
Indices: 126149274--126149368 Score: 147
Period size: 42 Copynumber: 2.2 Consensus size: 43
126149264 GATTGTTTCC
*
126149274 TTTAATTTTAAAAGACATACAAAAATAAAATAATTTATATTTT
1 TTTAATTTTAAAAGACATACAAAAATAAAATAATTTATATTTG
* *
126149317 TTTAATTTTAAAAGATATA-TAAAATAAAATAATTTATATTTG
1 TTTAATTTTAAAAGACATACAAAAATAAAATAATTTATATTTG
*
126149359 TATAATTTTA
1 TTTAATTTTA
126149369 TATCATCATT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
42 30 0.62
43 18 0.38
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.45
Consensus pattern (43 bp):
TTTAATTTTAAAAGACATACAAAAATAAAATAATTTATATTTG
Found at i:126151758 original size:31 final size:30
Alignment explanation
Indices: 126151713--126151779 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
126151703 TAAACCTCTT
126151713 AAAA-TTTTTAAAAATTCTT-ATTAAATCATCC
1 AAAAGTTTTTAAAAATT-TTAATTAAATC--CC
*
126151744 AAAAGTTTTT-AAAATTTTAATTATATCCC
1 AAAAGTTTTTAAAAATTTTAATTAAATCCC
126151773 AAAAGTT
1 AAAAGTT
126151780 AACATCAAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 9 0.27
30 2 0.06
31 17 0.52
32 5 0.15
ACGTcount: A:0.45, C:0.10, G:0.03, T:0.42
Consensus pattern (30 bp):
AAAAGTTTTTAAAAATTTTAATTAAATCCC
Found at i:126156805 original size:15 final size:14
Alignment explanation
Indices: 126156785--126156839 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 14
126156775 TCATTAGAAG
126156785 AACCAGCGGTAGCTA
1 AACCAGCGGTAGC-A
* *
126156800 AACCAGTGATAGCAA
1 AACCAGCGGTAGC-A
*
126156815 AACCAGCGGTAACA
1 AACCAGCGGTAGCA
126156829 GAACCAGCGGT
1 -AACCAGCGGT
126156840 TTTTGGCCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 1 0.03
15 32 0.97
ACGTcount: A:0.38, C:0.25, G:0.25, T:0.11
Consensus pattern (14 bp):
AACCAGCGGTAGCA
Found at i:126158244 original size:29 final size:29
Alignment explanation
Indices: 126158202--126158276 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 29
126158192 AAATTTTAAA
*
126158202 TTAATAAA-AATAAAA-TTATATTTTAACTT
1 TTAA-AAATAATAAAATTTA-ATTTAAACTT
*
126158231 TTAAAAATAATAAATATTTAATTTAAATTT
1 TTAAAAATAATAAA-ATTTAATTTAAACTT
*
126158261 TTAAAAATATTAAAAT
1 TTAAAAATAATAAAAT
126158277 ATAAATTATT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
28 3 0.08
29 12 0.30
30 22 0.55
31 3 0.08
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (29 bp):
TTAAAAATAATAAAATTTAATTTAAACTT
Found at i:126158288 original size:15 final size:17
Alignment explanation
Indices: 126158262--126158302 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
126158252 TTTAAATTTT
*
126158262 TAAAAATATTAAAA-TA
1 TAAAATTATTAAAACTA
126158278 T-AAATTATTAAAACTA
1 TAAAATTATTAAAACTA
126158294 TAAAATTAT
1 TAAAATTAT
126158303 ATTTTTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 11 0.50
16 4 0.18
17 7 0.32
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
TAAAATTATTAAAACTA
Found at i:126158303 original size:24 final size:25
Alignment explanation
Indices: 126158242--126158303 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 25
126158232 TAAAAATAAT
* *
126158242 AAATATT-TAATT-TAAATTTTTAA
1 AAATATTAAAATTATAAATTATTAA
126158265 AAATATTAAAA-TATAAATTATTAA
1 AAATATTAAAATTATAAATTATTAA
*
126158289 AACTA-TAAAATTATA
1 AAATATTAAAATTATA
126158304 TTTTTATCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
23 13 0.39
24 20 0.61
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (25 bp):
AAATATTAAAATTATAAATTATTAA
Found at i:126158704 original size:15 final size:16
Alignment explanation
Indices: 126158667--126158707 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
126158657 ATCCTCAAAA
126158667 TATAATTTTATTATTT
1 TATAATTTTATTATTT
126158683 TAGTAA-TTTA-TATTTT
1 TA-TAATTTTATTA-TTT
126158699 TATAATTTT
1 TATAATTTT
126158708 TTGAATAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 5 0.23
16 14 0.64
17 3 0.14
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (16 bp):
TATAATTTTATTATTT
Found at i:126164772 original size:12 final size:13
Alignment explanation
Indices: 126164739--126164770 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
126164729 TCTCAAAAAT
126164739 ACTTTTTCATAAC
1 ACTTTTTCATAAC
126164752 ACTTTTTCATAAC
1 ACTTTTTCATAAC
*
126164765 GCTTTT
1 ACTTTT
126164771 CAAAAGTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.25, C:0.22, G:0.03, T:0.50
Consensus pattern (13 bp):
ACTTTTTCATAAC
Found at i:126164782 original size:13 final size:13
Alignment explanation
Indices: 126164766--126164791 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
126164756 TTTCATAACG
126164766 CTTTTCAAAAGTA
1 CTTTTCAAAAGTA
126164779 CTTTTCAAAAGTA
1 CTTTTCAAAAGTA
126164792 TTGCAAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
CTTTTCAAAAGTA
Found at i:126166707 original size:6 final size:6
Alignment explanation
Indices: 126166696--126166753 Score: 107
Period size: 6 Copynumber: 9.7 Consensus size: 6
126166686 TCTTTCAGCT
*
126166696 ATCAAA ATCAAA ATCAAA ATCAAA ACCAAA ATCAAA ATCAAA ATCAAA
1 ATCAAA ATCAAA ATCAAA ATCAAA ATCAAA ATCAAA ATCAAA ATCAAA
126166744 ATCAAA ATCA
1 ATCAAA ATCA
126166754 GCCTTGACAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.66, C:0.19, G:0.00, T:0.16
Consensus pattern (6 bp):
ATCAAA
Found at i:126181997 original size:20 final size:20
Alignment explanation
Indices: 126181974--126182011 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
126181964 TTTGGGTTCT
126181974 TAATTTCTTTT-TTTTTTTAG
1 TAATTT-TTTTCTTTTTTTAG
126181994 TAATTTTTTTCTTTTTTT
1 TAATTTTTTTCTTTTTTT
126182012 TGATTTTGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.13, C:0.05, G:0.03, T:0.79
Consensus pattern (20 bp):
TAATTTTTTTCTTTTTTTAG
Found at i:126187589 original size:11 final size:11
Alignment explanation
Indices: 126187573--126187598 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
126187563 ATATTTATAA
126187573 GTTAAATTATT
1 GTTAAATTATT
126187584 GTTAAATTATT
1 GTTAAATTATT
126187595 GTTA
1 GTTA
126187599 TCTATTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.54
Consensus pattern (11 bp):
GTTAAATTATT
Found at i:126189105 original size:2 final size:2
Alignment explanation
Indices: 126189098--126189123 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
126189088 TTGTATTAAA
126189098 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
126189124 TTTTTCTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126222436 original size:30 final size:31
Alignment explanation
Indices: 126222402--126222481 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 31
126222392 ATTTTTTTAT
*
126222402 AAATTTTCATAAAACCT-CAAAAAATTTTGA
1 AAATTCTCATAAAACCTACAAAAAATTTTGA
* * * * * *
126222432 AAATTGTAATTAGACCTACCAAAATTTTTGA
1 AAATTCTCATAAAACCTACAAAAAATTTTGA
126222463 AAATTCTCACTAAAACCTA
1 AAATTCTCA-TAAAACCTA
126222482 TAAAGTTTTT
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
30 13 0.34
31 18 0.47
32 7 0.18
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.33
Consensus pattern (31 bp):
AAATTCTCATAAAACCTACAAAAAATTTTGA
Found at i:126223216 original size:24 final size:24
Alignment explanation
Indices: 126223188--126223234 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
126223178 TGAGAAAACA
126223188 AATGAAAAAGAGAAGGAAAAGAGT
1 AATGAAAAAGAGAAGGAAAAGAGT
* * *
126223212 AATGAGAAAGTGAAGGGAAAGAG
1 AATGAAAAAGAGAAGGAAAAGAG
126223235 ATGAAGTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.34, T:0.09
Consensus pattern (24 bp):
AATGAAAAAGAGAAGGAAAAGAGT
Found at i:126224424 original size:5 final size:5
Alignment explanation
Indices: 126224416--126224458 Score: 50
Period size: 5 Copynumber: 8.0 Consensus size: 5
126224406 AACCTAAATT
*
126224416 AATAA AATAA AATAA AATAAA AATAAA TAATAA AACAA AATAA
1 AATAA AATAA AATAA AAT-AA AAT-AA -AATAA AATAA AATAA
126224459 TATCTTCCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 21 0.62
6 10 0.29
7 3 0.09
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:126224867 original size:18 final size:20
Alignment explanation
Indices: 126224820--126224855 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
126224810 AGCAACTGCT
126224820 TAACAGTCTAACTAACCAGC
1 TAACAGTCTAACTAACCAGC
126224840 TAACAG-CTAAC-AACCA
1 TAACAGTCTAACTAACCA
126224856 CTGATAGTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.31
19 5 0.31
20 6 0.38
ACGTcount: A:0.44, C:0.31, G:0.08, T:0.17
Consensus pattern (20 bp):
TAACAGTCTAACTAACCAGC
Found at i:126239764 original size:30 final size:30
Alignment explanation
Indices: 126239730--126239800 Score: 74
Period size: 31 Copynumber: 2.4 Consensus size: 30
126239720 AGCCTATATC
* *
126239730 TTTATAGTTTTTA-AAAGATTAAATTAAAAT
1 TTTATA-TTTTTAGAAAGATAAAAATAAAAT
* *
126239760 TTTATTATTTTTAGAGAGATAAAAATATAAT
1 TTTA-TATTTTTAGAAAGATAAAAATAAAAT
126239791 TTTAT-TTTTT
1 TTTATATTTTT
126239801 CTAATTTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 5 0.14
30 11 0.31
31 19 0.54
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (30 bp):
TTTATATTTTTAGAAAGATAAAAATAAAAT
Found at i:126239838 original size:18 final size:18
Alignment explanation
Indices: 126239803--126239839 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
126239793 TATTTTTTCT
*
126239803 AATTTAAAATTTTAAAAA
1 AATTTAAAATTCTAAAAA
126239821 AATTTAAAATATCTAAAAA
1 AATTTAAAAT-TCTAAAAA
126239840 TAAAAAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (18 bp):
AATTTAAAATTCTAAAAA
Found at i:126245140 original size:5 final size:5
Alignment explanation
Indices: 126245130--126245170 Score: 73
Period size: 5 Copynumber: 8.0 Consensus size: 5
126245120 AATAATTAAG
126245130 TATAT TATAT TATAT TATAT TATAT TATAT TATTAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT TATAT
126245171 ATAAAAGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 30 0.86
6 5 0.14
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:126245240 original size:31 final size:30
Alignment explanation
Indices: 126245205--126245265 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
126245195 GAAACAGAAT
*
126245205 GAAAGCAAACGAAAC-AGAGAAGAACAGGGGA
1 GAAAG-AAACGAAACAAGA-AAGAAAAGGGGA
* *
126245236 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAACAAGAAAGAAAAGGGGA
126245266 AATAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGAAAGAAAAGGGGA
Found at i:126246840 original size:39 final size:39
Alignment explanation
Indices: 126246733--126246867 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
126246723 GACCTCGAGT
* * *
126246733 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** ** *
126246774 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
126246812 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
126246851 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
126246868 CCATATTGGT
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 19 0.25
39 36 0.47
40 4 0.05
41 15 0.20
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:126247619 original size:12 final size:12
Alignment explanation
Indices: 126247602--126247626 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
126247592 CGAAATTTTT
126247602 ATAAAAAAAAAA
1 ATAAAAAAAAAA
126247614 ATAAAAAAAAAA
1 ATAAAAAAAAAA
126247626 A
1 A
126247627 ATTTGGAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (12 bp):
ATAAAAAAAAAA
Found at i:126247622 original size:13 final size:13
Alignment explanation
Indices: 126247604--126247628 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
126247594 AAATTTTTAT
126247604 AAAAAAAAAAATA
1 AAAAAAAAAAATA
126247617 AAAAAAAAAAAT
1 AAAAAAAAAAAT
126247629 TTGGAATACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (13 bp):
AAAAAAAAAAATA
Found at i:126252932 original size:5 final size:5
Alignment explanation
Indices: 126252922--126252962 Score: 73
Period size: 5 Copynumber: 8.0 Consensus size: 5
126252912 AATAATTAAG
126252922 TATAT TATAT TATAT TATAT TATAT TATAT TATTAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT TATAT
126252963 ATAAAAGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 30 0.86
6 5 0.14
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:126253032 original size:31 final size:30
Alignment explanation
Indices: 126252997--126253057 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
126252987 GAAACAGAAT
*
126252997 GAAAGCAAACGAAAC-AGAGAAGAACAGGGGA
1 GAAAG-AAACGAAACAAGA-AAGAAAAGGGGA
* *
126253028 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAACAAGAAAGAAAAGGGGA
126253058 AATAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGAAAGAAAAGGGGA
Found at i:126254631 original size:39 final size:39
Alignment explanation
Indices: 126254524--126254658 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
126254514 GACCTCGAGT
* * *
126254524 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** ** *
126254565 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
126254603 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
126254642 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
126254659 CCATATTGGT
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 19 0.25
39 36 0.47
40 4 0.05
41 15 0.20
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:126256099 original size:23 final size:25
Alignment explanation
Indices: 126256073--126256119 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
126256063 TATCATTCAT
*
126256073 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
126256096 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
126256120 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:126256440 original size:46 final size:46
Alignment explanation
Indices: 126256380--126256729 Score: 446
Period size: 46 Copynumber: 8.0 Consensus size: 46
126256370 TTTGACGTGA
* * * * * * *
126256380 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTAATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
126256426 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
126256472 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
126256518 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
126256564 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
126256602 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
126256648 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
126256686 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
126256730 AGAGCACACT
Statistics
Matches: 271, Mismatches: 16, Indels: 34
0.84 0.05 0.11
Matches are distributed among these distances:
38 65 0.24
39 2 0.01
40 6 0.02
41 2 0.01
43 2 0.01
44 6 0.02
45 6 0.02
46 182 0.67
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:126256496 original size:92 final size:84
Alignment explanation
Indices: 126256424--126256729 Score: 486
Period size: 84 Copynumber: 3.5 Consensus size: 84
126256414 TTTCTGTAAT
** * * *
126256424 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
126256489 ACCATGGTCTTACACATCTCATATCAG
66 ACCATGGTCTT--ACA---C--A-CAG
126256516 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
126256581 ACCATGGTCTTACACACAG
66 ACCATGGTCTTACACACAG
*
126256600 GTTGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
126256665 ACCATGGTCTTACACACAG
66 ACCATGGTCTTACACACAG
126256684 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
126256730 AGAGCACACT
Statistics
Matches: 207, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
84 131 0.63
85 1 0.00
87 1 0.00
90 3 0.01
92 71 0.34
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.37
Consensus pattern (84 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
ACCATGGTCTTACACACAG
Found at i:126256610 original size:38 final size:38
Alignment explanation
Indices: 126256559--126256718 Score: 239
Period size: 38 Copynumber: 4.0 Consensus size: 38
126256549 CATTTCATAT
126256559 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
126256597 CAGGTTGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A
126256642 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 -CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
126256681 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
126256719 TTTCATATCA
Statistics
Matches: 112, Mismatches: 2, Indels: 16
0.86 0.02 0.12
Matches are distributed among these distances:
38 70 0.62
39 1 0.01
40 3 0.03
41 1 0.01
43 1 0.01
44 3 0.03
45 1 0.01
46 32 0.29
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:126259831 original size:21 final size:21
Alignment explanation
Indices: 126259762--126259832 Score: 115
Period size: 21 Copynumber: 3.4 Consensus size: 21
126259752 GACACATAAA
* *
126259762 GTGCCTAAAACGACACACGAG
1 GTGCCTGATACGACACACGAG
126259783 GTGCCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
*
126259804 GTGCCTGATACGACACGCGAG
1 GTGCCTGATACGACACACGAG
126259825 GTGCCTGA
1 GTGCCTGA
126259833 AATGCGACAC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.28, C:0.28, G:0.30, T:0.14
Consensus pattern (21 bp):
GTGCCTGATACGACACACGAG
Found at i:126259983 original size:23 final size:23
Alignment explanation
Indices: 126259940--126259984 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
126259930 TTAATAGGGT
*
126259940 ATTTCAATTCTCAATTCACTTTC
1 ATTTCAATTCTAAATTCACTTTC
*
126259963 ATTTCCATTCTAAGATT-ACTTT
1 ATTTCAATTCTAA-ATTCACTTT
126259985 TCAATTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.27, C:0.22, G:0.02, T:0.49
Consensus pattern (23 bp):
ATTTCAATTCTAAATTCACTTTC
Found at i:126261272 original size:22 final size:22
Alignment explanation
Indices: 126261208--126261273 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
126261198 TTATGCACTA
* *
126261208 TTAAACAGAGAGCACTAAAGTA
1 TTAAACAGAGAGCACTAATGTG
* *
126261230 TTATACAGATAGCAC-AGATGTG
1 TTAAACAGAGAGCACTA-ATGTG
*
126261252 TTAAACGGAGAGCACTAATGTG
1 TTAAACAGAGAGCACTAATGTG
126261274 CTAATAATCA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.23
Consensus pattern (22 bp):
TTAAACAGAGAGCACTAATGTG
Found at i:126261972 original size:18 final size:19
Alignment explanation
Indices: 126261934--126261972 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
126261924 TGGTTCAAGC
*
126261934 TTTCAATCTCATATCTCAA
1 TTTCAATCTCACATCTCAA
*
126261953 TTTCAAT-TCACATTTCAA
1 TTTCAATCTCACATCTCAA
126261971 TT
1 TT
126261973 CATAATTCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCACATCTCAA
Found at i:126262275 original size:11 final size:11
Alignment explanation
Indices: 126262259--126262283 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
126262249 TTCAGCTGAT
126262259 GAAAATGAAGA
1 GAAAATGAAGA
126262270 GAAAATGAAGA
1 GAAAATGAAGA
126262281 GAA
1 GAA
126262284 TTCTAGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.28, T:0.08
Consensus pattern (11 bp):
GAAAATGAAGA
Found at i:126264675 original size:24 final size:25
Alignment explanation
Indices: 126264620--126264678 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
126264610 TATTTCATTA
*
126264620 AATAAA-AAAT-T-TTTAAAAATAT
1 AATAAACAAATATATTTAAAAACAT
*
126264642 AATAATCAAATATATTTAAAAACAT
1 AATAAACAAATATATTTAAAAACAT
126264667 AA-AAACAAATAT
1 AATAAACAAATAT
126264679 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
22 5 0.16
23 4 0.13
24 10 0.32
25 12 0.39
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (25 bp):
AATAAACAAATATATTTAAAAACAT
Found at i:126264698 original size:21 final size:20
Alignment explanation
Indices: 126264657--126264704 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
126264647 TCAAATATAT
* *
126264657 TTAAAAACATAAAAACAAATA
1 TTAAAAAAATAAAAA-TAATA
126264678 TTAAAACAAATAAAAATAATA
1 TTAAAA-AAATAAAAATAATA
*
126264699 CTAAAA
1 TTAAAA
126264705 TAATTTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.71, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAAAAATAAAAATAATA
Found at i:126264742 original size:35 final size:33
Alignment explanation
Indices: 126264678--126264742 Score: 78
Period size: 35 Copynumber: 1.9 Consensus size: 33
126264668 AAAACAAATA
*
126264678 TTAAAACAAATAAAAATAATACTAAAATAATTT
1 TTAAAACAAATAAAAATAATAATAAAATAATTT
*
126264711 TTAAAAC-AATACACAAATTAATAATATAATAA
1 TTAAAACAAATA-A-AAA-TAATAATAAAATAA
126264743 AAAATAGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 4 0.15
33 8 0.30
34 3 0.11
35 12 0.44
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (33 bp):
TTAAAACAAATAAAAATAATAATAAAATAATTT
Found at i:126269773 original size:15 final size:16
Alignment explanation
Indices: 126269747--126269776 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
126269737 GCATTCTAGA
126269747 CAATTCTTATTCTTTT
1 CAATTCTTATTCTTTT
126269763 CAATT-TTATTCTTT
1 CAATTCTTATTCTTT
126269777 GCTAAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.17, G:0.00, T:0.63
Consensus pattern (16 bp):
CAATTCTTATTCTTTT
Found at i:126271391 original size:36 final size:36
Alignment explanation
Indices: 126271332--126271404 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
126271322 TTTTGAAACC
*
126271332 ATTAACTATTTTGTTTTTGGTTACATGAACCAATTA
1 ATTAACTATTTTGTTTTTGGTTACATGAACAAATTA
* *
126271368 ATTAACTCTTTT-TTCTTTTGTTACATGAACAAATTA
1 ATTAACTATTTTGTT-TTTGGTTACATGAACAAATTA
126271404 A
1 A
126271405 CCTTGATTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
35 2 0.06
36 31 0.94
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (36 bp):
ATTAACTATTTTGTTTTTGGTTACATGAACAAATTA
Found at i:126275496 original size:16 final size:17
Alignment explanation
Indices: 126275463--126275496 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
126275453 TTCATAAAGT
*
126275463 AAATTAATTTGATGATA
1 AAATTAATCTGATGATA
126275480 AAATTAATCTGAT-ATA
1 AAATTAATCTGATGATA
126275496 A
1 A
126275497 TGCCTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.50, C:0.03, G:0.09, T:0.38
Consensus pattern (17 bp):
AAATTAATCTGATGATA
Found at i:126275807 original size:14 final size:16
Alignment explanation
Indices: 126275771--126275807 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
126275761 AACTTTAAAA
*
126275771 AATTAAAAAATTGTTT
1 AATTTAAAAATTGTTT
126275787 AATTTAAAAATT-TTT
1 AATTTAAAAATTGTTT
126275802 -ATTTAA
1 AATTTAA
126275808 GTTATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 6 0.30
15 3 0.15
16 11 0.55
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
AATTTAAAAATTGTTT
Found at i:126290024 original size:31 final size:31
Alignment explanation
Indices: 126289989--126290047 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
126289979 CAACTCAATG
126289989 ACTTAAATAAAAACTTTCGAATAATTCAGTA
1 ACTTAAATAAAAACTTTCGAATAATTCAGTA
* * * *
126290020 ACTTAAATGAAAATTTTTGAATAGTTCA
1 ACTTAAATAAAAACTTTCGAATAATTCA
126290048 ACGATCATTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (31 bp):
ACTTAAATAAAAACTTTCGAATAATTCAGTA
Done.