Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 57 of 444
Found at i:13839269 original size:6 final size:6
Alignment explanation
Indices: 13839258--13839287 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
13839248 CAATTAGGAC
13839258 TGCCTT TGCCTT TGCCTT TGCCTT TGCCTT
1 TGCCTT TGCCTT TGCCTT TGCCTT TGCCTT
13839288 AACCCTGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.17, T:0.50
Consensus pattern (6 bp):
TGCCTT
Found at i:13844805 original size:48 final size:48
Alignment explanation
Indices: 13844626--13845044 Score: 323
Period size: 48 Copynumber: 8.8 Consensus size: 48
13844616 TATGTGTGTT
* * * * *
13844626 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACGATATGAGAGTC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGATATGAGAGCC
* * * * * * *
13844674 AATGTAAAATCATGTTTGGAACATAGCATCGGCCATGATATAAGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGATATGAGAGCC
* * * *
13844722 AGTGTAAGACCATGTTTGGAACATGGTATCAGCAATG-TAATGAAAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGAT-ATGAGAGCC
* *
13844770 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATG-TAATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGAT-ATGAGAGCC
* * * * * * * * **
13844818 AGTGTAAAACTATATCTGGGACATGGCATCGGTATTGATATGTGTGTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGATATGAGAGCC
*
13844866 AGTGTAAGACCATGTCTGCG-ACATGGCATCGGCTACAT--TATGAAAGCC
1 AGTGTAAGACCATGTCTG-GAACATGGCATCGGC-A-ATGATATGAGAGCC
* ** * * * *
13844914 AGTGTAAGACCATGTCTGGGACATGGCATC-ATATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGATATGAGAGCC
* * * * *
13844961 AGTGTAAGACCATGTCTGGGACATGGCTTCAGC-CTCGACAT-ATGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAAT-GATATGA-GAGCC
** *
13845009 AGTGTAAGATTATGTTTGGAACATGGCATCGGCAAT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAAT
13845045 TCACCCTATT
Statistics
Matches: 295, Mismatches: 64, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
45 1 0.00
46 1 0.00
47 39 0.13
48 249 0.84
49 4 0.01
50 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGATATGAGAGCC
Found at i:13846557 original size:24 final size:24
Alignment explanation
Indices: 13846529--13846574 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
13846519 GGTAAACTAA
* *
13846529 ATTATGCTAATAAATGCTAAATAT
1 ATTATACTAATAAATACTAAATAT
13846553 ATTATACTAATAAATACTAAAT
1 ATTATACTAATAAATACTAAAT
13846575 CTTCTAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (24 bp):
ATTATACTAATAAATACTAAATAT
Found at i:13848728 original size:32 final size:33
Alignment explanation
Indices: 13848626--13848739 Score: 115
Period size: 33 Copynumber: 3.5 Consensus size: 33
13848616 TGTGTACATC
* **
13848626 CCTTTCCAAGTGGTACACACAAAGTATACCTTT
1 CCTTTCCAAGTGGTACACACAAAGTATACATAA
* * *
13848659 CCTTTTCATA-TGGTATACACAAAGTATACCTAA
1 CCTTTCCA-AGTGGTACACACAAAGTATACATAA
* *
13848692 CCTTTCCAAGT-GTACACACAAAGTGTACATAG
1 CCTTTCCAAGTGGTACACACAAAGTATACATAA
* *
13848724 CCTTTACAAGTTGTAC
1 CCTTTCCAAGTGGTAC
13848740 CATTTGGGTA
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
32 28 0.41
33 39 0.57
34 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (33 bp):
CCTTTCCAAGTGGTACACACAAAGTATACATAA
Found at i:13856935 original size:22 final size:23
Alignment explanation
Indices: 13856910--13856955 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
13856900 TCAACCAAAC
13856910 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
13856932 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
13856955 A
1 A
13856956 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:13856961 original size:23 final size:23
Alignment explanation
Indices: 13856917--13856961 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
13856907 AACAATTCAA
*
13856917 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
13856940 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
13856962 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:13860412 original size:24 final size:24
Alignment explanation
Indices: 13860385--13860435 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
13860375 ATCGTAGGTC
* * *
13860385 AATAAATTATGCTAATACATGTTA
1 AATAAATTATACTAATAAATATTA
*
13860409 AATATATTATACTAATAAATATTA
1 AATAAATTATACTAATAAATATTA
13860433 AAT
1 AAT
13860436 CTTCTAGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.39
Consensus pattern (24 bp):
AATAAATTATACTAATAAATATTA
Found at i:13861618 original size:19 final size:19
Alignment explanation
Indices: 13861596--13861632 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
13861586 CATGTTTTTC
*
13861596 TATTTTTTAAAATAAATTT
1 TATTTATTAAAATAAATTT
*
13861615 TATTTATTAAATTAAATT
1 TATTTATTAAAATAAATT
13861633 AATTAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTTATTAAAATAAATTT
Found at i:13878564 original size:2 final size:2
Alignment explanation
Indices: 13878557--13878616 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
13878547 TTTTGAAGGG
13878557 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13878599 TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
13878617 CATTAGTAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13881372 original size:3 final size:3
Alignment explanation
Indices: 13881364--13881505 Score: 166
Period size: 3 Copynumber: 48.0 Consensus size: 3
13881354 AGTATGTAGG
* * * *
13881364 TAA TAA TAA TAA -AA TAA TAA TAGA AAA TAA TAA TAG TAC TAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
* * * *
13881409 TAA TAA TAA TGA TAA TAA TAA T-A TAA AAA TAA -AA -AA TAA TGA TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
13881454 TAA TACA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
13881500 TAA TAA
1 TAA TAA
13881506 AAGTTTTAAA
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
2 8 0.07
3 106 0.89
4 5 0.04
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:13881671 original size:29 final size:29
Alignment explanation
Indices: 13881637--13881762 Score: 103
Period size: 29 Copynumber: 4.3 Consensus size: 29
13881627 TTAGTATATA
*
13881637 AATAGAAATAGAAATAGAAATATAATAAT
1 AATAGAAATATAAATAGAAATATAATAAT
* *
13881666 AGTAGAAATATAAATAGATAA-ATAAAAAT
1 AATAGAAATATAAATAGA-AATATAATAAT
* * * * * *
13881695 TAGATAAATA-ATAATAGTATTAGAATAAT
1 AATAGAAATATA-AATAGAAATATAATAAT
* * *
13881724 AAAATAAATATAAATAGAAACATAATAAT
1 AATAGAAATATAAATAGAAATATAATAAT
*
13881753 AATAGCAATA
1 AATAGAAATA
13881763 ATATATTAAG
Statistics
Matches: 73, Mismatches: 20, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
28 2 0.03
29 68 0.93
30 3 0.04
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (29 bp):
AATAGAAATATAAATAGAAATATAATAAT
Found at i:13881683 original size:12 final size:12
Alignment explanation
Indices: 13881632--13881661 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
13881622 TAATATTAGT
13881632 ATATAAATAGAA
1 ATATAAATAGAA
*
13881644 ATAGAAATAGAA
1 ATATAAATAGAA
13881656 ATATAA
1 ATATAA
13881662 TAATAGTAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23
Consensus pattern (12 bp):
ATATAAATAGAA
Found at i:13881698 original size:15 final size:14
Alignment explanation
Indices: 13881642--13881741 Score: 62
Period size: 15 Copynumber: 6.9 Consensus size: 14
13881632 ATATAAATAG
*
13881642 AAATAGAAATAGA-
1 AAATAAAAATAGAT
* *
13881655 AATATAATAATAGTAG
1 AA-ATAAAAATAG-AT
*
13881671 AAATATAAATAGAT
1 AAATAAAAATAGAT
13881685 AAATAAAAATTAGAT
1 AAATAAAAA-TAGAT
*
13881700 AAATAATAATAGTATT
1 AAATAAAAATAG-A-T
*
13881716 AGAATAATAA-A-AT
1 A-AATAAAAATAGAT
*
13881729 AAATATAAATAGA
1 AAATAAAAATAGA
13881742 AACATAATAA
Statistics
Matches: 69, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
12 6 0.09
13 5 0.07
14 22 0.32
15 23 0.33
16 5 0.07
17 8 0.12
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (14 bp):
AAATAAAAATAGAT
Found at i:13882294 original size:11 final size:10
Alignment explanation
Indices: 13882272--13882310 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
13882262 TAACTAATTT
*
13882272 AATAAATTAA
1 AATAAATAAA
13882282 AATAAAATAAA
1 AAT-AAATAAA
13882293 AATAAATAAA
1 AATAAATAAA
13882303 AA-AAATAA
1 AATAAATAA
13882311 TATCTTCCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
9 6 0.22
10 12 0.44
11 9 0.33
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (10 bp):
AATAAATAAA
Found at i:13884119 original size:23 final size:24
Alignment explanation
Indices: 13884066--13884125 Score: 59
Period size: 25 Copynumber: 2.5 Consensus size: 24
13884056 ACTTTTAACA
** *
13884066 TTTAATAATTTTATATATTTTTACT
1 TTTAA-AATTTTATATATAATCACT
13884091 TATTAAAATTTTATATATAATCA-T
1 T-TTAAAATTTTATATATAATCACT
*
13884115 TTTAATATTTT
1 TTTAAAATTTT
13884126 TTTAATGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
23 9 0.30
24 2 0.07
25 15 0.50
26 4 0.13
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (24 bp):
TTTAAAATTTTATATATAATCACT
Found at i:13885611 original size:36 final size:37
Alignment explanation
Indices: 13885551--13885621 Score: 92
Period size: 36 Copynumber: 1.9 Consensus size: 37
13885541 TACATGTTGT
**
13885551 TTTATTTTTTTTATTTTTTAAAA-TTA-ATATTATAA
1 TTTATTTTTTTTATAGTTTAAAATTTATATATTATAA
*
13885586 TTTATTTTCTTTTATAGTTTCAAATTTATATATTAT
1 TTTATTTT-TTTTATAGTTTAAAATTTATATATTAT
13885622 TTAAAAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
35 8 0.27
36 12 0.40
37 3 0.10
38 7 0.23
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (37 bp):
TTTATTTTTTTTATAGTTTAAAATTTATATATTATAA
Found at i:13885688 original size:15 final size:15
Alignment explanation
Indices: 13885665--13885708 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
13885655 TAGGTAACAA
13885665 TAATTAAAAA-TATAT
1 TAATTAAAAATTA-AT
*
13885680 TATTTAAAAATTAAT
1 TAATTAAAAATTAAT
13885695 TAATTAAAAATTAA
1 TAATTAAAAATTAA
13885709 ACGTATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 24 0.92
16 2 0.08
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATTAAAAATTAAT
Found at i:13894489 original size:28 final size:28
Alignment explanation
Indices: 13894433--13894490 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
13894423 TGTGTGAAGC
* * **
13894433 AAGAAATGCACTTCAAAATCCAGTTATA
1 AAGAAATACACTTAAAAATCCAGAGATA
13894461 AAGAAATACACTTAAAAATCCAGAGATA
1 AAGAAATACACTTAAAAATCCAGAGATA
13894489 AA
1 AA
13894491 TCAGAAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.53, C:0.16, G:0.10, T:0.21
Consensus pattern (28 bp):
AAGAAATACACTTAAAAATCCAGAGATA
Found at i:13896048 original size:45 final size:45
Alignment explanation
Indices: 13895961--13896049 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 45
13895951 GGTGGCTAAA
* *
13895961 ATCTGCTCCATAGCCGATATATGAAGATAAGACTCGCCATTTTCG
1 ATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCAATTTTCG
* *
13896006 ATCTGCTCCATAGCTGATACATGGAGATAAGA-TCTGCAATTTTC
1 ATCTGCTCCATAGCCGATACATGAAGATAAGACTC-GCAATTTTC
13896050 AGTCTACTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 2 0.05
45 37 0.95
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCAATTTTCG
Found at i:13896182 original size:176 final size:177
Alignment explanation
Indices: 13895843--13896615 Score: 1126
Period size: 176 Copynumber: 4.4 Consensus size: 177
13895833 TCCTATTGCC
* * * * * *
13895843 GATACATGAAGATAAAATCTGTAATTTTTAGTCTGCTTTCTTGTTACCTTAGGAAGATAAGACTT
1 GATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTCGCTACCTCAGGAAGATAAGACTT
13895908 GTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATA
66 GTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGA-AAGGCTGGTGGCTAAAATCTGCTCCATA
* *
13895973 GCCGATATATGAAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCT
130 GCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCT
* * * *
13896021 GATACATGGAGATAAGATCTGCAATTTTCAGTCTACTTCCTCGCTACCTCAGGAATATAAGACTT
1 GATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTCGCTACCTCAGGAAGATAAGACTT
* *
13896086 GTATCTTCAACATACTCTCTTGCTACCTCAGAGAG-AAGGCTGGTGGCTAAAATCTGCTCCATAG
66 GTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGAAAGGCTGGTGGCTAAAATCTGCTCCATAG
* * * *
13896150 TCAATACATGGAGATAAGACGCGCCATTTTCGATCTGCTCCATAGCC
131 CCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCT
* * * *
13896197 GATACATGGAGATAAGATCTGCAATTTTCAGTTTGCTTCCTCGCTACCTCAGGAAGATAAGACAT
1 GATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTCGCTACCTCAGGAAGATAAGACTT
13896262 GTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAG-AAGGCTGGTGGCTAAAATCTGCTCCATAG
66 GTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGAAAGGCTGGTGGCTAAAATCTGCTCCATAG
* *
13896326 CCGATACATGGAGATAAGACTTGCCATTTTCGATCTGCTCCATAGCA
131 CCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCT
* * * *
13896373 GATACATGGAGATAAGATCTATAATTTTTAGTCTGCTTCTTTGCTACTTCAGGAAGATAAGACTT
1 GATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTCGCTACCTCAGGAAGATAAGACTT
* * *
13896438 GTATCTTCAACCTGTTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCTATT
66 GTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGA-AAGGCTGGTGGCTAAAATCTGCTCCATA
* *
13896503 GCCGATACATGGAGATAAGACCCGCCATTTTCGATCTGCTCTACTA-CT
130 GCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCA-TAGCT
* * * * *
13896551 GCT-TA-GTGAGATAAGATATGTAATTTTTAGTCTGCTTCCT-GCAACTTCAGGAAGATAAGACT
1 GATACATG-GAGATAAGATCTGTAATTTTTAGTCTGCTTCCTCGCTACCTCAGGAAGATAAGACT
13896613 TGT
65 TGT
13896616 GAATTCACCG
Statistics
Matches: 541, Mismatches: 50, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
176 351 0.65
177 31 0.06
178 157 0.29
179 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (177 bp):
GATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTCGCTACCTCAGGAAGATAAGACTT
GTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGAAAGGCTGGTGGCTAAAATCTGCTCCATAG
CCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCT
Found at i:13898310 original size:15 final size:15
Alignment explanation
Indices: 13898275--13898326 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
13898265 TTTCACAATA
* *
13898275 TTTTTTGTTGTTTTTG
1 TTTTTTGTT-TCTTTC
*
13898291 TTTTTGTTTTTCTTTC
1 TTTTT-TGTTTCTTTC
13898307 TTTTTTGTTTCTTTC
1 TTTTTTGTTTCTTTC
13898322 TTTTT
1 TTTTT
13898327 GGCTGCCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
15 14 0.45
16 14 0.45
17 3 0.10
ACGTcount: A:0.00, C:0.08, G:0.10, T:0.83
Consensus pattern (15 bp):
TTTTTTGTTTCTTTC
Found at i:13903028 original size:21 final size:21
Alignment explanation
Indices: 13903004--13903054 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
13902994 AAAATAAAGA
13903004 AAATAAAAAAAAAAC-ATATTG
1 AAATAAAAAAAAAACTA-ATTG
* *
13903025 AAATGAAAGAAAAACTCAATTG
1 AAATAAAAAAAAAACT-AATTG
13903047 AAATAAAA
1 AAATAAAA
13903055 TCAAACTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 13 0.52
22 11 0.44
23 1 0.04
ACGTcount: A:0.69, C:0.06, G:0.08, T:0.18
Consensus pattern (21 bp):
AAATAAAAAAAAAACTAATTG
Found at i:13909429 original size:24 final size:24
Alignment explanation
Indices: 13909397--13909443 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
13909387 AATAGGCCTA
13909397 AATTTTTTTATTTTTAAATTAGCT
1 AATTTTTTTATTTTTAAATTAGCT
13909421 AATTTTTTTATTTTTAAATTAGC
1 AATTTTTTTATTTTTAAATTAGC
13909444 CCAAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (24 bp):
AATTTTTTTATTTTTAAATTAGCT
Found at i:13909453 original size:25 final size:24
Alignment explanation
Indices: 13909401--13909453 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
13909391 GGCCTAAATT
* **
13909401 TTTTTATTTTTAAATTAGCTAATT
1 TTTTTATTTTTAAATTAGCCAAAA
13909425 TTTTTATTTTTAAATTAGCCCAAAA
1 TTTTTATTTTTAAATTAG-CCAAAA
13909450 TTTT
1 TTTT
13909454 AATTGCTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 18 0.72
25 7 0.28
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.58
Consensus pattern (24 bp):
TTTTTATTTTTAAATTAGCCAAAA
Found at i:13909685 original size:24 final size:26
Alignment explanation
Indices: 13909632--13909691 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 26
13909622 TTATATTTTA
*
13909632 TTAATTAAATAT-TTTTTAATATATG
1 TTAATTATATATATTTTTAATATATG
13909657 -T-ATTATATATATTTTTAA-A-ATG
1 TTAATTATATATATTTTTAATATATG
*
13909679 TTAATTATGTATA
1 TTAATTATATATA
13909692 AATATTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
22 3 0.10
23 10 0.33
24 17 0.57
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (26 bp):
TTAATTATATATATTTTTAATATATG
Found at i:13909823 original size:25 final size:25
Alignment explanation
Indices: 13909769--13909828 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
13909759 ATTTATATTT
* *
13909769 TATTAAATATTTTTTTATATATATG
1 TATTATATATTTTTTTATATAAATG
13909794 TATTATATATTTTTTTA-A-AAATG
1 TATTATATATTTTTTTATATAAATG
13909817 ATAATTATATAT
1 -T-ATTATATAT
13909829 AAATAATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 4 0.13
24 2 0.06
25 25 0.81
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (25 bp):
TATTATATATTTTTTTATATAAATG
Found at i:13911308 original size:13 final size:13
Alignment explanation
Indices: 13911290--13911314 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13911280 TCCTGTTTTA
13911290 CATATGTTTGTTG
1 CATATGTTTGTTG
13911303 CATATGTTTGTT
1 CATATGTTTGTT
13911315 ATCTTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.20, T:0.56
Consensus pattern (13 bp):
CATATGTTTGTTG
Found at i:13919754 original size:15 final size:15
Alignment explanation
Indices: 13919734--13919762 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
13919724 TCCTTGGTAT
13919734 CAGGATATATTGCGC
1 CAGGATATATTGCGC
13919749 CAGGATATATTGCG
1 CAGGATATATTGCG
13919763 ATATATGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (15 bp):
CAGGATATATTGCGC
Found at i:13922217 original size:30 final size:30
Alignment explanation
Indices: 13922181--13922245 Score: 130
Period size: 30 Copynumber: 2.2 Consensus size: 30
13922171 CGAAGATAGT
13922181 AGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 AGATTTGGCGTCTCTGTATTGTCAGAGAGC
13922211 AGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 AGATTTGGCGTCTCTGTATTGTCAGAGAGC
13922241 AGATT
1 AGATT
13922246 GAAGATGATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (30 bp):
AGATTTGGCGTCTCTGTATTGTCAGAGAGC
Found at i:13922274 original size:44 final size:44
Alignment explanation
Indices: 13922210--13922383 Score: 251
Period size: 44 Copynumber: 3.9 Consensus size: 44
13922200 TGTCAGAGAG
* *
13922210 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATTGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
* *
13922254 TAGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGA-AA
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
13922297 GCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
1 -CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
* * * *
13922342 CAGATTTGGCATCTCTGTATTTGACGGGGAGCAGATCGAAGA
1 CAGATTTGGCGTCTCTGTA-TTGTCAGAGAGCAGATCGAAGA
13922384 CATAGCAGAT
Statistics
Matches: 117, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
43 1 0.01
44 95 0.81
45 21 0.18
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.28
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
Found at i:13924158 original size:24 final size:24
Alignment explanation
Indices: 13924126--13924172 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
13924116 AATAGGCCTA
13924126 AATTTTTTTATTTTTAAATTAGCT
1 AATTTTTTTATTTTTAAATTAGCT
13924150 AATTTTTTTATTTTTAAATTAGC
1 AATTTTTTTATTTTTAAATTAGC
13924173 CCAAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (24 bp):
AATTTTTTTATTTTTAAATTAGCT
Found at i:13924182 original size:25 final size:24
Alignment explanation
Indices: 13924130--13924182 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
13924120 GGCCTAAATT
* **
13924130 TTTTTATTTTTAAATTAGCTAATT
1 TTTTTATTTTTAAATTAGCCAAAA
13924154 TTTTTATTTTTAAATTAGCCCAAAA
1 TTTTTATTTTTAAATTAG-CCAAAA
13924179 TTTT
1 TTTT
13924183 AATTGCTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 18 0.72
25 7 0.28
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.58
Consensus pattern (24 bp):
TTTTTATTTTTAAATTAGCCAAAA
Found at i:13924315 original size:5 final size:5
Alignment explanation
Indices: 13924305--13924334 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
13924295 GAAATCCATT
13924305 TATTA TATTA TATTA TA-TA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA TATTA T
13924335 GGTACATGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:13924327 original size:14 final size:13
Alignment explanation
Indices: 13924304--13924334 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
13924294 GGAAATCCAT
13924304 TTATTATATTATA
1 TTATTATATTATA
13924317 TTATATATATTATA
1 TTAT-TATATTATA
13924331 TTAT
1 TTAT
13924335 GGTACATGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTATTATATTATA
Found at i:13924346 original size:19 final size:19
Alignment explanation
Indices: 13924305--13924353 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
13924295 GAAATCCATT
* *
13924305 TATTATATTATATTATATA
1 TATTATATTATAGTACATA
* *
13924324 TATTATATTATGGTACATG
1 TATTATATTATAGTACATA
13924343 TATTAT-TTATA
1 TATTATATTATA
13924354 TTTTATTAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (19 bp):
TATTATATTATAGTACATA
Found at i:13924412 original size:24 final size:26
Alignment explanation
Indices: 13924359--13924418 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 26
13924349 TTATATTTTA
*
13924359 TTAATTAAATAT-TTTTTAATATATG
1 TTAATTATATATATTTTTAATATATG
13924384 -T-ATTATATATATTTTTAA-A-ATG
1 TTAATTATATATATTTTTAATATATG
*
13924406 TTAATTATGTATA
1 TTAATTATATATA
13924419 AATATTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
22 3 0.10
23 10 0.33
24 17 0.57
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (26 bp):
TTAATTATATATATTTTTAATATATG
Found at i:13924492 original size:139 final size:134
Alignment explanation
Indices: 13924308--13924594 Score: 383
Period size: 139 Copynumber: 2.1 Consensus size: 134
13924298 ATCCATTTAT
13924308 TATATTATATTATATATATTATATTATGGTACATGTATTATTTATATTTTATTAATTAAATATTT
1 TATATTATATTATATATATTATATTATGGTACATGTATTATTTATATTTTATTAA--AAAT-TTT
* *
13924373 TTTA-ATATATGTATTATATATATTTTT-AAAATGTTAATTATGTATAAATATTATAAAATTATT
63 TTTATATATATGTATTATATATATTTTTAAAAATGATAATTATATATAAATA--ATAAAATTATT
13924436 TTATTTTTG
126 TTATTTTTG
* * * *
13924445 TATATTATGTATTAT-TATCTTATTTATATGGTATATGTATTATTTATATTTTATTAAATATTTT
1 TATATTA--TATTATATATATTATAT-TATGGTACATGTATTATTTATATTTTATTAAAAATTTT
*
13924509 TTTATATATATGTATTATATATTTTTTTAAAAATGATAATTATATATAAATAATAAAATTA--TT
63 TTTATATATATGTATTATATATATTTTTAAAAATGATAATTATATATAAATAATAAAATTATTTT
13924572 -TTTTTG
128 ATTTTTG
13924578 T-TATTATATTAT-TATAT
1 TATATTATATTATATATAT
13924595 GTTTCTTATA
Statistics
Matches: 137, Mismatches: 8, Indels: 17
0.85 0.05 0.10
Matches are distributed among these distances:
130 10 0.07
132 5 0.04
133 7 0.05
134 2 0.01
136 16 0.12
137 32 0.23
138 29 0.21
139 36 0.26
ACGTcount: A:0.37, C:0.01, G:0.05, T:0.57
Consensus pattern (134 bp):
TATATTATATTATATATATTATATTATGGTACATGTATTATTTATATTTTATTAAAAATTTTTTT
ATATATATGTATTATATATATTTTTAAAAATGATAATTATATATAAATAATAAAATTATTTTATT
TTTG
Found at i:13924550 original size:25 final size:25
Alignment explanation
Indices: 13924496--13924555 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
13924486 ATTTATATTT
* *
13924496 TATTAAATATTTTTTTATATATATG
1 TATTATATATTTTTTTATATAAATG
13924521 TATTATATATTTTTTTA-A-AAATG
1 TATTATATATTTTTTTATATAAATG
13924544 ATAATTATATAT
1 -T-ATTATATAT
13924556 AAATAATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 4 0.13
24 2 0.06
25 25 0.81
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (25 bp):
TATTATATATTTTTTTATATAAATG
Found at i:13924586 original size:137 final size:137
Alignment explanation
Indices: 13924303--13924592 Score: 396
Period size: 137 Copynumber: 2.1 Consensus size: 137
13924293 CGGAAATCCA
13924303 TTTATTATATTA-TATTATATATATTATATTATGGTACATGTATTATTTATATTTTATTAATTAA
1 TTTATTATATTATTATTATATATATTATATTATGGTACATGTATTATTTATATTTTATTAA-TAA
* *
13924367 ATATTTTTTAATATATGTATTATATATATTTTTAAAATGTTAATTATGTATAAATATTATAAAAT
65 ATATTTTTTAATATATGTATTATATATATTTTTAAAATGATAATTATATATAAATA-TATAAAAT
13924432 TATTTTATT
129 TATTTTATT
* * * *
13924441 TTT-GTATATTATGTATTAT-TATCTTATTTATATGGTATATGTATTATTTATATTTTATTAA-A
1 TTTATTATATTAT-TATTATATATATTATAT-TATGGTACATGTATTATTTATATTTTATTAATA
* *
13924503 TAT-TTTTTTATATATATGTATTATATATTTTTTTAAAAATGATAATTATATATAAATA-ATAAA
64 AATATTTTTTA-ATATATGTATTATATATATTTTT-AAAATGATAATTATATATAAATATATAAA
13924566 ATTATTTT-TT
127 ATTATTTTATT
13924576 TGTTATTATATTATTAT
1 T-TTATTATATTATTAT
13924593 ATGTTTCTTA
Statistics
Matches: 136, Mismatches: 9, Indels: 16
0.84 0.06 0.10
Matches are distributed among these distances:
135 3 0.02
136 25 0.18
137 40 0.29
138 32 0.24
139 36 0.26
ACGTcount: A:0.37, C:0.01, G:0.05, T:0.58
Consensus pattern (137 bp):
TTTATTATATTATTATTATATATATTATATTATGGTACATGTATTATTTATATTTTATTAATAAA
TATTTTTTAATATATGTATTATATATATTTTTAAAATGATAATTATATATAAATATATAAAATTA
TTTTATT
Found at i:13926036 original size:13 final size:13
Alignment explanation
Indices: 13926018--13926042 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13926008 TCCTGTTTTA
13926018 CATATGTTTGTTG
1 CATATGTTTGTTG
13926031 CATATGTTTGTT
1 CATATGTTTGTT
13926043 ATCTTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.20, T:0.56
Consensus pattern (13 bp):
CATATGTTTGTTG
Found at i:13930899 original size:18 final size:18
Alignment explanation
Indices: 13930876--13930915 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
13930866 TTATTTCATA
*
13930876 TATTTCATT-TCTATATTC
1 TATTTCATTAACT-TATTC
13930894 TATTTCATTAACTTATTC
1 TATTTCATTAACTTATTC
13930912 TATT
1 TATT
13930916 CCATATCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.25, C:0.15, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTTCATTAACTTATTC
Found at i:13931530 original size:23 final size:23
Alignment explanation
Indices: 13931476--13931530 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
13931466 GACACACGAG
*
13931476 GTGCCTGAAATATAACACATAAA
1 GTGCCTGATATATAACACATAAA
* *
13931499 GTGCCTGATTTATGACACATAAA
1 GTGCCTGATATATAACACATAAA
13931522 GTGCCTGAT
1 GTGCCTGAT
13931531 CGGCAAAGTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (23 bp):
GTGCCTGATATATAACACATAAA
Found at i:13931647 original size:17 final size:18
Alignment explanation
Indices: 13931615--13931648 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13931605 TAATAGGGAA
13931615 TTTTAATTCTCAATTCAC
1 TTTTAATTCTCAATTCAC
*
13931633 TTTTATTTC-CAATTCA
1 TTTTAATTCTCAATTCA
13931649 AGATCACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.26, C:0.21, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTTAATTCTCAATTCAC
Found at i:13932827 original size:26 final size:26
Alignment explanation
Indices: 13932798--13932987 Score: 240
Period size: 26 Copynumber: 7.2 Consensus size: 26
13932788 TGGTACAAAT
*
13932798 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
13932824 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
13932850 TGATAAT-GGATTAGGTAAATATTCAA
1 TGATAATAGG-TTAGGTAAATGTTCCA
*
13932876 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
13932902 TGATAATGGATTAGTTAGGTAAATATTCTA
1 TGATAAT--A--GGTTAGGTAAATGTTCCA
*
13932932 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
13932958 TGATAAT-GGTTTAGGTAAATGTTCCA
1 TGATAATAGG-TTAGGTAAATGTTCCA
13932984 TGAT
1 TGAT
13932988 GGGCATTTCA
Statistics
Matches: 144, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.03
26 116 0.81
27 2 0.01
30 22 0.15
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:13932946 original size:56 final size:55
Alignment explanation
Indices: 13932807--13932968 Score: 251
Period size: 56 Copynumber: 3.0 Consensus size: 55
13932797 TTGATAATAG
* *
13932807 GTTAGGTAAATGTT-TCATGATAATAGGTTAGGTAAATGTTCCATGATAATGG--A
1 GTTAGGTAAATATTCT-ATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTA
*
13932860 -TTAGGTAAATATTCAATGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTA
1 GTTAGGTAAATATTCTATGATAATGGGTTAGGTAAATGTTCCATGATAATGG-TTA
13932915 GTTAGGTAAATATTCTATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTT
1 GTTAGGTAAATATTCTATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTT
13932969 TAGGTAAATG
Statistics
Matches: 100, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
52 47 0.47
55 3 0.03
56 50 0.50
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (55 bp):
GTTAGGTAAATATTCTATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTA
Found at i:13934522 original size:25 final size:25
Alignment explanation
Indices: 13934474--13934522 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
13934464 ACAATTTTAC
13934474 CCCTAGGAGATAAATTACCGAAATA
1 CCCTAGGAGATAAATTACCGAAATA
* *
13934499 CCCTAGG-GTTAAATTGACCTAAAT
1 CCCTAGGAGATAAATT-ACCGAAAT
13934523 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (25 bp):
CCCTAGGAGATAAATTACCGAAATA
Found at i:13938745 original size:24 final size:25
Alignment explanation
Indices: 13938689--13938839 Score: 224
Period size: 24 Copynumber: 6.2 Consensus size: 25
13938679 ATTGATAAAT
*
13938689 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
*
13938715 TGATAATGGATTAGGTAAAT-TTCA
1 TGATAATGGGTTAGGTAAATGTTCA
13938739 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
13938765 TGATAATGGGTTAGGTAAAT-TTCA
1 TGATAATGGGTTAGGTAAATGTTCA
13938789 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
13938814 TGATAAT--G--AGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
13938835 TGATA
1 TGATA
13938840 TTTCATGTCT
Statistics
Matches: 119, Mismatches: 3, Indels: 11
0.89 0.02 0.08
Matches are distributed among these distances:
21 18 0.15
23 1 0.01
24 43 0.36
25 17 0.14
26 40 0.34
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:13938751 original size:50 final size:50
Alignment explanation
Indices: 13938689--13938821 Score: 241
Period size: 50 Copynumber: 2.7 Consensus size: 50
13938679 ATTGATAAAT
*
13938689 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATTTCA
*
13938739 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATTTCA
13938789 TGATAATGGGTTAGGTAAATGTT-CATGATAATG
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATG
13938822 AGGTAAATGT
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
49 10 0.12
50 71 0.88
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (50 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATTTCA
Found at i:13940362 original size:24 final size:25
Alignment explanation
Indices: 13940326--13940373 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
13940316 ACAGTTTTAC
13940326 CCCTAGGAGTAAATT-ACCGAAATA
1 CCCTAGGAGTAAATTGACCGAAATA
*
13940350 CCCTAGG-GTTAAATTGACCTAAAT
1 CCCTAGGAG-TAAATTGACCGAAAT
13940374 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 1 0.05
24 13 0.62
25 7 0.33
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.25
Consensus pattern (25 bp):
CCCTAGGAGTAAATTGACCGAAATA
Found at i:13947054 original size:14 final size:15
Alignment explanation
Indices: 13947030--13947058 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
13947020 TTTCAGCTTC
13947030 TGCTATTCTTTCTTT
1 TGCTATTCTTTCTTT
13947045 TGCT-TTCTTTCTTT
1 TGCTATTCTTTCTTT
13947059 ATTTCATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.03, C:0.21, G:0.07, T:0.69
Consensus pattern (15 bp):
TGCTATTCTTTCTTT
Found at i:13947763 original size:20 final size:19
Alignment explanation
Indices: 13947717--13947763 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
13947707 GCCCTTTTTT
*
13947717 CCTAATTTCTCTTAATTAAG
1 CCTAA-TTCACTTAATTAAG
13947737 -CTAAATTCACTTAATTAAAG
1 CCT-AATTCACTTAATT-AAG
13947757 CCTAATT
1 CCTAATT
13947764 AAACACACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 12 0.52
20 9 0.39
21 2 0.09
ACGTcount: A:0.36, C:0.19, G:0.04, T:0.40
Consensus pattern (19 bp):
CCTAATTCACTTAATTAAG
Found at i:13950625 original size:20 final size:20
Alignment explanation
Indices: 13950600--13950653 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
13950590 CCCCGAATCA
13950600 AGGCCATCAATGCACTGTCG
1 AGGCCATCAATGCACTGTCG
*
13950620 AGGCCATCAATGCACTGTTG
1 AGGCCATCAATGCACTGTCG
13950640 AGGCCATCAATGCA
1 AGGCCATCAATGCA
13950654 TTTTCTCAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (20 bp):
AGGCCATCAATGCACTGTCG
Found at i:13951916 original size:20 final size:20
Alignment explanation
Indices: 13951841--13951917 Score: 52
Period size: 20 Copynumber: 3.8 Consensus size: 20
13951831 TACATAATAT
13951841 TTATTATA-C-TATTTTATA
1 TTATTATATCATATTTTATA
* *
13951859 TT-TTATTATTATTATTTTACA
1 TTATTA-TATCA-TATTTTATA
* **
13951880 CTTTAATATATGTTATTTTATA
1 --TTATTATATCATATTTTATA
13951902 TTATTATATCATATTT
1 TTATTATATCATATTT
13951918 ATTATGTATT
Statistics
Matches: 43, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
17 3 0.07
18 4 0.09
20 13 0.30
21 8 0.19
22 8 0.19
23 5 0.12
24 2 0.05
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.62
Consensus pattern (20 bp):
TTATTATATCATATTTTATA
Found at i:13951924 original size:32 final size:32
Alignment explanation
Indices: 13951888--13951954 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 32
13951878 CACTTTAATA
13951888 TATGT-TATTT-TATATTATTATATCATATTTAT
1 TATGTATATTTGTATATTATTATAT-ATA-TTAT
* *
13951920 TATGTATTTTTGTATATTATTATCTATATTAT
1 TATGTATATTTGTATATTATTATATATATTAT
13951952 TAT
1 TAT
13951955 TTTGATAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 12 0.39
33 7 0.23
34 12 0.39
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.63
Consensus pattern (32 bp):
TATGTATATTTGTATATTATTATATATATTAT
Found at i:13963832 original size:44 final size:44
Alignment explanation
Indices: 13963769--13964007 Score: 374
Period size: 44 Copynumber: 5.4 Consensus size: 44
13963759 GATCCAAGAT
* * *
13963769 GATTTGGTGTCTCTATATTGGCAGAGAGCAGATCGAAGAT-AGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGA-CA
* *
13963813 GATTTGGCGTCTTTGTATTGTTAGAGAGCAGATCGAAGATGACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGACA
13963857 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGAT-AGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGA-CA
*
13963901 GATTTGGCGTCTCTGTATTATCAGAGAGCAGATCGAAGATGACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGACA
13963945 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGACA
* *
13963989 GATTTGGCATCTCTATATT
1 GATTTGGCGTCTCTGTATT
13964008 CGACAGGGAG
Statistics
Matches: 181, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
43 1 0.01
44 178 0.98
45 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGACA
Found at i:13964081 original size:132 final size:130
Alignment explanation
Indices: 13963790--13964161 Score: 369
Period size: 132 Copynumber: 2.8 Consensus size: 130
13963780 TCTATATTGG
* * *
13963790 CAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTGTTAGAGAGCAGATCGAAGATGA
1 CAGAGAGCAAATCGAAGAT---AGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGA
* * * * * * *
13963855 CAGATTTGGCGTCTCTGTATT-GTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAT
63 CAGATTTGGCATCTCTATATTCGACAGAGAGCAGATCAAAGACAACAGATTTGGCGTCTCCGTAT
13963919 TAT
128 TAT
*
13963922 CAGAGAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGA
1 CAGAGAGCAAATCGAAGAT---AGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGA
* * * *
13963987 CAGATTTGGCATCTCTATATTCGACAGGGAGTAGATCAAAGGCACAACAGATTTGTC-TTTCACG
63 CAGATTTGGCATCTCTATATTCGACAGAGAGCAGATCAAA-G-ACAACAGATTTGGCGTCTC-CG
13964051 TATT-T
125 TATTAT
* * * * * *
13964056 -ACGTTGAGGCAAATCTAAGAT-GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGA-AA
1 CA-G-AGA-GCAAATCGAAGATAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGA
* * * *
13964118 CAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGACA
63 CAGATTTGGCATCTCTATATTCGACAGAGAGCAGATCAAAGACA
13964162 TAGCAGATCT
Statistics
Matches: 205, Mismatches: 28, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
129 3 0.01
130 1 0.00
131 35 0.17
132 116 0.57
133 15 0.07
134 6 0.03
135 18 0.09
136 11 0.05
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (130 bp):
CAGAGAGCAAATCGAAGATAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGACAG
ATTTGGCATCTCTATATTCGACAGAGAGCAGATCAAAGACAACAGATTTGGCGTCTCCGTATTAT
Found at i:13964207 original size:131 final size:131
Alignment explanation
Indices: 13963945--13964207 Score: 280
Period size: 131 Copynumber: 2.0 Consensus size: 131
13963935 GAAGATGACA
* * * * * *
13963945 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTATATTCG
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGATAACAGATTTGGCATCTCCATATTCA
* * * ** * ** * *
13964010 ACAGGGAGTAGATCAAAGGCACAACAGATTTGTCTTTCACGTATTTACGTTGAGGCAAATCTAAG
66 ACAGGGAGCAGATCAAAGACACAACAGATCTAACCTTCAAATATTTACG-TGAAGCAAATCAAAG
13964075 AT
130 AT
13964077 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGA-AACAGATTTGGCATCTCCATATTCA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGATAACAGATTTGGCATCTCCATATTCA
* * * * *
13964141 AC-GGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCAAATGCTTATAC-TGAAGCAGATCAA
66 ACAGG-GAGCAGATCAAAGACACAACAGATCTAACCTTCAAAT-ATT-TACGTGAAGCAAATCAA
13964204 AGAT
128 AGAT
13964208 TTTTTTGGCA
Statistics
Matches: 107, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
130 2 0.02
131 64 0.60
132 38 0.36
133 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (131 bp):
GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGATAACAGATTTGGCATCTCCATATTCA
ACAGGGAGCAGATCAAAGACACAACAGATCTAACCTTCAAATATTTACGTGAAGCAAATCAAAGA
T
Found at i:13964896 original size:20 final size:20
Alignment explanation
Indices: 13964871--13964924 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
13964861 CCTCGAATCG
13964871 AGGCCATCAATGCACTGTCA
1 AGGCCATCAATGCACTGTCA
*
13964891 AGGCCATCAATGCACTGTCG
1 AGGCCATCAATGCACTGTCA
13964911 AGGCCATCAATGCA
1 AGGCCATCAATGCA
13964925 TTTTCTCAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.19
Consensus pattern (20 bp):
AGGCCATCAATGCACTGTCA
Found at i:13966146 original size:5 final size:5
Alignment explanation
Indices: 13966130--13966245 Score: 58
Period size: 5 Copynumber: 22.6 Consensus size: 5
13966120 ATTATTTACC
* * * * *
13966130 TATAT CTATAT TATAT TTTAT TACAT AATAT T-TAT TATAC TATTT TATAT
1 TATAT -TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
* * * * *
13966180 TTTAT TATTAT TATTT TACACT T-TAAT ATATGT TATTT TATAT TATTAT
1 TATAT TA-TAT TATAT TATA-T TAT-AT -TATAT TATAT TATAT TA-TAT
*
13966229 TATAT CATAT T-TAT TAT
1 TATAT TATAT TATAT TAT
13966246 GTATTTTTGT
Statistics
Matches: 81, Mismatches: 21, Indels: 17
0.68 0.18 0.14
Matches are distributed among these distances:
4 8 0.10
5 52 0.64
6 20 0.25
7 1 0.01
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:13966239 original size:23 final size:22
Alignment explanation
Indices: 13966160--13966240 Score: 71
Period size: 21 Copynumber: 3.8 Consensus size: 22
13966150 TTACATAATA
13966160 TTTATTATA-C-TATTTTATAT
1 TTTATTATATCATATTTTATAT
* *
13966180 TTTATTAT-T-ATTATTTTACAC
1 TTTATTATATCA-TATTTTATAT
* **
13966201 TTTAATATATGTTATTTTATAT
1 TTTATTATATCATATTTTATAT
13966223 TATTATTATATCATATTT
1 T-TTATTATATCATATTT
13966241 ATTATGTATT
Statistics
Matches: 46, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
20 8 0.17
21 15 0.33
22 10 0.22
23 13 0.28
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (22 bp):
TTTATTATATCATATTTTATAT
Found at i:13966247 original size:35 final size:37
Alignment explanation
Indices: 13966175--13966271 Score: 103
Period size: 35 Copynumber: 2.6 Consensus size: 37
13966165 TATACTATTT
*
13966175 TATATTTTATTATTATTATTTTA-CACTTTAATATATG
1 TATATTTTA-TATTATTATTATATCACTTTAATATATG
*
13966212 T-TATTTTATATTATTATTATATCA-TATTTAT-TATG
1 TATATTTTATATTATTATTATATCACT-TTAATATATG
*
13966247 TATTTTTGTATATTATTATCTATAT
1 TATATTT-TATATTATTAT-TATAT
13966272 TATTATTTTG
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
35 18 0.35
36 17 0.33
37 12 0.23
38 5 0.10
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (37 bp):
TATATTTTATATTATTATTATATCACTTTAATATATG
Found at i:13967771 original size:14 final size:13
Alignment explanation
Indices: 13967735--13967772 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
13967725 AAAATTAAAT
13967735 CTAAATAATTATC
1 CTAAATAATTATC
*
13967748 CTTAATAATTATC
1 CTAAATAATTATC
13967761 CTAATATAATTA
1 CTAA-ATAATTA
13967773 GAATTAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:13968392 original size:11 final size:11
Alignment explanation
Indices: 13968346--13968394 Score: 62
Period size: 11 Copynumber: 4.4 Consensus size: 11
13968336 TTATTAATAC
13968346 TTTTTTTTCTT
1 TTTTTTTTCTT
*
13968357 TTTCTTTTCCTT
1 TTT-TTTTTCTT
*
13968369 TTTTTCTTCTT
1 TTTTTTTTCTT
*
13968380 TTTTTTTTGTT
1 TTTTTTTTCTT
13968391 TTTT
1 TTTT
13968395 AGTTATTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
11 22 0.69
12 10 0.31
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.86
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:13969598 original size:12 final size:11
Alignment explanation
Indices: 13969581--13969693 Score: 61
Period size: 12 Copynumber: 9.3 Consensus size: 11
13969571 AAATATCCAA
13969581 AAATAAAGAAAT
1 AAATAAA-AAAT
13969593 AAATAATAAAAT
1 AAATAA-AAAAT
13969605 AAAATAAAATAAT
1 -AAATAAAA-AAT
13969618 AAATACTAATAAAAT
1 -AA-A-TAA-AAAAT
13969633 GAAATAAAATAAT
1 -AAATAAAA-AAT
13969646 AAATACTAATAAA-
1 AAATA--AA-AAAT
*
13969659 ATAATAAATAAT
1 A-AATAAAAAAT
*
13969671 AAATAATAAAT
1 AAATAAAAAAT
13969682 -AAT-AAAAAT
1 AAATAAAAAAT
13969691 AAA
1 AAA
13969694 GGTTGGGTTG
Statistics
Matches: 83, Mismatches: 5, Indels: 28
0.72 0.04 0.24
Matches are distributed among these distances:
9 5 0.06
10 5 0.06
11 10 0.12
12 22 0.27
13 20 0.24
14 10 0.12
15 9 0.11
16 2 0.02
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (11 bp):
AAATAAAAAAT
Found at i:13969602 original size:7 final size:7
Alignment explanation
Indices: 13969590--13969693 Score: 85
Period size: 7 Copynumber: 14.9 Consensus size: 7
13969580 AAAATAAAGA
13969590 AATAAAT
1 AATAAAT
13969597 AATAAAAT
1 AAT-AAAT
13969605 AAAATAAAAT
1 --AAT-AAAT
13969615 AATAAAT
1 AATAAAT
* *
13969622 ACTAATAA
1 AATAA-AT
13969630 AATGAAAT
1 AAT-AAAT
13969638 -A-AAAT
1 AATAAAT
13969643 AATAAAT
1 AATAAAT
*
13969650 ACT-AAT
1 AATAAAT
13969656 -A-AAAT
1 AATAAAT
13969661 AATAAAT
1 AATAAAT
13969668 AATAAAT
1 AATAAAT
13969675 AATAAAT
1 AATAAAT
13969682 AATAAA-
1 AATAAAT
13969688 AATAAA
1 AATAAA
13969694 GGTTGGGTTG
Statistics
Matches: 81, Mismatches: 6, Indels: 21
0.75 0.06 0.19
Matches are distributed among these distances:
5 7 0.09
6 11 0.14
7 42 0.52
8 11 0.14
9 2 0.02
10 8 0.10
ACGTcount: A:0.72, C:0.02, G:0.01, T:0.25
Consensus pattern (7 bp):
AATAAAT
Found at i:13969616 original size:18 final size:15
Alignment explanation
Indices: 13969590--13969688 Score: 92
Period size: 18 Copynumber: 5.9 Consensus size: 15
13969580 AAAATAAAGA
13969590 AATAAATAATAAAAT
1 AATAAATAATAAAAT
13969605 AAAATAAAATAATAAATACT
1 --AAT-AAATAATAAA-A-T
13969625 AATAAAATGAAATAAAAT
1 AAT-AAAT--AATAAAAT
13969643 AATAAATACTAATAAAAT
1 AAT-AA-A-TAATAAAAT
13969661 AATAAATAAT-AAAT
1 AATAAATAATAAAAT
13969675 AATAAATAATAAAA
1 AATAAATAATAAAA
13969689 ATAAAGGTTG
Statistics
Matches: 74, Mismatches: 0, Indels: 18
0.80 0.00 0.20
Matches are distributed among these distances:
14 14 0.19
15 7 0.09
16 1 0.01
17 5 0.07
18 36 0.49
19 3 0.04
20 8 0.11
ACGTcount: A:0.72, C:0.02, G:0.01, T:0.25
Consensus pattern (15 bp):
AATAAATAATAAAAT
Found at i:13969637 original size:28 final size:27
Alignment explanation
Indices: 13969596--13969693 Score: 130
Period size: 28 Copynumber: 3.6 Consensus size: 27
13969586 AAGAAATAAA
13969596 TAATAAAATAAAATAAAATAATAAATAC
1 TAATAAAAT-AAATAAAATAATAAATAC
13969624 TAATAAAATGAAATAAAATAATAAATAC
1 TAATAAAAT-AAATAAAATAATAAATAC
*
13969652 TAATAAAAT-AAT-AAATAATAAATAA
1 TAATAAAATAAATAAAATAATAAATAC
13969677 TAAATAATAA-AAATAAA
1 T-AATAA-AATAAATAAA
13969694 GGTTGGGTTG
Statistics
Matches: 64, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
25 13 0.20
26 8 0.12
27 5 0.08
28 38 0.59
ACGTcount: A:0.71, C:0.02, G:0.01, T:0.26
Consensus pattern (27 bp):
TAATAAAATAAATAAAATAATAAATAC
Found at i:13969655 original size:10 final size:8
Alignment explanation
Indices: 13969593--13969688 Score: 99
Period size: 10 Copynumber: 11.4 Consensus size: 8
13969583 ATAAAGAAAT
13969593 AAATAATA
1 AAATAATA
13969601 AAATAAAATA
1 AAAT--AATA
13969611 AAATAATA
1 AAATAATA
13969619 AATACTAATA
1 AA-A-TAATA
13969629 AAATGAAATA
1 AAAT--AATA
13969639 AAATAATA
1 AAATAATA
13969647 AATACTAATA
1 AA-A-TAATA
13969657 AAATAAT-
1 AAATAATA
13969664 AAATAAT-
1 AAATAATA
13969671 AAATAAT-
1 AAATAATA
13969678 AAATAATA
1 AAATAATA
13969686 AAA
1 AAA
13969689 ATAAAGGTTG
Statistics
Matches: 79, Mismatches: 0, Indels: 18
0.81 0.00 0.19
Matches are distributed among these distances:
7 21 0.27
8 24 0.30
9 4 0.05
10 30 0.38
ACGTcount: A:0.72, C:0.02, G:0.01, T:0.25
Consensus pattern (8 bp):
AAATAATA
Found at i:13969662 original size:5 final size:5
Alignment explanation
Indices: 13969597--13969644 Score: 51
Period size: 5 Copynumber: 9.0 Consensus size: 5
13969587 AGAAATAAAT
* *
13969597 AATAA AATAA AATAA AATAATA AATACT AATAA AATGA AATAA AATAA
1 AATAA AATAA AATAA AAT-A-A AATA-A AATAA AATAA AATAA AATAA
13969645 TAAATACTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
5 26 0.72
6 6 0.17
7 4 0.11
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (5 bp):
AATAA
Found at i:13969691 original size:53 final size:51
Alignment explanation
Indices: 13969579--13969694 Score: 130
Period size: 53 Copynumber: 2.2 Consensus size: 51
13969569 ATAAATATCC
*
13969579 AAAAATAAAGAAATAAATAATAAAATAAAATAAAATAATAAATACTAATAA
1 AAAAATAAAGAAATAAATAATAAAATAAAATAAAATAATAAATAATAATAA
*
13969630 AATGAAATAAA-ATAATAAATACT--AATAAAATAATAAATAATAAATAATAAATAA
1 AA--AAATAAAGA-AATAAATAATAAAATAAAAT-A-AAATAATAAATAAT-AATAA
13969684 TAAAAATAAAG
1 -AAAAATAAAG
13969695 GTTGGGTTGC
Statistics
Matches: 55, Mismatches: 2, Indels: 13
0.79 0.03 0.19
Matches are distributed among these distances:
51 10 0.18
52 2 0.04
53 36 0.65
54 5 0.09
55 2 0.04
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.23
Consensus pattern (51 bp):
AAAAATAAAGAAATAAATAATAAAATAAAATAAAATAATAAATAATAATAA
Found at i:13973395 original size:10 final size:10
Alignment explanation
Indices: 13973378--13973437 Score: 61
Period size: 10 Copynumber: 6.0 Consensus size: 10
13973368 TTAAATTCTA
13973378 AAAGATAAAT
1 AAAGATAAAT
*
13973388 ACAGATAAAT
1 AAAGATAAAT
**
13973398 AAAGATAGTT
1 AAAGATAAAT
13973408 AAAGAT-AAT
1 AAAGATAAAT
13973417 AAAAGATAAAT
1 -AAAGATAAAT
13973428 GAAA-ATAAAT
1 -AAAGATAAAT
13973438 CTTAAAATTA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
9 1 0.02
10 34 0.83
11 6 0.15
ACGTcount: A:0.65, C:0.02, G:0.12, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:13975798 original size:37 final size:37
Alignment explanation
Indices: 13975748--13975822 Score: 125
Period size: 37 Copynumber: 2.0 Consensus size: 37
13975738 GTGTGGATTC
13975748 GCAGAACCATGCAGACAAACCCACATCT-TGAAAACAT
1 GCAGAACCATGCAGACAAACCCACAT-TGTGAAAACAT
*
13975785 GCAGAACCATGCAGACGAACCCACATTGTGAAAACAT
1 GCAGAACCATGCAGACAAACCCACATTGTGAAAACAT
13975822 G
1 G
13975823 TGTTAGTCTT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 1 0.03
37 35 0.97
ACGTcount: A:0.41, C:0.28, G:0.17, T:0.13
Consensus pattern (37 bp):
GCAGAACCATGCAGACAAACCCACATTGTGAAAACAT
Found at i:13980073 original size:93 final size:93
Alignment explanation
Indices: 13979932--13980286 Score: 512
Period size: 93 Copynumber: 3.8 Consensus size: 93
13979922 AATGACCCAG
* * *
13979932 TACAAAATGAAGATGGTGCTTGTGGGTTAAATGCTTTGCCTATGATTTCCATCCCAAGAGATGTG
1 TACAAAATGAAGATAGTGCTTGTGGGGTAAATGCTTTGCCTATAATTTCCATCCCAAGAGATGTG
13979997 GAGAATGTTGGAGAAAAGACTGCCTTGA
66 GAGAATGTTGGAGAAAAGACTGCCTTGA
* *
13980025 TACAAAATGAAGGTAGTGCTTGTGGGGTAAATGCTTTGCCTATAATTTCCATCCCAAGAGATATG
1 TACAAAATGAAGATAGTGCTTGTGGGGTAAATGCTTTGCCTATAATTTCCATCCCAAGAGATGTG
* *
13980090 GAGAATGTTGCAGAAAAGACTGCCCTGA
66 GAGAATGTTGGAGAAAAGACTGCCTTGA
* * * *
13980118 TACAAAATGAAGAGAGTGCTTGTGGGGTAAATGCTTTGCCTATAACTTCCAACCCGAGAGATGTG
1 TACAAAATGAAGATAGTGCTTGTGGGGTAAATGCTTTGCCTATAATTTCCATCCCAAGAGATGTG
*
13980183 GAGAATGTTGGAGAAAAGATTGCCTTGA
66 GAGAATGTTGGAGAAAAGACTGCCTTGA
* * * ** * * * *
13980211 TACAAACTAAAGATAGTTCTTGTGCAGTAAATGCCTTGCCTATGATTTCCATCTCAAGAGATGTA
1 TACAAAATGAAGATAGTGCTTGTGGGGTAAATGCTTTGCCTATAATTTCCATCCCAAGAGATGTG
*
13980276 GAGAATTTTGG
66 GAGAATGTTGG
13980287 TGCACAATCA
Statistics
Matches: 232, Mismatches: 30, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 232 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (93 bp):
TACAAAATGAAGATAGTGCTTGTGGGGTAAATGCTTTGCCTATAATTTCCATCCCAAGAGATGTG
GAGAATGTTGGAGAAAAGACTGCCTTGA
Found at i:13980950 original size:23 final size:23
Alignment explanation
Indices: 13980920--13980964 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
13980910 ACAAGATATG
13980920 TAAAACTATTTTCTTTCCCAAAA
1 TAAAACTATTTTCTTTCCCAAAA
13980943 TAAAACTATTTTCTTTCCCAAA
1 TAAAACTATTTTCTTTCCCAAA
13980965 TTAGTGGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.40
Consensus pattern (23 bp):
TAAAACTATTTTCTTTCCCAAAA
Found at i:13986344 original size:2 final size:2
Alignment explanation
Indices: 13986339--13986365 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13986329 TTTTTTTTTT
13986339 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
13986366 CAGAGTGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:13991980 original size:3 final size:3
Alignment explanation
Indices: 13991965--13992281 Score: 88
Period size: 3 Copynumber: 102.7 Consensus size: 3
13991955 ATTCTTTACA
* * *
13991965 TAT TAT TAA TAT TAT TAC TAT TAT T-T TAGT T-C TAT TAT TAT CT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT -TAT
* * * *
13992009 TAT TAT TAC TAT TAG TAT TAT T-T TCAT TAT TAT TAT TTT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * * *
13992054 CA- TAT TAAT TAT TTT TA- AAG TAT TAT TAT TACT AAT GAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
* *
13992099 T-T CTAGT T-T TAT TAT TAT TAT TAA TAT TAAT GTAT GT-G TAT TAT
1 TAT -TA-T TAT TAT TAT TAT TAT TAT TAT T-AT -TAT -TAT TAT TAT
* * * *
13992143 ATAT GTAT GTAT ATAT ACATT TAT ATAT ATAG TAC TAT T-T TAAT TAC
1 -TAT -TAT -TAT -TAT -TA-T TAT -TAT -TAT TAT TAT TAT T-AT TAT
* * * * *
13992190 T-T TAT T-T TAA TAT TAC TAT TA- TAT TA- TATT TGT TTT TTT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
*
13992232 ATACT TCAT TAT TAT T-T CTAA TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 -TA-T T-AT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
13992280 TA
1 TA
13992282 GTCGTTATTT
Statistics
Matches: 236, Mismatches: 45, Indels: 66
0.68 0.13 0.19
Matches are distributed among these distances:
2 22 0.09
3 162 0.69
4 47 0.20
5 5 0.02
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:13992417 original size:38 final size:41
Alignment explanation
Indices: 13992329--13992417 Score: 96
Period size: 38 Copynumber: 2.2 Consensus size: 41
13992319 TTTTAATATT
* *
13992329 ATATTATATATATTTTCATATATGTTATGTATATAAGTTTTT
1 ATATTAT-TATATTTTCATATATGATATGTATATAAGTTTTA
* *
13992371 TTAATATTATATTTT-ATATAT-ATAT-TATATATA-TTTTA
1 ATATTATTATATTTTCATATATGATATGTATATA-AGTTTTA
13992409 ATATTATTA
1 ATATTATTA
13992418 GTTATATTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
38 17 0.43
39 4 0.10
40 6 0.15
41 8 0.20
42 5 0.12
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.58
Consensus pattern (41 bp):
ATATTATTATATTTTCATATATGATATGTATATAAGTTTTA
Found at i:13992429 original size:22 final size:21
Alignment explanation
Indices: 13992375--13992429 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
13992365 GTTTTTTTAA
*
13992375 TATTATATTTTATATATATAT
1 TATTATATTTTTTATATATAT
*
13992396 TA-TATATATTTTA-ATATTAT
1 TATTATATTTTTTATATA-TAT
13992416 TAGTTATATTTTTT
1 TA-TTATATTTTTT
13992430 TTACTATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 3 0.11
20 14 0.50
21 2 0.07
22 9 0.32
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTATATTTTTTATATATAT
Found at i:13992461 original size:61 final size:63
Alignment explanation
Indices: 13992324--13992447 Score: 159
Period size: 63 Copynumber: 2.0 Consensus size: 63
13992314 AAATGTTTTA
* * *
13992324 ATAT-TATATTATATATATTTTCATATATGTTATGTATATAAGTTTTTTTAATATTATATTTT
1 ATATATATATTATATATATTTTAATATATATTATGTATATAAGTTTTTTTAATATTATATTAT
* *
13992386 ATATATATATTATATATATTTTAATAT-TATTA-GT-TAT-ATTTTTTTTACTATTATATGTAT
1 ATATATATATTATATATATTTTAATATATATTATGTATATAAGTTTTTTTAATATTATAT-TAT
13992446 AT
1 AT
13992448 TTCCAATATT
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
59 17 0.31
60 7 0.13
61 2 0.04
62 8 0.15
63 21 0.38
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (63 bp):
ATATATATATTATATATATTTTAATATATATTATGTATATAAGTTTTTTTAATATTATATTAT
Found at i:13992952 original size:2 final size:2
Alignment explanation
Indices: 13992945--13992991 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
13992935 TACTACTATT
*
13992945 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13992986 TA TA TA
1 TA TA TA
13992992 CTCTTAATTA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:13997598 original size:97 final size:97
Alignment explanation
Indices: 13997432--13997629 Score: 378
Period size: 97 Copynumber: 2.0 Consensus size: 97
13997422 TTTTGCCTTT
13997432 GAAGTTCAAGGTGCCTGATTTTGAAAAGTATGATGGGACAAGGTGCCCAAAAGCACATCTCGTCA
1 GAAGTTCAAGGTGCCTGATTTTGAAAAGTATGATGGGACAAGGTGCCCAAAAGCACATCTCGTCA
*
13997497 TGTTCTGCCGGGAGATGACCGCCTATGTAAAC
66 TGTTCTGCCGGAAGATGACCGCCTATGTAAAC
13997529 GAAGTTCAAGGTGCCTGATTTTGAAAAGTATGATGGGACAAGGTGCCCAAAAGCACATCTCGTCA
1 GAAGTTCAAGGTGCCTGATTTTGAAAAGTATGATGGGACAAGGTGCCCAAAAGCACATCTCGTCA
*
13997594 TGTTCTGCCGGAAGATGACTGCCTATGTAAAC
66 TGTTCTGCCGGAAGATGACCGCCTATGTAAAC
13997626 GAAG
1 GAAG
13997630 ATAAGCTACT
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 99 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.24
Consensus pattern (97 bp):
GAAGTTCAAGGTGCCTGATTTTGAAAAGTATGATGGGACAAGGTGCCCAAAAGCACATCTCGTCA
TGTTCTGCCGGAAGATGACCGCCTATGTAAAC
Found at i:14005284 original size:71 final size:71
Alignment explanation
Indices: 14005163--14005301 Score: 179
Period size: 71 Copynumber: 2.0 Consensus size: 71
14005153 CTATTCTCAG
* * **
14005163 AAATCAACTCATATTGCGAGAGGTGAGTTGAGGCTTAAGACACGTTGAGGTAATTTCAATTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCAATTTATG
14005228 TTTCAA
66 TTTCAA
* ** * * * *
14005234 AAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAGTTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCAATTTATG
14005299 TTT
66 TTT
14005302 TAATTTATTT
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (71 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCAATTTATG
TTTCAA
Found at i:14005369 original size:85 final size:83
Alignment explanation
Indices: 14005220--14005598 Score: 323
Period size: 87 Copynumber: 4.6 Consensus size: 83
14005210 AGGTAATTTC
* * ** *
14005220 AATTTATGTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGT
1 AATTTATGTTTCAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGT
* * *
14005285 ATTTTCAGTTTTTGTTTT
66 AATTTCAATTTATGTTTT
* **
14005303 AATTTATTTTTCAAAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTATGTTTC--AAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAG
14005368 GTAATTTC------------
64 GTAATTTCAATTTATGTTTT
* ** * *
14005376 AATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGT
1 AATTTATGTTTCAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGT
* *
14005441 ATTTTCAATTTTTGTGTTT
66 AATTTCAATTTATGT-TTT
* * ** * *
14005460 CAATTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 -AATTTATGTTTC--AAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGA
* *
14005525 GGTATTTTCAATTTTTGTGTTT
63 GGTAATTTCAATTTATGT-TTT
* * *
14005547 CAATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 -AATTTATGTTTC--AAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCT
14005599 TTTAATTTTT
Statistics
Matches: 260, Mismatches: 18, Indels: 32
0.84 0.06 0.10
Matches are distributed among these distances:
71 53 0.20
73 11 0.04
83 11 0.04
85 62 0.24
87 123 0.47
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (83 bp):
AATTTATGTTTCAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGT
AATTTCAATTTATGTTTT
Found at i:14005421 original size:71 final size:72
Alignment explanation
Indices: 14005303--14005451 Score: 219
Period size: 71 Copynumber: 2.1 Consensus size: 72
14005293 TTTTTGTTTT
* *
14005303 AATTTATTTTTCAAAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTATGTTTC-AAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
14005368 GTAATTTC
65 GTAATTTC
* ** *
14005376 AATTTATGTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGG
1 AATTTATGTTTCAAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
*
14005440 TATTTTC
66 TAATTTC
14005447 AATTT
1 AATTT
14005452 TTGTGTTTCA
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
71 58 0.84
73 11 0.16
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (72 bp):
AATTTATGTTTCAAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTC
Found at i:14005447 original size:156 final size:158
Alignment explanation
Indices: 14005163--14005538 Score: 639
Period size: 156 Copynumber: 2.4 Consensus size: 158
14005153 CTATTCTCAG
* *
14005163 AAATCAACTCATATTGCGAGAGGTGAGTTGAGGCTTAAGACACGTTGAGGTAATTTCAATTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
* *
14005228 TTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAG
66 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAA
14005293 TTTTTGT-TTT-AATTTATTTTTCAAAA
131 TTTTTGTGTTTCAATTTATTTTTCAAAA
*
14005319 AAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
*
14005384 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA
66 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAA
14005449 TTTTTGTGTTTCAATTTATTTTTCAAAA
131 TTTTTGTGTTTCAATTTATTTTTCAAAA
** * * *
14005477 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
14005539 TTGTGTTTCA
Statistics
Matches: 206, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
156 131 0.64
157 3 0.01
158 72 0.35
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (158 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAA
TTTTTGTGTTTCAATTTATTTTTCAAAA
Found at i:14005516 original size:87 final size:87
Alignment explanation
Indices: 14005372--14005598 Score: 422
Period size: 87 Copynumber: 2.6 Consensus size: 87
14005362 GTTGAGGTAA
*
14005372 TTTCAATTTATGTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTCAATTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
14005435 TGAGGTATTTTCAATTTTTGTG
66 TGAGGTATTTTCAATTTTTGTG
14005457 TTTCAATTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTCAATTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
14005522 TGAGGTATTTTCAATTTTTGTG
66 TGAGGTATTTTCAATTTTTGTG
*
14005544 TTTCAATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTCAATTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
14005599 TTTAATTTTT
Statistics
Matches: 138, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
85 15 0.11
87 123 0.89
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (87 bp):
TTTCAATTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
TGAGGTATTTTCAATTTTTGTG
Found at i:14005744 original size:54 final size:54
Alignment explanation
Indices: 14005562--14005766 Score: 311
Period size: 54 Copynumber: 3.7 Consensus size: 54
14005552 TTTTTTTCAA
*
14005562 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTTGTTTCTTTAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTTG-TT-TTT---C
* *
14005621 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTCAATTTCTGTTTTCC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT-AATTTTTGTTTTTC
14005676 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTTGTTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTTGTTTTTC
* *
14005730 AAAAATCAATTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
14005767 CGGGCCACAT
Statistics
Matches: 138, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
54 47 0.34
55 40 0.29
58 2 0.01
59 42 0.30
60 7 0.05
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.37
Consensus pattern (54 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTTGTTTTTC
Found at i:14005796 original size:114 final size:112
Alignment explanation
Indices: 14005562--14005780 Score: 300
Period size: 114 Copynumber: 1.9 Consensus size: 112
14005552 TTTTTTTCAA
14005562 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTTGTTTCTTTAAAAAAAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTTGTTTCTTT--AAAAAAAT
* *** * *
14005627 CAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTCAATTTCTGTTTTCC
64 CAACTCATATTGCGAGAGGTGAGTTAAGCCTGGCCAATGTCGGTTTTCC
*
14005676 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTTG-TT-TTT-CAAAAATCA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTTGTTTCTTTAAAAAAATCA
*
14005738 ATTCATATTGCGAGAGGTGAGTTAAGCCTCGGGCCACATGTCG
66 ACTCATATTGCGAGAGGTGAGTTAAGCCT--GGCCA-ATGTCG
14005781 AGGTATTTTC
Statistics
Matches: 94, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
109 35 0.37
111 2 0.02
112 7 0.07
113 2 0.02
114 48 0.51
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.35
Consensus pattern (112 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTTGTTTCTTTAAAAAAATCA
ACTCATATTGCGAGAGGTGAGTTAAGCCTGGCCAATGTCGGTTTTCC
Found at i:14005877 original size:89 final size:89
Alignment explanation
Indices: 14005726--14006060 Score: 326
Period size: 89 Copynumber: 3.8 Consensus size: 89
14005716 AATTTTTGTT
* * * * * * *
14005726 TTTC-AAAA-ATCAATTCATATTGCGAGAGGTGAGTTAAGCCTCGGGCCACATGT-C-GAGGTAT
1 TTTCAAAAAGATCAACTCACATTGCGAGAAGTGAGTTGAGCCT-TGG-CTCATGTGCTGAGCTAT
14005787 TTTCAAAATCTACTTTTCAAATTAAG
64 TTTCAAAATCTACTTTTCAAATTAAG
* *
14005813 TTTCAAAAAGATCAACTCACATTGCGAGAAGTGAGTTGAGCCTTAGCTCATGTGCTAAGCTATTT
1 TTTCAAAAAGATCAACTCACATTGCGAGAAGTGAGTTGAGCCTTGGCTCATGTGCTGAGCTATTT
** ** * * **
14005878 TCAATTTCTGTTTTTTTAATTTCTG
66 TCAAAATCT-ACTTTTCAAATTAAG
* * * * * *
14005903 TTTTTC-AAAA-ATCAATTCATATTGTGAGAGGTGAGTTGAGCCTCTGGTCACATGT--TGAGGT
1 --TTTCAAAAAGATCAACTCACATTGCGAGAAGTGAGTTGAGCCT-TGG-CTCATGTGCTGAGCT
*
14005964 ATTTTCAAAATCTGCTTTTCAAATTAAG
62 ATTTTCAAAATCTACTTTTCAAATTAAG
*
14005992 TTTCAAAAAGATCAACTCACATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTT
1 TTTCAAAAAGATCAACTCACATTGCGAGAAGTGAGTTGAGCCTTGGCTCATGTGCTGAGCTATTT
14006057 TCAA
66 TCAA
14006061 TTTCTGTTTT
Statistics
Matches: 195, Mismatches: 40, Indels: 24
0.75 0.15 0.09
Matches are distributed among these distances:
87 19 0.10
88 13 0.07
89 94 0.48
90 53 0.27
91 6 0.03
92 10 0.05
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (89 bp):
TTTCAAAAAGATCAACTCACATTGCGAGAAGTGAGTTGAGCCTTGGCTCATGTGCTGAGCTATTT
TCAAAATCTACTTTTCAAATTAAG
Found at i:14005906 original size:14 final size:15
Alignment explanation
Indices: 14005875--14005907 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
14005865 TGCTAAGCTA
14005875 TTTTCAATTTCTGTT
1 TTTTCAATTTCTGTT
*
14005890 TTTTTAATTTCTGTT
1 TTTTCAATTTCTGTT
14005905 TTT
1 TTT
14005908 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.73
Consensus pattern (15 bp):
TTTTCAATTTCTGTT
Found at i:14006012 original size:179 final size:177
Alignment explanation
Indices: 14005712--14006119 Score: 640
Period size: 179 Copynumber: 2.3 Consensus size: 177
14005702 GAGTTGAGCC
* *
14005712 TTTTAATTTTTGTTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTAAGCCTCGGGCCACAT
1 TTTTAATTTCTGTTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACAT
14005777 GTCGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAGATCAACTCACATTGCGAGA
66 GTCGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAGATCAACTCACATTGCGAGA
*
14005842 AGTGAGTTGAGCCTTAGCTCATGTGCTAAGCTATTTTCAATTTCTGTTT
131 AGTGAGTTGAGCCTTAGCTCACGTGCTAAGCTATTTTCAATTTCTG--T
* * *
14005891 TTTTAATTTCTGTTTTTCAAAAATCAATTCATATTGTGAGAGGTGAGTTGAGCCTCTGGTCACAT
1 TTTTAATTTCTGTTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACAT
* *
14005956 GTTGAGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCAAAAAGATCAACTCACATTGCGAGA
66 GTCGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAGATCAACTCACATTGCGAGA
* *
14006021 AGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGT
131 AGTGAGTTGAGCCTTAGCTCACGTGCTAAGCTATTTTCAATTTCTGT
* * * **
14006068 TTTTAATGTCT-CTTTT-AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 TTTTAATTTCTGTTTTTCAAA-AATCAATTCATATTGCGAGAGGTGAGTTGAGC
14006120 TCAAGATCAC
Statistics
Matches: 212, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
175 3 0.01
176 32 0.15
177 11 0.05
179 166 0.78
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38
Consensus pattern (177 bp):
TTTTAATTTCTGTTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACAT
GTCGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAGATCAACTCACATTGCGAGA
AGTGAGTTGAGCCTTAGCTCACGTGCTAAGCTATTTTCAATTTCTGT
Found at i:14007830 original size:3 final size:3
Alignment explanation
Indices: 14007815--14007968 Score: 72
Period size: 3 Copynumber: 51.7 Consensus size: 3
14007805 ATTTTTTACA
* * *
14007815 TAT TAT TAA TAT TAT TAC TAT TAT T-T TAGT T-C TAT TAT TAT CT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT -TAT
* * * *
14007859 TAT TAT TAC TAT TAG TAT TAT T-T TCAT TAT TAT TAT TTT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * * *
14007904 CA- TAT TAAT TAT TTT TA- AAG TAT TAT TAT TACT AAT GAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
14007949 T-T CTAGT T-T TAT TAT TAT TA
1 TAT -TA-T TAT TAT TAT TAT TA
14007969 ATAATATTAA
Statistics
Matches: 113, Mismatches: 23, Indels: 30
0.68 0.14 0.18
Matches are distributed among these distances:
2 11 0.10
3 90 0.80
4 11 0.10
5 1 0.01
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:14008244 original size:10 final size:10
Alignment explanation
Indices: 14008217--14008258 Score: 54
Period size: 9 Copynumber: 4.5 Consensus size: 10
14008207 TTTTTTTTAA
*
14008217 TATTATATTT
1 TATTATATAT
14008227 TA-TATATAT
1 TATTATATAT
14008236 TATTATATAT
1 TATTATATAT
14008246 T-TTA-ATAT
1 TATTATATAT
14008254 TATTA
1 TATTA
14008259 GTTATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 5 0.17
9 14 0.48
10 10 0.34
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TATTATATAT
Found at i:14008277 original size:20 final size:18
Alignment explanation
Indices: 14008217--14008279 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 18
14008207 TTTTTTTTAA
14008217 TATTATATTTTATATATAT
1 TATTATATTTT-TATATAT
14008236 TATTATATATTTTAATATTAT
1 TATTATAT-TTTT-ATA-TAT
*
14008257 TAGTTATATTTTTTTACTAT
1 TA-TTATATTTTTATA-TAT
14008277 TAT
1 TAT
14008280 ATGTATATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
19 10 0.26
20 13 0.34
21 9 0.24
22 6 0.16
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TATTATATTTTTATATAT
Found at i:14008324 original size:43 final size:44
Alignment explanation
Indices: 14008216--14008326 Score: 106
Period size: 43 Copynumber: 2.5 Consensus size: 44
14008206 GTTTTTTTTA
**
14008216 ATATTATATTTTATATATATTAT-TATATATTTTAATATTATTAGTT
1 ATATT-TA-TTTATATATA-TATGTATATATTCCAATATTATTAGTT
*
14008262 ATATTTTTTTACTAT-TATATGTATAT-TTCCAATATTA-TA-TT
1 ATATTTATTTA-TATATATATGTATATATTCCAATATTATTAGTT
14008303 ATACTGTTATTTATATATATATGT
1 ATA-T-TTATTTATATATATATGT
14008327 GTGTATGTAT
Statistics
Matches: 56, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
41 5 0.09
42 6 0.11
43 25 0.45
44 11 0.20
45 4 0.07
46 5 0.09
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (44 bp):
ATATTTATTTATATATATATGTATATATTCCAATATTATTAGTT
Found at i:14021526 original size:18 final size:20
Alignment explanation
Indices: 14021489--14021529 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
14021479 ATATAATTTT
*
14021489 AAAATATCTATAATACATCA
1 AAAATATCTATAAAACATCA
14021509 AAAATAT-TA-AAAACATCA
1 AAAATATCTATAAAACATCA
14021527 AAA
1 AAA
14021530 TAAAAATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 2 0.10
20 7 0.35
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAATATCTATAAAACATCA
Found at i:14021654 original size:30 final size:30
Alignment explanation
Indices: 14021610--14021672 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
14021600 AACTTAACAG
*
14021610 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATATCTCTAAAATAATAACAAAATTAA
*
14021640 CAAATATCTTTAAAATAATAACAAAATTAA
1 CAAATATCTCTAAAATAATAACAAAATTAA
14021670 CAA
1 CAA
14021673 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.13, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATATCTCTAAAATAATAACAAAATTAA
Found at i:14021727 original size:22 final size:22
Alignment explanation
Indices: 14021702--14021749 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
14021692 TATCTAAACA
14021702 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* ** *
14021724 ATAATAGTAAAATGGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
14021746 ATAA
1 ATAA
14021750 AGAGAAAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:14021757 original size:22 final size:22
Alignment explanation
Indices: 14021710--14021759 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
14021700 CAATAACAAC
*
14021710 AAAATAGTAGCAACATAATAGT
1 AAAATAGTAGCAACATAATAGG
*
14021732 AAAATGGTAGCAACATAA-AGAG
1 AAAATAGTAGCAACATAATAG-G
14021754 AAAATA
1 AAAATA
14021760 ACAAGAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.58, C:0.08, G:0.16, T:0.18
Consensus pattern (22 bp):
AAAATAGTAGCAACATAATAGG
Found at i:14022786 original size:20 final size:21
Alignment explanation
Indices: 14022752--14022805 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
14022742 TGATGATATT
*
14022752 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
14022773 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
14022793 TTTTATTATTTTA
1 TTATATTATTTTA
14022806 TTATTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:14022809 original size:3 final size:3
Alignment explanation
Indices: 14022791--14022839 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
14022781 TTTAATGAGA
*
14022791 TAT T-T TAT TAT T-T TAT TAT TAT T-T CAT TAT TAT T-T TAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
14022836 TAT T
1 TAT T
14022840 TGGTATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:14022811 original size:11 final size:11
Alignment explanation
Indices: 14022795--14022833 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
14022785 ATGAGATATT
14022795 TTATTATTTTA
1 TTATTATTTTA
*
14022806 TTATTATTTCA
1 TTATTATTTTA
14022817 TTATTATTTTA
1 TTATTATTTTA
14022828 TTATTA
1 TTATTA
14022834 ATTATTTGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:14022819 original size:19 final size:19
Alignment explanation
Indices: 14022791--14022832 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
14022781 TTTAATGAGA
*
14022791 TATTTTATTATT-TTATTAT
1 TATTTCATTATTATT-TTAT
14022810 TATTTCATTATTATTTTAT
1 TATTTCATTATTATTTTAT
14022829 TATT
1 TATT
14022833 AATTATTTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTCATTATTATTTTAT
Found at i:14025027 original size:46 final size:46
Alignment explanation
Indices: 14024975--14025244 Score: 398
Period size: 46 Copynumber: 5.8 Consensus size: 46
14024965 GCTCTCTGAT
* *
14024975 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
14025021 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
14025067 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
*
14025113 ATGAAATGTGTAAGATCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
** ** * *
14025159 GGGGAAATGAATAAGACCATGGTTGAATGATACCATGGCAACATGAC
1 -ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
* * * *
14025206 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
14025245 TCATGTCGAA
Statistics
Matches: 206, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
45 1 0.00
46 166 0.81
47 39 0.19
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
Found at i:14025224 original size:139 final size:138
Alignment explanation
Indices: 14024975--14025244 Score: 407
Period size: 139 Copynumber: 1.9 Consensus size: 138
14024965 GCTCTCTGAT
* **
14024975 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGATGAAATGTGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAGGAAATGAATAAGACCAT
* * * *
14025040 GGTTGAAAGATACCATGGCAACGTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC
66 GGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGC
14025105 AACGTGAC
131 AACGTGAC
* * *
14025113 ATGAAATGTGTAAGATCATGGTTGAAAGATACCATGGCAACGTGACGGGGAAATGAATAAGACCA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-GAGGAAATGAATAAGACCA
* *
14025178 TGGTTGAATGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATG
65 TGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCATAGTTGAAAGACACCATG
14025242 GCA
129 GCA
14025245 TCATGTCGAA
Statistics
Matches: 118, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
138 44 0.37
139 74 0.63
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (138 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAGGAAATGAATAAGACCAT
GGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGC
AACGTGAC
Found at i:14025972 original size:23 final size:20
Alignment explanation
Indices: 14025958--14025994 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
14025948 AATACATTTA
14025958 AAAACATAAAACAAAT-ATT
1 AAAACATAAAACAAATAATT
*
14025977 AAAACAAAAAACAAATAA
1 AAAACATAAAACAAATAA
14025995 AAAATGAGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 15 0.94
20 1 0.06
ACGTcount: A:0.76, C:0.11, G:0.00, T:0.14
Consensus pattern (20 bp):
AAAACATAAAACAAATAATT
Found at i:14026485 original size:17 final size:18
Alignment explanation
Indices: 14026441--14026487 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 18
14026431 TTTTATATTA
* *
14026441 AATTTAATATTTTAAATC
1 AATTTTATATTTTTAATC
14026459 -ATTTTA-ATTTTTAA-C
1 AATTTTATATTTTTAATC
14026474 AATTTTATATTTTT
1 AATTTTATATTTTT
14026488 TATGGGAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
15 1 0.04
16 13 0.52
17 11 0.44
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (18 bp):
AATTTTATATTTTTAATC
Found at i:14027128 original size:18 final size:19
Alignment explanation
Indices: 14027089--14027128 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
14027079 AAAATTACGT
* *
14027089 TTTAACTCTAATTAAAATA
1 TTTAACTCTAATAAAAAAA
14027108 TTTAACTCTAA-AAAAAAA
1 TTTAACTCTAATAAAAAAA
14027126 TTT
1 TTT
14027129 CAGACGTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (19 bp):
TTTAACTCTAATAAAAAAA
Found at i:14028332 original size:5 final size:5
Alignment explanation
Indices: 14028322--14028347 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14028312 TTATTTTAAG
14028322 TAATT TAATT TAATT TAATT TAATT T
1 TAATT TAATT TAATT TAATT TAATT T
14028348 GGAGAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TAATT
Found at i:14031667 original size:52 final size:52
Alignment explanation
Indices: 14031524--14031721 Score: 209
Period size: 52 Copynumber: 3.9 Consensus size: 52
14031514 ACATATCACA
* * * * *
14031524 CACCGAAGCCATAGTCCTGCTATGGTCTTACAC-GGATCAC--ATCACA-TG
1 CACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAACACTTATCACATTG
* *
14031572 --CCGATGCCATA-TCCAGATATGGTCTTATAC-GGAATCACATTATCACATCT-
1 CACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAA-CAC-TTATCACAT-TG
14031622 CACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAACACTTATCACATTG
1 CACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAACACTTATCACATTG
**
14031674 CACCGATGCCATAGCCCAGCTATGGTCTTCA-ACGGGCGCACTTATCAC
1 CACCGATGCCATAGCCCAGCTATGGTCTT-ATACGGGAACACTTATCAC
14031722 GTCTTTTCCG
Statistics
Matches: 129, Mismatches: 9, Indels: 20
0.82 0.06 0.13
Matches are distributed among these distances:
45 19 0.15
46 13 0.10
49 6 0.05
51 2 0.02
52 64 0.50
53 21 0.16
54 4 0.03
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (52 bp):
CACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAACACTTATCACATTG
Found at i:14033949 original size:15 final size:15
Alignment explanation
Indices: 14033889--14033934 Score: 74
Period size: 15 Copynumber: 2.9 Consensus size: 15
14033879 TATATAATAG
14033889 AAATAGAAATATAAT
1 AAATAGAAATATAAT
14033904 AAATAGAAATATAAT
1 AAATAGAAATATAAT
14033919 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
14033935 ATAGATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 17 0.59
16 1 0.03
17 11 0.38
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:14033950 original size:32 final size:32
Alignment explanation
Indices: 14033892--14033954 Score: 89
Period size: 29 Copynumber: 2.1 Consensus size: 32
14033882 ATAATAGAAA
14033892 TAGAAATATAATAAATAGAAATATAATAATAG
1 TAGAAATATAATAAATAGAAATATAATAATAG
14033924 TAG-AA-AT-ATAAATAGATAA-ATAATAATAG
1 TAGAAATATAATAAATAGA-AATATAATAATAG
14033953 TA
1 TA
14033955 TTAGAATAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
29 21 0.70
30 4 0.13
31 2 0.07
32 3 0.10
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.29
Consensus pattern (32 bp):
TAGAAATATAATAAATAGAAATATAATAATAG
Found at i:14033960 original size:32 final size:32
Alignment explanation
Indices: 14033880--14033960 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 32
14033870 TAATCTTAGT
*
14033880 ATATAATAGAAATAGAAATATAATAAATAGAA
1 ATATAATAGTAATAGAAATATAATAAATAGAA
* * *
14033912 ATATAATAATAGTAGAAATATAAATAGAT--AA
1 ATATAATAGTAATAGAAATAT-AATAAATAGAA
*
14033943 ATAATAATAGTATTAGAA
1 AT-ATAATAGTAATAGAA
14033961 TAACAAAATA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
31 4 0.10
32 31 0.76
33 6 0.15
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (32 bp):
ATATAATAGTAATAGAAATATAATAAATAGAA
Found at i:14035030 original size:45 final size:44
Alignment explanation
Indices: 14034932--14035123 Score: 176
Period size: 45 Copynumber: 4.3 Consensus size: 44
14034922 CCAATGTAAT
* * * * *
14034932 TTCAGGGA-A-AAGAGATTTGTAGCTTCAATCTACTCCGCTGAAAC
1 TTCAGGGAGATAAGA-A-TTGTATCTTCAACCTGCTCCACTGCAAC
* *
14034976 TTTAAGGAGATAAGAATTGGTAAT-TTCAACCTGCTCCACTGCAAC
1 TTCAGGGAGATAAGAATT-GT-ATCTTCAACCTGCTCCACTGCAAC
* * **
14035021 TTCAGGGAGATAA-AGTTTGTGGTCTTCAGTCTGCTCCACTGCAAC
1 TTCAGGGAGATAAGA-ATTGT-ATCTTCAACCTGCTCCACTGCAAC
* * *
14035066 TACAGGGAGATAAGACTTGTATCTTGAACCTGCTCCACTGCAAC
1 TTCAGGGAGATAAGAATTGTATCTTCAACCTGCTCCACTGCAAC
14035110 TTCAGGGAGATAAG
1 TTCAGGGAGATAAG
14035124 GCTAGTGGCT
Statistics
Matches: 120, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
44 45 0.38
45 69 0.57
46 6 0.05
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (44 bp):
TTCAGGGAGATAAGAATTGTATCTTCAACCTGCTCCACTGCAAC
Found at i:14035096 original size:89 final size:89
Alignment explanation
Indices: 14034981--14035172 Score: 246
Period size: 89 Copynumber: 2.2 Consensus size: 89
14034971 GAAACTTTAA
* *
14034981 GGAGATAAGAATTGGTAATTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAAGTTTGTGGTCT
1 GGAGATAAGAATTGGTAATTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAAGCTAGTGG-CT
* *
14035046 TCAGTCTGCTCCACTGCAACTACAG
65 TAAATCTGCTCCACTGCAACTACAG
* * *
14035071 GGAGATAAGACTT-GT-ATCTTGAACCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTGGCT
1 GGAGATAAGAATTGGTAAT-TTCAACCTGCTCCACTGCAACTTCAGGGAGATAAAGCTAGTGGCT
* ** *
14035134 TAAATCTGTTCCACTGCCGCTACAT
65 TAAATCTGCTCCACTGCAACTACAG
14035159 GGAGATAAG-ATTGG
1 GGAGATAAGAATTGG
14035173 CTGTCTTTGA
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
87 2 0.02
88 33 0.38
89 41 0.47
90 12 0.14
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (89 bp):
GGAGATAAGAATTGGTAATTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAAGCTAGTGGCTT
AAATCTGCTCCACTGCAACTACAG
Found at i:14035147 original size:44 final size:44
Alignment explanation
Indices: 14035006--14035150 Score: 173
Period size: 44 Copynumber: 3.3 Consensus size: 44
14034996 TAATTTCAAC
* * * *
14035006 CTGCTCCACTGCAACTTCAGGGAGATAAAGTTTGTGGTCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTGG-CTTAAAT
* * ** * *
14035051 CTGCTCCACTGCAACTACAGGGAGATAAGACTTGTATCTTGAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTGGCTTAAAT
*
14035095 CTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTGGCTTAAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTGGCTTAAAT
*
14035139 CTGTTCCACTGC
1 CTGCTCCACTGC
14035151 CGCTACATGG
Statistics
Matches: 83, Mismatches: 17, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
44 52 0.63
45 31 0.37
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTGGCTTAAAT
Found at i:14035207 original size:44 final size:44
Alignment explanation
Indices: 14035159--14035304 Score: 118
Period size: 44 Copynumber: 3.2 Consensus size: 44
14035149 GCCGCTACAT
14035159 GGAGATAAGATTGGCTGTCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAGATTGGCTGTCTTTGATCTGCTCCACTACTGCTTAG
* * ** * *
14035203 GGAGATAAGA-TGGTCTGTCATTTTTAGCCTATTTCC-CTATTGTTTAG
1 GGAGATAAGATTGG-CTGTC--TTTGA-TCT-GCTCCACTACTGCTTAG
* * * * *
14035250 GGGGATAAGGCTT-ACCGTCTTCGATCTGCTCCACTACTGCTTAG
1 GGAGATAA-GATTGGCTGTCTTTGATCTGCTCCACTACTGCTTAG
14035294 GGAGATAAGAT
1 GGAGATAAGAT
14035305 ATGTAATTTT
Statistics
Matches: 75, Mismatches: 19, Indels: 17
0.68 0.17 0.15
Matches are distributed among these distances:
43 8 0.11
44 33 0.44
45 3 0.04
46 4 0.05
47 22 0.29
48 4 0.05
49 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (44 bp):
GGAGATAAGATTGGCTGTCTTTGATCTGCTCCACTACTGCTTAG
Found at i:14035270 original size:91 final size:91
Alignment explanation
Indices: 14035175--14035840 Score: 794
Period size: 88 Copynumber: 7.4 Consensus size: 91
14035165 AAGATTGGCT
* * *
14035175 GTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATGGTCTGTCATTTTTAGCCTATTTCCC
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATGGTCTGTCATTTTCAGCCTGTTTCCC
* * *
14035240 TATTGTTTAGGGGGATAAGGCTTACC
66 TACTGCTTAGGGGGATAAGGCTCACC
* * *
14035266 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA---TATGTAATTTTCAGCCCGTTTCCC
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATGGTCTGTCATTTTCAGCCTGTTTCCC
* * *
14035328 TACTGCTTAGGTGGATAAGGCTTACT
66 TACTGCTTAGGGGGATAAGGCTCACC
* * * * * * *
14035354 GTCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGGTAGTTTGTCATTTTCAGCCTGTTTCCC
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATGGTCTGTCATTTTCAGCCTGTTTCCC
*
14035419 TACTGCTTA-TGGGATAAGGCTCACC
66 TACTGCTTAGGGGGATAAGGCTCACC
* * * *
14035444 GTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGGTGGTCTATCATTTTCAGCCTATTTCCC
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATGGTCTGTCATTTTCAGCCTGTTTCCC
*
14035509 TACTGCTTAGGGGGATAAGGCTCACT
66 TACTGCTTAGGGGGATAAGGCTCACC
* * * * * * *
14035535 GTCTTTGATTTGTTCCACTACTGCTTAGGGAGATACGA---TATGTAATTTTTAGCCTGTTTCCC
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATGGTCTGTCATTTTCAGCCTGTTTCCC
14035597 TACTGCTTAGGGGGATAAGGCTCACC
66 TACTGCTTAGGGGGATAAGGCTCACC
* * * * * *
14035623 ATCTTCAACCTACTCCACTACTGGTTAGGGAGAT-AG--GGTCTGTAATTTTCAGCCTGTTTCCC
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATGGTCTGTCATTTTCAGCCTGTTTCCC
*
14035685 TACTGCTTAGGGGAATAAGGCTCACC
66 TACTGCTTAGGGGGATAAGGCTCACC
* * * * * *
14035711 GTCTTCAACCTACTCCACAACTGCTTAGGGAGATAGGGTGGTCTGTCATTTTCAGCCTGTTTCCC
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATGGTCTGTCATTTTCAGCCTGTTTCCC
* *
14035776 TACTACTTAGGAGGATAAGGCTCACC
66 TACTGCTTAGGGGGATAAGGCTCACC
* ** * *
14035802 GTTTTTTATCTGCTCCACTACTGCTTAAGGAGGTAAGAT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
14035841 CTGTGAATTT
Statistics
Matches: 491, Mismatches: 75, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
87 1 0.00
88 222 0.45
89 1 0.00
90 77 0.16
91 190 0.39
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (91 bp):
GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATGGTCTGTCATTTTCAGCCTGTTTCCC
TACTGCTTAGGGGGATAAGGCTCACC
Found at i:14035507 original size:269 final size:267
Alignment explanation
Indices: 14035175--14035850 Score: 985
Period size: 269 Copynumber: 2.5 Consensus size: 267
14035165 AAGATTGGCT
* * *
14035175 GTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATGGTCTGTCATTTTTAGCCTATTTCCC
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGGTGGTCTGTCATTTTCAGCCTATTTCCC
* * * *
14035240 TATTGTTTAGGGGGATAAGGCTTACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
66 TACTGCTTAGGGGGATAAGGCTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
* * **
14035305 ATGTAATTTTCAGCCCGTTTCCCTACTGCTTAGGTGGATAAGGCTTACTGTCTTCAACCTACTCC
131 ATGTAATTTTCAGCCCGTTTCCCTACTGCTTAGGGGGATAAGGCTCACCATCTTCAACCTACTCC
* * *
14035370 ACTACTGCTTAGGGAGATAGGGTAGTTTGTCATTTTCAGCCTGTTTCCCTACTGCTTATGGG-AT
196 ACTACTGCTTAGGGAGATA-GG--GTCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGAAT
14035434 AAGGCTCACC
258 AAGGCTCACC
* *
14035444 GTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGGTGGTCTATCATTTTCAGCCTATTTCCC
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGGTGGTCTGTCATTTTCAGCCTATTTCCC
* * * *
14035509 TACTGCTTAGGGGGATAAGGCTCACTGTCTTTGATTTGTTCCACTACTGCTTAGGGAGATACGAT
66 TACTGCTTAGGGGGATAAGGCTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
* *
14035574 ATGTAATTTTTAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGCTCACCATCTTCAACCTACTCC
131 ATGTAATTTTCAGCCCGTTTCCCTACTGCTTAGGGGGATAAGGCTCACCATCTTCAACCTACTCC
*
14035639 ACTACTGGTTAGGGAGATAGGGTCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGAATAAG
196 ACTACTGCTTAGGGAGATAGGGTCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGAATAAG
14035704 GCTCACC
261 GCTCACC
* * * * * *
14035711 GTCTTCAACCTACTCCACAACTGCTTAGGGAGATAGGGTGGTCTGTCATTTTCAGCCTGTTTCCC
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGGTGGTCTGTCATTTTCAGCCTATTTCCC
* * * * * *
14035776 TACTACTTAGGAGGATAAGGCTCACCGTTTTTTATCTGCTCCACTACTGCTTAAGGAGGTAAGAT
66 TACTGCTTAGGGGGATAAGGCTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
*
14035841 CTGTGAATTT
131 ATGT-AATTT
14035851 ACTGGTATTA
Statistics
Matches: 363, Mismatches: 42, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
266 35 0.10
267 127 0.35
268 7 0.02
269 194 0.53
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (267 bp):
GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGGTGGTCTGTCATTTTCAGCCTATTTCCC
TACTGCTTAGGGGGATAAGGCTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
ATGTAATTTTCAGCCCGTTTCCCTACTGCTTAGGGGGATAAGGCTCACCATCTTCAACCTACTCC
ACTACTGCTTAGGGAGATAGGGTCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGAATAAG
GCTCACC
Found at i:14035644 original size:44 final size:44
Alignment explanation
Indices: 14035323--14035745 Score: 168
Period size: 44 Copynumber: 9.5 Consensus size: 44
14035313 TTCAGCCCGT
* **
14035323 TTCC-CTACTGCTTAGGTG-GATAAGGCTTACTGTCTTCAACCTA
1 TTCCACTACTGCTTAGG-GAGATAAGGCTCACCATCTTCAACCTA
* * * *** * * *
14035366 CTCCACTACTGCTTAGGGAGATAGGGTAGTTTGTCATTTTCAGCCTGT
1 TTCCACTACTGCTTAGGGAGATA-AG--GCTCACCATCTTCAACCT-A
* * * * *
14035414 TTCC-CTACTGCTTATGG-GATAAGGCTCACCGTCTTCGATCTG
1 TTCCACTACTGCTTAGGGAGATAAGGCTCACCATCTTCAACCTA
* * * * * *
14035456 CTCCACTACTACTTAGGGAGATAAGGTGGTCTATCATTTTCAGCCTA
1 TTCCACTACTGCTTAGGGAGATAA-G-GCTC-ACCATCTTCAACCTA
* ** ** ** *
14035503 TTTCC-CTACTGCTTAGGGGGATAAGGCTCACTGTCTTTGATTTG
1 -TTCCACTACTGCTTAGGGAGATAAGGCTCACCATCTTCAACCTA
* * ** * * * *
14035547 TTCCACTACTGCTTAGGGAGAT-ACGAT-ATGTAATTTTTAGCCTGT
1 TTCCACTACTGCTTAGGGAGATAAGGCTCA--CCATCTTCAACCT-A
*
14035592 TTCC-CTACTGCTTAGGGGGATAAGGCTCACCATCTTCAACCTA
1 TTCCACTACTGCTTAGGGAGATAAGGCTCACCATCTTCAACCTA
* * * * * * *
14035635 CTCCACTACTGGTTAGGGAGATAGGGTCTGTA--ATTTTCAGCCTGT
1 TTCCACTACTGCTTAGGGAGATAAGG-CT-CACCATCTTCAACCT-A
*
14035680 TTCC-CTACTGCTTAGGG-GAATAAGGCTCACCGTCTTCAACCTA
1 TTCCACTACTGCTTAGGGAG-ATAAGGCTCACCATCTTCAACCTA
* *
14035723 CTCCACAACTGCTTAGGGAGATA
1 TTCCACTACTGCTTAGGGAGATA
14035746 GGGTGGTCTG
Statistics
Matches: 266, Mismatches: 87, Indels: 53
0.66 0.21 0.13
Matches are distributed among these distances:
42 5 0.02
43 40 0.15
44 138 0.52
45 19 0.07
46 10 0.04
47 48 0.18
48 6 0.02
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (44 bp):
TTCCACTACTGCTTAGGGAGATAAGGCTCACCATCTTCAACCTA
Done.