Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 443 of 444
Found at i:128694135 original size:12 final size:12
Alignment explanation
Indices: 128694114--128694142 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
128694104 GATTTAATAT
128694114 TAAA-ATATTTA
1 TAAATATATTTA
128694125 TAAATATATTTA
1 TAAATATATTTA
128694137 TAAATA
1 TAAATA
128694143 AAATACTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
TAAATATATTTA
Found at i:128704538 original size:2 final size:2
Alignment explanation
Indices: 128704533--128704558 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
128704523 ACACGGATAA
128704533 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
128704559 GCAACCCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:128707554 original size:80 final size:80
Alignment explanation
Indices: 128707470--128707618 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
128707460 TATGGTAACC
* * * *
128707470 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
128707534 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
128707550 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
128707615 CCGG
66 CCGG
128707619 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:128707560 original size:40 final size:38
Alignment explanation
Indices: 128707511--128707618 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
128707501 ATCACGATTT
*
128707511 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
128707551 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
128707591 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
128707619 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:128714835 original size:80 final size:80
Alignment explanation
Indices: 128714751--128714899 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
128714741 TATGGTAACC
* * * *
128714751 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
128714815 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
128714831 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
128714896 CCGG
66 CCGG
128714900 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:128714841 original size:40 final size:38
Alignment explanation
Indices: 128714792--128714899 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
128714782 ATCACGATTT
*
128714792 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
128714832 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
128714872 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
128714900 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:128728354 original size:29 final size:29
Alignment explanation
Indices: 128728306--128728369 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
128728296 ATTTTAATTT
*
128728306 TTTAA-ATATTATAATCTAGAAATTTAAGA
1 TTTAATATATTATAATCTAGAAAGTTAA-A
128728335 TTTAATATATT-TAAAT-TAGAAAGTTAAA
1 TTTAATATATTAT-AATCTAGAAAGTTAAA
*
128728363 ATTAATA
1 TTTAATA
128728370 ATTCATTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 7 0.23
29 16 0.52
30 8 0.26
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.42
Consensus pattern (29 bp):
TTTAATATATTATAATCTAGAAAGTTAAA
Found at i:128728649 original size:16 final size:16
Alignment explanation
Indices: 128728625--128728674 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
128728615 AATTTCATTA
*
128728625 TTATTAATTTAAAATT
1 TTATAAATTTAAAATT
*
128728641 TTATAAATTATAAAATG
1 TTATAAATT-TAAAATT
*
128728658 CT-TAAA-TTAAAATT
1 TTATAAATTTAAAATT
128728672 TTA
1 TTA
128728675 CCATTTTAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
14 7 0.26
15 1 0.04
16 12 0.44
17 7 0.26
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (16 bp):
TTATAAATTTAAAATT
Found at i:128729595 original size:182 final size:181
Alignment explanation
Indices: 128729284--128730001 Score: 817
Period size: 182 Copynumber: 4.0 Consensus size: 181
128729274 ATTATGGATT
* * * * * *
128729284 AAGTATCACGTGTTGTAATCAGTCTTCGGTTAGTTTAGTTTCTTTTTAGGAAGCAATTTGAAATT
1 AAGTATCACATGTTGTAATCAGGCTTCAGTCAGTTTAGTTTCTTTTTA-GAAGCAAATTGCAA-T
* * * * *
128729349 C-ATCAAGAAGATGCAAATTGCAGCTAATATTAAGCTTGATGGAGTGTTAGAAATTGA-GTTAAA
64 CAATCAAGAAGCTGCGAATTGCAGCTAATATTAAGCTTAATGGAGTGTTA-AAAGTCAGGTTAAA
** * *
128729412 TTGACAAAAATAATCCGTTTATGTATATATTTGTCTTAGGAAAGGAGAAAGTTG
128 TTGATGAAAATAATCCATTTATGTATATATTTGTCTCAGGAAAGGAGAAAGTTG
* * *
128729466 ATGTATCACATGTTGTCATCAGGCTTCAGTCAGTTTAGTTTCTTTCTTAGAAGCAAATTGCAACC
1 AAGTATCACATGTTGTAATCAGGCTTCAGTCAGTTTAGTTTCTTT-TTAGAAGCAAATTGCAATC
* * *
128729531 AATCAAGAAGCTGTGAATTGCAGCTAATATTAAGCTCAATGGAGTGTTAAAAGTCAGATTAAATT
65 AATCAAGAAGCTGCGAATTGCAGCTAATATTAAGCTTAATGGAGTGTTAAAAGTCAGGTTAAATT
* * *
128729596 GATGAAAATAGTCCATTTATGT-TCATATTTGTCTCA-G-AA-GAG-GA-TTC
130 GATGAAAATAATCCATTTATGTAT-ATATTTGTCTCAGGAAAGGAGAAAGTTG
* * * * * * *
128729643 AAGTATCAAATGTTGTAACCAGGCTTCGGTCAGTTTAGTTTCTTTTCCAG-TGACCAATTGCTAT
1 AAGTATCACATGTTGTAATCAGGCTTCAGTCAGTTTAGTTTCTTTT-TAGAAG-CAAATTGCAAT
* * * *
128729707 TAATCAAGAAGCTGCGAATTGCAGCT-ATATTAAGCTTAATGGAGGGTTAAATGTCAGGTTAATT
64 CAATCAAGAAGCTGCGAATTGCAGCTAATATTAAGCTTAATGGAGTGTTAAAAGTCAGGTTAAAT
* * *
128729771 TGATGAAAATAGTCCATTCATGTATATATTTGTCTCAGAAAAGGAGAAAGTTG
129 TGATGAAAATAATCCATTTATGTATATATTTGTCTCAGGAAAGGAGAAAGTTG
* * * * *
128729824 AAGTATTACATGTTATAATCAGGCTTCAGTCAGTTAAGTTTCTTTTTTAGAAGCAAACTGCAATT
1 AAGTATCACATGTTGTAATCAGGCTTCAGTCAGTTTAGTTTC-TTTTTAGAAGCAAATTGCAATC
* * * *
128729889 AACCAAGAAGCTGTGAATTGCAGCTAATATTAAGCTTAATGGAGTGTTAAAAATCAGGTTAAGTT
65 AATCAAGAAGCTGCGAATTGCAGCTAATATTAAGCTTAATGGAGTGTTAAAAGTCAGGTTAAATT
* * * * * *
128729954 GATGAAAGTAATCTATTTATGTATTTGTTTGTGTCAGTAAAGGAGAAA
130 GATGAAAATAATCCATTTATGTATATATTTGTCTCAGGAAAGGAGAAA
128730002 AGTAATGGAA
Statistics
Matches: 451, Mismatches: 70, Indels: 30
0.82 0.13 0.05
Matches are distributed among these distances:
176 69 0.15
177 77 0.17
178 3 0.01
179 6 0.01
180 3 0.01
181 80 0.18
182 210 0.47
183 3 0.01
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.35
Consensus pattern (181 bp):
AAGTATCACATGTTGTAATCAGGCTTCAGTCAGTTTAGTTTCTTTTTAGAAGCAAATTGCAATCA
ATCAAGAAGCTGCGAATTGCAGCTAATATTAAGCTTAATGGAGTGTTAAAAGTCAGGTTAAATTG
ATGAAAATAATCCATTTATGTATATATTTGTCTCAGGAAAGGAGAAAGTTG
Found at i:128729958 original size:358 final size:357
Alignment explanation
Indices: 128729279--128729975 Score: 952
Period size: 358 Copynumber: 1.9 Consensus size: 357
128729269 AACGGATTAT
** * * * * *
128729279 GGATTAAGTATCACGTGTTGTAATCAGTCTTCGGTTAGTTTAGTTTCTTTTTAGGAAGCAATTTG
1 GGATTAAGTATCAAATGTTGTAACCAGGCTTCGGTCAGTTTAGTTTCTTTTCAGGAACCAATTTG
* * * *
128729344 AAATTCATCAAGAAGATGCAAATTGCAGCTAATATTAAGCTTGATGGAGTGTTAGAAATTGAGTT
66 AAATTAATCAAGAAGATGCAAATTGCAGCTAATATTAAGCTTAATGGAGGGTTA-AAATTCAGTT
* * * * *
128729409 AAATTGACAAAAATAATCCGTTTATGTATATATTTGTCTTAGGAAAGGAGAAAGTTGATGTATCA
130 AAATTGACAAAAATAATCCATTCATGTATATATTTGTCTCAGAAAAGGAGAAAGTTGAAGTATCA
* * * * *
128729474 CATGTTGTCATCAGGCTTCAGTCAGTTTAGTTTCTTTCTTAGAAGCAAATTGCAACCAATCAAGA
195 CATGTTATAATCAGGCTTCAGTCAGTTAAGTTTCTTTCTTAGAAGCAAACTGCAACCAACCAAGA
*
128729539 AGCTGTGAATTGCAGCTAATATTAAGCTCAATGGAGTGTTAAAAGTCAGATTAAATTGATGAAAA
260 AGCTGTGAATTGCAGCTAATATTAAGCTCAATGGAGTGTTAAAAATCAGATTAAATTGATGAAAA
*
128729604 TAGTCCATTTATGTTCATATTTGTCTCAGAAGA
325 TAATCCATTTATGTTCATATTTGTCTCAGAAGA
128729637 GGATTCAAGTATCAAATGTTGTAACCAGGCTTCGGTCAGTTTAGTTTCTTTTCCAGTG-ACCAA-
1 GGATT-AAGTATCAAATGTTGTAACCAGGCTTCGGTCAGTTTAGTTTCTTTT-CAG-GAACCAAT
** * *
128729700 TTGCTATTAATCAAGAAGCTGCGAATTGCAGCT-ATATTAAGCTTAATGGAGGGTT-AAATGTCA
63 TTGAAATTAATCAAGAAGATGCAAATTGCAGCTAATATTAAGCTTAATGGAGGGTTAAAAT-TCA
* ** *
128729763 GGTTAATTTGATGAAAATAGTCCATTCATGTATATATTTGTCTCAGAAAAGGAGAAAGTTGAAGT
127 -GTTAAATTGACAAAAATAATCCATTCATGTATATATTTGTCTCAGAAAAGGAGAAAGTTGAAGT
* * **
128729828 ATTACATGTTATAATCAGGCTTCAGTCAGTTAAGTTTCTTTTTTAGAAGCAAACTGCAATTAACC
191 ATCACATGTTATAATCAGGCTTCAGTCAGTTAAGTTTCTTTCTTAGAAGCAAACTGCAACCAACC
* * *
128729893 AAGAAGCTGTGAATTGCAGCTAATATTAAGCTTAATGGAGTGTTAAAAATCAGGTTAAGTTGATG
256 AAGAAGCTGTGAATTGCAGCTAATATTAAGCTCAATGGAGTGTTAAAAATCAGATTAAATTGATG
* *
128729958 AAAGTAATCTATTTATGT
321 AAAATAATCCATTTATGT
128729976 ATTTGTTTGT
Statistics
Matches: 294, Mismatches: 40, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
356 4 0.01
357 2 0.01
358 212 0.72
359 69 0.23
360 6 0.02
361 1 0.00
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (357 bp):
GGATTAAGTATCAAATGTTGTAACCAGGCTTCGGTCAGTTTAGTTTCTTTTCAGGAACCAATTTG
AAATTAATCAAGAAGATGCAAATTGCAGCTAATATTAAGCTTAATGGAGGGTTAAAATTCAGTTA
AATTGACAAAAATAATCCATTCATGTATATATTTGTCTCAGAAAAGGAGAAAGTTGAAGTATCAC
ATGTTATAATCAGGCTTCAGTCAGTTAAGTTTCTTTCTTAGAAGCAAACTGCAACCAACCAAGAA
GCTGTGAATTGCAGCTAATATTAAGCTCAATGGAGTGTTAAAAATCAGATTAAATTGATGAAAAT
AATCCATTTATGTTCATATTTGTCTCAGAAGA
Found at i:128739255 original size:147 final size:147
Alignment explanation
Indices: 128739055--128739447 Score: 428
Period size: 146 Copynumber: 2.7 Consensus size: 147
128739045 ATATATATAT
* * * * * *
128739055 ATATATATATGTATTCACACACATTTAATTGGTAAAAGTACCATAGCTGCCCTTAAACTAGGAGC
1 ATATATATATATA-T-ACACACCTCTAATTGGTAAAAGTACCATAGATGCCCTTAGACTAGGAGT
** * * * ** *
128739120 ATCATTGTATTTTGGCCAATCTACTAAAAAAATGTTTAAATTAACCATTGTATTTTGGATAAAAG
64 AAGATTGTATTTTGACCAATCTACTAAAAAAATGTTCAAATTAACCATTATACATTAGATAAAAG
*
128739185 GGCAATTAAAGGTGTGTGA
129 AGCAATTAAAGGTGTGTGA
* * * * *
128739204 GTATATATATATATATACACCTCTAATTGGTAAAAGTACCATAGATACCCTTAGAGTAGGAGTAG
1 ATATATATATATATACACACCTCTAATTGGTAAAAGTACCATAGATGCCCTTAGACTAGGAGTAA
** * * *** * *
128739269 GATTCCATTTTGACCGATCTA-TTAAAAAATGTTCAAATTAGTTATTATACATTATATCAAAGAG
66 GATTGTATTTTGACCAATCTACTAAAAAAATGTTCAAATTAACCATTATACATTAGATAAAAGAG
128739333 CAATTAAAGGTGTGTGA
131 CAATTAAAGGTGTGTGA
* * * *
128739350 ATATATATATATATACACACCTTTAATTAGTAAAAGTACCATGGATGCCCTTAGATTAGGAGTAA
1 ATATATATATATATACACACCTCTAATTGGTAAAAGTACCATAGATGCCCTTAGACTAGGAGTAA
* * *
128739415 GATTGTATTTTGCCCCATTTACTTAAAAAAATG
66 GATTGTATTTTGACCAATCTAC-TAAAAAAATG
128739448 GGCAGATTTG
Statistics
Matches: 200, Mismatches: 42, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
146 121 0.61
147 58 0.29
148 10 0.05
149 11 0.05
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (147 bp):
ATATATATATATATACACACCTCTAATTGGTAAAAGTACCATAGATGCCCTTAGACTAGGAGTAA
GATTGTATTTTGACCAATCTACTAAAAAAATGTTCAAATTAACCATTATACATTAGATAAAAGAG
CAATTAAAGGTGTGTGA
Found at i:128745980 original size:32 final size:33
Alignment explanation
Indices: 128745908--128745980 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
128745898 GGCTCTTAAC
* * *
128745908 TTTTTTTCTAAAAATTTTAATTAGGCTCCTCAA
1 TTTTTTTCGAAAAATTTCAATTAAGCTCCTCAA
128745941 TTCTTTTT-GAAAAA-TTCAATTAAGCTTCCTCAA
1 TT-TTTTTCGAAAAATTTCAATTAAGC-TCCTCAA
128745974 TTTTTTT
1 TTTTTTT
128745981 TTTTTGAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
32 14 0.40
33 16 0.46
34 5 0.14
ACGTcount: A:0.29, C:0.15, G:0.05, T:0.51
Consensus pattern (33 bp):
TTTTTTTCGAAAAATTTCAATTAAGCTCCTCAA
Found at i:128754729 original size:21 final size:21
Alignment explanation
Indices: 128754705--128754751 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
128754695 TGTATATCAA
128754705 ATAATTATTCTGCATGAATTG
1 ATAATTATTCTGCATGAATTG
128754726 ATAATTATTCTGCATGAATTG
1 ATAATTATTCTGCATGAATTG
*
128754747 GTAAT
1 ATAAT
128754752 GTATATATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.43
Consensus pattern (21 bp):
ATAATTATTCTGCATGAATTG
Found at i:128764629 original size:52 final size:48
Alignment explanation
Indices: 128764553--128764759 Score: 186
Period size: 47 Copynumber: 4.2 Consensus size: 48
128764543 CCATGGCAGC
* * * * *
128764553 ATGTGAAATGTGATTTCCGTATAAGACCATAACTGGGTTATGGCTTCGGAG
1 ATGTGATATGTG-CTTCCGTATAAGACCATATCTGGGATATGGCATC-G-G
* *
128764604 AAATGTGATATGTGCTTCCGTATAAGACTATATCCGGGATATGGCATCGG
1 --ATGTGATATGTGCTTCCGTATAAGACCATATCTGGGATATGGCATCGG
* * *
128764654 -TGTGATATGTGCTACTGTATAAGACCATATCTGGGATATGGCATCAG
1 ATGTGATATGTGCTTCCGTATAAGACCATATCTGGGATATGGCATCGG
* * * ** * *
128764701 -TGTGATATATG-ATCCGTGTAAGACCATGGCTGGGCTATGGCCTCGG
1 ATGTGATATGTGCTTCCGTATAAGACCATATCTGGGATATGGCATCGG
128764747 TATGTGATATGTG
1 -ATGTGATATGTG
128764760 ACTATGTGCA
Statistics
Matches: 129, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
46 26 0.20
47 52 0.40
48 10 0.08
50 1 0.01
51 1 0.01
52 28 0.22
53 11 0.09
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (48 bp):
ATGTGATATGTGCTTCCGTATAAGACCATATCTGGGATATGGCATCGG
Found at i:128769391 original size:5 final size:5
Alignment explanation
Indices: 128769381--128769408 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
128769371 AATAATTAAG
128769381 TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TAT
128769409 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:128770968 original size:24 final size:24
Alignment explanation
Indices: 128770936--128771003 Score: 111
Period size: 24 Copynumber: 2.9 Consensus size: 24
128770926 AGGATTTACA
128770936 ATATTCCGGGTGTGTTTGGGTTGG
1 ATATTCCGGGTGTGTTTGGGTTGG
*
128770960 ATATTCCGGGTGTGTTTAGGTTGG
1 ATATTCCGGGTGTGTTTGGGTTGG
*
128770984 ATATT-CTGGTGTGTTTGGGT
1 ATATTCCGGGTGTGTTTGGGT
128771004 GGAAATCCGC
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
23 13 0.32
24 28 0.68
ACGTcount: A:0.10, C:0.07, G:0.38, T:0.44
Consensus pattern (24 bp):
ATATTCCGGGTGTGTTTGGGTTGG
Found at i:128771847 original size:3 final size:3
Alignment explanation
Indices: 128771839--128771872 Score: 50
Period size: 3 Copynumber: 10.7 Consensus size: 3
128771829 GTTCCTATTC
128771839 TCT TCT TCT TCT TCT TCT TCT TCT CTCT CTCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT -TCT -TCT TC
128771873 ACTCAATCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 23 0.77
4 7 0.23
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:128773573 original size:6 final size:6
Alignment explanation
Indices: 128773564--128773590 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
128773554 GCCAACGACT
128773564 GAGTCC GAGTCC GAGTCC GAGTCC GAG
1 GAGTCC GAGTCC GAGTCC GAGTCC GAG
128773591 CTTGAGACTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.30, G:0.37, T:0.15
Consensus pattern (6 bp):
GAGTCC
Found at i:128780091 original size:29 final size:29
Alignment explanation
Indices: 128780056--128780126 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 29
128780046 TTTAAATTAG
128780056 TAAAAATAAAATTACACTTTAA-TT-AT-TTT
1 TAAAAATAAAA-TA-A-TTTAATTTAATCTTT
128780085 TAAAAATAATAATAATTTAATTTAATCTTT
1 TAAAAATAA-AATAATTTAATTTAATCTTT
128780115 TAAAAATTAAAA
1 TAAAAA-TAAAA
128780127 AATATAAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
27 5 0.14
28 3 0.08
29 13 0.35
30 13 0.35
31 3 0.08
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (29 bp):
TAAAAATAAAATAATTTAATTTAATCTTT
Found at i:128786925 original size:17 final size:15
Alignment explanation
Indices: 128786899--128786938 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 15
128786889 TTTAACTTCG
128786899 AAAA-TTTTAATTAA
1 AAAATTTTTAATTAA
128786913 TTAAAATTTTTAATTAA
1 --AAAATTTTTAATTAA
128786930 AAAATTTTT
1 AAAATTTTT
128786939 TTCATCCCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.39
16 4 0.17
17 10 0.43
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AAAATTTTTAATTAA
Found at i:128791221 original size:3 final size:3
Alignment explanation
Indices: 128791213--128791245 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
128791203 CTTCCCTTCG
128791213 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
128791246 TTTTTTCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:128793197 original size:243 final size:243
Alignment explanation
Indices: 128792769--128793255 Score: 884
Period size: 243 Copynumber: 2.0 Consensus size: 243
128792759 CAAGTGTTGT
*
128792769 TGATTTGACAGCTTCTGTTACTGATCCCCTCCCTAAAGCCTTAGAAGTTGCTGAGAGATTAGTAT
1 TGATTTGACAGCTACTGTTACTGATCCCCTCCCTAAAGCCTTAGAAGTTGCTGAGAGATTAGTAT
*
128792834 CTTTCATGGAAGCAGCTAAAAGTTTAAGTGCAGAAGGTGCTGAAGGGGATGTAAGGAAGGAAAAG
66 CTTTCATGGAAGCAGCTAAAAGTTTAAGTACAGAAGGTGCTGAAGGGGATGTAAGGAAGGAAAAG
*
128792899 GGTGTTCCTGCAGCACCTATGAATTGTAATTTTGAACGGGCTCAAGCTGAGAGGAGGGAACCTGA
131 GGTGTTCCTGCAGCACCTATGAATTGTAATTTTGAACAGGCTCAAGCTGAGAGGAGGGAACCTGA
128792964 CAAGGCCATCAGAGAAGACCAGGACAAGATGAACAGGAGTGTTCCTGC
196 CAAGGCCATCAGAGAAGACCAGGACAAGATGAACAGGAGTGTTCCTGC
* *
128793012 TGATTTGACAGCTACTGTTGCTGATTCCCTCCCTAAAGCCTTAGAAGTTGCTGAGAGATTAGTAT
1 TGATTTGACAGCTACTGTTACTGATCCCCTCCCTAAAGCCTTAGAAGTTGCTGAGAGATTAGTAT
* *
128793077 CTTTCATGGCAGCAGCTAAAAGTTTAAGTACTGAAGGTGCTGAAGGGGATGTAAGGAAGGAAAAG
66 CTTTCATGGAAGCAGCTAAAAGTTTAAGTACAGAAGGTGCTGAAGGGGATGTAAGGAAGGAAAAG
*
128793142 GGTGTTCCTGCAGCACCTATGAATTGTAATTTTGAACAGGCTCAAGCTGAGAGGAGGGCACCTGA
131 GGTGTTCCTGCAGCACCTATGAATTGTAATTTTGAACAGGCTCAAGCTGAGAGGAGGGAACCTGA
**
128793207 CAAGGCCATCAGAGAAGACCAGGACAAGATGGGCAGGAGTGTTCCTGC
196 CAAGGCCATCAGAGAAGACCAGGACAAGATGAACAGGAGTGTTCCTGC
128793255 T
1 T
128793256 TCGTCTGTTG
Statistics
Matches: 234, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
243 234 1.00
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24
Consensus pattern (243 bp):
TGATTTGACAGCTACTGTTACTGATCCCCTCCCTAAAGCCTTAGAAGTTGCTGAGAGATTAGTAT
CTTTCATGGAAGCAGCTAAAAGTTTAAGTACAGAAGGTGCTGAAGGGGATGTAAGGAAGGAAAAG
GGTGTTCCTGCAGCACCTATGAATTGTAATTTTGAACAGGCTCAAGCTGAGAGGAGGGAACCTGA
CAAGGCCATCAGAGAAGACCAGGACAAGATGAACAGGAGTGTTCCTGC
Found at i:128800376 original size:12 final size:12
Alignment explanation
Indices: 128800337--128800393 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 12
128800327 TTTAGTACAA
128800337 ATTTATTAAAATT
1 ATTTATTAAAA-T
*
128800350 ATTAATTAAAAAAT
1 ATTTATT--AAAAT
*
128800364 ATTTTTTAAAAT
1 ATTTATTAAAAT
*
128800376 ATTAATTATAAAT
1 ATTTATTA-AAAT
128800389 ATTTA
1 ATTTA
128800394 ATGATTATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
12 11 0.31
13 14 0.40
14 6 0.17
15 4 0.11
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
ATTTATTAAAAT
Found at i:128800387 original size:14 final size:14
Alignment explanation
Indices: 128800343--128800391 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 14
128800333 ACAAATTTAT
128800343 TAAAATTATTAATTA
1 TAAAA-TATTAATTA
* *
128800358 AAAAATATT--TTT
1 TAAAATATTAATTA
128800370 TAAAATATTAATTA
1 TAAAATATTAATTA
128800384 T-AAATATT
1 TAAAATATT
128800392 TAATGATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
12 10 0.36
13 7 0.25
14 7 0.25
15 4 0.14
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
TAAAATATTAATTA
Found at i:128800408 original size:21 final size:21
Alignment explanation
Indices: 128800376--128800415 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
128800366 TTTTTAAAAT
128800376 ATTAATTATAAATATTTAATG
1 ATTAATTATAAATATTTAATG
128800397 ATTATATT-TAAATATTTAA
1 ATTA-ATTATAAATATTTAA
128800416 AATATAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (21 bp):
ATTAATTATAAATATTTAATG
Found at i:128800463 original size:24 final size:24
Alignment explanation
Indices: 128800436--128800496 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
128800426 ATATATTCTC
*
128800436 TTTAAATTTTATAAATAATTAATA
1 TTTAAATTTTATAAATAATTAAAA
* * *
128800460 TTT-ATTGTTTAAAAATATTTAAAA
1 TTTAAAT-TTTATAAATAATTAAAA
*
128800484 TTTATATTTTATA
1 TTTAAATTTTATA
128800497 TATTAAAAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
23 2 0.07
24 25 0.89
25 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
TTTAAATTTTATAAATAATTAAAA
Found at i:128803377 original size:18 final size:18
Alignment explanation
Indices: 128803354--128803419 Score: 123
Period size: 18 Copynumber: 3.7 Consensus size: 18
128803344 CAGGTTCCGC
128803354 GGGTTTTTCCGGTGCTTT
1 GGGTTTTTCCGGTGCTTT
128803372 GGGTTTTTCCGGTGCTTT
1 GGGTTTTTCCGGTGCTTT
*
128803390 GGGTTTTTCCGGTTCTTT
1 GGGTTTTTCCGGTGCTTT
128803408 GGGTTTTTCCGG
1 GGGTTTTTCCGG
128803420 CTTCTTCTCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.00, C:0.17, G:0.33, T:0.50
Consensus pattern (18 bp):
GGGTTTTTCCGGTGCTTT
Found at i:128803435 original size:11 final size:11
Alignment explanation
Indices: 128803417--128803475 Score: 54
Period size: 10 Copynumber: 5.7 Consensus size: 11
128803407 TGGGTTTTTC
128803417 CGGCTTCTTCT
1 CGGCTTCTTCT
*
128803428 CAGCTTCTT-T
1 CGGCTTCTTCT
* *
128803438 -GGGTTTTTC-
1 CGGCTTCTTCT
128803447 CGGCTTCTTCT
1 CGGCTTCTTCT
*
128803458 CAGCTTCTT-T
1 CGGCTTCTTCT
128803468 CGGCTTCT
1 CGGCTTCT
128803476 CGGCTTCTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 7
0.71 0.15 0.13
Matches are distributed among these distances:
9 5 0.14
10 16 0.43
11 16 0.43
ACGTcount: A:0.03, C:0.31, G:0.19, T:0.47
Consensus pattern (11 bp):
CGGCTTCTTCT
Found at i:128803438 original size:30 final size:30
Alignment explanation
Indices: 128803402--128803484 Score: 132
Period size: 30 Copynumber: 2.8 Consensus size: 30
128803392 GTTTTTCCGG
128803402 TTCTTTGGGTTTTTCCGGCTTCTTCTCAGC
1 TTCTTTGGGTTTTTCCGGCTTCTTCTCAGC
128803432 TTCTTTGGGTTTTTCCGGCTTCTTCTCAGC
1 TTCTTTGGGTTTTTCCGGCTTCTTCTCAGC
* * *
128803462 TTCTTTCGGCTTCT-CGGCTTCTT
1 TTCTTTGGGTTTTTCCGGCTTCTT
128803485 TAGGTTTGTC
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 9 0.18
30 41 0.82
ACGTcount: A:0.02, C:0.28, G:0.19, T:0.51
Consensus pattern (30 bp):
TTCTTTGGGTTTTTCCGGCTTCTTCTCAGC
Found at i:128803496 original size:18 final size:18
Alignment explanation
Indices: 128803453--128803488 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
128803443 TTTCCGGCTT
* *
128803453 CTTCTCAGCTTCTTTCGG
1 CTTCTCGGCTTCTTTAGG
128803471 CTTCTCGGCTTCTTTAGG
1 CTTCTCGGCTTCTTTAGG
128803489 TTTGTCGGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.31, G:0.19, T:0.44
Consensus pattern (18 bp):
CTTCTCGGCTTCTTTAGG
Found at i:128805279 original size:4 final size:4
Alignment explanation
Indices: 128805270--128805299 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
128805260 TATTAAATCA
*
128805270 AAAT AAAT AAAT AACT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
128805300 GACACAAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:128810143 original size:30 final size:31
Alignment explanation
Indices: 128810089--128810146 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
128810079 AAAAATTATT
*
128810089 TACAATTAAATCAAGATCAAAATTTCATGTG
1 TACAATTAAACCAAGATCAAAATTTCATGTG
*
128810120 TACAATTAAACCAA-ATTAAAATTTCAT
1 TACAATTAAACCAAGATCAAAATTTCAT
128810147 ATATATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.48, C:0.14, G:0.05, T:0.33
Consensus pattern (31 bp):
TACAATTAAACCAAGATCAAAATTTCATGTG
Found at i:128810157 original size:30 final size:31
Alignment explanation
Indices: 128810089--128810157 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 31
128810079 AAAAATTATT
* * *
128810089 TACAATTAAATCAAGATCAAAATTTCATGTG
1 TACAATTAAACCAAGATCAAAATTTCATATA
*
128810120 TACAATTAAACCAA-ATTAAAATTTCATATA
1 TACAATTAAACCAAGATCAAAATTTCATATA
*
128810150 TATAATTA
1 TACAATTA
128810158 CAGTAAATCA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
30 20 0.61
31 13 0.39
ACGTcount: A:0.49, C:0.12, G:0.04, T:0.35
Consensus pattern (31 bp):
TACAATTAAACCAAGATCAAAATTTCATATA
Found at i:128811510 original size:4 final size:4
Alignment explanation
Indices: 128811503--128811548 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
128811493 TGATACATGC
128811503 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
128811549 TGATGGAACG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:128833871 original size:29 final size:31
Alignment explanation
Indices: 128833817--128833896 Score: 94
Period size: 29 Copynumber: 2.7 Consensus size: 31
128833807 TTTGACCCCC
* *
128833817 TAAAAATAATAAAAAAATTTATTTAATTTTT
1 TAAAAATAATAAAAAAATATATTTAATATTT
*
128833848 TAAAACTAAT-AAAAAATAT-TTTAATATTT
1 TAAAAATAATAAAAAAATATATTTAATATTT
* *
128833877 TAAAAA-ATTATAAAAATATA
1 TAAAAATAATAAAAAAATATA
128833897 GGTTATTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
28 2 0.05
29 22 0.54
30 8 0.20
31 9 0.22
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (31 bp):
TAAAAATAATAAAAAAATATATTTAATATTT
Found at i:128833890 original size:30 final size:30
Alignment explanation
Indices: 128833818--128833896 Score: 90
Period size: 30 Copynumber: 2.6 Consensus size: 30
128833808 TTGACCCCCT
* *
128833818 AAAAATAATAAAAAAATTTATTTAATTTTTT
1 AAAAATAAT-AAAAAATATATTTAATTTTTA
*
128833849 AAAACTAATAAAAAATAT-TTTAATATTTTA
1 AAAAATAATAAAAAATATATTTAAT-TTTTA
*
128833879 AAAAATTAT-AAAAATATA
1 AAAAATAATAAAAAATATA
128833897 GGTTATTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 14 0.34
30 19 0.46
31 8 0.20
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (30 bp):
AAAAATAATAAAAAATATATTTAATTTTTA
Found at i:128834120 original size:49 final size:49
Alignment explanation
Indices: 128834060--128834158 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
128834050 TATAAATTAA
*
128834060 AATCTAAATAACTTTTTCTCCTTTGAAACTTGTGAATTAAATTTAAAAG
1 AATCTAAATAACTTTTTCTCCTTTAAAACTTGTGAATTAAATTTAAAAG
128834109 AATCTAAATAACTTTTTCTCCTTTAAAACTTGTGAATTAAATTTAAAAG
1 AATCTAAATAACTTTTTCTCCTTTAAAACTTGTGAATTAAATTTAAAAG
128834158 A
1 A
128834159 GAATTTTAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.40
Consensus pattern (49 bp):
AATCTAAATAACTTTTTCTCCTTTAAAACTTGTGAATTAAATTTAAAAG
Found at i:128842684 original size:12 final size:12
Alignment explanation
Indices: 128842667--128842692 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
128842657 GAGAAGCATA
128842667 TTTTACAATATT
1 TTTTACAATATT
128842679 TTTTACAATATT
1 TTTTACAATATT
128842691 TT
1 TT
128842693 CATAATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTTACAATATT
Found at i:128843660 original size:84 final size:81
Alignment explanation
Indices: 128843572--128843917 Score: 355
Period size: 84 Copynumber: 4.2 Consensus size: 81
128843562 AGAGAAAAAG
* ***
128843572 AAGGCAGTTGAAGAAAGAAAACTTG-TCGATTTGGAGATGGCTAAAGCAAGCGAGTTGAGGAAGA
1 AAGGCTGTTGAAGAAAGAAAAC-TGCT-GATTTGGAGATGGCTAAAGC-AG-GAGCAAAGGAAGA
*
128843636 GTGCAGAAGAAACTAAGAAA
62 TTGCAGAAGAAACTAAGAAA
* * *
128843656 AAGGCTGTTGATGAAAGAAAATGTGCTGATTTGGAGATGGCTAAAGCAGAGAAGCAGAGGAAGAT
1 AAGGCTGTTGAAGAAAGAAAA-CTGCTGATTTGGAGATGGCTAAAGCAG-G-AGCAAAGGAAGAT
*
128843721 TGCTA-AAGAAACTAAGAAG
63 TGC-AGAAGAAACTAAGAAA
* *
128843740 AAGGCTGTTGAAGAAAGAAAACGTGCTGATTTAGAGATGGCTGAAGCAGTGAAGCAAAGGAAGAT
1 AAGGCTGTTGAAGAAAGAAAAC-TGCTGATTTGGAGATGGCTAAAGCAG-G-AGCAAAGGAAGAT
*
128843805 TGCAGAAGAAAAC-ATGAAA
63 TGCAGAAG-AAACTAAGAAA
* * *
128843824 AAGGCGGTTGAAGGAAGAAAACAAGCTGATATT-GAGATGGCTAAAGCAGAAGAGCAAAGGAAGA
1 AAGGCTGTTGAAGAAAGAAAAC-TGCTGAT-TTGGAGATGGCTAAAGCAG--GAGCAAAGGAAGA
*
128843888 TTGCAGAAGAAAATAAG---
62 TTGCAGAAGAAACTAAGAAA
128843905 AAGGCTGTTGAAG
1 AAGGCTGTTGAAG
128843918 GGCCCAAAGT
Statistics
Matches: 227, Mismatches: 25, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
81 12 0.05
83 7 0.03
84 199 0.88
85 9 0.04
ACGTcount: A:0.43, C:0.09, G:0.31, T:0.17
Consensus pattern (81 bp):
AAGGCTGTTGAAGAAAGAAAACTGCTGATTTGGAGATGGCTAAAGCAGGAGCAAAGGAAGATTGC
AGAAGAAACTAAGAAA
Found at i:128843863 original size:168 final size:168
Alignment explanation
Indices: 128843569--128843907 Score: 420
Period size: 168 Copynumber: 2.0 Consensus size: 168
128843559 AGAAGAGAAA
* * ***
128843569 AAGAAGGCAGTTGAAGAAAGAAAACTTGTCGATTTGGAGATGGCTAAAGCAAGCGAGTTGAGGAA
1 AAGAAGGCAGTTGAAGAAAGAAAACGTGTCGATTTAGAGATGGCTAAAGCAAGCGAGCAAAGGAA
* * ***
128843634 GAGTGCAGAAGAAACTAAGAAAAAGGCTGTTGATGAAAGAAAATGTGCTGATTTGGAGATGGCTA
66 GAGTGCAGAAGAAACTAAGAAAAAGGCGGTTGAAGAAAGAAAACAAGCTGATTTGGAGATGGCTA
* *
128843699 AAGCAG-AGAAGCAGAGGAAGATTGCTA-AAGAAACTAAG
131 AAGCAGAAG-AGCAAAGGAAGATTGC-AGAAGAAAATAAG
* * *
128843737 AAGAAGGCTGTTGAAGAAAGAAAACGTG-CTGATTTAGAGATGGCTGAAGC-AGTGAAGCAAAGG
1 AAGAAGGCAGTTGAAGAAAGAAAACGTGTC-GATTTAGAGATGGCTAAAGCAAGCG-AGCAAAGG
* * *
128843800 AAGATTGCAGAAGAAAAC-ATGAAAAAGGCGGTTGAAGGAAGAAAACAAGCTGATATT-GAGATG
64 AAGAGTGCAGAAG-AAACTAAGAAAAAGGCGGTTGAAGAAAGAAAACAAGCTGAT-TTGGAGATG
128843863 GCTAAAGCAGAAGAGCAAAGGAAGATTGCAGAAGAAAATAAG
127 GCTAAAGCAGAAGAGCAAAGGAAGATTGCAGAAGAAAATAAG
128843905 AAG
1 AAG
128843908 GCTGTTGAAG
Statistics
Matches: 147, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
167 5 0.03
168 134 0.91
169 8 0.05
ACGTcount: A:0.44, C:0.09, G:0.31, T:0.16
Consensus pattern (168 bp):
AAGAAGGCAGTTGAAGAAAGAAAACGTGTCGATTTAGAGATGGCTAAAGCAAGCGAGCAAAGGAA
GAGTGCAGAAGAAACTAAGAAAAAGGCGGTTGAAGAAAGAAAACAAGCTGATTTGGAGATGGCTA
AAGCAGAAGAGCAAAGGAAGATTGCAGAAGAAAATAAG
Found at i:128845097 original size:4 final size:4
Alignment explanation
Indices: 128845090--128845115 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
128845080 GAGAGAGAGA
128845090 GAGG GAGG GAGG GAGG GAGG GAGG GA
1 GAGG GAGG GAGG GAGG GAGG GAGG GA
128845116 TTTCATCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.73, T:0.00
Consensus pattern (4 bp):
GAGG
Found at i:128851957 original size:13 final size:14
Alignment explanation
Indices: 128851933--128851966 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
128851923 TCAGCGGAGT
128851933 ATCTTCTTCCATAA
1 ATCTTCTTCCATAA
128851947 ATCTT-TTCCATAA
1 ATCTTCTTCCATAA
*
128851960 ACCTTCT
1 ATCTTCT
128851967 AATGCTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.44
Consensus pattern (14 bp):
ATCTTCTTCCATAA
Found at i:128856717 original size:15 final size:15
Alignment explanation
Indices: 128856686--128856730 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
128856676 AAGTTGAGTA
*
128856686 TTTAAATAGTAAGTT
1 TTTAAATAGTAAATT
*
128856701 TTTAAATATTAAA-T
1 TTTAAATAGTAAATT
128856715 TTT-AAT-GTAAATT
1 TTTAAATAGTAAATT
128856728 TTT
1 TTT
128856731 TATTTTCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 4 0.15
13 7 0.27
14 4 0.15
15 11 0.42
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (15 bp):
TTTAAATAGTAAATT
Found at i:128856750 original size:20 final size:20
Alignment explanation
Indices: 128856725--128856768 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
128856715 TTTAATGTAA
*
128856725 ATTTTT-TATTTTCATAATTT
1 ATTTTTATATATTCA-AATTT
128856745 ATTTTTATATATTCAAATTT
1 ATTTTTATATATTCAAATTT
128856765 -TTTT
1 ATTTT
128856769 ATAATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 4 0.18
20 11 0.50
21 7 0.32
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (20 bp):
ATTTTTATATATTCAAATTT
Found at i:128856759 original size:21 final size:21
Alignment explanation
Indices: 128856725--128856780 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 21
128856715 TTTAATGTAA
*
128856725 ATTTTT-TATTTTCATAATTT
1 ATTTTTATATATTCATAATTT
128856745 ATTTTTATATATTCA-AA-TT
1 ATTTTTATATATTCATAATTT
*
128856764 -TTTTTATA-ATTTATAAT
1 ATTTTTATATATTCATAAT
128856781 ATCTCTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
17 4 0.13
18 10 0.32
19 2 0.06
20 8 0.26
21 7 0.23
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTTTTATATATTCATAATTT
Found at i:128856768 original size:19 final size:18
Alignment explanation
Indices: 128856726--128856768 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
128856716 TTAATGTAAA
128856726 TTTTTTATTTTCATAATT
1 TTTTTTATTTTCATAATT
128856744 TATTTTTATATATTCA-AATT
1 T-TTTTTAT-T-TTCATAATT
128856764 TTTTT
1 TTTTT
128856769 ATAATTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 1 0.05
19 11 0.50
20 6 0.27
21 4 0.18
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTTTATTTTCATAATT
Found at i:128859758 original size:17 final size:19
Alignment explanation
Indices: 128859725--128859759 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
128859715 AATTCTAATA
128859725 AATTAATATTGCTCAATTG
1 AATTAATATTGCTCAATTG
128859744 AATTAAT-TT-CTCAATT
1 AATTAATATTGCTCAATT
128859760 TTCGTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 2 0.12
19 7 0.44
ACGTcount: A:0.37, C:0.11, G:0.06, T:0.46
Consensus pattern (19 bp):
AATTAATATTGCTCAATTG
Found at i:128870312 original size:29 final size:28
Alignment explanation
Indices: 128870280--128870371 Score: 80
Period size: 29 Copynumber: 3.1 Consensus size: 28
128870270 GCGACACCTA
128870280 AAATTATTGT-TCTTTCATATTATTTTAAT
1 AAATTATT-TATCTTT-ATATTATTTTAAT
* * *
128870309 AAATAATTTATAAC-TTATATTATTTAAAA
1 AAATTATTTAT--CTTTATATTATTTTAAT
128870338 AAATTAATTTTATCTTTTATATTATTTTAAT
1 AAATT-A-TTTATC-TTTATATTATTTTAAT
128870369 AAA
1 AAA
128870372 ATCTCAAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
28 1 0.02
29 24 0.48
30 3 0.06
31 22 0.44
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.53
Consensus pattern (28 bp):
AAATTATTTATCTTTATATTATTTTAAT
Found at i:128870358 original size:31 final size:32
Alignment explanation
Indices: 128870290--128870373 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 32
128870280 AAATTATTGT
* * *
128870290 TCTTTCATATTATTTTAATAAA-TAATTTATA
1 TCTTTTATATTATTTAAAAAAATTAATTTATA
*
128870321 AC--TTATATTATTTAAAAAAATTAATTT-TA
1 TCTTTTATATTATTTAAAAAAATTAATTTATA
*
128870350 TCTTTTATATTATTTTAATAAAAT
1 TCTTTTATATTA-TTTAAAAAAAT
128870374 CTCAAAAACT
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
29 18 0.42
30 6 0.14
31 9 0.21
32 10 0.23
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.54
Consensus pattern (32 bp):
TCTTTTATATTATTTAAAAAAATTAATTTATA
Found at i:128872416 original size:12 final size:12
Alignment explanation
Indices: 128872395--128872471 Score: 82
Period size: 12 Copynumber: 6.2 Consensus size: 12
128872385 GAGATAGGAA
*
128872395 GGATAAGGATAG
1 GGATAGGGATAG
128872407 GGATAGGGATAAGAG
1 GGATAGGGAT---AG
* *
128872422 GGACAGAGATAG
1 GGATAGGGATAG
*
128872434 AGATAGGGATAG
1 GGATAGGGATAG
128872446 GGATAGGGATAG
1 GGATAGGGATAG
*
128872458 GGATAGAGATAG
1 GGATAGGGATAG
128872470 GG
1 GG
128872472 GCAGAGATAG
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
12 44 0.81
15 10 0.19
ACGTcount: A:0.39, C:0.01, G:0.45, T:0.14
Consensus pattern (12 bp):
GGATAGGGATAG
Found at i:128872435 original size:6 final size:6
Alignment explanation
Indices: 128872426--128872500 Score: 55
Period size: 6 Copynumber: 12.5 Consensus size: 6
128872416 TAAGAGGGAC
* * * * * **
128872426 AGAGAT AGAGAT AGGGAT AGGGAT AGGGAT AGGGAT AGAGAT AGGGGC
1 AGAGAT AGAGAT AGAGAT AGAGAT AGAGAT AGAGAT AGAGAT AGAGAT
128872474 AGAGAT AG-GAGT AG-GCAT AGAGAT AGA
1 AGAGAT AGAGA-T AGAG-AT AGAGAT AGA
128872501 TATAAGGAGG
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
5 2 0.03
6 54 0.93
7 2 0.03
ACGTcount: A:0.40, C:0.03, G:0.43, T:0.15
Consensus pattern (6 bp):
AGAGAT
Found at i:128872469 original size:18 final size:18
Alignment explanation
Indices: 128872395--128872471 Score: 82
Period size: 18 Copynumber: 4.1 Consensus size: 18
128872385 GAGATAGGAA
* *
128872395 GGATAAGGATAGGGATAG
1 GGATAGGGATAGAGATAG
*
128872413 GGATAAGAGGGACAGAGATAG
1 GGAT---AGGGATAGAGATAG
* *
128872434 AGATAGGGATAGGGATAG
1 GGATAGGGATAGAGATAG
128872452 GGATAGGGATAGAGATAG
1 GGATAGGGATAGAGATAG
128872470 GG
1 GG
128872472 GCAGAGATAG
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
18 34 0.71
21 14 0.29
ACGTcount: A:0.39, C:0.01, G:0.45, T:0.14
Consensus pattern (18 bp):
GGATAGGGATAGAGATAG
Found at i:128876682 original size:3 final size:3
Alignment explanation
Indices: 128876674--128876700 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
128876664 CAAAATAGAA
128876674 ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC
128876701 TCGAGAAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:128879618 original size:15 final size:15
Alignment explanation
Indices: 128879598--128879627 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
128879588 TGAGATTAAA
128879598 ATATAAATTTTTTAT
1 ATATAAATTTTTTAT
128879613 ATATAAATTTTTTAT
1 ATATAAATTTTTTAT
128879628 TTTGGGAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATATAAATTTTTTAT
Found at i:128880291 original size:3 final size:3
Alignment explanation
Indices: 128880283--128880333 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
128880273 ACATGCATGG
128880283 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
128880331 ATA
1 ATA
128880334 TGGTTGTCTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:128889760 original size:23 final size:22
Alignment explanation
Indices: 128889730--128889778 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 22
128889720 AATTGCAAAC
* *
128889730 TTTACGATAGTAAAAATGTAACT
1 TTTACGATAATAAAAATATAA-T
128889753 TTTACGATAATAAAAATATAAT
1 TTTACGATAATAAAAATATAAT
128889775 TTTA
1 TTTA
128889779 TCTTTTTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (22 bp):
TTTACGATAATAAAAATATAAT
Found at i:128891727 original size:6 final size:6
Alignment explanation
Indices: 128891694--128891721 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
128891684 AAGAGAATGG
128891694 AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA
128891722 AGAAAAGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:128897665 original size:14 final size:15
Alignment explanation
Indices: 128897648--128897682 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
128897638 GGAAACTAAA
128897648 ATTTTTA-AATATCC
1 ATTTTTACAATATCC
*
128897662 ATTTTTACAATATTC
1 ATTTTTACAATATCC
128897677 ATTTTT
1 ATTTTT
128897683 CTTAAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTTTTACAATATCC
Found at i:128901260 original size:24 final size:24
Alignment explanation
Indices: 128901214--128901261 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
128901204 GAGTATATTA
*
128901214 TATTTGATATTTATTTAATTTTAT
1 TATTTGATATTTATTAAATTTTAT
128901238 TATTTGATATTTA-TAAATATTTAT
1 TATTTGATATTTATTAAAT-TTTAT
128901262 ATATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (24 bp):
TATTTGATATTTATTAAATTTTAT
Found at i:128901514 original size:30 final size:32
Alignment explanation
Indices: 128901452--128901523 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 32
128901442 AAAATTATAC
128901452 ATGAATTTTAGTTTAATGTGCTATTGTATACAT
1 ATGAATTTTAGTTT-ATGTGCTATTGTATACAT
*
128901485 ATGAATTTTA-TTT-TGTG-TAATTTTATACAT
1 ATGAATTTTAGTTTATGTGCT-ATTGTATACAT
*
128901515 -TAAATTTTA
1 ATGAATTTTA
128901524 ATTAATAGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
29 9 0.25
30 14 0.39
32 3 0.08
33 10 0.28
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.53
Consensus pattern (32 bp):
ATGAATTTTAGTTTATGTGCTATTGTATACAT
Found at i:128906777 original size:70 final size:70
Alignment explanation
Indices: 128906683--128906819 Score: 274
Period size: 70 Copynumber: 2.0 Consensus size: 70
128906673 ATTTGAAAGT
128906683 TTTCATTTAAGTAGTTGAAATATTCAAAAGTTTTTAGTTAAGTCATTAGACTACTACGGTGTTCT
1 TTTCATTTAAGTAGTTGAAATATTCAAAAGTTTTTAGTTAAGTCATTAGACTACTACGGTGTTCT
128906748 TTAAA
66 TTAAA
128906753 TTTCATTTAAGTAGTTGAAATATTCAAAAGTTTTTAGTTAAGTCATTAGACTACTACGGTGTTCT
1 TTTCATTTAAGTAGTTGAAATATTCAAAAGTTTTTAGTTAAGTCATTAGACTACTACGGTGTTCT
128906818 TT
66 TT
128906820 CTTTAAAAAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (70 bp):
TTTCATTTAAGTAGTTGAAATATTCAAAAGTTTTTAGTTAAGTCATTAGACTACTACGGTGTTCT
TTAAA
Found at i:128926786 original size:21 final size:22
Alignment explanation
Indices: 128926760--128926800 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
128926750 TCAAAATTAA
*
128926760 AAAAAAATAT-ATTTAATTTTT
1 AAAAAAATATAATTCAATTTTT
*
128926781 AAAAAATTATAATTCAATTT
1 AAAAAAATATAATTCAATTT
128926801 CAAGAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
AAAAAAATATAATTCAATTTTT
Found at i:128930828 original size:2 final size:2
Alignment explanation
Indices: 128930821--128930858 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
128930811 TGCAAACTGC
*
128930821 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
128930859 GTTTGAGTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:128936281 original size:43 final size:42
Alignment explanation
Indices: 128936234--128936318 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 42
128936224 GACTTAAAAA
*
128936234 AATTAATAATGAAATAAAAATATGTGTAGGGGATTTAATTATT
1 AATTAATAATGAAATAAAAATATATGTAGGGG-TTTAATTATT
*
128936277 AATTAATAATGAAATAAAAATGTATGTAGGGGTTTAATTATT
1 AATTAATAATGAAATAAAAATATATGTAGGGGTTTAATTATT
128936319 TGATTTTAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 10 0.25
43 30 0.75
ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38
Consensus pattern (42 bp):
AATTAATAATGAAATAAAAATATATGTAGGGGTTTAATTATT
Found at i:128937102 original size:31 final size:31
Alignment explanation
Indices: 128937038--128937111 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
128937028 ATCTTTTACG
* *
128937038 AAGAGTCCATTTTGACCATCAACATTTTAAA
1 AAGAGTCAATTTTAACCATCAACATTTTAAA
* * *
128937069 AAGAGTCAATTTTAACCATCGACCTTTTTAA
1 AAGAGTCAATTTTAACCATCAACATTTTAAA
128937100 AAGAGTCAATTT
1 AAGAGTCAATTT
128937112 GTTATTTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (31 bp):
AAGAGTCAATTTTAACCATCAACATTTTAAA
Found at i:128942513 original size:5 final size:5
Alignment explanation
Indices: 128942503--128942531 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
128942493 TATAACTATA
128942503 TTTAT TTTAT TTTA- TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
128942532 ATATCTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:128942520 original size:14 final size:14
Alignment explanation
Indices: 128942501--128942531 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
128942491 TGTATAACTA
128942501 TATTTATTTTATTT
1 TATTTATTTTATTT
128942515 TATTTATTTTATTT
1 TATTTATTTTATTT
128942529 TAT
1 TAT
128942532 ATATCTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TATTTATTTTATTT
Found at i:128944591 original size:30 final size:30
Alignment explanation
Indices: 128944550--128944611 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
128944540 GAGAGGACCT
*
128944550 CCTGGTCCACCACCACCACGCCCTGGAATG
1 CCTGCTCCACCACCACCACGCCCTGGAATG
*
128944580 CCTGCTCCACCACCCCCACGCCCTGGAATG
1 CCTGCTCCACCACCACCACGCCCTGGAATG
128944610 CC
1 CC
128944612 GCCTCCCCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.18, C:0.52, G:0.18, T:0.13
Consensus pattern (30 bp):
CCTGCTCCACCACCACCACGCCCTGGAATG
Found at i:128947248 original size:22 final size:22
Alignment explanation
Indices: 128947207--128947248 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
128947197 TATACGAGAC
**
128947207 AAAAAACTTAAGTATCAATTTA
1 AAAAAACTTAAGTAAAAATTTA
128947229 AAAAAACTTAAGTAAAAATT
1 AAAAAACTTAAGTAAAAATT
128947249 ATGCATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.29
Consensus pattern (22 bp):
AAAAAACTTAAGTAAAAATTTA
Found at i:128950220 original size:51 final size:51
Alignment explanation
Indices: 128950144--128950240 Score: 194
Period size: 51 Copynumber: 1.9 Consensus size: 51
128950134 ACAAATTCAA
128950144 ACTAGGGGCTAATAGGATAGGTAGCTTCTCAAATGTATTTAAGTTTTATAG
1 ACTAGGGGCTAATAGGATAGGTAGCTTCTCAAATGTATTTAAGTTTTATAG
128950195 ACTAGGGGCTAATAGGATAGGTAGCTTCTCAAATGTATTTAAGTTT
1 ACTAGGGGCTAATAGGATAGGTAGCTTCTCAAATGTATTTAAGTTT
128950241 CCTATAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (51 bp):
ACTAGGGGCTAATAGGATAGGTAGCTTCTCAAATGTATTTAAGTTTTATAG
Found at i:128957655 original size:38 final size:39
Alignment explanation
Indices: 128957605--128957770 Score: 163
Period size: 46 Copynumber: 3.9 Consensus size: 39
128957595 CTGATATGAA
128957605 ATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTG
*
128957644 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGACAACC-----T--G
* *
128957689 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTG
*
128957728 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGACAAC
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGACAAC
128957771 ATGACAGAAA
Statistics
Matches: 108, Mismatches: 4, Indels: 23
0.80 0.03 0.17
Matches are distributed among these distances:
38 35 0.32
39 1 0.01
41 4 0.04
43 1 0.01
44 1 0.01
45 1 0.01
46 65 0.60
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (39 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTG
Found at i:128957711 original size:46 final size:46
Alignment explanation
Indices: 128957647--128957814 Score: 221
Period size: 46 Copynumber: 3.7 Consensus size: 46
128957637 CAACCTGTGT
* * * *
128957647 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGT
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
* *
128957693 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
* *
128957739 ATAAGACCATGGTTGAAAGATACCATGACAACATGACA-GAAAATGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGA
* * *
128957785 GTAAGACCATAGTTGAAAGACACTATGGCA
1 GTAAGACCATGGTTGAAAGATACCATGGCA
128957815 TCACATCAAA
Statistics
Matches: 107, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
45 1 0.01
46 106 0.99
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
Found at i:128958120 original size:23 final size:25
Alignment explanation
Indices: 128958075--128958121 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
128958065 AATAAATATA
*
128958075 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
128958100 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
128958122 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:128966498 original size:41 final size:40
Alignment explanation
Indices: 128966441--128966526 Score: 136
Period size: 41 Copynumber: 2.1 Consensus size: 40
128966431 AGGGACAGTC
128966441 ATTAACTCATCAGCTAGTTAACCATCATCCAACTGCAATA
1 ATTAACTCATCAGCTAGTTAACCATCATCCAACTGCAATA
* * *
128966481 ATTAACTGATGCAGCTAGTTAACCGTCATCTAACTGCAATA
1 ATTAACTCAT-CAGCTAGTTAACCATCATCCAACTGCAATA
128966522 ATTAA
1 ATTAA
128966527 TTAATGGAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 9 0.21
41 33 0.79
ACGTcount: A:0.37, C:0.23, G:0.10, T:0.29
Consensus pattern (40 bp):
ATTAACTCATCAGCTAGTTAACCATCATCCAACTGCAATA
Found at i:128966956 original size:18 final size:18
Alignment explanation
Indices: 128966935--128966970 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
128966925 AGTAGAATTG
*
128966935 AAATTTAAAAAATAAAAA
1 AAATATAAAAAATAAAAA
*
128966953 AAATATAAAAATTAAAAA
1 AAATATAAAAAATAAAAA
128966971 TGGCTAAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (18 bp):
AAATATAAAAAATAAAAA
Found at i:128968441 original size:17 final size:17
Alignment explanation
Indices: 128968421--128968455 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
128968411 TACAAAATTT
128968421 TAAAA-TATAATAAATAA
1 TAAAACTAT-ATAAATAA
128968438 TAAAACTATATAAATAA
1 TAAAACTATATAAATAA
128968455 T
1 T
128968456 TTAATATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.82
18 3 0.18
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAACTATATAAATAA
Found at i:128974811 original size:22 final size:20
Alignment explanation
Indices: 128974771--128974820 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
128974761 TCTTAATCAT
*
128974771 TTTAAGTTTTATATAATTACA
1 TTTAAATTTTATATAATTA-A
*
128974792 TTTAAATTTTATAATTATTAA
1 TTTAAATTTTAT-ATAATTAA
*
128974813 ATTAAATT
1 TTTAAATT
128974821 ATTGAACCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 19 0.76
22 6 0.24
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (20 bp):
TTTAAATTTTATATAATTAA
Found at i:128975134 original size:41 final size:41
Alignment explanation
Indices: 128975077--128975160 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
128975067 GTAGAAGTAA
128975077 GAGTAACATTGAATATGAATTCCATCGAATTTCTCTTACTT
1 GAGTAACATTGAATATGAATTCCATCGAATTTCTCTTACTT
128975118 GAGTAACATTGAATATGAATTCCATCGAATTTCTCTTACTT
1 GAGTAACATTGAATATGAATTCCATCGAATTTCTCTTACTT
128975159 GA
1 GA
128975161 TCGAACAACC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (41 bp):
GAGTAACATTGAATATGAATTCCATCGAATTTCTCTTACTT
Found at i:128976910 original size:35 final size:35
Alignment explanation
Indices: 128976883--128977009 Score: 164
Period size: 35 Copynumber: 3.5 Consensus size: 35
128976873 CATGGCAAAG
*
128976883 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
128976918 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
128976953 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
**
128976993 TAAGAAATGTAGGTATG
1 TGTGAAATGTAGGTATG
128977010 CATTTCCCAT
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
35 51 0.63
38 3 0.04
40 27 0.33
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:128977002 original size:75 final size:74
Alignment explanation
Indices: 128976883--128977052 Score: 210
Period size: 74 Copynumber: 2.4 Consensus size: 74
128976873 CATGGCAAAG
** *
128976883 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTAT-GCATT-TC
*
128976942 CCATACTGAGC
64 CCATACCGAGC
128976953 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGCATTTCCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGCATTTCCC
*
128977018 ATACCGAGT
66 ATACCGAGC
**
128977027 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
128977053 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
70 18 0.21
73 9 0.10
74 33 0.38
75 27 0.31
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.34
Consensus pattern (74 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGCATTTCCC
ATACCGAGC
Found at i:128979480 original size:13 final size:14
Alignment explanation
Indices: 128979464--128979499 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
128979454 CAATCTCATA
128979464 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
128979477 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
128979490 TCTC-ATTTCA
1 TCTCAATTTCA
128979500 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:128979489 original size:18 final size:19
Alignment explanation
Indices: 128979451--128979491 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
128979441 TGGTTCATGT
128979451 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
128979470 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
128979488 TTTC
1 TTTC
128979492 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:128979677 original size:23 final size:23
Alignment explanation
Indices: 128979596--128979676 Score: 137
Period size: 23 Copynumber: 3.5 Consensus size: 23
128979586 GCGGATTCCT
128979596 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
128979619 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
*
128979642 CCCAAACACACCCA-AATATTCAA
1 CCCAAACACA-CCAGAATATCCAA
128979665 CCCAAACACACC
1 CCCAAACACACC
128979677 CGGAATATTA
Statistics
Matches: 56, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
22 2 0.04
23 51 0.91
24 3 0.05
ACGTcount: A:0.47, C:0.42, G:0.02, T:0.09
Consensus pattern (23 bp):
CCCAAACACACCAGAATATCCAA
Found at i:128980196 original size:15 final size:15
Alignment explanation
Indices: 128980178--128980227 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
128980168 ATATATATAT
128980178 TATAATTTCAATCAA
1 TATAATTTCAATCAA
*
128980193 TATAAATTCAATCAA
1 TATAATTTCAATCAA
* *
128980208 AATGATTTCAATCAA
1 TATAATTTCAATCAA
128980223 TATAA
1 TATAA
128980228 ATTTGATAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.50, C:0.12, G:0.02, T:0.36
Consensus pattern (15 bp):
TATAATTTCAATCAA
Found at i:129008190 original size:3 final size:3
Alignment explanation
Indices: 129008182--129008223 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
129008172 TTTGCCCCTG
*
129008182 ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
129008224 CTTCCCTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:129008782 original size:17 final size:17
Alignment explanation
Indices: 129008762--129008796 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
129008752 TACAAAATTT
129008762 TAAAA-TATAATAAATAA
1 TAAAATTAT-ATAAATAA
129008779 TAAAATTATATAAATAA
1 TAAAATTATATAAATAA
129008796 T
1 T
129008797 TTAATTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.82
18 3 0.18
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TAAAATTATATAAATAA
Found at i:129010502 original size:8 final size:8
Alignment explanation
Indices: 129010491--129010516 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
129010481 TTCTACCAAT
129010491 CAACTTAG
1 CAACTTAG
129010499 CAACTTAG
1 CAACTTAG
129010507 CAACTTAG
1 CAACTTAG
129010515 CA
1 CA
129010517 GACACGCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.23
Consensus pattern (8 bp):
CAACTTAG
Found at i:129012792 original size:3 final size:3
Alignment explanation
Indices: 129012784--129012810 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
129012774 TTGGATTTGA
129012784 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
129012811 TGAAAATACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:129016250 original size:44 final size:45
Alignment explanation
Indices: 129016200--129016288 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 45
129016190 ACCTAAATAT
129016200 TAACTCATGAAGAACAATTTAAAG-AATTTACTATATCATTCCTC
1 TAACTCATGAAGAACAATTTAAAGAAATTTACTATATCATTCCTC
129016244 TAACTCATGAAGAACAATTTAAAGAAATTTACTATATCATTCCTC
1 TAACTCATGAAGAACAATTTAAAGAAATTTACTATATCATTCCTC
129016289 ACCTTTTTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 24 0.55
45 20 0.45
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.34
Consensus pattern (45 bp):
TAACTCATGAAGAACAATTTAAAGAAATTTACTATATCATTCCTC
Found at i:129020372 original size:21 final size:21
Alignment explanation
Indices: 129020347--129020390 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
129020337 AAAGTATAAA
129020347 CAAATATGTTTCTCACAAATT
1 CAAATATGTTTCTCACAAATT
*
129020368 CAAATATGTTTCTCACCAATT
1 CAAATATGTTTCTCACAAATT
129020389 CA
1 CA
129020391 TTGAGTAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (21 bp):
CAAATATGTTTCTCACAAATT
Found at i:129025967 original size:22 final size:22
Alignment explanation
Indices: 129025942--129025985 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
129025932 TTCTTAAAGG
129025942 AATTA-AAACAAAATAAGACTAA
1 AATTAGAAAC-AAATAAGACTAA
* *
129025964 AATTAGCAACAAATTAGACTAA
1 AATTAGAAACAAATAAGACTAA
129025986 TAAGTTGCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.61, C:0.11, G:0.07, T:0.20
Consensus pattern (22 bp):
AATTAGAAACAAATAAGACTAA
Found at i:129031017 original size:22 final size:23
Alignment explanation
Indices: 129031005--129031050 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
129030995 ATTTAAATGT
129031005 ATATTATTTATTA-TTAATCCTA
1 ATATTATTTATTATTTAATCCTA
129031027 ATATTATTTATTA-TTAATCCTA
1 ATATTATTTATTATTTAATCCTA
129031049 AT
1 AT
129031051 TGTACTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (23 bp):
ATATTATTTATTATTTAATCCTA
Found at i:129031059 original size:22 final size:22
Alignment explanation
Indices: 129031005--129031059 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
129030995 ATTTAAATGT
*
129031005 ATATTATTTATTATTAATCCTA
1 ATATTACTTATTATTAATCCTA
*
129031027 ATATTATTTATTATTAATCCTA
1 ATATTACTTATTATTAATCCTA
129031049 AT-TGTACTTAT
1 ATAT-TACTTAT
129031060 AACTAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 1 0.03
22 30 0.97
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.55
Consensus pattern (22 bp):
ATATTACTTATTATTAATCCTA
Found at i:129044895 original size:2 final size:2
Alignment explanation
Indices: 129044888--129044914 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
129044878 AACTTGTTCC
129044888 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
129044915 TTCATTTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:129051731 original size:3 final size:3
Alignment explanation
Indices: 129051723--129051756 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
129051713 GGTCCTTATG
129051723 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
129051757 ATTCCATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ATC
Found at i:129053384 original size:12 final size:12
Alignment explanation
Indices: 129053369--129053393 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
129053359 TTTCTTTTTA
129053369 CGAAGCAAATTT
1 CGAAGCAAATTT
129053381 CGAAGCAAATTT
1 CGAAGCAAATTT
129053393 C
1 C
129053394 CTGGTTTGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (12 bp):
CGAAGCAAATTT
Found at i:129065547 original size:19 final size:19
Alignment explanation
Indices: 129065520--129065557 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
129065510 TTGCCTAATG
*
129065520 TCAAGACATTCGTGGAAGA
1 TCAAAACATTCGTGGAAGA
*
129065539 TCAAAACATTTGTGGAAGA
1 TCAAAACATTCGTGGAAGA
129065558 CAATCAGGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (19 bp):
TCAAAACATTCGTGGAAGA
Found at i:129067154 original size:2 final size:2
Alignment explanation
Indices: 129067147--129067171 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
129067137 AGTCTCTTCA
129067147 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
129067172 GTATTTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:129072085 original size:3 final size:3
Alignment explanation
Indices: 129072077--129072102 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
129072067 CAGGCAGATA
129072077 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
129072103 AACATTTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:129075909 original size:21 final size:21
Alignment explanation
Indices: 129075870--129075909 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
129075860 TTGTTGAGGT
*
129075870 TAAAAATATTAATTTTAATTA
1 TAAAAATATTAATTATAATTA
129075891 TAAAAATATATAA-TATAAT
1 TAAAAATAT-TAATTATAAT
129075910 CTCTTTTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TAAAAATATTAATTATAATTA
Found at i:129077102 original size:27 final size:26
Alignment explanation
Indices: 129077072--129077129 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
129077062 GTAAATTTTG
*
129077072 ATTTGATGTAATTATATATATA-AAAAA
1 ATTT-ATG-AATTAAATATATACAAAAA
* *
129077099 ATTTATGATTTAAATATATACATAAA
1 ATTTATGAATTAAATATATACAAAAA
129077125 ATTTA
1 ATTTA
129077130 GATTTTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 11 0.41
26 12 0.44
27 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (26 bp):
ATTTATGAATTAAATATATACAAAAA
Found at i:129077137 original size:26 final size:25
Alignment explanation
Indices: 129077087--129077134 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
129077077 ATGTAATTAT
129077087 ATATATAAAAAAATTTATGATTTAA
1 ATATATAAAAAAATTTATGATTTAA
*
129077112 ATATATACATAAAATTTA-GATTT
1 ATATATA-AAAAAATTTATGATTT
129077135 TAATTTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (25 bp):
ATATATAAAAAAATTTATGATTTAA
Found at i:129077190 original size:21 final size:22
Alignment explanation
Indices: 129077140--129077194 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
129077130 GATTTTAATT
**
129077140 TAATTATATATATTTAAAGAAA
1 TAATTATATATAAATAAAGAAA
* *
129077162 TAA-AATATATAAATATA-AAA
1 TAATTATATATAAATAAAGAAA
129077182 TAATTATATATAA
1 TAATTATATATAA
129077195 TTTTACACTT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
20 6 0.22
21 18 0.67
22 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
TAATTATATATAAATAAAGAAA
Found at i:129077912 original size:16 final size:16
Alignment explanation
Indices: 129077876--129077915 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
129077866 ATATTACCAA
129077876 ATTTTTAAATAAAAAT
1 ATTTTTAAATAAAAAT
**
129077892 A-TTTTAAATAAATTT
1 ATTTTTAAATAAAAAT
129077907 ATTTTTAAA
1 ATTTTTAAA
129077916 AAGACTTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTTTTAAATAAAAAT
Found at i:129078505 original size:27 final size:25
Alignment explanation
Indices: 129078452--129078505 Score: 63
Period size: 27 Copynumber: 2.1 Consensus size: 25
129078442 ACTTTTGCAC
* *
129078452 ATGGGTGAGATAGAAAGAGGAGTGA
1 ATGGGTGAGATAGAAAGAGAAGAGA
*
129078477 ATGGGTGAGACTGAGCAAGAGAAGAGA
1 ATGGGTGAGA-T-AGAAAGAGAAGAGA
129078504 AT
1 AT
129078506 AATCATTATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.42
26 1 0.04
27 13 0.54
ACGTcount: A:0.41, C:0.04, G:0.41, T:0.15
Consensus pattern (25 bp):
ATGGGTGAGATAGAAAGAGAAGAGA
Found at i:129078999 original size:16 final size:16
Alignment explanation
Indices: 129078978--129079011 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
129078968 CAACTTTGTA
129078978 ATGATAGTACATCTCT
1 ATGATAGTACATCTCT
129078994 ATGATAGTACATCTCT
1 ATGATAGTACATCTCT
129079010 AT
1 AT
129079012 TCTATTCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (16 bp):
ATGATAGTACATCTCT
Found at i:129080886 original size:34 final size:34
Alignment explanation
Indices: 129080840--129080906 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
129080830 TAAAAGGGTG
* *
129080840 AAAAAAACAACATTAAATCACCATTGATCATGCT
1 AAAAAAAAAACATTAAATCACCATTGATAATGCT
129080874 AAAAAAAAAACATTAAATCACCATTGATAATGC
1 AAAAAAAAAACATTAAATCACCATTGATAATGC
129080907 CAGATAAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.54, C:0.18, G:0.06, T:0.22
Consensus pattern (34 bp):
AAAAAAAAAACATTAAATCACCATTGATAATGCT
Found at i:129082532 original size:3 final size:3
Alignment explanation
Indices: 129082526--129082585 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
129082516 TTTTGACGGA
129082526 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
129082574 ATT ATT ATT ATT
1 ATT ATT ATT ATT
129082586 TCTTTTAGTA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:129083437 original size:60 final size:60
Alignment explanation
Indices: 129083361--129083499 Score: 158
Period size: 60 Copynumber: 2.3 Consensus size: 60
129083351 TACACATTTT
* * * *
129083361 GGTACTTGTATTTGGCTTTAA-AGTTTAAATTGGTATCTAAAGTTT-TCTTTTGTCTAATTA
1 GGTACTTGAAATTGGCTTTAAGA-TTTAAATTGATATCTAAAGTTTAT-TTTGGTCTAATTA
* * *
129083421 GGTACTTGAAATTGGCTTTAAGATTTAATTTGATATCTAAAGTTTATTTTGGTTTGATTA
1 GGTACTTGAAATTGGCTTTAAGATTTAAATTGATATCTAAAGTTTATTTTGGTCTAATTA
*
129083481 GGTACCT-AAACTTGGCTTT
1 GGTACTTGAAA-TTGGCTTT
129083500 TTGATTCAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
59 3 0.04
60 63 0.93
61 2 0.03
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.47
Consensus pattern (60 bp):
GGTACTTGAAATTGGCTTTAAGATTTAAATTGATATCTAAAGTTTATTTTGGTCTAATTA
Found at i:129084181 original size:25 final size:24
Alignment explanation
Indices: 129084152--129084199 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
129084142 TTAAAAAAAT
129084152 TGTTGTTTAGTA-TATTTTATTATTA
1 TGTTG-TTAGTATTATTTT-TTATTA
*
129084177 TGTTGTTATTATTATTTTTTATT
1 TGTTGTTAGTATTATTTTTTATT
129084200 TAGATATTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (24 bp):
TGTTGTTAGTATTATTTTTTATTA
Found at i:129086963 original size:15 final size:15
Alignment explanation
Indices: 129086937--129086973 Score: 65
Period size: 15 Copynumber: 2.4 Consensus size: 15
129086927 GTGGTCTATG
129086937 TTATTCCGATTCTTCA
1 TTATT-CGATTCTTCA
129086953 TTATTCGATTCTTCA
1 TTATTCGATTCTTCA
129086968 TTATTC
1 TTATTC
129086974 ATCAAGTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.19, C:0.22, G:0.05, T:0.54
Consensus pattern (15 bp):
TTATTCGATTCTTCA
Found at i:129088550 original size:31 final size:31
Alignment explanation
Indices: 129088510--129088568 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
129088500 TGGATCTTGG
* * *
129088510 TCTTCAAATTTTTTGAAATTTTTTATTTTTT
1 TCTTCAAATTTGTTGAAAATTTTAATTTTTT
*
129088541 TCTTGAAATTTGTTGAAAATTTTAATTT
1 TCTTCAAATTTGTTGAAAATTTTAATTT
129088569 GCTCCTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.27, C:0.05, G:0.07, T:0.61
Consensus pattern (31 bp):
TCTTCAAATTTGTTGAAAATTTTAATTTTTT
Found at i:129094271 original size:29 final size:25
Alignment explanation
Indices: 129094217--129094266 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
129094207 CAAGCAAAAA
129094217 AAGAAAGAAGAGCTTGAGTTTATTT
1 AAGAAAGAAGAGCTTGAGTTTATTT
129094242 AAGAAAGAAGAGCTTGAGTTTATTT
1 AAGAAAGAAGAGCTTGAGTTTATTT
129094267 GTTTACTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (25 bp):
AAGAAAGAAGAGCTTGAGTTTATTT
Found at i:129105923 original size:15 final size:16
Alignment explanation
Indices: 129105903--129105938 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
129105893 TGATTTTTAA
129105903 AAAATATAAAAAT-AT
1 AAAATATAAAAATAAT
*
129105918 AAAATATTAAAATAAT
1 AAAATATAAAAATAAT
129105934 AAAAT
1 AAAAT
129105939 TATATATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAATATAAAAATAAT
Found at i:129106883 original size:17 final size:17
Alignment explanation
Indices: 129106857--129106890 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
129106847 TCATTAAATA
* *
129106857 TTATTTTTTTATTCAAT
1 TTATTATTTTATACAAT
129106874 TTATTATTTTATACAAT
1 TTATTATTTTATACAAT
129106891 AAATTACTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATTTTATACAAT
Found at i:129118948 original size:6 final size:6
Alignment explanation
Indices: 129118937--129118995 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
129118927 ATCATTGAAA
* * * *
129118937 TCTCTT TCTCTT TCCCTT TCCCTT TCCCTT TCTCTC TCTCTT TCCCTCTCT
1 TCTCTT TCTCTT TCTCTT TCTCTT TCTCTT TCTCTT TCTCTT T--CTCT-T
129118988 TCTCTT TC
1 TCTCTT TC
129118996 CCTCTCCCTT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
6 36 0.78
7 4 0.09
8 4 0.09
9 2 0.04
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (6 bp):
TCTCTT
Found at i:129118961 original size:12 final size:12
Alignment explanation
Indices: 129118940--129119007 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
129118930 ATTGAAATCT
*
129118940 CTTTCTCTTTCC
1 CTTTCCCTTTCC
129118952 CTTTCCCTTTCC
1 CTTTCCCTTTCC
* * *
129118964 CTTTCTCTCTCT
1 CTTTCCCTTTCC
*
129118976 CTTTCCCTCTCTTCT
1 CTTT-CC-CT-TTCC
*
129118991 CTTTCCCTCTCC
1 CTTTCCCTTTCC
129119003 CTTTC
1 CTTTC
129119008 GTCTTCTTCC
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
12 31 0.69
13 3 0.07
14 4 0.09
15 7 0.16
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (12 bp):
CTTTCCCTTTCC
Found at i:129127951 original size:201 final size:201
Alignment explanation
Indices: 129127606--129128009 Score: 790
Period size: 201 Copynumber: 2.0 Consensus size: 201
129127596 TTGTTCCCTA
129127606 TACAAAGCATTGCATGCAAAATATGCATCAACAACTGCAAGACAGCCACCTAGGAGATTCTAGAA
1 TACAAAGCATTGCATGCAAAATATGCATCAACAACTGCAAGACAGCCACCTAGGAGATTCTAGAA
129127671 AGAAAAGTTCACATTGAAGGTCATATTCAACAAATTTATAGAGTAAAGAGATATGCATCAGATTC
66 AGAAAAGTTCACATTGAAGGTCATATTCAACAAATTTATAGAGTAAAGAGATATGCATCAGATTC
*
129127736 ATCCAGATTCTAAAGAGTTCAACCATTGTAGCTACAAGAAGTCCGTATTATATCAATAAGCACAA
131 ATCCAGATTCTAAAGAGTTCAACCATTGTAGCTACAAGAAGTCCATATTATATCAATAAGCACAA
129127801 ACACAT
196 ACACAT
*
129127807 TACAAAGCATTGCATGCAAAATATGCATCAACAACTGCAAGACAGCCACCTAGGTGATTCTAGAA
1 TACAAAGCATTGCATGCAAAATATGCATCAACAACTGCAAGACAGCCACCTAGGAGATTCTAGAA
129127872 AGAAAAGTTCACATTGAAGGTCATATTCAACAAATTTATAGAGTAAAGAGATATGCATCAGATTC
66 AGAAAAGTTCACATTGAAGGTCATATTCAACAAATTTATAGAGTAAAGAGATATGCATCAGATTC
129127937 ATCCAGATTCTAAAGAGTTCAACCATTGTAGCTACAAGAAGTCCATATTATATCAATAAGCACAA
131 ATCCAGATTCTAAAGAGTTCAACCATTGTAGCTACAAGAAGTCCATATTATATCAATAAGCACAA
129128002 ACACAT
196 ACACAT
129128008 TA
1 TA
129128010 GTCCTTGTTA
Statistics
Matches: 201, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
201 201 1.00
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (201 bp):
TACAAAGCATTGCATGCAAAATATGCATCAACAACTGCAAGACAGCCACCTAGGAGATTCTAGAA
AGAAAAGTTCACATTGAAGGTCATATTCAACAAATTTATAGAGTAAAGAGATATGCATCAGATTC
ATCCAGATTCTAAAGAGTTCAACCATTGTAGCTACAAGAAGTCCATATTATATCAATAAGCACAA
ACACAT
Found at i:129156068 original size:50 final size:51
Alignment explanation
Indices: 129155981--129156083 Score: 145
Period size: 50 Copynumber: 2.0 Consensus size: 51
129155971 GAAAATATCT
* * *
129155981 TTCCGTTATTAAAATGAGTAATATTATTTAAGAGTATTTTAATATT-TCAC
1 TTCCGTTATTAAAATAAGTAATATTATTCAAGAGTATTATAATATTCTCAC
* * *
129156031 TTCCGTTATTAAAATAAGTAATATTATTCGAGGGTATTATAATCTTCTCAC
1 TTCCGTTATTAAAATAAGTAATATTATTCAAGAGTATTATAATATTCTCAC
129156082 TT
1 TT
129156084 TAAACAAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
50 40 0.87
51 6 0.13
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.45
Consensus pattern (51 bp):
TTCCGTTATTAAAATAAGTAATATTATTCAAGAGTATTATAATATTCTCAC
Found at i:129156278 original size:18 final size:18
Alignment explanation
Indices: 129156255--129156289 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
129156245 TCAAAATTTT
129156255 ATTTTAATATTT-TTATAC
1 ATTTTAAT-TTTATTATAC
129156273 ATTTTAATTTTATTATA
1 ATTTTAATTTTATTATA
129156290 AACATCTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (18 bp):
ATTTTAATTTTATTATAC
Done.