Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 59 of 444
Found at i:14221468 original size:53 final size:54
Alignment explanation
Indices: 14221364--14221479 Score: 137
Period size: 53 Copynumber: 2.1 Consensus size: 54
14221354 AAAAGTCATA
* * *
14221364 TAAACCCCTAAACCCTAAAAAAATCATGAACACTAATCTATAACCCTTAAAATAC
1 TAAACCCCTAAACCCT-AAAAAACCATAAACACTAATCTATAACCCTTAAAACAC
* * * *
14221419 TAAACCCCTAAACCCT-AAAAACCCTAAACATTAATCTATAA-CTTCTAAAACCC
1 TAAACCCCTAAACCCTAAAAAACCATAAACACTAATCTATAACCCT-TAAAACAC
14221472 TAAACCCC
1 TAAACCCC
14221480 AAAAAACATC
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
52 2 0.04
53 35 0.66
55 16 0.30
ACGTcount: A:0.47, C:0.31, G:0.01, T:0.22
Consensus pattern (54 bp):
TAAACCCCTAAACCCTAAAAAACCATAAACACTAATCTATAACCCTTAAAACAC
Found at i:14222992 original size:26 final size:24
Alignment explanation
Indices: 14222954--14223006 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 24
14222944 AAGTAAATAC
14222954 TTTTTTTTAAAAACA-ATTATATTT
1 TTTTTTTTAAAAA-ATATTATATTT
14222978 TTTTATTTTAAAAAAATATTATATTT
1 TTTT-TTTT-AAAAAATATTATATTT
14223004 TTT
1 TTT
14223007 AAGATTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 4 0.15
25 5 0.19
26 17 0.65
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (24 bp):
TTTTTTTTAAAAAATATTATATTT
Found at i:14223776 original size:76 final size:76
Alignment explanation
Indices: 14223618--14223788 Score: 200
Period size: 76 Copynumber: 2.2 Consensus size: 76
14223608 AACATAAATT
*
14223618 AAAAACAGAAACTGAAAATAGCTCAACACGTGAGCCAAAGCTTAACTCACCTCTCGCAATATGAA
1 AAAAACAGAAACTGAAAATAGCTCAACACGTGAGCCAAAGCTCAACTCACCTCTCGCAATATGAA
14223683 TTGATTTAAAG
66 TTGATTTAAAG
* * * * * * * * * *
14223694 ACAAACAGAAATTGAAAGTGGTTCAGCATGTGAGCCAAGGCTCAACTCACCTTTCGCAATATGAG
1 AAAAACAGAAACTGAAAATAGCTCAACACGTGAGCCAAAGCTCAACTCACCTCTCGCAATATGAA
**
14223759 TTGATTCT-TTG
66 TTGATT-TAAAG
*
14223770 AAAAACATAAACTGAAAAT
1 AAAAACAGAAACTGAAAAT
14223789 CGAAATTAAA
Statistics
Matches: 77, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
76 76 0.99
77 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.23
Consensus pattern (76 bp):
AAAAACAGAAACTGAAAATAGCTCAACACGTGAGCCAAAGCTCAACTCACCTCTCGCAATATGAA
TTGATTTAAAG
Found at i:14223849 original size:87 final size:87
Alignment explanation
Indices: 14223731--14224224 Score: 370
Period size: 86 Copynumber: 5.5 Consensus size: 87
14223721 ATGTGAGCCA
* *
14223731 AGGCTCAACTCACCTTTCGCAATATGAGTTGATTCTTTGAAAAACATAAACTGAAAATC-GAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTGAAAAACATAAACTGAAAAGCAGAAAT
* *
14223795 TAAAAATACCTCAGCGTGTCCTG
65 TAAAAATACCTCAGCGTGCCCCG
* * *
14223818 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAGCATGAATTGAAAAGCAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-CATAAACTGAAAAGCAGAAAT
* *
14223883 TGAAAATACTTCAGCGTGCCCCG
65 TAAAAATACCTCAGCGTGCCCCG
* * * * * *
14223906 AGGCTCAACTCACCTCTCACAATGTGAGTTGATTTTGGAAAAA-ATAAAAAT-AAAAACAGAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAT-AAACTGAAAAGCAGAAAT
* ** * *** * *
14223969 TGAACAACAGAATTTGAAAATACCTCGG
65 T-AA-AA-A-TACCTCAGCGTGCC-CCG
* * *
14223997 CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-AAATTGGA
1 -A-G-G-CTC-A-ACTC-----ACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAACT-GA
* * * * *
14224061 AAA-CAGAAATTGAAATTACCTCAACGTGTCCTG
54 AAAGCAGAAATTAAAAATACCTCAGCGTGCCCCG
** * * * * *
14224094 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTCTGAGAAATATAAATTGAAGA-CAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAACTGAAAAGCAGAAATT
* * *
14224158 GAAAATACCTCAGCGTGTCCTG
66 AAAAATACCTCAGCGTGCCCCG
* *
14224180 AGGCCCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
14224225 GAAATTAAAA
Statistics
Matches: 325, Mismatches: 59, Indels: 47
0.75 0.14 0.11
Matches are distributed among these distances:
86 122 0.38
87 54 0.17
88 65 0.20
89 1 0.00
90 7 0.02
91 5 0.02
92 2 0.01
93 3 0.01
94 2 0.01
95 3 0.01
96 2 0.01
97 5 0.02
98 6 0.02
100 2 0.01
101 5 0.02
102 36 0.11
103 5 0.02
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAACTGAAAAGCAGAAATT
AAAAATACCTCAGCGTGCCCCG
Found at i:14223919 original size:88 final size:86
Alignment explanation
Indices: 14223731--14223972 Score: 299
Period size: 88 Copynumber: 2.8 Consensus size: 86
14223721 ATGTGAGCCA
* *
14223731 AGGCTCAACTCACCTTTCGCAATATGAGTTGATTCTTTGAAAAACATAAACTGAAAATC-GAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTGAAAAACATAAATTGAAAA-CAGAAAT
*
14223795 TAAAAATACCTCAGCGTGTCCTG
64 TGAAAATACCTCAGCGTGTCCTG
* *
14223818 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAGCATGAATTGAAAAGCAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-CATAAATTGAAAA-CAGAAAT
* * *
14223883 TGAAAATACTTCAGCGTGCCCCG
64 TGAAAATACCTCAGCGTGTCCTG
* * * * * *
14223906 AGGCTCAACTCACCTCTCACAATGTGAGTTGATTTTGGAAAAA-ATAAAAATAAAAACAGAATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAT-AAATTGAAAACAGAAATT
14223970 GAA
65 GAA
14223973 CAACAGAATT
Statistics
Matches: 135, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
86 20 0.15
87 52 0.39
88 63 0.47
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.26
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAACAGAAATTG
AAAATACCTCAGCGTGTCCTG
Found at i:14223977 original size:14 final size:14
Alignment explanation
Indices: 14223960--14223986 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14223950 TAAAAATAAA
14223960 AACAGAATTTGAAC
1 AACAGAATTTGAAC
14223974 AACAGAATTTGAA
1 AACAGAATTTGAA
14223987 AATACCTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.11, G:0.15, T:0.22
Consensus pattern (14 bp):
AACAGAATTTGAAC
Found at i:14223986 original size:100 final size:102
Alignment explanation
Indices: 14223855--14224050 Score: 274
Period size: 102 Copynumber: 1.9 Consensus size: 102
14223845 GTTGATTTTT
* *
14223855 TAAAAAGCATGAATTGAAAAGCAGAAATTGAAAATACTTCAGC-GTGCCCCGAGGCTCAACTCAC
1 TAAAAAGCATGAATTGAAAAGCAGAAATTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCAC
*
14223919 CTCTCACAATGTGAGTTGATTTTGGAAAAAATAAAAA
66 CTCTCACAATATGAGTTGATTTTGGAAAAAATAAAAA
* *
14223956 TAAAAA-CA-GAATTTGAACAA-CAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACT
1 TAAAAAGCATGAA-TTGAA-AAGCAGAAATTGAAAATACCTCAGCA-GTGACCCGAGGCTCAACT
* *
14224018 CACCTCTCGCAATATGAGTTGATTTTTGAAAAA
63 CACCTCTCACAATATGAGTTGATTTTGGAAAAA
14224051 CAAAATTGGA
Statistics
Matches: 84, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
99 3 0.04
100 26 0.31
101 8 0.10
102 47 0.56
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (102 bp):
TAAAAAGCATGAATTGAAAAGCAGAAATTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCAC
CTCTCACAATATGAGTTGATTTTGGAAAAAATAAAAA
Found at i:14224064 original size:102 final size:100
Alignment explanation
Indices: 14223866--14224075 Score: 271
Period size: 102 Copynumber: 2.1 Consensus size: 100
14223856 AAAAAGCATG
* * *
14223866 AATTGAAAAGCAGAAATTGAAAATACTTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATGT
1 AATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCACAATAT
*
14223931 GAGTTGATTTTGGAAAAAATAAAAATAAAAACAGA
66 GAGTTGATTTTGGAAAAAACAAAAATAAAAACAGA
* * * *
14223966 ATTTGAACAA-CAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAA
1 AATTGAA-AAGCAGAAATTGAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCACAA
* * *
14224030 TATGAGTTGATTTTTG-AAAAACAAAATTGGAAAACAGA
63 TATGAGTTGATTTTGGAAAAAACAAAAAT-AAAAACAGA
14224068 AATTGAAA
1 AATTGAAA
14224076 TTACCTCAAC
Statistics
Matches: 94, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
100 25 0.27
101 13 0.14
102 56 0.60
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.23
Consensus pattern (100 bp):
AATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCACAATAT
GAGTTGATTTTGGAAAAAACAAAAATAAAAACAGA
Found at i:14224311 original size:141 final size:142
Alignment explanation
Indices: 14224094--14224378 Score: 439
Period size: 141 Copynumber: 2.0 Consensus size: 142
14224084 ACGTGTCCTG
** * * * * *
14224094 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTCTGAGAAATATAAATTGAAGACAGAAATTG
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTCTGAAAAACATAAACTGAAAACAGAAATTG
*
14224159 AAAATACCTCAGCGTGTCCTGAGGCCCAACTCACTTCTCGCAATATGAGTTGA-TTTTTGAAAAA
66 AAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
14224223 CAGAAATT-AAA
131 CAGAAATTGAAA
*
14224234 AGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTGAAAAACATAAACTGAAAACAGAAATT
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATT-TCTGAAAAACATAAACTGAAAACAGAAATT
*
14224299 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA
65 GAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA
* *
14224364 GCAGGAATTGAAA
130 ACAGAAATTGAAA
14224377 AG
1 AG
14224379 CAGAAATTGA
Statistics
Matches: 130, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
140 31 0.24
141 77 0.59
142 17 0.13
143 5 0.04
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (142 bp):
AGGCTCAACTCACCTCTCACAATATGAGTTGATTTCTGAAAAACATAAACTGAAAACAGAAATTG
AAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
CAGAAATTGAAA
Found at i:14224376 original size:14 final size:14
Alignment explanation
Indices: 14224357--14224391 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
14224347 AGTTGATTTT
*
14224357 TTGAAAAGCAGGAA
1 TTGAAAAGCAGAAA
14224371 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
14224385 TTGAAAA
1 TTGAAAA
14224392 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.54, C:0.06, G:0.23, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:14224426 original size:88 final size:86
Alignment explanation
Indices: 14224238--14224463 Score: 319
Period size: 87 Copynumber: 2.6 Consensus size: 86
14224228 ATTAAAAGGC
* * * *
14224238 TCAACTCACCTCTCACAATATGAGTTGATTCTTTGAAAAACATAAACTGAAAACAGAAATTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACAGAAATTGAAAACAGAAATTGAAA
* * *
14224303 ATACCTCAGCGTGTCCTGAGGC
65 ATACCTCAGCGTGCCCCGAGGA
*
14224325 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGGAATTGAAAAGCAGAAATTGAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA-CAGAAATTGAAAA-CAGAAATTGAA
14224390 AATACCTCAGCGTGCCCCGAGGA
64 AATACCTCAGCGTGCCCCGAGGA
* *
14224413 TCAACTCATCTCTCGTAATATGAGTTGA-TTTTTGACAAACAGAAATTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAGAAATTGAAA
14224464 TTACCTCATC
Statistics
Matches: 125, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
86 4 0.03
87 61 0.49
88 60 0.48
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (86 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAACAGAAATTGAAAA
TACCTCAGCGTGCCCCGAGGA
Found at i:14224499 original size:73 final size:73
Alignment explanation
Indices: 14224371--14224518 Score: 217
Period size: 73 Copynumber: 2.0 Consensus size: 73
14224361 AAAGCAGGAA
* *
14224371 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGATCAACTCATCTCTCGTAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGATCAACTCACCTCTCGCAATATGA
14224436 GTTGATTT
66 GTTGATTT
* * * * *
14224444 TTGACAAA-CAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGA-AAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGATCAACTCACCTCTCGCAATATG
14224508 AGTTGATTT
65 AGTTGATTT
14224517 TT
1 TT
14224519 TTTTAAAAGC
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 64 0.96
74 3 0.04
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30
Consensus pattern (73 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGATCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:14224705 original size:243 final size:234
Alignment explanation
Indices: 14224234--14224983 Score: 775
Period size: 243 Copynumber: 3.2 Consensus size: 234
14224224 AGAAATTAAA
** * *
14224234 AGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTGAAAAACATAAACT-GAAAACAGAAAT
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATT-TTTTTAAAACAGAAA-TAAAAAACAGAAAT
**
14224298 TGAAAATACCTCAGCGTGTCCTGAGG-CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
64 TGAAAATACCTCAGCGTGTCCTGAGGCCT-AACTCACCTCTCGCAATATGAGTTGATTTTTTTTA
* * * *
14224362 AAGCAGGAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGATCAACTCATCTCTC
128 AA--A--AA-T-------ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTC
* *
14224427 GTAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTG
181 GCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTG
* *
14224482 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAGCAGAAATTAAAAAAAAATA
1 AGGCTCAACTCACCTCTCACAATATGAGTTGA--TTTTTTTAAAA-CAGAAA-T---AAAAAACA
* *
14224547 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCCTAACTCACCTCTCGCAATGTAAGTTGATTTTT
59 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCCTAACTCACCTCTCGCAATATGAGTTGA-TTTT
*
14224612 TTTTAAAAAATATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTGGCAATAT
123 TTTTAAAAAATATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
14224677 GAGTTGATTTTTGAAAACTAGAAATTGAAATTACCTCAGCGTGTCCTG
188 GAGTTGATTTTTGAAAAC-AGAAATTGAAATTACCTCAGCGTGTCCTG
* *
14224725 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT------G----AAACAACAGAAATT-
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTAAAACAGAAATAAAAAACAGAAATTG
* * * * * *
14224777 AAGAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAG-TCA-ATTTTTT--G
66 AA-AATACCTCAGCGTGTCCTGAGGCCTAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAA
* * * *
14224838 AAACATAAACTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
130 AAATATAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * *
14224903 AATTTTTTG-AAACATAAACTGAAAATACCTCAGCATGTGACCTG
193 GA-TTTTTGAAAACAGAAATTGAAATTACCTCAGC--GTGTCCTG
14224947 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
14224984 GAAAACATGA
Statistics
Matches: 445, Mismatches: 39, Indels: 60
0.82 0.07 0.11
Matches are distributed among these distances:
219 23 0.05
220 18 0.04
221 46 0.10
222 44 0.10
223 4 0.01
224 57 0.13
232 1 0.00
239 5 0.01
242 4 0.01
243 122 0.27
248 31 0.07
249 7 0.02
250 9 0.02
251 2 0.00
253 1 0.00
254 60 0.13
255 11 0.02
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (234 bp):
AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTAAAACAGAAATAAAAAACAGAAATTG
AAAATACCTCAGCGTGTCCTGAGGCCTAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAA
AATATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTG
Found at i:14224814 original size:74 final size:75
Alignment explanation
Indices: 14224543--14224987 Score: 545
Period size: 74 Copynumber: 6.0 Consensus size: 75
14224533 ATTAAAAAAA
* * *
14224543 AATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGC-CTAACTCACCTCTCGCAATGTAAGTTGA
1 AATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTC-AACTCACCTCTCGCAATATGAGTTGA
* *
14224607 TTTTTTTTTAAAA
65 --TTTTTTGAAAC
* * *
14224620 AATATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTGGCAATATGAGTTGA-
1 AATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
14224684 TTTTTGAAA-
66 TTTTTGAAAC
* * *
14224693 ACTAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
1 AATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
14224757 TTTTTGAAAC
66 TTTTTGAAAC
* ** **
14224767 AACAGAAATT-AAGAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAA
1 AATAGAAATTGAA-AATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
14224831 TTTTTTGAAAC
65 TTTTTTGAAAC
* **
14224842 -AT--AAACTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTCA
1 AATAGAAATTGAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
14224904 ATTTTTTGAAAC
64 ATTTTTTGAAAC
* *
14224916 -AT--AAACTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTG
1 AATAGAAATTGAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
14224978 A-TTTTTGAAA
64 ATTTTTTGAAA
14224988 ACATGAATTA
Statistics
Matches: 334, Mismatches: 27, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
72 15 0.04
73 81 0.24
74 170 0.51
75 10 0.03
77 57 0.17
78 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (75 bp):
AATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTGAAAC
Found at i:14232753 original size:28 final size:28
Alignment explanation
Indices: 14232721--14232775 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
14232711 GTAGATCACG
14232721 AAATTACCCCTAAAGAGCAAAATTACCA
1 AAATTACCCCTAAAGAGCAAAATTACCA
*
14232749 AAATTACTCCTAAAGAGCAAAATTACC
1 AAATTACCCCTAAAGAGCAAAATTACC
14232776 GATATACCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.49, C:0.24, G:0.07, T:0.20
Consensus pattern (28 bp):
AAATTACCCCTAAAGAGCAAAATTACCA
Found at i:14242705 original size:33 final size:34
Alignment explanation
Indices: 14242657--14242720 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 34
14242647 AATACAATAA
14242657 AATATACGAATAATATAATATATAAAAAAAACAT
1 AATATACGAATAATATAATATATAAAAAAAACAT
* *
14242691 AATATATGAA-AATATAATATTTAAAAAAAA
1 AATATACGAATAATATAATATATAAAAAAAA
14242721 TAGTAAAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 19 0.68
34 9 0.32
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (34 bp):
AATATACGAATAATATAATATATAAAAAAAACAT
Found at i:14242720 original size:18 final size:17
Alignment explanation
Indices: 14242668--14242722 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
14242658 ATATACGAAT
14242668 AATATAATATATAAAAAA
1 AATATAATAT-TAAAAAA
* **
14242686 AACATAATA-T-ATGAA
1 AATATAATATTAAAAAA
14242701 AATATAATATTTAAAAAA
1 AATATAATA-TTAAAAAA
14242719 AATA
1 AATA
14242723 GTAAAAGTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
15 11 0.39
16 1 0.04
17 1 0.04
18 15 0.54
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
AATATAATATTAAAAAA
Found at i:14242843 original size:18 final size:20
Alignment explanation
Indices: 14242801--14242864 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 20
14242791 GACATTTTAA
14242801 AATA-AATATACATATAT-AT
1 AATATAATATA-ATATATAAT
*
14242820 -ATATATATCTAA-ATATAAT
1 AATATA-ATATAATATATAAT
14242839 AATATAATATAATATCATAAT
1 AATATAATATAATAT-ATAAT
14242860 AATAT
1 AATAT
14242865 TATTAGAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
18 7 0.19
19 9 0.24
20 11 0.30
21 10 0.27
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (20 bp):
AATATAATATAATATATAAT
Found at i:14242981 original size:16 final size:16
Alignment explanation
Indices: 14242951--14243007 Score: 73
Period size: 16 Copynumber: 3.6 Consensus size: 16
14242941 TATTATATAT
14242951 AATAATAAT-ACTAGA
1 AATAATAATAACTAGA
14242966 AATAATAATAACTAGA
1 AATAATAATAACTAGA
* *
14242982 AATAACAATACATTA-A
1 AATAATAATA-ACTAGA
14242998 AATAATAATA
1 AATAATAATA
14243008 TTTAATAACC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
15 9 0.24
16 25 0.68
17 3 0.08
ACGTcount: A:0.63, C:0.07, G:0.04, T:0.26
Consensus pattern (16 bp):
AATAATAATAACTAGA
Found at i:14243084 original size:3 final size:3
Alignment explanation
Indices: 14242949--14243068 Score: 59
Period size: 3 Copynumber: 39.0 Consensus size: 3
14242939 AATATTATAT
* *
14242949 ATA ATA ATA ATA CTA GA-A ATA ATA ATA ACTA GA-A ATA ACA ATA CATTA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA A-TA -ATA ATA ATA ATA -A-TA
* ** * * *
14242997 A-A ATA ATA ATA TTTA ATA ACC AGA ATA TTA ATA ATA ACA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
14243042 ATA ATA GA-A ATA ATA GTA TTA ATA ATA
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA
14243069 TTAGGAATGA
Statistics
Matches: 88, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
2 5 0.06
3 73 0.83
4 7 0.08
5 3 0.03
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:14244977 original size:91 final size:91
Alignment explanation
Indices: 14244804--14245044 Score: 285
Period size: 90 Copynumber: 2.7 Consensus size: 91
14244794 AAGCAAATTT
* *
14244804 TGAAAATACCT-AGTCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
1 TGAAAATACCTCA-ACATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* *
14244866 GAAAAATACAAATTGAAAAAAACAGAAAT
65 GAAAAACACAAATT--AAAAAACAGAAAC
* * *
14244895 TGAAAACT-CCTCAGCATGTGAGCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTT
1 TGAAAA-TACCTCAACATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
*
14244959 GAAAAACATAAATT-AAAAACAGAAAC
65 GAAAAACACAAATTAAAAAACAGAAAC
* * * * * *
14244985 TGAAAATAGCTCAACACGTGAGCCAAAGCTTAACTCACCTCTCGCAATATGAATTGATTT
1 TGAAAATACCTCAACATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
14245045 AAAGAGAATC
Statistics
Matches: 129, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
89 1 0.01
90 60 0.47
91 49 0.38
92 2 0.02
93 17 0.13
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (91 bp):
TGAAAATACCTCAACATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
AAAAACACAAATTAAAAAACAGAAAC
Found at i:14245094 original size:166 final size:163
Alignment explanation
Indices: 14244905--14245207 Score: 403
Period size: 166 Copynumber: 1.8 Consensus size: 163
14244895 TGAAAACTCC
** *
14244905 TCAGCATGTGAGCTGAGGCTCAACTCA-CTTCTCGCAATATGAGTTGATTTTTTTGAAAAACATA
1 TCAGCATGTGAGCCAAGGCTCAACTCACCTT-TCGCAATATGAGTTGA-TTCTTTGAAAAACATA
* * *
14244969 AATTAAAAACAGAAACTGAAAATAGCTCAACACGTGAGCC-AAAGCTTAACTCACCTCTCGCAAT
64 AACTAAAAACAGAAACTGAAAATACCTC-A-ACGT-AGCCTAAAGCTCAACTCACCTCTCGCAAT
14245033 ATGAATTGATTTAAAGAGAATCAGAAATTGAAAGTGGT
126 ATGAATTGATTTAAAGAGAATCAGAAATTGAAAGTGGT
* *
14245071 TCAGCATGTGAGCCAAGGCTCAACTCACCTTTCGTAATATGAGTTGATTCTTTGAAAAGCATAAA
1 TCAGCATGTGAGCCAAGGCTCAACTCACCTTTCGCAATATGAGTTGATTCTTTGAAAAACATAAA
* ** * * * * *
14245136 CTGAAAACAGAATTTGAAAATACCTCAGCGTATCCTGAGGCTCAACTCACCTCTCGCAATATGAG
66 CTAAAAACAGAAACTGAAAATACCTCAACGTAGCCTAAAGCTCAACTCACCTCTCGCAATATGAA
14245201 TTGATTT
131 TTGATTT
14245208 TTTAAAAAGC
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
162 3 0.03
163 35 0.29
164 1 0.01
165 37 0.31
166 40 0.34
167 3 0.03
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (163 bp):
TCAGCATGTGAGCCAAGGCTCAACTCACCTTTCGCAATATGAGTTGATTCTTTGAAAAACATAAA
CTAAAAACAGAAACTGAAAATACCTCAACGTAGCCTAAAGCTCAACTCACCTCTCGCAATATGAA
TTGATTTAAAGAGAATCAGAAATTGAAAGTGGT
Found at i:14245425 original size:175 final size:172
Alignment explanation
Indices: 14245086--14245577 Score: 600
Period size: 175 Copynumber: 2.8 Consensus size: 172
14245076 ATGTGAGCCA
* * * * *
14245086 AGGCTCAACTCACCTTTCGTAATATGAGTTGATTCTTTGAAAAGCAT-AAACTGAAAACAGAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-T-TTTGAAAA-AATAAAATTAAAAACAGAATT
*
14245150 TGAAAATACCTCAGCGT-ATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAA
63 TGAAAATACCTCAGCGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
* * *
14245214 AAGCAGGAATTGAAAAGTAGAAATTGAAAATACCTCAGCGTGCCCCG
127 AA-CAGAAATTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCCG
*
14245261 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTGGAAAAAATAAAAATTAAAAACAGAATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-GAAAAAAT-AAAATTAAAAACAGAATTT
* *
14245326 GAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
64 GAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
* * * *
14245391 AACA-AAATTGGAAAA-CAGAAGTTGAAATTACCTCAACGTGTCCTG
127 AACAGAAATT-GAAAAGCAGAAATTGAAAATACCTCAACGTGCCCCG
** * ** * *
14245436 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTCTG-AGAGTTATAAATTAAAGACAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-TGAAAAAATA-AAATTAAAAACAGAATTT
* * *
14245500 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCACAATATGAGTTGATTTTTGAAAAA
64 GAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
14245565 CAGAAATT-AAAAG
129 CAGAAATTGAAAAG
14245578 GCTCAACTCA
Statistics
Matches: 277, Mismatches: 29, Indels: 25
0.84 0.09 0.08
Matches are distributed among these distances:
171 4 0.01
172 49 0.18
173 11 0.04
174 38 0.14
175 119 0.43
176 8 0.03
177 47 0.17
178 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (172 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAATAAAATTAAAAACAGAATTTGA
AAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
GAAATTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCCG
Found at i:14245462 original size:86 final size:86
Alignment explanation
Indices: 14245086--14245576 Score: 583
Period size: 86 Copynumber: 5.7 Consensus size: 86
14245076 ATGTGAGCCA
* * * * * *
14245086 AGGCTCAACTCACCTTTCGTAATATGAGTTGATTCTTTGAAAAGCATAAACTGAAAACAGAATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTGAAAAACAGAAATTGAAAACAGAAATT
*
14245151 GAAAATACCTCAGCGTATCCTG
65 GAAAATACCTCAGCGTGTCCTG
* * *
14245173 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAGCAGGAATTGAAAAGTAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-CAGAAATTGAAAA-CAGAAAT
* *
14245238 TGAAAATACCTCAGCGTGCCCCG
64 TGAAAATACCTCAGCGTGTCCTG
* * * * * *
14245261 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTGGAAAAAATAAAAATTAAAAACAGAATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAAACAGAAATTGAAAACAGAAATT
* * *
14245326 GAAAATACCTCGGCATGTGACCCG
65 GAAAATACCTCAGC--GTGTCCTG
*
14245350 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-AAATTGGAAAACAGAAGTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-GAAAACAGAAATT
* *
14245414 GAAATTACCTCAACGTGTCCTG
65 GAAAATACCTCAGCGTGTCCTG
** * * *** *
14245436 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTCTGAGAGTTATAAATT-AAAGACAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAA-ACAGAAATT
14245500 GAAAATACCTCAGCGTGTCCTG
65 GAAAATACCTCAGCGTGTCCTG
* *
14245522 AGGCTCAACTCACTTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATT-AAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAA
14245577 GGCTCAACTC
Statistics
Matches: 345, Mismatches: 51, Indels: 18
0.83 0.12 0.04
Matches are distributed among these distances:
85 4 0.01
86 125 0.36
87 71 0.21
88 97 0.28
89 48 0.14
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAACAGAAATTG
AAAATACCTCAGCGTGTCCTG
Found at i:14245689 original size:141 final size:141
Alignment explanation
Indices: 14245436--14245718 Score: 392
Period size: 141 Copynumber: 2.0 Consensus size: 141
14245426 ACGTGTCCTG
** * *** *
14245436 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTCTGAGAGTTATAAATTAAAGACAGAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTCTGAAAAACATAAATGAAAGACAGAAATTG
* *
14245501 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCACAATATGAGTTGA-TTTTTGAAAAA
66 AAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAAA
14245565 CAGAAATTAAA
131 CAGAAATTAAA
* *
14245576 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTGAAAAACATAAACTGAAA-ATAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TCTGAAAAACATAAA-TGAAAGACAGAAAT
*
14245640 TGAAAACACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGA-AATATGAGTTGATTTTTTGAA
64 TGAAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC-ACAATATGAGTTGATTTTTTGAA
* *
14245704 AAGCAGGAATTAAA
128 AAACAGAAATTAAA
14245718 A
1 A
14245719 AGAAGAAATT
Statistics
Matches: 125, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
140 32 0.26
141 67 0.54
142 26 0.21
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.29
Consensus pattern (141 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTCTGAAAAACATAAATGAAAGACAGAAATTG
AAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAAA
CAGAAATTAAA
Found at i:14245768 original size:88 final size:87
Alignment explanation
Indices: 14245576--14245799 Score: 306
Period size: 87 Copynumber: 2.6 Consensus size: 87
14245566 AGAAATTAAA
* * * * *
14245576 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTGAAAAACATAAACTGAAAATAGAAATT
1 AGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTGAAAAACAGAAACTAAAAAAAGAAATT
* *
14245641 GAAAACACCTCAGTGTGTCCTG
66 GAAAACACCTCAGTGTGCCCCG
* * *
14245663 AGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTGAAAAGCAGGAATTAAAAAGAAGAAAT
1 AGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTGAAAAACAGAAACTAAAAA-AAGAAAT
*
14245728 TGAAAATACCTCAGTGTGCCCCG
65 TGAAAACACCTCAGTGTGCCCCG
* * *
14245751 AGGCTCAACTCATCTCTCGTAATATGAGTTGA-TTTTTGACAAACAGAAA
1 AGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTGAAAAACAGAAA
14245800 TTGAAATTAC
Statistics
Matches: 120, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
87 64 0.53
88 56 0.47
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTGAAAAACAGAAACTAAAAAAAGAAATT
GAAAACACCTCAGTGTGCCCCG
Found at i:14245783 original size:229 final size:226
Alignment explanation
Indices: 14245350--14245801 Score: 624
Period size: 229 Copynumber: 2.0 Consensus size: 226
14245340 ATGTGACCCG
* *
14245350 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAATTGGAAAACAGAAGTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAACTGGAAAACAGAAATTG
** ** * * *
14245415 AAATTACCTCAACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTCTGAGAGTT
66 AAAACACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGAAATATGAGTTGATTTCTGAAAGTC
* * *
14245480 ATAAATTAAAGACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCACAAT
131 AGAAATTAAAGACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCACAAT
14245545 ATGAGTTGATTTTTGAAAAACAGAAATTAAA
196 ATGAGTTGATTTTTGAAAAACAGAAATTAAA
*
14245576 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTGAAAAACATAAACT-GAAAATAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTGAAAAACA-AAACTGGAAAACAGAAAT
** *
14245640 TGAAAACACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTGAAA
64 TGAAAACACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGAAATATGAGTTGA-TTTCTG-AA
* *
14245705 AG-CAGGAATTAAAAAGA-AGAAATTGAAAATACCTCAGTGTGCCCCGAGGCTCAACTCA-TCTC
127 AGTCAGAAATT--AAAGACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACT-TC
** *
14245767 TCGTAATATGAGTTGATTTTTGACAAACAGAAATT
189 TCACAATATGAGTTGATTTTTGAAAAACAGAAATT
14245802 GAAATTACCT
Statistics
Matches: 198, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
226 34 0.17
227 69 0.35
228 15 0.08
229 75 0.38
230 5 0.03
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (226 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAACTGGAAAACAGAAATTG
AAAACACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGAAATATGAGTTGATTTCTGAAAGTC
AGAAATTAAAGACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCACAAT
ATGAGTTGATTTTTGAAAAACAGAAATTAAA
Found at i:14245841 original size:73 final size:73
Alignment explanation
Indices: 14245722--14245860 Score: 217
Period size: 73 Copynumber: 1.9 Consensus size: 73
14245712 ATTAAAAAGA
* *
14245722 AGAAATTGAAAATACCTCAGTGTGCCCCGAGGCTCAACTCATCTCTCGTAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGTGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
14245787 TGACAAAC
66 TGACAAAC
* * *
14245795 AGAAATTGAAATTACCTCA-TCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGAAATTGAAAATACCTCAGT-GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
14245859 TT
65 TT
14245861 TTTAAAAGCA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
72 1 0.02
73 59 0.98
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (73 bp):
AGAAATTGAAAATACCTCAGTGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TGACAAAC
Found at i:14245889 original size:17 final size:18
Alignment explanation
Indices: 14245864--14245898 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
14245854 GATTTTTTTT
*
14245864 AAAAGCAGAAATT-AAAA
1 AAAAACAGAAATTGAAAA
14245881 AAAAACAGAAATTGAAAA
1 AAAAACAGAAATTGAAAA
14245899 TACCTCAGCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.71, C:0.06, G:0.11, T:0.11
Consensus pattern (18 bp):
AAAAACAGAAATTGAAAA
Found at i:14245973 original size:80 final size:77
Alignment explanation
Indices: 14245881--14246270 Score: 343
Period size: 74 Copynumber: 5.2 Consensus size: 77
14245871 GAAATTAAAA
* * * *
14245881 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATGTAAGTT
1 AAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCACAACTCACCTCTCGCAATATGAGTT
14245946 GACTTTTTTTTTTTG
66 GA---TTTTTTTTTG
* * * **
14245961 AAAAATATAAATTGAAAATACCTCAGTGTGCCCTGAGGCACAACTCACCT-AGGCAATATGAGTT
1 AAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCACAACTCACCTCTCGCAATATGAGTT
14246025 GA-----TTTTG
66 GATTTTTTTTTG
* * *
14246032 AAAACTAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCACAACTCACCTCTCGCAATATGAGTT
14246097 GA----TTTTTG
66 GATTTTTTTTTG
* * ***
14246105 AAACAACAGAAATT-AAGAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAG
1 AAA-AATAGAAATTGAA-AATACCTCAGCGTGTCCTGAGGCACAACTCACCTCTCGCAATATGAG
* *
14246169 -TCA--ATTTTTTG
64 TTGATTTTTTTTTG
* * * * * *
14246180 AAACAT--AAACTAAAAATACCTCAGCATACGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAATAGAAATTGAAAATACCTCAGCGT--GTCCTGAGGCACAACTCACCTCTCGCAATATGAG
14246243 TTGA----TTTTTG
64 TTGATTTTTTTTTG
*
14246253 AAAAATACAAATTGAAAA
1 AAAAATAGAAATTGAAAA
14246271 AATAGAAATT
Statistics
Matches: 264, Mismatches: 34, Indels: 29
0.81 0.10 0.09
Matches are distributed among these distances:
71 49 0.19
72 30 0.11
73 25 0.09
74 84 0.32
75 19 0.07
79 12 0.05
80 45 0.17
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (77 bp):
AAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCACAACTCACCTCTCGCAATATGAGTT
GATTTTTTTTTG
Found at i:14246134 original size:74 final size:73
Alignment explanation
Indices: 14245955--14246270 Score: 365
Period size: 74 Copynumber: 4.3 Consensus size: 73
14245945 TGACTTTTTT
* * * * * **
14245955 TTTTTGAAAAATATAAATTGAAAATACCTCAGTGTGCCCTGAGGCACAACTCACCT-AGGCAATA
1 TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
14246019 TGAGTTGA
66 TGAGTTGA
* *
14246027 -TTTTG-AAAACTAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 TTTTTGAAAAAC-AGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
14246090 ATGAGTTGA
65 ATGAGTTGA
**
14246099 TTTTTGAAACAACAGAAATT-AAGAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAA
1 TTTTTGAAA-AACAGAAATTGAA-AATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAA
**
14246163 TATGAGTCAA
64 TATGAGTTGA
* * * *
14246173 TTTTTTG--AAACATAAACTAAAAATACCTCAGCATACGACCTGAGGCTCAACTCACCTCTCGCA
1 -TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGT--GACCTGAGGCTCAACTCACCTCTCGCA
14246236 ATATGAGTTGA
63 ATATGAGTTGA
* *
14246247 TTTTTGAAAAATACAAATTGAAAA
1 TTTTTGAAAAACAGAAATTGAAAA
14246271 AATAGAAATT
Statistics
Matches: 207, Mismatches: 25, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
70 4 0.02
71 44 0.21
72 34 0.16
73 16 0.08
74 88 0.43
75 21 0.10
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (73 bp):
TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGA
Found at i:14246273 original size:15 final size:15
Alignment explanation
Indices: 14246253--14246285 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
14246243 TTGATTTTTG
14246253 AAAAATACAAATTGA
1 AAAAATACAAATTGA
*
14246268 AAAAATAGAAATTGA
1 AAAAATACAAATTGA
14246283 AAA
1 AAA
14246286 CTCCTCAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.09, T:0.18
Consensus pattern (15 bp):
AAAAATACAAATTGA
Found at i:14246362 original size:90 final size:91
Alignment explanation
Indices: 14246214--14246429 Score: 278
Period size: 90 Copynumber: 2.4 Consensus size: 91
14246204 CATACGACCT
* *
14246214 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATACAAATTGAAAAAATAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACACAAATT-AAAAAACAGA
* * *
14246277 AATTGAAAACT-CCTCAGCATGTGAGCC
65 AAATGAAAA-TACCTCAACACGTGAGCC
* *
14246304 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATT-AAAAACAGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACACAAATTAAAAAACAGAA
*
14246368 AATGAAAATAGCTCAACACGTGAGCC
66 AATGAAAATACCTCAACACGTGAGCC
* * * *
14246394 AAAGCTTAACTCACCTCTCGCAATATGAATTGATTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
14246430 AAAGACAAAC
Statistics
Matches: 110, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
89 1 0.01
90 92 0.84
92 17 0.15
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (91 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACACAAATTAAAAAACAGAA
AATGAAAATACCTCAACACGTGAGCC
Found at i:14246616 original size:14 final size:14
Alignment explanation
Indices: 14246597--14246628 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
14246587 TGATTTTTTA
*
14246597 AAAAGCAGGAATTG
1 AAAAGCAGAAATTG
14246611 AAAAGCAGAAATTG
1 AAAAGCAGAAATTG
14246625 AAAA
1 AAAA
14246629 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.59, C:0.06, G:0.22, T:0.12
Consensus pattern (14 bp):
AAAAGCAGAAATTG
Found at i:14246659 original size:88 final size:86
Alignment explanation
Indices: 14246471--14246968 Score: 345
Period size: 86 Copynumber: 5.6 Consensus size: 86
14246461 ATATGAGCCA
* * *
14246471 AGGCTCAACTCACCTTTCGTAATATGAGTTGATTCTTTGAAAAACATAAACTGAAAATAGAAATT
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGATT-TTTGAAAAACAGAAACTGAAAACAGAAATT
* *
14246536 GAAAATACCTCAGCGTGTCCTG
65 GAAAATACCTCAGCGTGCCCCG
* * *
14246558 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTAAAAAGCAGGAATTGAAAAGCAGAAAT
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAA-CAGAAACTGAAAA-CAGAAAT
14246623 TGAAAATACCTCAGCGTGCCCCG
64 TGAAAATACCTCAGCGTGCCCCG
** * * * * * * *
14246646 AGGCTCAACTCACCTCTCACAATGTGAGTTGATTTTGGAAAAA-ATAAAAATTAAAAAAGAATTT
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAACA-GAAACTGAAAACAGAAATT
* ** * *** * *
14246710 GAACAACAGAATTTGAAAATACCTCGG
65 G-A-AA-A-TACCTCAGCGTGCC-CCG
* * * *
14246737 CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-AAATTGGA
1 -A-G-G-CTC-A-ACTC-----ACCTCTCGTAATATGAGTTGATTTTTGAAAAACAGAAACT-GA
* * * *
14246801 AAACAGAAATTGAAATTACCTCAACGTGTCCTG
54 AAACAGAAATTGAAAATACCTCAGCGTGCCCCG
** * * * * * * * *
14246834 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTCTGAGAAATATAAATTGAAGACAAAAAATT
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAACAGAAACTGAAAAC-AGAAATT
* *
14246899 -AAAATACCTCAGCGTGTCCTG
65 GAAAATACCTCAGCGTGCCCCG
* *
14246920 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAACAGAAA
14246969 TTAAAAGGCT
Statistics
Matches: 325, Mismatches: 63, Indels: 47
0.75 0.14 0.11
Matches are distributed among these distances:
86 113 0.35
87 62 0.19
88 67 0.21
89 1 0.00
90 6 0.02
91 5 0.02
92 2 0.01
93 3 0.01
94 2 0.01
95 3 0.01
96 2 0.01
97 5 0.02
98 6 0.02
100 2 0.01
101 5 0.02
102 40 0.12
103 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.27
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAACAGAAACTGAAAACAGAAATTG
AAAATACCTCAGCGTGCCCCG
Found at i:14246726 original size:100 final size:101
Alignment explanation
Indices: 14246608--14246790 Score: 280
Period size: 102 Copynumber: 1.8 Consensus size: 101
14246598 AAAGCAGGAA
* *
14246608 TTGAAAAGCAGAAATTGAAAATACCTCAGC-GTGCCCCGAGGCTCAACTCACCTCTCACAATGTG
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCACAATATG
14246672 AGTTGATTTTGGAAAAAATAAAAATTAAAAAAGAAT
66 AGTTGATTTTGGAAAAAATAAAAATTAAAAAAGAAT
* * *
14246708 TTGAACAA-CAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATA
1 TTGAA-AAGCAGAAATTGAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCACAATA
*
14246772 TGAGTTGATTTTTGAAAAA
64 TGAGTTGATTTTGGAAAAA
14246791 CAAAATTGGA
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
100 25 0.34
101 2 0.03
102 47 0.64
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (101 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCACAATATG
AGTTGATTTTGGAAAAAATAAAAATTAAAAAAGAAT
Found at i:14246814 original size:102 final size:100
Alignment explanation
Indices: 14246597--14246815 Score: 273
Period size: 102 Copynumber: 2.2 Consensus size: 100
14246587 TGATTTTTTA
* *
14246597 AAAAGCAGGAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTC
1 AAAA-CAGAAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTC
*
14246662 TCACAATGTGAGTTGATTTTGGAAAAAATAAAAATT
65 TCACAATATGAGTTGATTTTGGAAAAAATAAAAATT
* * * *
14246698 AAAAAAGAATTTGAACAA-CAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACC
1 AAAACAGAAATTGAA-AAGCAGAAATTGAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACC
* * *
14246762 TCTCGCAATATGAGTTGATTTTTG-AAAAA-CAAAATT
63 TCTCACAATATGAGTTGATTTTGGAAAAAATAAAAATT
14246798 GGAAAACAGAAATTGAAA
1 --AAAACAGAAATTGAAA
14246816 TTACCTCAAC
Statistics
Matches: 101, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
100 34 0.34
101 12 0.12
102 55 0.54
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (100 bp):
AAAACAGAAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT
CACAATATGAGTTGATTTTGGAAAAAATAAAAATT
Found at i:14247087 original size:141 final size:142
Alignment explanation
Indices: 14246834--14247118 Score: 407
Period size: 141 Copynumber: 2.0 Consensus size: 142
14246824 ACGTGTCCTG
** * * *
14246834 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTCTGAGAAATATAAATTGAAGACAAAAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTCTGAAAAACATAAACTGAAGACAAAAAATT
*
14246899 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTGAAAAA
66 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
14246963 CAGAAATT-AAA
131 CAGAAATTGAAA
* *
14246974 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTGAAAAACATAAACTGAA-A-ATAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TCTGAAAAACATAAACTGAAGACA-AAAAA
* *
14247037 TTGAAAATACCTCAGTGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
64 TT-AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
* *
14247102 AAGCAGGAATTGAAA
128 AAACAGAAATTGAAA
14247117 AG
1 AG
14247119 CAGAAATTGA
Statistics
Matches: 128, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
139 1 0.01
140 39 0.30
141 66 0.52
142 17 0.13
143 5 0.04
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.29
Consensus pattern (142 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTCTGAAAAACATAAACTGAAGACAAAAAATT
AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
CAGAAATTGAAA
Found at i:14247116 original size:14 final size:14
Alignment explanation
Indices: 14247097--14247131 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
14247087 AGTTGATTTT
*
14247097 TTGAAAAGCAGGAA
1 TTGAAAAGCAGAAA
14247111 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
14247125 TTGAAAA
1 TTGAAAA
14247132 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.54, C:0.06, G:0.23, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:14247178 original size:88 final size:86
Alignment explanation
Indices: 14246974--14247203 Score: 309
Period size: 87 Copynumber: 2.6 Consensus size: 86
14246964 AGAAATTAAA
* * * *
14246974 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTGAAAAACATAAACTGAAAATAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACAGAAATTGAAAACAGAAATT
* * *
14247039 GAAAATACCTCAGTGTGTCCTG
65 GAAAATACCTCAGCGTGCCCCG
* *
14247061 AGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGGAATTGAAAAGCAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA-CAGAAATTGAAAA-CAGAAAT
14247126 TGAAAATACCTCAGCGTGCCCCG
64 TGAAAATACCTCAGCGTGCCCCG
* * *
14247149 AGGCTCAACTTATCTCTCGTAATATGAGTTGA-TTTTTGACAAACAGAAATTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAGAAATTGAAA
14247204 TTACCTCATC
Statistics
Matches: 126, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
86 4 0.03
87 65 0.52
88 57 0.45
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.28
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAACAGAAATTG
AAAATACCTCAGCGTGCCCCG
Found at i:14247239 original size:73 final size:73
Alignment explanation
Indices: 14247111--14247258 Score: 217
Period size: 73 Copynumber: 2.0 Consensus size: 73
14247101 AAAGCAGGAA
* * *
14247111 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTTATCTCTCGTAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
14247176 GTTGATTT
66 GTTGATTT
* * * *
14247184 TTGACAAA-CAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGA-AAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
14247248 AGTTGATTT
65 AGTTGATTT
14247257 TT
1 TT
14247259 TTTTAAAAGC
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 64 0.96
74 3 0.04
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (73 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:14247289 original size:18 final size:19
Alignment explanation
Indices: 14247263--14247298 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14247253 ATTTTTTTTT
*
14247263 AAAAGCAGAAATT-AAAAA
1 AAAAACAGAAATTGAAAAA
14247281 AAAAACAGAAATTGAAAA
1 AAAAACAGAAATTGAAAA
14247299 TACCTCAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.72, C:0.06, G:0.11, T:0.11
Consensus pattern (19 bp):
AAAAACAGAAATTGAAAAA
Found at i:14247350 original size:94 final size:96
Alignment explanation
Indices: 14247189--14247362 Score: 271
Period size: 94 Copynumber: 1.8 Consensus size: 96
14247179 GATTTTTGAC
* * ** * *
14247189 AAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCAAGTCCTGAGGCCCAACTCACCTCTCGCAATATAAGTTGA
14247254 TTT-TTTTTT-AAAAGCAGAAATTAAAAAAA
66 TTTATTTTTTGAAAAGCAGAAATTAAAAAAA
*
14247283 AAACAGAAATTGAAAATACCTCAGCAAGTCCTGAGGCCCAACTCACCTCTCGCAATGTAAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCAAGTCCTGAGGCCCAACTCACCTCTCGCAATATAAGTTGA
14247348 TTTATTTTTTGAAAA
66 TTTATTTTTTGAAAA
14247363 ATATAAATTG
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
94 61 0.86
95 6 0.08
96 4 0.06
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (96 bp):
AAACAGAAATTGAAAATACCTCAGCAAGTCCTGAGGCCCAACTCACCTCTCGCAATATAAGTTGA
TTTATTTTTTGAAAAGCAGAAATTAAAAAAA
Found at i:14247404 original size:172 final size:163
Alignment explanation
Indices: 14247027--14247578 Score: 532
Period size: 172 Copynumber: 3.4 Consensus size: 163
14247017 ACATAAACTG
* *
14247027 AAAATAGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTG
1 AAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * ** *
14247092 A--TTTTTTGAAAAGCAGGAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTC
66 ATTTTTTTTGAAAAGCAGAAATTAAAAAACAGAAATTGAAAATACCTCAGCAAGCCCCGAGGCCC
* * * *
14247155 AACTTATCTCTCGTAATATGAGTTGATTTTTGA
131 AACTCACCTCTCGCAATATAAGTTGATTTTTGA
* * * *
14247188 CAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * *
14247253 ATTTTTTTTTAAAAGCAGAAATTAAAAAAAAAACAGAAATTGAAAATACCTCAGCAAGTCCTGAG
66 ATTTTTTTTGAAAAGCAGAAATT----AAAAAACAGAAATTGAAAATACCTCAGCAAGCCCCGAG
*
14247318 GCCCAACTCACCTCTCGCAATGTAAGTTGATTTATTTTTTGA
127 GCCCAACTCACCTCTCGCAATATAAGTTG----A-TTTTTGA
* * * *
14247360 AAAATATAAATTGAAAATACTTCAGCGTGCCCTGAGGCTCAACTCACCTCTGGCAATATGAGTTG
1 AAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* ** * * *
14247425 A---TTTTTGAAAA-C------T-------AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
66 ATTTTTTTTGAAAAGCAGAAATTAAAAAACAGAAATTGAAAATACCTCAGCAAGCCCCGAGGCCC
*
14247473 AACTCACCTCTCGCAATATGAGTTGATTTTTGA
131 AACTCACCTCTCGCAATATAAGTTGATTTTTGA
* * **
14247506 AACAACAGAAATT-AAGAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGT
1 AA-AATAGAAATTGAA-AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
**
14247570 CAATTTTTT
64 TGATTTTTT
14247579 GAAACATAAA
Statistics
Matches: 331, Mismatches: 44, Indels: 43
0.79 0.11 0.10
Matches are distributed among these distances:
146 11 0.03
147 53 0.16
150 3 0.01
151 54 0.16
161 60 0.18
162 1 0.00
163 18 0.05
167 55 0.17
168 1 0.00
169 9 0.03
171 1 0.00
172 65 0.20
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (163 bp):
AAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTTGAAAAGCAGAAATTAAAAAACAGAAATTGAAAATACCTCAGCAAGCCCCGAGGCCC
AACTCACCTCTCGCAATATAAGTTGATTTTTGA
Found at i:14247732 original size:74 final size:73
Alignment explanation
Indices: 14247282--14247751 Score: 522
Period size: 74 Copynumber: 6.3 Consensus size: 73
14247272 AATTAAAAAA
* ** * * * *
14247282 AAAACAGAAATTGAAAATACCTCAGCAAGTCCTGAGGCCCAACTCACCTCTCGCAATGTAAGTTG
1 AAAACATAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
14247347 ATTTATTTTTTG
66 ----ATTTTTTG
* * * *
14247359 AAAAATATAAATTGAAAATACTTCAGCGTGCCCTGAGGCTCAACTCACCTCTGGCAATATGAGTT
1 -AAAACATAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
14247424 GA-TTTTTG
65 GATTTTTTG
* * *
14247432 AAAACTAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAC-ATAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
14247497 GA-TTTTTG
65 GATTTTTTG
* **
14247505 AAACAACAGAAATT-AAGAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAG
1 -AA-AACATAAATTGAA-AATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
**
14247569 TCAATTTTTTG
63 TTGATTTTTTG
* * *
14247580 -AAACATAAACTGAAAATACCTCAGCGTGTGACTTGAGGCTCAACTCACCTCTCGTAATATGAGT
1 AAAACATAAATTGAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
**
14247644 CAATTTTTTG
64 TGATTTTTTG
* *
14247654 -AAACATAAACTGAAAATACCGCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACATAAATTGAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
14247718 TGA-TTTTTG
64 TGATTTTTTG
*
14247727 AAAACATGAATT-AAAGATACCTCAG
1 AAAACATAAATTGAAA-ATACCTCAG
14247752 AGTATCAAAA
Statistics
Matches: 345, Mismatches: 37, Indels: 24
0.85 0.09 0.06
Matches are distributed among these distances:
72 23 0.07
73 82 0.24
74 176 0.51
75 9 0.03
78 55 0.16
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (73 bp):
AAAACATAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTG
Found at i:14249295 original size:9 final size:9
Alignment explanation
Indices: 14249276--14249315 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
14249266 GACCTCTCCA
14249276 TTTTCTTTTC
1 TTTT-TTTTC
14249286 TTTTTTTTC
1 TTTTTTTTC
*
14249295 -TTTCTTTC
1 TTTTTTTTC
14249303 TTTTTTTTC
1 TTTTTTTTC
14249312 TTTT
1 TTTT
14249316 GAATGAATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
8 7 0.26
9 16 0.59
10 4 0.15
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:14249298 original size:13 final size:13
Alignment explanation
Indices: 14249276--14249315 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
14249266 GACCTCTCCA
14249276 TTTTCTTTTCTTTT
1 TTTTC-TTTCTTTT
14249290 TTTTCTTTCTTTCT
1 TTTTCTTTCTTT-T
14249304 TTTT-TTTCTTTT
1 TTTTCTTTCTTTT
14249316 GAATGAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 1 0.04
13 14 0.56
14 10 0.40
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTCTTTCTTTT
Found at i:14249304 original size:17 final size:18
Alignment explanation
Indices: 14249277--14249314 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
14249267 ACCTCTCCAT
14249277 TTTCTTTTCTTTTTTTTC
1 TTTCTTTTCTTTTTTTTC
14249295 TTTC-TTTCTTTTTTTTC
1 TTTCTTTTCTTTTTTTTC
14249312 TTT
1 TTT
14249315 TGAATGAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTCTTTTCTTTTTTTTC
Found at i:14254491 original size:26 final size:27
Alignment explanation
Indices: 14254462--14254521 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
14254452 AATAACAATA
*
14254462 AAATATATTA-ATAGTATGA-TACTTAC
1 AAATATATTACATAGTATAATTA-TTAC
*
14254488 AAATATA-TACATAGTATAATTATTTC
1 AAATATATTACATAGTATAATTATTAC
14254514 AAATATAT
1 AAATATAT
14254522 ATATAATACA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 2 0.07
26 25 0.86
27 2 0.07
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (27 bp):
AAATATATTACATAGTATAATTATTAC
Found at i:14254574 original size:19 final size:18
Alignment explanation
Indices: 14254550--14254602 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 18
14254540 TACGAATAAT
14254550 ATAATATATAAAAAAATA
1 ATAATATATAAAAAAATA
*
14254568 CATAATATAT-GAAAAAT-
1 -ATAATATATAAAAAAATA
*
14254585 ATAATATTTAAAAAAATA
1 ATAATATATAAAAAAATA
14254603 TAGTAAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
16 8 0.28
17 6 0.21
18 6 0.21
19 9 0.31
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (18 bp):
ATAATATATAAAAAAATA
Found at i:14254575 original size:17 final size:15
Alignment explanation
Indices: 14254550--14254602 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 15
14254540 TACGAATAAT
14254550 ATAATATATAAAAAA
1 ATAATATATAAAAAA
14254565 ATACATAATATATGAAAAA
1 ATA-AT-ATATA--AAAAA
*
14254584 TATAATATTTAAAAAA
1 -ATAATATATAAAAAA
14254600 ATA
1 ATA
14254603 TAGTAAAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
15 6 0.19
16 7 0.22
17 5 0.16
18 4 0.12
19 7 0.22
20 3 0.09
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (15 bp):
ATAATATATAAAAAA
Found at i:14254575 original size:35 final size:33
Alignment explanation
Indices: 14254514--14254602 Score: 108
Period size: 35 Copynumber: 2.7 Consensus size: 33
14254504 TAATTATTTC
* *
14254514 AAATAT-ATATATAATACAATAAAATATACGAA
1 AAATATAATATATAAAAAAATAAAATATACGAA
* *
14254546 TAATATAATATATAAAAAAATACATAATATATGAA
1 AAATATAATATATAAAAAAATA-A-AATATACGAA
*
14254581 AAATATAATATTTAAAAAAATA
1 AAATATAATATATAAAAAAATA
14254603 TAGTAAAAGT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
32 5 0.10
33 13 0.27
34 1 0.02
35 29 0.60
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.30
Consensus pattern (33 bp):
AAATATAATATATAAAAAAATAAAATATACGAA
Found at i:14254845 original size:16 final size:16
Alignment explanation
Indices: 14254817--14254873 Score: 73
Period size: 16 Copynumber: 3.6 Consensus size: 16
14254807 AATATTATAT
14254817 AATAATAAT-ACTAGA
1 AATAATAATAACTAGA
14254832 AATAATAATAACTAGA
1 AATAATAATAACTAGA
* *
14254848 AATAACAATACATTA-A
1 AATAATAATA-ACTAGA
14254864 AATAATAATA
1 AATAATAATA
14254874 TTTAATAACC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
15 9 0.24
16 25 0.68
17 3 0.08
ACGTcount: A:0.63, C:0.07, G:0.04, T:0.26
Consensus pattern (16 bp):
AATAATAATAACTAGA
Found at i:14256254 original size:46 final size:44
Alignment explanation
Indices: 14256150--14256257 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
14256140 TGTCTTTGAC
** * * *
14256150 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
14256194 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
14256240 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
14256258 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:14259289 original size:16 final size:16
Alignment explanation
Indices: 14259270--14259306 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
14259260 ATGATTGGTT
14259270 AAAAATAAAAAATAA-A
1 AAAAATAAAAAA-AATA
14259286 AAAAATAAAAAAAATA
1 AAAAATAAAAAAAATA
14259302 AAAAA
1 AAAAA
14259307 CTTAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (16 bp):
AAAAATAAAAAAAATA
Found at i:14259290 original size:9 final size:9
Alignment explanation
Indices: 14259276--14259306 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
14259266 GGTTAAAAAT
14259276 AAAAAATAA
1 AAAAAATAA
14259285 AAAAAATAA
1 AAAAAATAA
14259294 AAAAAATAA
1 AAAAAATAA
14259303 AAAA
1 AAAA
14259307 CTTAAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAAATAA
Found at i:14259347 original size:25 final size:25
Alignment explanation
Indices: 14259302--14259351 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
14259292 AAAAAAAATA
14259302 AAAAACTTAAAAATTTAAAATTAAT
1 AAAAACTTAAAAATTTAAAATTAAT
14259327 AAAAACTTAAAAATTTAAAATTAAT
1 AAAAACTTAAAAATTTAAAATTAAT
14259352 CAATAGTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (25 bp):
AAAAACTTAAAAATTTAAAATTAAT
Found at i:14259364 original size:25 final size:25
Alignment explanation
Indices: 14259273--14259351 Score: 86
Period size: 25 Copynumber: 3.1 Consensus size: 25
14259263 ATTGGTTAAA
* ** **
14259273 AATAAAAAATAAAAAAAATAAAAAA
1 AATAAAAACTAAAAAATTTAAAATT
*
14259298 AATAAAAAACTTAAAAATTTAAAATT
1 AAT-AAAAACTAAAAAATTTAAAATT
*
14259324 AATAAAAACTTAAAAATTTAAAATT
1 AATAAAAACTAAAAAATTTAAAATT
14259349 AAT
1 AAT
14259352 CAATAGTAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 28 0.60
26 19 0.40
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (25 bp):
AATAAAAACTAAAAAATTTAAAATT
Found at i:14263521 original size:19 final size:21
Alignment explanation
Indices: 14263493--14263540 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
14263483 TTATTATTTA
14263493 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
14263513 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTCTAATAT
14263533 TTTTAGTT
1 TTTTAGTT
14263541 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:14266113 original size:3 final size:3
Alignment explanation
Indices: 14266105--14266150 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
14266095 TTTGATTATA
14266105 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
14266151 CTAAACCTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:14268297 original size:32 final size:32
Alignment explanation
Indices: 14268231--14268298 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 32
14268221 TTTTTGTTAA
* *
14268231 TGTTGGATTCTAAAATTTTAGTTTATTATATT
1 TGTTGGATTCTAAAATTTTAGTCTATGATATT
*
14268263 TGTTGGATTCTGAAATTATTATGTCT-TGAT-TT
1 TGTTGGATTCTAAAATT-TTA-GTCTATGATATT
14268295 TGTT
1 TGTT
14268299 AGATATTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
32 22 0.71
33 6 0.19
34 3 0.10
ACGTcount: A:0.24, C:0.04, G:0.16, T:0.56
Consensus pattern (32 bp):
TGTTGGATTCTAAAATTTTAGTCTATGATATT
Found at i:14268324 original size:27 final size:27
Alignment explanation
Indices: 14268294--14268366 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
14268284 TGTCTTGATT
14268294 TTGTTAGATATTGATTATGTTTCAAGC
1 TTGTTAGATATTGATTATGTTTCAAGC
*
14268321 TTGTTAGATATTGAGTTTATTATGTTTTAAGC
1 TTGTTAGATATT--G---ATTATGTTTCAAGC
*
14268353 TTGTTGGATATTGA
1 TTGTTAGATATTGA
14268367 AATGATTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 13 0.33
29 1 0.03
30 1 0.03
32 24 0.62
ACGTcount: A:0.25, C:0.04, G:0.21, T:0.51
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTCAAGC
Found at i:14269382 original size:22 final size:22
Alignment explanation
Indices: 14269314--14269440 Score: 100
Period size: 22 Copynumber: 5.6 Consensus size: 22
14269304 GATACTTTTA
14269314 ATGTGGTGTAATATTAGTTATGC
1 ATGTGGTGTAATATTAGTTAT-C
** *
14269337 ACT-TGG-ACAATATTGTTGTTATC
1 A-TGTGGTGTAATA-T-TAGTTATC
14269360 ATGTGGTGTAATATTAGTTATC
1 ATGTGGTGTAATATTAGTTATC
*
14269382 ATATGGTGTAATATTAGTTATGC
1 ATGTGGTGTAATATTAGTTAT-C
* *
14269405 ACT-TGG-ATAATATTGTTGTTATC
1 A-TGTGGTGTAATA-T-TAGTTATC
14269428 ATGTGGTGTAATA
1 ATGTGGTGTAATA
14269441 CTAATTATGT
Statistics
Matches: 83, Mismatches: 10, Indels: 21
0.73 0.09 0.18
Matches are distributed among these distances:
22 38 0.46
23 22 0.27
24 23 0.28
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (22 bp):
ATGTGGTGTAATATTAGTTATC
Found at i:14269427 original size:46 final size:46
Alignment explanation
Indices: 14269376--14269464 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
14269366 TGTAATATTA
* *
14269376 GTTATCATATGGTGTAATATTAGTTATGCACTTGGATAATATTGTT
1 GTTATCATATGGTGTAATACTAATTATGCACTTGGATAATATTGTT
* * *
14269422 GTTATCATGTGGTGTAATACTAATTATGTATTTGGATAATATT
1 GTTATCATATGGTGTAATACTAATTATGCACTTGGATAATATT
14269465 ATTAATTTCT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.46
Consensus pattern (46 bp):
GTTATCATATGGTGTAATACTAATTATGCACTTGGATAATATTGTT
Found at i:14269462 original size:68 final size:68
Alignment explanation
Indices: 14269317--14269465 Score: 219
Period size: 68 Copynumber: 2.2 Consensus size: 68
14269307 ACTTTTAATG
* * *
14269317 TGGTGTAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATATTAGTTATC
1 TGGTATAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATACTAATTATC
14269382 ATA
66 ATA
* *
14269385 TGGTGTAATATTAGTTATGCACTTGGATAATATTGTTGTTATCATGTGGTGTAATACTAATTATG
1 TGGTATAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATACTAATTAT-
* *
14269450 TATT
65 CATA
14269454 TGG-ATAATATTA
1 TGGTATAATATTA
14269466 TTAATTTCTA
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
68 69 0.93
69 5 0.07
ACGTcount: A:0.29, C:0.06, G:0.20, T:0.45
Consensus pattern (68 bp):
TGGTATAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATACTAATTATC
ATA
Found at i:14269909 original size:15 final size:14
Alignment explanation
Indices: 14269877--14269943 Score: 89
Period size: 14 Copynumber: 4.7 Consensus size: 14
14269867 CCAGAAAAGT
14269877 AAATCATTTTCCAG
1 AAATCATTTTCCAG
14269891 AAATCATTTTCCAAG
1 AAATCATTTTCC-AG
*
14269906 AAATTATTTTCCAG
1 AAATCATTTTCCAG
* *
14269920 AAATCATTTTTCGG
1 AAATCATTTTCCAG
*
14269934 AAAACATTTT
1 AAATCATTTT
14269944 ACCTGCAAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
14 34 0.72
15 13 0.28
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:14271983 original size:136 final size:136
Alignment explanation
Indices: 14271750--14272160 Score: 750
Period size: 136 Copynumber: 3.0 Consensus size: 136
14271740 AGCCTATTCA
* * *
14271750 GGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
1 GGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
14271815 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCC
66 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCC
14271880 CATTTG
131 CATTTG
*
14271886 GGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCACTTATT
1 GGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
14271951 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCC
66 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCC
14272016 CATTTG
131 CATTTG
*
14272022 GGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTAGGCCTTAGCCCCTTATT
1 GGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
* *
14272087 CAGATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
66 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AACATATGCAAGC
14272152 CCATTTG
130 CCATTTG
14272159 GG
1 GG
14272161 GAGACTACTC
Statistics
Matches: 266, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
136 244 0.92
137 22 0.08
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (136 bp):
GGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCC
CATTTG
Found at i:14273980 original size:26 final size:26
Alignment explanation
Indices: 14273944--14274105 Score: 261
Period size: 26 Copynumber: 6.2 Consensus size: 26
14273934 TATGGAATTC
14273944 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
14273970 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
14273996 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
14274022 TTATCATGAAGCATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
14274048 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
14274074 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
14274100 TTATCA
1 TTATCA
14274106 ATTTGTATCA
Statistics
Matches: 128, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 128 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:14274077 original size:78 final size:78
Alignment explanation
Indices: 14273944--14274105 Score: 297
Period size: 78 Copynumber: 2.1 Consensus size: 78
14273934 TATGGAATTC
14273944 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
14274009 TTTACCTAACCTA
66 TTTACCTAACCTA
* * *
14274022 TTATCATGAAGCATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
14274087 TTTACCTAACCTA
66 TTTACCTAACCTA
14274100 TTATCA
1 TTATCA
14274106 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (78 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
TTTACCTAACCTA
Found at i:14278006 original size:131 final size:131
Alignment explanation
Indices: 14277729--14278012 Score: 302
Period size: 131 Copynumber: 2.2 Consensus size: 131
14277719 GTACTCATTC
* * *
14277729 AAAAATTCTTCAAAACGAAGACGGGATTTGATGTTTGGCAATTCGCGAAATCGTGCCCTAACGGG
1 AAAAATAC-TCAAAACGAAGACGGGATTCGATGTTTGGCAATTCGCGAAATCGTGCCCTAACAGG
** * * *
14277794 TTGGGTTGCAATTCCGCGTTTGCTTGAAATAATCGAATATCACTTCGAAATTTCACTCACGCCTT
65 TTGGGTTGCAATTCCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTCCACTCACACCTT
*
14277859 TT
130 CT
* * * * *
14277861 AAAATTCCTCAAAACAAAGACGAGG-TTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACATG
1 AAAAATACTCAAAACGAAGACG-GGATTCGATGTTTGGCAATTCGCGAAATCGTGCCCTAACAGG
** * ** * * * *
14277925 TTGGGTTGCAATTTTGCGTTTGCTCAAAATAATTGGGCT-TCCCTTCAAAATTCCATTCATATCT
65 TTGGGTTGCAATTCCGCGTTTGCTCAAAATAA-TCGAATATCACTTCAAAATTCCACTCACACCT
14277989 TCT
129 TCT
* *
14277992 AAAAATATTTAAAACGAAGAC
1 AAAAATACTCAAAACGAAGAC
14278013 AATATTCGGC
Statistics
Matches: 123, Mismatches: 27, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
131 112 0.91
132 11 0.09
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (131 bp):
AAAAATACTCAAAACGAAGACGGGATTCGATGTTTGGCAATTCGCGAAATCGTGCCCTAACAGGT
TGGGTTGCAATTCCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTCCACTCACACCTTC
T
Found at i:14289458 original size:44 final size:44
Alignment explanation
Indices: 14289395--14289680 Score: 410
Period size: 44 Copynumber: 6.5 Consensus size: 44
14289385 GTAAATCCTG
* * * *
14289395 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAGGATAA
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAT
* *
14289439 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGACCGAAGATAG
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAT
* * * *
14289483 CAGATTTGACATCTCTGTATTGGCGGTGAGTAGATCGAAGATCT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAT
* *
14289527 CAGATTTGGCATCTCTGTATTGGCGGAGAGTAGATCGAAGATCT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAT
* * *
14289571 CAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGGTCT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAT
* *
14289615 CAGATTTAGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAT
*
14289659 CAGATTTGGCGTCTCTGTATTG
1 CAGATTTGGCATCTCTGTATTG
14289681 ACAAAAAAAT
Statistics
Matches: 219, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 219 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (44 bp):
CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAT
Found at i:14293119 original size:131 final size:131
Alignment explanation
Indices: 14292854--14293119 Score: 365
Period size: 131 Copynumber: 2.0 Consensus size: 131
14292844 TACTCATTCA
*
14292854 AAAATTCTTCAAAACGAAGACGGGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGGGT
1 AAAATTCCTCAAAACGAAGACGGGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGGGT
** * * *
14292919 TGGGTTGCAATTCAGCGTTTGCTTGAAATAATCGAATATCACTTCGAAATTTCACTCACACCTTT
66 TGGGTTGCAATTCAGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTCCACTCACACCTTC
14292984 T
131 T
*
14292985 AAAATTCCTCAAAACGAAGACGAGG-TTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAATTCCTCAAAACGAAGACG-GGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGGG
** ** * * * *
14293049 TTGGGTTGCAATTTTGCGTTTGCTCAAAATAATCGGGCT-TCCCTTCAAAATTCCATTCATATCT
65 TTGGGTTGCAATTCAGCGTTTGCTCAAAATAATC-GAATATCACTTCAAAATTCCACTCACACCT
14293113 TCT
129 TCT
14293116 AAAA
1 AAAA
14293120 ATATTTAAAA
Statistics
Matches: 118, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
131 114 0.97
132 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (131 bp):
AAAATTCCTCAAAACGAAGACGGGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGGGT
TGGGTTGCAATTCAGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTCCACTCACACCTTC
T
Found at i:14293151 original size:131 final size:132
Alignment explanation
Indices: 14292853--14293213 Score: 336
Period size: 131 Copynumber: 2.8 Consensus size: 132
14292843 GTACTCATTC
* ** * *
14292853 AAAAATTCTTCAAAACGAAGACGGGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGGG
1 AAAAATAC-TCAAAACGAAGACAAGATTCGACGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
** ** * *
14292918 TTGGGTTGCAATTCAGCGTTTGCTTGAAATAATC-GAATATCACTTCGAAATTTCACTCACACCT
65 TTGGGTTGCAATTTTGCGTTTGCTCAAAATAATCGGAATATCACTTCAAAATTCCACTCACACCT
*
14292982 TTT
130 TCT
* * * * *
14292985 AAAATTCCTCAAAACGAAGACGAGGTTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGT
1 AAAAATACTCAAAACGAAGACAAGATTCGACGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGT
** * * * *
14293050 TGGGTTGCAATTTTGCGTTTGCTCAAAATAATCGGGCT-TCCCTTCAAAATTCCATTCATATCTT
66 TGGGTTGCAATTTTGCGTTTGCTCAAAATAATCGGAATATCACTTCAAAATTCCACTCACACCTT
14293114 CT
131 CT
* * * * * * * *
14293116 AAAAATATTTAAAACGAAGACAATATTC-AGCGTTTGACAATTCG-AGAATCATGCCTTATCGTG
1 AAAAATACTCAAAACGAAGACAAGATTCGA-CGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
* *** *
14293179 CTGGGTTGTGGTTTATG-GTTTGCTCAAAATGATCG
65 TTGGGTTGCAATTT-TGCGTTTGCTCAAAATAATCG
14293214 AACATTCCTC
Statistics
Matches: 190, Mismatches: 36, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
130 43 0.23
131 139 0.73
132 8 0.04
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (132 bp):
AAAAATACTCAAAACGAAGACAAGATTCGACGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGT
TGGGTTGCAATTTTGCGTTTGCTCAAAATAATCGGAATATCACTTCAAAATTCCACTCACACCTT
CT
Found at i:14297766 original size:47 final size:47
Alignment explanation
Indices: 14297697--14297789 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
14297687 GATGCATTTG
14297697 AATTTGGATAACGTATTAGAATTCATTCTTGATGGAAAATATTTTTA
1 AATTTGGATAACGTATTAGAATTCATTCTTGATGGAAAATATTTTTA
* * *
14297744 AATTTGGATAACGTGTTCGAATTCATTCTTGATGGGAAATATTTTT
1 AATTTGGATAACGTATTAGAATTCATTCTTGATGGAAAATATTTTT
14297790 TATACTTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (47 bp):
AATTTGGATAACGTATTAGAATTCATTCTTGATGGAAAATATTTTTA
Found at i:14298513 original size:20 final size:20
Alignment explanation
Indices: 14298456--14298514 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
14298446 GATATAATCT
***
14298456 TATAAAAAAATTATAAAAGA
1 TATAAAAAAATTATAATTTA
**
14298476 TATAATCAAA-TATGAATTTA
1 TATAAAAAAATTAT-AATTTA
14298496 TATAAAAAAATTATAATTT
1 TATAAAAAAATTATAATTT
14298515 TTTCAATTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
19 3 0.10
20 24 0.80
21 3 0.10
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (20 bp):
TATAAAAAAATTATAATTTA
Found at i:14301715 original size:16 final size:17
Alignment explanation
Indices: 14301655--14301712 Score: 66
Period size: 16 Copynumber: 3.5 Consensus size: 17
14301645 TAAAATTAAT
14301655 ATAAAAATTATAA-AAA
1 ATAAAAATTATAATAAA
**
14301671 ATAAAAACTTATAATATT
1 ATAAAAA-TTATAATAAA
*
14301689 TTAAAAA-TATAATAAA
1 ATAAAAATTATAATAAA
14301705 ATAAAAAT
1 ATAAAAAT
14301713 ATATGAAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
16 20 0.61
17 6 0.18
18 7 0.21
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (17 bp):
ATAAAAATTATAATAAA
Found at i:14307969 original size:17 final size:17
Alignment explanation
Indices: 14307947--14308016 Score: 52
Period size: 17 Copynumber: 4.1 Consensus size: 17
14307937 GTTTTCATAT
14307947 TATTTTATTACATATTA
1 TATTTTATTACATATTA
* * * *
14307964 TATTTTACTCCTTATAA
1 TATTTTATTACATATTA
*
14307981 TATTTTTATATATATATTA
1 TA-TTTTAT-TACATATTA
* *
14308000 TATTATA-TACATTTTA
1 TATTTTATTACATATTA
14308016 T
1 T
14308017 CATATATATT
Statistics
Matches: 39, Mismatches: 12, Indels: 5
0.70 0.21 0.09
Matches are distributed among these distances:
16 8 0.21
17 15 0.38
18 9 0.23
19 7 0.18
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTTTATTACATATTA
Found at i:14307997 original size:14 final size:14
Alignment explanation
Indices: 14307976--14308031 Score: 55
Period size: 13 Copynumber: 4.1 Consensus size: 14
14307966 TTTTACTCCT
14307976 TATA-ATATTTTTA
1 TATATATATTTTTA
*
14307989 TATATATA-TTATA
1 TATATATATTTTTA
*
14308002 T-TATATACATTTTA
1 TATATATA-TTTTTA
14308016 TCATATATATTTTTA
1 T-ATATATATTTTTA
14308031 T
1 T
14308032 TTTATTTATC
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
12 6 0.17
13 9 0.26
14 8 0.23
15 6 0.17
16 6 0.17
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.59
Consensus pattern (14 bp):
TATATATATTTTTA
Found at i:14308007 original size:16 final size:14
Alignment explanation
Indices: 14307975--14308028 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
14307965 ATTTTACTCC
14307975 TTATA-ATATTTT-
1 TTATATATATTTTA
*
14307987 TATATATATATTATA
1 T-TATATATATTTTA
*
14308002 TTATATACATTTTA
1 TTATATATATTTTA
*
14308016 TCATATATATTTT
1 TTATATATATTTT
14308029 TATTTTATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
12 1 0.03
13 4 0.12
14 28 0.82
15 1 0.03
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATATATATTTTA
Found at i:14311575 original size:21 final size:21
Alignment explanation
Indices: 14311549--14311611 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
14311539 TAATATAATT
14311549 TATAAACAAAATGTATAATAA
1 TATAAACAAAATGTATAATAA
* * * *
14311570 TATAAACCATATGAAAAATAA
1 TATAAACAAAATGTATAATAA
*
14311591 TATAAA-AAATATATATAATAA
1 TATAAACAAA-ATGTATAATAA
14311612 AATTTATATA
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
20 1 0.03
21 31 0.97
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (21 bp):
TATAAACAAAATGTATAATAA
Found at i:14311598 original size:12 final size:13
Alignment explanation
Indices: 14311578--14311706 Score: 73
Period size: 14 Copynumber: 9.1 Consensus size: 13
14311568 AATATAAACC
*
14311578 ATATGAAAAATA-
1 ATATAAAAAATAT
14311590 ATATAAAAAATAT
1 ATATAAAAAATAT
*
14311603 ATATAATAAAATTT
1 ATATAA-AAAATAT
*
14311617 ATATAATATAATAT
1 ATATAA-AAAATAT
*
14311631 ATAATAAAAGGAAGAT
1 AT-ATAAAA--AATAT
14311647 ATTATAACGAATAATAT
1 A-TATAA--AA-AATAT
*
14311664 ATAATAAAATATGAT
1 AT-ATAAAAAAT-AT
*
14311679 ATGTAATAAAATAT
1 ATATAA-AAAATAT
14311693 ATA-AATAAAATAT
1 ATATAA-AAAATAT
14311706 A
1 A
14311707 ATGAAATAAA
Statistics
Matches: 94, Mismatches: 12, Indels: 21
0.74 0.09 0.17
Matches are distributed among these distances:
12 11 0.12
13 17 0.18
14 30 0.32
15 14 0.15
16 10 0.11
17 10 0.11
18 2 0.02
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (13 bp):
ATATAAAAAATAT
Found at i:14311619 original size:14 final size:13
Alignment explanation
Indices: 14311584--14311639 Score: 62
Period size: 12 Copynumber: 4.3 Consensus size: 13
14311574 AACCATATGA
*
14311584 AAAATAATATAA-
1 AAAATTATATAAT
14311596 AAAATATATATAAT
1 AAAAT-TATATAAT
14311610 AAAATTTATATAAT
1 AAAA-TTATATAAT
*
14311624 ATAA-TATATAAT
1 AAAATTATATAAT
14311636 AAAA
1 AAAA
14311640 GGAAGATATT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
12 16 0.42
13 6 0.16
14 15 0.39
15 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
AAAATTATATAAT
Found at i:14311680 original size:17 final size:17
Alignment explanation
Indices: 14311660--14311692 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14311650 ATAACGAATA
14311660 ATATATAATAAAATATG
1 ATATATAATAAAATATG
*
14311677 ATATGTAATAAAATAT
1 ATATATAATAAAATAT
14311693 ATAAATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
ATATATAATAAAATATG
Found at i:14311889 original size:12 final size:12
Alignment explanation
Indices: 14311874--14311939 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
14311864 ATAGTAAAAT
14311874 ATATAATGTATA
1 ATATAATGTATA
*
14311886 ATATAATTTATAA
1 ATATAATGTAT-A
*
14311899 ATAAAATGTATA
1 ATATAATGTATA
**
14311911 ATAATAA-AAATA
1 AT-ATAATGTATA
14311923 ATATAATAG-ATA
1 ATATAAT-GTATA
14311935 ATATA
1 ATATA
14311940 TAAATAAAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
11 4 0.09
12 26 0.60
13 13 0.30
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (12 bp):
ATATAATGTATA
Found at i:14311923 original size:25 final size:26
Alignment explanation
Indices: 14311871--14311951 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 26
14311861 TATATAGTAA
* **
14311871 AATATATAATGTATAATATAATTTAT
1 AATATAAAATGTATAATATAATAAAT
14311897 AA-ATAAAATGTATAATAATAA-AAAT
1 AATATAAAATGTATAAT-ATAATAAAT
*
14311922 AATATAATA-G-ATAATAT-ATAAAT
1 AATATAAAATGTATAATATAATAAAT
*
14311945 AAAATAA
1 AATATAA
14311952 TATATAGTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
22 1 0.02
23 12 0.26
24 5 0.11
25 18 0.38
26 11 0.23
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (26 bp):
AATATAAAATGTATAATATAATAAAT
Found at i:14311930 original size:14 final size:15
Alignment explanation
Indices: 14311911--14311955 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 15
14311901 AAAATGTATA
14311911 ATAATA-AAAATAAT
1 ATAATAGAAAATAAT
*
14311925 ATAATAGATAAT-AT
1 ATAATAGAAAATAAT
*
14311939 ATAA-ATAAAATAAT
1 ATAATAGAAAATAAT
14311953 ATA
1 ATA
14311956 TAGTATTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 5 0.19
14 17 0.65
15 4 0.15
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAATAGAAAATAAT
Found at i:14313561 original size:44 final size:44
Alignment explanation
Indices: 14313504--14313721 Score: 341
Period size: 44 Copynumber: 5.0 Consensus size: 44
14313494 GCCATGTTGA
*
14313504 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
14313548 TATCTTTGATCTGCTC-CTTACAACCT-CAGGGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAA--TACAGAGACGCCAAATCTGC
*
14313592 TATCTTCGATTTGCTCTCTGACAATACAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* *
14313636 TATCTTCGATCTGCTCTCTGACAATATAGAGATGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
14313680 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCT
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCT
14313722 TGGATCTGTT
Statistics
Matches: 157, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
43 7 0.04
44 143 0.91
45 7 0.04
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.29
Consensus pattern (44 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
Found at i:14313631 original size:88 final size:88
Alignment explanation
Indices: 14313455--14313721 Score: 385
Period size: 88 Copynumber: 3.0 Consensus size: 88
14313445 AGAATGCAAT
* * * ** *
14313455 ATCTACTATCTTTAACCTGCTCCTTGCAACCTCAGGGACGCCATGT-TGATATCTTCGATCTGCT
1 ATCTACTATCTTTGATCTGCTCCTTACAACCTCAGGGACGCCAAATCTGCTATCTTCGATCTGCT
14313519 CTCTGACAATACAGAGACGCCAA
66 CTCTGACAATACAGAGACGCCAA
*
14313542 ATCTACTATCTTTGATCTGCTCCTTACAACCTCAGGGACGCCAAATCTGCTATCTTCGATTTGCT
1 ATCTACTATCTTTGATCTGCTCCTTACAACCTCAGGGACGCCAAATCTGCTATCTTCGATCTGCT
14313607 CTCTGACAATACAGAGACGCCAA
66 CTCTGACAATACAGAGACGCCAA
* * * ** * *
14313630 ATCTGCTATCTTCGATCTGCTCTCTGACAATAT-AGAGATGCCAAATCTGCTATCTTCGATCTGC
1 ATCTACTATCTTTGATCTGCTC-CTTACAACCTCAGGGACGCCAAATCTGCTATCTTCGATCTGC
14313694 TCTCTGACAATACAGAGACGCCAA
65 TCTCTGACAATACAGAGACGCCAA
14313718 ATCT
1 ATCT
14313722 TGGATCTGTT
Statistics
Matches: 163, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
87 41 0.25
88 115 0.71
89 7 0.04
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (88 bp):
ATCTACTATCTTTGATCTGCTCCTTACAACCTCAGGGACGCCAAATCTGCTATCTTCGATCTGCT
CTCTGACAATACAGAGACGCCAA
Found at i:14313863 original size:89 final size:89
Alignment explanation
Indices: 14313762--14314046 Score: 464
Period size: 89 Copynumber: 3.2 Consensus size: 89
14313752 CCAAATTAGC
* * *
14313762 TATGTCTTCGATCTGCTCCTTGTAAACACAAAGATGCCAAATCATCTTGGATCTACTTCGATATA
1 TATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATATG
*
14313827 AAAACATCCGAAGGTTAGATTTGA
66 AAAACATCCGAAGGTTAGATCTGA
*
14313851 TATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTTGATATG
1 TATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATATG
14313916 AAAACATCCGAAGGTTAGATCT-A
66 AAAACATCCGAAGGTTAGATCTGA
14313939 CTATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATAT
1 -TATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATAT
* * * *
14314004 GAAAACATCCAAATGTTATATCTGC
65 GAAAACATCCGAAGGTTAGATCTGA
*
14314029 TATGTCTTCTATCTGCTC
1 TATGTCTTCGATCTGCTC
14314047 TCCGTCGAAT
Statistics
Matches: 183, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
88 1 0.01
89 182 0.99
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (89 bp):
TATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATATG
AAAACATCCGAAGGTTAGATCTGA
Found at i:14319063 original size:80 final size:80
Alignment explanation
Indices: 14318979--14319127 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
14318969 TATGGTAACC
* * * *
14318979 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
14319043 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
14319059 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
14319124 CCGG
66 CCGG
14319128 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:14319069 original size:40 final size:38
Alignment explanation
Indices: 14319020--14319127 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
14319010 ATCACGATTT
*
14319020 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
14319060 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
14319100 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
14319128 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:14327179 original size:80 final size:80
Alignment explanation
Indices: 14327095--14327243 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
14327085 TATGGTAACC
* * * *
14327095 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
14327159 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
14327175 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
14327240 CCGG
66 CCGG
14327244 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:14327185 original size:40 final size:38
Alignment explanation
Indices: 14327136--14327243 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
14327126 ATCACGATTT
*
14327136 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
14327176 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
14327216 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
14327244 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:14330194 original size:10 final size:11
Alignment explanation
Indices: 14330174--14330198 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14330164 AAGAGTATGG
14330174 AAAAAGAAAAA
1 AAAAAGAAAAA
14330185 AAAAAGAAAAA
1 AAAAAGAAAAA
14330196 AAA
1 AAA
14330199 TGTTTCATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:14331539 original size:40 final size:40
Alignment explanation
Indices: 14331473--14331623 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
14331463 AAATTGAATG
* * *
14331473 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
14331512 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
14331552 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
14331592 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
14331624 ACACGTGATT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:14331637 original size:40 final size:39
Alignment explanation
Indices: 14331511--14331639 Score: 134
Period size: 40 Copynumber: 3.2 Consensus size: 39
14331501 TGCTGGAAAT
* * * *
14331511 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCCAGT-GA
* * * *
14331551 TATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTA
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCCAGTGA
*
14331590 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACACGTGA
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGC-CA-GTGA
14331632 T-TATCCGG
1 TATATCCGG
14331640 TTATATTCCC
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
40 69 0.93
41 2 0.03
42 3 0.04
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCCAGTGA
Found at i:14338279 original size:58 final size:57
Alignment explanation
Indices: 14338179--14338299 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 57
14338169 TATGGAAAAA
14338179 GAAAAAAAAGAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAG
1 GAAAAAAAAGAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAG
* * ***
14338236 GAAAGAAAAGAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAG
1 GAAAAAAAAGAAAAAAA-ATGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAG
*
14338294 GGAAAA
1 GAAAAA
14338300 GGGGGAGGAT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
57 18 0.33
58 33 0.61
59 3 0.06
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.26
Consensus pattern (57 bp):
GAAAAAAAAGAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAG
Found at i:14339552 original size:40 final size:40
Alignment explanation
Indices: 14339486--14339652 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
14339476 AAATTGAATG
* * *
14339486 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
14339525 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
14339565 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
14339605 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
14339645 ATATCCGG
1 ATATCCGG
14339653 ATATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:14343538 original size:10 final size:11
Alignment explanation
Indices: 14343523--14343551 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
14343513 TAAGTTTAAG
14343523 AAAATAAAAA-
1 AAAATAAAAAT
14343533 AAAATAAAAAT
1 AAAATAAAAAT
14343544 AAAATAAA
1 AAAATAAA
14343552 TGAATTCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:14345203 original size:3 final size:3
Alignment explanation
Indices: 14345195--14345256 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
14345185 TAAGTAAAGA
14345195 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14345243 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
14345257 GGCAAAGAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14354425 original size:167 final size:167
Alignment explanation
Indices: 14354149--14354482 Score: 659
Period size: 167 Copynumber: 2.0 Consensus size: 167
14354139 GGCCCGAAGG
14354149 CCCGCCTGAAAAATGGGAGGGTTTGGGTAAAAAAATAGGCCCGAAAAATAGGCTTGGGCAAAAAA
1 CCCGCCTGAAAAATGGGAGGGTTTGGGTAAAAAAATAGGCCCGAAAAATAGGCTTGGGCAAAAAA
14354214 ATGAGGCCCGTTTAGAAAACAGGCCGGGCCTCGGGTAAGAGTTTTTTGGCCCGGGGCCGGCCCGG
66 ATGAGGCCCGTTTAGAAAACAGGCCGGGCCTCGGGTAAGAGTTTTTTGGCCCGGGGCCGGCCCGG
14354279 CCTGAATTATATATTAATATATATTTTTATTTTATTT
131 CCTGAATTATATATTAATATATATTTTTATTTTATTT
*
14354316 CCCGCCTGAAAAATGGGAGGGTTTGGGTAAAAATATAGGCCCGAAAAATAGGCTTGGGCAAAAAA
1 CCCGCCTGAAAAATGGGAGGGTTTGGGTAAAAAAATAGGCCCGAAAAATAGGCTTGGGCAAAAAA
14354381 ATGAGGCCCGTTTAGAAAACAGGCCGGGCCTCGGGTAAGAGTTTTTTGGCCCGGGGCCGGCCCGG
66 ATGAGGCCCGTTTAGAAAACAGGCCGGGCCTCGGGTAAGAGTTTTTTGGCCCGGGGCCGGCCCGG
14354446 CCTGAATTATATATTAATATATATTTTTATTTTATTT
131 CCTGAATTATATATTAATATATATTTTTATTTTATTT
14354483 TTAATCATTT
Statistics
Matches: 166, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
167 166 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (167 bp):
CCCGCCTGAAAAATGGGAGGGTTTGGGTAAAAAAATAGGCCCGAAAAATAGGCTTGGGCAAAAAA
ATGAGGCCCGTTTAGAAAACAGGCCGGGCCTCGGGTAAGAGTTTTTTGGCCCGGGGCCGGCCCGG
CCTGAATTATATATTAATATATATTTTTATTTTATTT
Found at i:14361480 original size:18 final size:18
Alignment explanation
Indices: 14361437--14361529 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
14361427 CAATCCCAAC
*
14361437 TACTGTATACGTGAACAG
1 TACTGTATACGTGAATAG
* * *
14361455 TACCGTATTCGTAAATAG
1 TACTGTATACGTGAATAG
*
14361473 TGCTGTATACGTGAATAG
1 TACTGTATACGTGAATAG
14361491 TACTGTATACGTGAATAG
1 TACTGTATACGTGAATAG
14361509 TACTGTATACGTGAATAG
1 TACTGTATACGTGAATAG
14361527 TAC
1 TAC
14361530 CGTAAACGGT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (18 bp):
TACTGTATACGTGAATAG
Found at i:14362662 original size:19 final size:19
Alignment explanation
Indices: 14362638--14362677 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
14362628 ATTCTACACT
14362638 AAGATAATGTTAATATAGG
1 AAGATAATGTTAATATAGG
14362657 AAGATAATGTTAATATAGG
1 AAGATAATGTTAATATAGG
14362676 AA
1 AA
14362678 ATATCTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.20, T:0.30
Consensus pattern (19 bp):
AAGATAATGTTAATATAGG
Found at i:14362894 original size:15 final size:17
Alignment explanation
Indices: 14362874--14362906 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
14362864 AATTATAAAA
14362874 AATTATGA-AAA-ACTT
1 AATTATGAGAAAGACTT
14362889 AATTATGAGAAAGACTT
1 AATTATGAGAAAGACTT
14362906 A
1 A
14362907 TGCCAGGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 3 0.19
17 5 0.31
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.30
Consensus pattern (17 bp):
AATTATGAGAAAGACTT
Found at i:14363063 original size:28 final size:27
Alignment explanation
Indices: 14363008--14363063 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
14362998 TAATTTACCC
* *
14363008 AAAATTTCCATCACACTTCTTATAAAT
1 AAAATTTCCATAACACTTCTTAAAAAT
* *
14363035 AAAATTTTCATAACACTTGTATAAAAAT
1 AAAATTTCCATAACACTTCT-TAAAAAT
14363063 A
1 A
14363064 CTTTTTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.46, C:0.16, G:0.02, T:0.36
Consensus pattern (27 bp):
AAAATTTCCATAACACTTCTTAAAAAT
Found at i:14364401 original size:17 final size:17
Alignment explanation
Indices: 14364375--14364418 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
14364365 TGAGTTTTCA
14364375 TTATTCAGATAGTTCTC
1 TTATTCAGATAGTTCTC
*
14364392 TTATTTAGATAGTTCTC
1 TTATTCAGATAGTTCTC
* *
14364409 ATAGTCAGAT
1 TTATTCAGAT
14364419 GCAAAATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (17 bp):
TTATTCAGATAGTTCTC
Found at i:14364589 original size:24 final size:24
Alignment explanation
Indices: 14364557--14364604 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
14364547 AGCATATAGG
14364557 GTATCAAGTACCTGTCCATCCTTA
1 GTATCAAGTACCTGTCCATCCTTA
14364581 GTATCAAGTACCTGTCCATCCTTA
1 GTATCAAGTACCTGTCCATCCTTA
14364605 CACACCGCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.33
Consensus pattern (24 bp):
GTATCAAGTACCTGTCCATCCTTA
Found at i:14365135 original size:54 final size:54
Alignment explanation
Indices: 14365038--14365180 Score: 141
Period size: 54 Copynumber: 2.6 Consensus size: 54
14365028 TTGTGTGGCC
* * * *
14365038 CACACGGCCTAGCACACGAT-CGTGTGACTTAAAACAAAGAGTTACACGA-TCTAG
1 CACACGGCCAAGCACACG-TCCGTGTGACTCAAAATAAAGAGTTACA-GAGTCTAA
* * * *
14365092 CACATGGCTAAGCACATG-CCTGTGTGACTCAAAATAGAA-AGTTATAGAGTCTAA
1 CACACGGCCAAGCACACGTCC-GTGTGACTCAAAATA-AAGAGTTACAGAGTCTAA
*
14365146 CATACGGCCAAGCACACGTCCGTGTGACTCAAAAT
1 CACACGGCCAAGCACACGTCCGTGTGACTCAAAAT
14365181 CCAAAAAAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
53 3 0.04
54 65 0.90
55 4 0.06
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.20
Consensus pattern (54 bp):
CACACGGCCAAGCACACGTCCGTGTGACTCAAAATAAAGAGTTACAGAGTCTAA
Found at i:14366615 original size:19 final size:20
Alignment explanation
Indices: 14366593--14366631 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
14366583 TAAAAATATC
*
14366593 TAAAAATTCATAT-TTTTTA
1 TAAAAATACATATCTTTTTA
14366612 TAAAAATACATATCTTTTTA
1 TAAAAATACATATCTTTTTA
14366632 AAATTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (20 bp):
TAAAAATACATATCTTTTTA
Found at i:14367686 original size:15 final size:16
Alignment explanation
Indices: 14367666--14367697 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
14367656 ATATTTTGAG
14367666 AAATATAT-AAAATAT
1 AAATATATAAAAATAT
14367681 AAATATATAAAAATAT
1 AAATATATAAAAATAT
14367697 A
1 A
14367698 TACAATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATATATAAAAATAT
Found at i:14369805 original size:3 final size:3
Alignment explanation
Indices: 14369721--14369789 Score: 129
Period size: 3 Copynumber: 23.0 Consensus size: 3
14369711 TTAGTAACTC
*
14369721 TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14369769 TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
14369790 CAGCGTTAGT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:14370098 original size:19 final size:18
Alignment explanation
Indices: 14370056--14370103 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
14370046 TATTATTAAC
14370056 ATTATTACTATTAATTTT
1 ATTATTACTATTAATTTT
*
14370074 ATTTATTACTATTACCTTTT
1 A-TTATTACTATTA-ATTTT
*
14370094 ATTATCACTA
1 ATTATTACTA
14370104 CTACTACTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 1 0.04
19 20 0.77
20 5 0.19
ACGTcount: A:0.31, C:0.12, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTATTACTATTAATTTT
Found at i:14370214 original size:6 final size:6
Alignment explanation
Indices: 14370203--14370242 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
14370193 TATTTTAATG
* *
14370203 TATTCT TATTCT TATTCT TATTCT TATTAT TATTAT TATT
1 TATTCT TATTCT TATTCT TATTCT TATTCT TATTCT TATT
14370243 TTCATCTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.68
Consensus pattern (6 bp):
TATTCT
Found at i:14377995 original size:46 final size:46
Alignment explanation
Indices: 14377924--14378152 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
14377914 GAGTGTGCTC
14377924 CCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
1 CCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
*
14377970 CCTAATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
1 CCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
*
14378016 CCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
1 CCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
* * ***
14378062 CGTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAA
1 CCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
* * * * * * *
14378108 CATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
14378153 TCATGTCAAA
Statistics
Matches: 167, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 167 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (46 bp):
CCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
Found at i:14383630 original size:15 final size:16
Alignment explanation
Indices: 14383610--14383644 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
14383600 TACTTTGATT
*
14383610 AAATAAAAA-AATTAA
1 AAATAAAAATAATAAA
14383625 AAATAAAAATAATAAA
1 AAATAAAAATAATAAA
14383641 AAAT
1 AAAT
14383645 CGATTCAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (16 bp):
AAATAAAAATAATAAA
Found at i:14383798 original size:38 final size:40
Alignment explanation
Indices: 14383755--14383838 Score: 102
Period size: 37 Copynumber: 2.2 Consensus size: 40
14383745 TCCAATTCAA
*
14383755 GTTTTTAAAATTTTTATAAGTTTATAT-CAATTTTAATAC
1 GTTTTTAAAATTTTTATAAGTTTATATAAAATTTTAATAC
* * * *
14383794 -TTTTT-AATTTTTTATAATTTTTTATAAAATTTTAGTAC
1 GTTTTTAAAATTTTTATAAGTTTATATAAAATTTTAATAC
14383832 GTTTTTA
1 GTTTTTA
14383839 TACACTTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
37 17 0.46
38 15 0.41
39 5 0.14
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.60
Consensus pattern (40 bp):
GTTTTTAAAATTTTTATAAGTTTATATAAAATTTTAATAC
Found at i:14387796 original size:51 final size:51
Alignment explanation
Indices: 14387739--14387853 Score: 214
Period size: 50 Copynumber: 2.3 Consensus size: 51
14387729 TGGAAGCCAG
14387739 GAAAACATTTTCCAGAAAATGTTTTCCTAGTTTTACCGTGTTTGGATGCTT
1 GAAAACATTTTCCAGAAAATGTTTTCCTAGTTTTACCGTGTTTGGATGCTT
*
14387790 GAAAACATTTT-CAGAAAATGTTTTCCTGGTTTTACCGTGTTTGGATGCTT
1 GAAAACATTTTCCAGAAAATGTTTTCCTAGTTTTACCGTGTTTGGATGCTT
14387840 GAAAACATTTTCCA
1 GAAAACATTTTCCA
14387854 AAGGGAAAAT
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
50 49 0.79
51 13 0.21
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (51 bp):
GAAAACATTTTCCAGAAAATGTTTTCCTAGTTTTACCGTGTTTGGATGCTT
Found at i:14392405 original size:32 final size:32
Alignment explanation
Indices: 14392339--14392406 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 32
14392329 TTTTTGTTAA
* *
14392339 TGTTGGATTCTAAAATTTTAGTTTATTATATT
1 TGTTGGATTCTAAAATTTTAGTCTATGATATT
*
14392371 TGTTGGATTCTGAAATTATTATGTCT-TGAT-TT
1 TGTTGGATTCTAAAATT-TTA-GTCTATGATATT
14392403 TGTT
1 TGTT
14392407 AGATATTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
32 22 0.71
33 6 0.19
34 3 0.10
ACGTcount: A:0.24, C:0.04, G:0.16, T:0.56
Consensus pattern (32 bp):
TGTTGGATTCTAAAATTTTAGTCTATGATATT
Found at i:14392432 original size:27 final size:27
Alignment explanation
Indices: 14392402--14392474 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
14392392 TGTCTTGATT
14392402 TTGTTAGATATTGATTATGTTTCAAGC
1 TTGTTAGATATTGATTATGTTTCAAGC
*
14392429 TTGTTAGATATTGAGTTTATTATGTTTTAAGC
1 TTGTTAGATATT--G---ATTATGTTTCAAGC
*
14392461 TTGTTGGATATTGA
1 TTGTTAGATATTGA
14392475 AATGATTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 13 0.33
29 1 0.03
30 1 0.03
32 24 0.62
ACGTcount: A:0.25, C:0.04, G:0.21, T:0.51
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTCAAGC
Found at i:14393484 original size:24 final size:23
Alignment explanation
Indices: 14393457--14393514 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
14393447 GCACTTGGAC
* *
14393457 AATATTGTTGTTATCATGTGATGT
1 AATATT-TAGTTATCATATGATGT
*
14393481 AATA-TTAGTTATCATATGGTGT
1 AATATTTAGTTATCATATGATGT
14393503 AATA-TTAGTTAT
1 AATATTTAGTTAT
14393515 GCACTTGGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 26 0.84
23 1 0.03
24 4 0.13
ACGTcount: A:0.31, C:0.03, G:0.17, T:0.48
Consensus pattern (23 bp):
AATATTTAGTTATCATATGATGT
Done.