Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 61 of 444
Found at i:14588903 original size:25 final size:24
Alignment explanation
Indices: 14588798--14588931 Score: 87
Period size: 25 Copynumber: 5.5 Consensus size: 24
14588788 TAGTATTGAG
* *
14588798 TATTAAAAGTATATATATAATATA
1 TATTAAAAATATATACATAATATA
* * * *
14588822 GA-CAAAAATATATGCATAATGTA
1 TATTAAAAATATATACATAATATA
* * * *
14588845 GTATTGAAAGTATTTACATGGGATA-A
1 -TATTAAAAATATATACAT--AATATA
* *
14588871 TATAAAAAATATATGA-ATAATGTGA
1 TATTAAAAATATAT-ACATAATAT-A
14588896 TATTAAAAATATATACATAATATA
1 TATTAAAAATATATACATAATATA
14588920 TA-TAAAAATATA
1 TATTAAAAATATA
14588932 ATATTAAAAA
Statistics
Matches: 80, Mismatches: 22, Indels: 17
0.67 0.18 0.14
Matches are distributed among these distances:
23 28 0.35
24 6 0.08
25 42 0.52
26 2 0.03
27 2 0.03
ACGTcount: A:0.53, C:0.03, G:0.10, T:0.34
Consensus pattern (24 bp):
TATTAAAAATATATACATAATATA
Found at i:14588935 original size:15 final size:15
Alignment explanation
Indices: 14588917--14589000 Score: 52
Period size: 14 Copynumber: 5.5 Consensus size: 15
14588907 TATACATAAT
14588917 ATATATAAAAATATA
1 ATATATAAAAATATA
14588932 ATAT-TAAAAA-ATA
1 ATATATAAAAATATA
14588945 CATATATATATAATATATAA
1 -ATATATA-A-AA-ATAT-A
*
14588965 ATATATACATAATATA
1 ATATATA-AAAATATA
* *
14588981 GTGT-TAAAAA-AT-
1 ATATATAAAAATATA
14588993 ATATATAA
1 ATATATAA
14589001 TACATACACA
Statistics
Matches: 54, Mismatches: 7, Indels: 18
0.68 0.09 0.23
Matches are distributed among these distances:
12 2 0.04
13 8 0.15
14 13 0.24
15 8 0.15
16 4 0.07
17 6 0.11
18 2 0.04
19 10 0.19
20 1 0.02
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (15 bp):
ATATATAAAAATATA
Found at i:14588941 original size:14 final size:12
Alignment explanation
Indices: 14588870--14588971 Score: 57
Period size: 13 Copynumber: 8.2 Consensus size: 12
14588860 ACATGGGATA
14588870 ATATAAAAA-AT
1 ATATAAAAATAT
* *
14588881 ATATGAATAATGT
1 ATAT-AAAAATAT
14588894 GATATTAAAAATAT
1 -ATA-TAAAAATAT
* *
14588908 ATA-CATAATAT
1 ATATAAAAATAT
14588919 ATATAAAAATAT
1 ATATAAAAATAT
14588931 AATATTAAAAA-AT
1 -ATA-TAAAAATAT
* * *
14588944 ACATATATATAT
1 ATATAAAAATAT
*
14588956 AATATATAAATAT
1 -ATATAAAAATAT
14588969 ATA
1 ATA
14588972 CATAATATAG
Statistics
Matches: 69, Mismatches: 13, Indels: 17
0.70 0.13 0.17
Matches are distributed among these distances:
11 17 0.25
12 17 0.25
13 19 0.28
14 15 0.22
15 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (12 bp):
ATATAAAAATAT
Found at i:14588949 original size:27 final size:27
Alignment explanation
Indices: 14588903--14588975 Score: 78
Period size: 25 Copynumber: 2.7 Consensus size: 27
14588893 TGATATTAAA
* * *
14588903 AATATATACATAATATATATAAAAATAT
1 AATATATAAATAA-ATACATATAAATAT
*
14588931 AATAT-TAAA-AAATACATATATATAT
1 AATATATAAATAAATACATATAAATAT
*
14588956 AATATATAAATATATACATA
1 AATATATAAATAAATACATA
14588976 ATATAGTGTT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
25 16 0.42
26 6 0.16
27 11 0.29
28 5 0.13
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (27 bp):
AATATATAAATAAATACATATAAATAT
Found at i:14588950 original size:40 final size:37
Alignment explanation
Indices: 14588895--14588971 Score: 93
Period size: 40 Copynumber: 2.0 Consensus size: 37
14588885 GAATAATGTG
14588895 ATATTAAAAATATATACATA-ATATATATAAAAATATA
1 ATATTAAAAATATATACATATA-ATATATAAAAATATA
* *
14588932 ATATTAAAAAATACATATATATATAATATATAAATATATA
1 ATATT-AAAAAT--ATATACATATAATATATAAAAATATA
14588972 CATAATATAG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
37 5 0.15
38 6 0.18
40 22 0.65
41 1 0.03
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (37 bp):
ATATTAAAAATATATACATATAATATATAAAAATATA
Found at i:14589106 original size:23 final size:23
Alignment explanation
Indices: 14589061--14589106 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
14589051 AATACTTCAT
* *
14589061 AAATATATACATATATATGTTAA
1 AAATAAATACATATATATATTAA
14589084 AAATAAATACATAT-TAATATTAA
1 AAATAAATACATATAT-ATATTAA
14589107 GATGATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATAAATACATATATATATTAA
Found at i:14589189 original size:12 final size:11
Alignment explanation
Indices: 14589172--14589263 Score: 67
Period size: 12 Copynumber: 7.7 Consensus size: 11
14589162 TATAAGTGTA
*
14589172 ATAATAGTAATT
1 ATAATAATAA-T
*
14589184 ATAATACTAAT
1 ATAATAATAAT
14589195 ACTAATAATAAAT
1 A-TAATAAT-AAT
*
14589208 ATAATAATAGT
1 ATAATAATAAT
*
14589219 AGTAAAAATAAAT
1 A-TAATAAT-AAT
*
14589232 ACAATAATAAT
1 ATAATAATAAT
*
14589243 CATAAAAATAAT
1 -ATAATAATAAT
14589255 ATAAATAAT
1 AT-AATAAT
14589264 GTGTACATGA
Statistics
Matches: 64, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
11 10 0.16
12 47 0.73
13 7 0.11
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (11 bp):
ATAATAATAAT
Found at i:14589228 original size:24 final size:23
Alignment explanation
Indices: 14589183--14589263 Score: 83
Period size: 24 Copynumber: 3.4 Consensus size: 23
14589173 TAATAGTAAT
* *
14589183 TATAATACTAATACTAATAATAAA
1 TATAATAATAATA-TAAAAATAAA
*
14589207 TATAATAATAGTAGTAAAAATAAA
1 TATAATAATAATA-TAAAAATAAA
*
14589231 TACAATAATAATCATAAAAAT-AA
1 TATAATAATAAT-ATAAAAATAAA
14589254 TATAAATAAT
1 TAT-AATAAT
14589264 GTGTACATGA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
23 4 0.08
24 43 0.90
25 1 0.02
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (23 bp):
TATAATAATAATATAAAAATAAA
Found at i:14590887 original size:44 final size:45
Alignment explanation
Indices: 14590767--14590888 Score: 140
Period size: 45 Copynumber: 2.7 Consensus size: 45
14590757 TTATTCATAG
* * *
14590767 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTAT
* *
14590812 CTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTG-TGA-
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCT-AT
* * * *
14590856 CTTCAATCTACTCCGCTGAAACTTCAAGGAGAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
14590889 CTACTGTTGC
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
44 28 0.43
45 37 0.57
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTAT
Found at i:14591307 original size:44 final size:44
Alignment explanation
Indices: 14591062--14591394 Score: 165
Period size: 44 Copynumber: 7.6 Consensus size: 44
14591052 TAAATTCAGC
* * * * * *
14591062 CTGTTACCCTACTGTTTAGGGGTTTAAGGTCCATCGCCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTTGAT
* * * ** ** ** *
14591106 CTATTTCCCTACTGCTTAGGGTGATAAGATCTGT-A-AATTCAGT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTTGA-T
** * * **
14591149 CTGTAACCCTATTGCTTAGGGGTTTAAGGCCCATTGCCTTTGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTTGAT
* * * ** ** ** * *
14591193 CTGTTCCCCTACTGCTTAGGGTGATAAGATCTGT-A-AATTCAGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTTGA-T
* *
14591236 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTTGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTTGAT
* ** ** ** * *
14591280 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGT-A-AATTCAGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTTGA-T
* * * *
14591323 CTGTTACCCTACTGCTTAGAGGTTTAAGGCCCATCACCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTTGAT
14591367 CTGTTTCCCTACTGCTTAGGGGGTTAAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAG
14591395 ATCTGTAAAT
Statistics
Matches: 197, Mismatches: 83, Indels: 18
0.66 0.28 0.06
Matches are distributed among these distances:
42 8 0.04
43 77 0.39
44 104 0.53
45 8 0.04
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (44 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTTGAT
Found at i:14591439 original size:87 final size:87
Alignment explanation
Indices: 14591012--14591430 Score: 649
Period size: 87 Copynumber: 4.8 Consensus size: 87
14591002 GGATTTATAG
* *
14591012 CTTCGATCTATTTCCCTACTGCTTAGGGTGATAAGATCTATAAATTCAGCCTGTTACCCTACTGT
1 CTTCGATCTATTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGC
* *
14591077 TTAGGGGTTTAAGGTCCATCGC
66 TTAGGGGTTTAAGGCCCATCAC
* * *
14591099 CTTCGATCTATTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGTCTGTAACCCTATTGC
1 CTTCGATCTATTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGC
**
14591164 TTAGGGGTTTAAGGCCCATTGC
66 TTAGGGGTTTAAGGCCCATCAC
* * *
14591186 CTTTGATCTGTTCCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGC
1 CTTCGATCTATTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGC
14591251 TTAGGGGTTTAAGGCCCATCAC
66 TTAGGGGTTTAAGGCCCATCAC
* * *
14591273 CTTTGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGC
1 CTTCGATCTATTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGC
*
14591338 TTAGAGGTTTAAGGCCCATCAC
66 TTAGGGGTTTAAGGCCCATCAC
* * * * *
14591360 CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGTCTGTTACCCTACTGC
1 CTTCGATCTATTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGC
14591425 TTAGGG
66 TTAGGG
14591431 AGATAAGGCT
Statistics
Matches: 307, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 307 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (87 bp):
CTTCGATCTATTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGC
TTAGGGGTTTAAGGCCCATCAC
Found at i:14598657 original size:15 final size:15
Alignment explanation
Indices: 14598628--14598659 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14598618 CGATAATAAT
14598628 AATAATAATAATATA
1 AATAATAATAATATA
*
14598643 AATAATAATAGTATA
1 AATAATAATAATATA
14598658 AA
1 AA
14598660 ACGATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
AATAATAATAATATA
Found at i:14598671 original size:3 final size:3
Alignment explanation
Indices: 14598620--14598652 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
14598610 AACGAAAACG
14598620 ATA ATA ATA ATA ATA ATA AT- ATAA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
14598653 GTATAAAACG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 24 0.86
4 2 0.07
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14598898 original size:26 final size:26
Alignment explanation
Indices: 14598848--14598899 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14598838 TATATGTATT
*
14598848 AAAATATATACGTAATAATAGAAATA
1 AAAATATATACGTAATAATAAAAATA
* * *
14598874 AAAATATATATGTAGTATTAAAAATA
1 AAAATATATACGTAATAATAAAAATA
14598900 TATACATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.31
Consensus pattern (26 bp):
AAAATATATACGTAATAATAAAAATA
Found at i:14599081 original size:2 final size:2
Alignment explanation
Indices: 14599076--14599102 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14599066 GAATAAAGAA
14599076 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
14599103 CCAAGAACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14599184 original size:48 final size:47
Alignment explanation
Indices: 14599132--14599267 Score: 157
Period size: 50 Copynumber: 2.8 Consensus size: 47
14599122 AATAGTATTG
* * *
14599132 AGTATTAAAAGTATATATATAATATAGACAAAAATATATGCATAATGT
1 AGTATTAAAAGTATATACATAATATATA-AAAAATATATGAATAATGT
* *
14599180 AGTATTGAAAGTATTTACATGAGATAATATAAAAAATATATGAATAATGT
1 AGTATTAAAAGTATATACAT-A-AT-ATATAAAAAATATATGAATAATGT
*
14599230 -GATATTAAAAATATATACATAATATATATAAAAATATA
1 AG-TATTAAAAGTATATACATAATATATA-AAAAATATA
14599268 ATATTAAAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
47 5 0.07
48 28 0.37
49 3 0.04
50 35 0.47
51 4 0.05
ACGTcount: A:0.54, C:0.03, G:0.10, T:0.34
Consensus pattern (47 bp):
AGTATTAAAAGTATATACATAATATATAAAAAATATATGAATAATGT
Found at i:14599239 original size:25 final size:24
Alignment explanation
Indices: 14599134--14599267 Score: 96
Period size: 25 Copynumber: 5.5 Consensus size: 24
14599124 TAGTATTGAG
* *
14599134 TATTAAAAGTATATATATAATATA
1 TATTAAAAATATATACATAATATA
* * * *
14599158 GA-CAAAAATATATGCATAATGTA
1 TATTAAAAATATATACATAATATA
* * *
14599181 GTATTGAAAGTATTTACATGAGATA-A
1 -TATTAAAAATATATACAT-A-ATATA
* *
14599207 TATAAAAAATATATGA-ATAATGTGA
1 TATTAAAAATATAT-ACATAATAT-A
14599232 TATTAAAAATATATACATAATATA
1 TATTAAAAATATATACATAATATA
14599256 TA-TAAAAATATA
1 TATTAAAAATATA
14599268 ATATTAAAAA
Statistics
Matches: 82, Mismatches: 20, Indels: 17
0.69 0.17 0.14
Matches are distributed among these distances:
23 28 0.34
24 7 0.09
25 42 0.51
26 3 0.04
27 2 0.02
ACGTcount: A:0.54, C:0.03, G:0.09, T:0.34
Consensus pattern (24 bp):
TATTAAAAATATATACATAATATA
Found at i:14599277 original size:14 final size:12
Alignment explanation
Indices: 14599206--14599306 Score: 57
Period size: 12 Copynumber: 8.2 Consensus size: 12
14599196 ACATGAGATA
14599206 ATATAAAAA-AT
1 ATATAAAAATAT
* *
14599217 ATATGAATAATGT
1 ATAT-AAAAATAT
14599230 GATATTAAAAATAT
1 -ATA-TAAAAATAT
* *
14599244 ATA-CATAATAT
1 ATATAAAAATAT
14599255 ATATAAAAATAT
1 ATATAAAAATAT
14599267 AATATTAAAAA-AT
1 -ATA-TAAAAATAT
* * *
14599280 ACATATATATAT
1 ATATAAAAATAT
14599292 A-ATATAAAATAT
1 ATATA-AAAATAT
14599304 ATA
1 ATA
14599307 CATAATATGG
Statistics
Matches: 67, Mismatches: 13, Indels: 18
0.68 0.13 0.18
Matches are distributed among these distances:
11 20 0.30
12 21 0.31
13 10 0.15
14 15 0.22
15 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (12 bp):
ATATAAAAATAT
Found at i:14599292 original size:37 final size:39
Alignment explanation
Indices: 14599231--14599306 Score: 104
Period size: 38 Copynumber: 2.0 Consensus size: 39
14599221 GAATAATGTG
*
14599231 ATATTAAAAATATATACATAATAT-ATATAAAA-ATATA
1 ATATTAAAAATACATACATAATATAATATAAAATATATA
*
14599268 ATATTAAAAAATACATATAT-ATATAATATAAAATATATA
1 ATATT-AAAAATACATACATAATATAATATAAAATATATA
14599307 CATAATATGG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 9 0.26
38 20 0.59
39 5 0.15
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (39 bp):
ATATTAAAAATACATACATAATATAATATAAAATATATA
Found at i:14601328 original size:16 final size:16
Alignment explanation
Indices: 14601309--14601339 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14601299 ACAAGGCTTG
14601309 AAAAATGGGTTTGGGT
1 AAAAATGGGTTTGGGT
14601325 AAAAATGGGTTTGGG
1 AAAAATGGGTTTGGG
14601340 ACAGGTTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.39, T:0.29
Consensus pattern (16 bp):
AAAAATGGGTTTGGGT
Found at i:14613157 original size:52 final size:52
Alignment explanation
Indices: 14613079--14613211 Score: 221
Period size: 52 Copynumber: 2.6 Consensus size: 52
14613069 ACATGGAACC
* * *
14613079 AAAGAGGCCTTGGTTTTATTGGTCTTTTCTAAGAAAACTTGGGTGGACTCAG
1 AAAGAGGCCTTGGTTTTATTGGTCTTTTCTAAGAAAACATGGATGGACTCAA
14613131 AAAGAGGCCTTGGTTTTATTGGTCTTTTCTAAGAAAACATGGATGGACTCAA
1 AAAGAGGCCTTGGTTTTATTGGTCTTTTCTAAGAAAACATGGATGGACTCAA
* *
14613183 AAAGAGGCCTTAGTTTTATTGATCTTTTC
1 AAAGAGGCCTTGGTTTTATTGGTCTTTTC
14613212 AAGGTCTGAT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (52 bp):
AAAGAGGCCTTGGTTTTATTGGTCTTTTCTAAGAAAACATGGATGGACTCAA
Found at i:14615951 original size:26 final size:26
Alignment explanation
Indices: 14615915--14615974 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
14615905 TTGCCACAAG
*
14615915 ATGCTTGTGCTTGCGTAGAGATTGAA
1 ATGCCTGTGCTTGCGTAGAGATTGAA
14615941 ATGCCTGTGCTTGCGTAGAGATTGAA
1 ATGCCTGTGCTTGCGTAGAGATTGAA
14615967 ATGCCTGT
1 ATGCCTGT
14615975 TTATGAATCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (26 bp):
ATGCCTGTGCTTGCGTAGAGATTGAA
Found at i:14621171 original size:12 final size:12
Alignment explanation
Indices: 14621154--14621179 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14621144 GAAATTGGCA
14621154 TAGCTTGTGTGT
1 TAGCTTGTGTGT
14621166 TAGCTTGTGTGT
1 TAGCTTGTGTGT
14621178 TA
1 TA
14621180 TCAAGAGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.12, C:0.08, G:0.31, T:0.50
Consensus pattern (12 bp):
TAGCTTGTGTGT
Found at i:14629171 original size:27 final size:27
Alignment explanation
Indices: 14629137--14629188 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
14629127 TGTCTTTTTA
**
14629137 TATTTTTAATAAAATCTTTAAAAAAAT
1 TATTTTTAATAAAATCACTAAAAAAAT
14629164 TATTTTTAATAAAATCACTAAAAAA
1 TATTTTTAATAAAATCACTAAAAAA
14629189 TTTAAATAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (27 bp):
TATTTTTAATAAAATCACTAAAAAAAT
Found at i:14630093 original size:21 final size:21
Alignment explanation
Indices: 14630069--14630116 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
14630059 ACCCCCACTT
14630069 TTCTTTC-ACGTTTTCTTCCTC
1 TTCTTTCTAC-TTTTCTTCCTC
*
14630090 TTCTTTCTTCTTTTCTTCCT-
1 TTCTTTCTACTTTTCTTCCTC
14630110 TT-TTTCT
1 TTCTTTCT
14630117 TGAGTTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 5 0.20
20 2 0.08
21 17 0.68
22 1 0.04
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.67
Consensus pattern (21 bp):
TTCTTTCTACTTTTCTTCCTC
Found at i:14631363 original size:2 final size:2
Alignment explanation
Indices: 14631358--14631387 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
14631348 AATATATGTG
14631358 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14631388 TTGCAGACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:14636870 original size:46 final size:46
Alignment explanation
Indices: 14636820--14636995 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
14636810 TGGTTGAGCA
14636820 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14636866 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
14636911 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14636959 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14636996 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14636976 original size:93 final size:93
Alignment explanation
Indices: 14636817--14636988 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
14636807 GGATGGTTGA
* *
14636817 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14636882 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
14636910 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14636975 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
14636989 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:14644425 original size:46 final size:46
Alignment explanation
Indices: 14644375--14644550 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
14644365 TGGTTGAGCA
14644375 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14644421 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
14644466 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14644514 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14644551 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14644531 original size:93 final size:93
Alignment explanation
Indices: 14644372--14644543 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
14644362 GGATGGTTGA
* *
14644372 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14644437 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
14644465 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14644530 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
14644544 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:14646487 original size:38 final size:38
Alignment explanation
Indices: 14646439--14646617 Score: 195
Period size: 38 Copynumber: 4.6 Consensus size: 38
14646429 CTACTCGTTC
* *
14646439 AAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCG-T
1 AAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
*
14646477 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 AAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
*
14646516 AAATGCCTTCGGG-CTTAGCCCGGATTAGTAACTCGCA
1 AAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
* * * *
14646553 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 -AAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCA
14646594 CAAA-GCCTTCGGGACTTAGCCCGG
1 -AAATGCCTTCGGGACTTAGCCCGG
14646618 ACATCATTCG
Statistics
Matches: 122, Mismatches: 11, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
37 15 0.12
38 51 0.42
39 24 0.20
40 21 0.17
41 11 0.09
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (38 bp):
AAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:14646558 original size:77 final size:79
Alignment explanation
Indices: 14646438--14646618 Score: 221
Period size: 77 Copynumber: 2.3 Consensus size: 79
14646428 GCTACTCGTT
* * *
14646438 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGTAAATGCCTTCGGGA-CTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAAATGCCTTC-GGATCTTAACCCGGA
* *
14646502 TTTAGTAAC-TCGCA
65 TATAGTAACTTAGCA
**
14646516 -AAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCG--CAAATGCCTTCGGATCTTAACCCGG
*
14646578 ATATAGTCACTTAGCA
64 ATATAGTAACTTAGCA
14646594 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14646619 CATCATTCGA
Statistics
Matches: 89, Mismatches: 8, Indels: 11
0.82 0.07 0.10
Matches are distributed among these distances:
75 10 0.11
76 13 0.15
77 39 0.44
78 13 0.15
79 14 0.16
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCA
Found at i:14656746 original size:29 final size:29
Alignment explanation
Indices: 14656713--14656785 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
14656703 GTGACGAGAT
14656713 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
14656742 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
14656771 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
14656786 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:14656801 original size:29 final size:30
Alignment explanation
Indices: 14656713--14656845 Score: 141
Period size: 29 Copynumber: 4.6 Consensus size: 30
14656703 GTGACGAGAT
14656713 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
14656742 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
* ***
14656771 TGGCACTAAGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
* * * **
14656800 TGGCACTATGTGTGCG-GGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGATGCTGGAAAT-ATA
14656829 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
14656846 AATCGAGTAT
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
28 2 0.02
29 87 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGATGCTGGAAATATA
Found at i:14656883 original size:2 final size:2
Alignment explanation
Indices: 14656878--14656910 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14656868 GTGCGTACTC
14656878 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14656911 CTCCGATCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14658463 original size:44 final size:43
Alignment explanation
Indices: 14658313--14658721 Score: 260
Period size: 44 Copynumber: 9.3 Consensus size: 43
14658303 ATGTAGATCA
*
14658313 AAGA-AACAAGATTTGGCATCCCTGTGTTTATAGGGAATAGTTCG
1 AAGATAAC-AGATTTGGCATCCCTGTGTTTATAGGGAACAG-TCG
* * * * *
14658357 AAGATAACAGATCTGACA-CTCCTGTGCTTACAGCGAAGCAGATCG
1 AAGATAACAGATTTGGCATC-CCTGTGTTTATAGGGAA-CAG-TCG
* ** *
14658402 AGGATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTG
1 AAGATAACAG-ATTTGGCATCCCTGTGTTTATAGGGAAC-AGTCG
*
14658445 AAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCG
1 AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAACAG-TCG
* * * * * *
14658489 AAGATAATAGATTTGACA-CTCCTGTGCTTACAGCGAAGCAAATCG
1 AAGATAACAGATTTGGCATC-CCTGTGTTTATAGGGAA-C-AGTCG
* ** *
14658534 AGGATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTG
1 AAGATAACAG-ATTTGGCATCCCTGTGTTTATAGGGAAC-AGTCG
* *
14658577 AAGATAGCAGATTTGGCATCCCTGTTTTTATAGGGAACAGATCG
1 AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAACAG-TCG
* * * * * *
14658621 AAGATAACAGATCTGACA-CTCCTGTGCTTACAGCGATGCAGATCG
1 AAGATAACAGATTTGGCATC-CCTGTGTTTATAGGGA-ACAG-TCG
** ** * *
14658666 AAGATTTCA-ACATGGTATCCCTGTGTTTATAGGGAACAAGTTG
1 AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAAC-AGTCG
* *
14658709 AAGACAGCAGATT
1 AAGATAACAGATT
14658722 CGACATCTTT
Statistics
Matches: 278, Mismatches: 65, Indels: 44
0.72 0.17 0.11
Matches are distributed among these distances:
42 2 0.01
43 38 0.14
44 193 0.69
45 42 0.15
46 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAACAGTCG
Found at i:14658558 original size:132 final size:132
Alignment explanation
Indices: 14658321--14658721 Score: 703
Period size: 132 Copynumber: 3.0 Consensus size: 132
14658311 CAAAGAAACA
* *
14658321 AGATTTGGCATCCCTGTGTTTATAGGGAATAGTTCGAAGATAACAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
14658386 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
14658451 GC
131 GC
* *
14658453 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAATAGATTTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
*
14658518 ACAGCGAAGCAAATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
14658583 GC
131 GC
*
14658585 AGATTTGGCATCCCTGTTTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
* * * * *
14658650 ACAGCGATGCAGATCGAAGATTTCAACATGGTATCCCTGTGTTTATAGGGAACAAGTTGAAGACA
66 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
14658715 GC
131 GC
14658717 AGATT
1 AGATT
14658722 CGACATCTTT
Statistics
Matches: 255, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 255 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:14658773 original size:44 final size:44
Alignment explanation
Indices: 14658716--14658800 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
14658706 TTGAAGACAG
* * *
14658716 CAGATTCGACATCTTTGTATTGTCAGAGAGTAGATCGAAGATAC
1 CAGATTCGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAC
* * *
14658760 CAGATTTGGCATCTCTGTATTGGCATAGAGCAGATCGAAGA
1 CAGATTCGACATCTCTGTATTGGCAGAGAGCAGATCGAAGA
14658801 CGTAGTTGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (44 bp):
CAGATTCGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAC
Found at i:14662965 original size:12 final size:12
Alignment explanation
Indices: 14662948--14662977 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
14662938 AACGCTGTTA
14662948 ATATATGTATAT
1 ATATATGTATAT
14662960 ATATATGTATAT
1 ATATATGTATAT
14662972 ATATAT
1 ATATAT
14662978 TCCATTTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (12 bp):
ATATATGTATAT
Found at i:14665806 original size:13 final size:13
Alignment explanation
Indices: 14665788--14665827 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
14665778 TAATTTTTAT
14665788 TATATATTATATA
1 TATATATTATATA
14665801 TATATATTATTTATA
1 TATATATTA--TATA
*
14665816 TCTATATTATAT
1 TATATATTATAT
14665828 GTTTTAGCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 12 0.50
15 12 0.50
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (13 bp):
TATATATTATATA
Found at i:14665816 original size:17 final size:17
Alignment explanation
Indices: 14665725--14665822 Score: 51
Period size: 17 Copynumber: 6.4 Consensus size: 17
14665715 GTATTTTCAT
14665725 TATATATATTATTTAT-
1 TATATATATTATTTATA
14665741 T-T-TACTA-TATTTA-A
1 TATATA-TATTATTTATA
*
14665755 TCTATTATATTA-TTATA
1 TATA-TATATTATTTATA
* *
14665772 TATGT-T-TAATTT-T-
1 TATATATATTATTTATA
14665785 TAT-TATA-TA-TTATA
1 TATATATATTATTTATA
14665799 TATATATATTATTTATA
1 TATATATATTATTTATA
*
14665816 TCTATAT
1 TATATAT
14665823 TATATGTTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 29
0.65 0.05 0.30
Matches are distributed among these distances:
12 3 0.05
13 6 0.10
14 15 0.24
15 11 0.18
16 9 0.15
17 18 0.29
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (17 bp):
TATATATATTATTTATA
Found at i:14665824 original size:35 final size:35
Alignment explanation
Indices: 14665723--14665827 Score: 94
Period size: 35 Copynumber: 3.0 Consensus size: 35
14665713 ATGTATTTTC
*
14665723 ATTATATATAT-TATTTATTT-TA-CTATATTTAATCT
1 ATTATATATATATA-TTATTTATATCTATA-TT-ATAT
* * *
14665758 ATTATAT-TATTATATATGTTTA-ATTTTTATTATAT
1 ATTATATATA-TATAT-TATTTATATCTATATTATAT
14665793 ATTATATATATATATTATTTATATCTATATTATAT
1 ATTATATATATATATTATTTATATCTATATTATAT
14665828 GTTTTAGCAC
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
34 7 0.12
35 35 0.62
36 11 0.20
37 3 0.05
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (35 bp):
ATTATATATATATATTATTTATATCTATATTATAT
Found at i:14667116 original size:17 final size:17
Alignment explanation
Indices: 14667057--14667116 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
14667047 TAATAAACTT
14667057 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
14667076 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
14667090 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
14667108 AAAATATAA
1 AAAATATAA
14667117 AATATATTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 4 0.11
17 8 0.23
18 7 0.20
19 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:14667657 original size:35 final size:36
Alignment explanation
Indices: 14667599--14667777 Score: 247
Period size: 35 Copynumber: 5.0 Consensus size: 36
14667589 AATCATATCT
*
14667599 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-CTATCATATCTAAGATTGCAATCATA
14667636 TCTAAGATTG-TATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
* * *
14667671 TCTAAGATTGCAATCATATCTCAGATTG-TATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
* *
14667706 TCTAAGATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
*
14667741 TCTAAGATTGCATATCACATCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCATATCTAAGATTGCA-ATCAT
14667778 TGAAGATTAT
Statistics
Matches: 131, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
35 86 0.66
36 30 0.23
37 10 0.08
38 5 0.04
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
Found at i:14667678 original size:53 final size:54
Alignment explanation
Indices: 14667599--14667777 Score: 283
Period size: 53 Copynumber: 3.3 Consensus size: 54
14667589 AATCATATCT
*
14667599 TCTAAGATTGTATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
14667653 TCTAAGATTGCA-ATCATATCTAAGATTGCAATCATATCTCAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
* *
14667706 TCTAAGATTGCA-ATCATATCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTG--TATCATA
14667760 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
14667778 TGAAGATTAT
Statistics
Matches: 117, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
52 15 0.13
53 68 0.58
54 29 0.25
55 5 0.04
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:14667713 original size:88 final size:90
Alignment explanation
Indices: 14667611--14667777 Score: 311
Period size: 88 Copynumber: 1.9 Consensus size: 90
14667601 TAAGATTGTA
*
14667611 TATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCA-ATCATATCTA
1 TATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCATATCACATCTA
14667675 AGATTGCA-ATCATATCTCAGATTG
66 AGATTGCATATCATATCTCAGATTG
14667699 TATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCATATCACATCTA
1 TATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCATATCACATCTA
14667764 AGATTGCATATCAT
66 AGATTGCATATCAT
14667778 TGAAGATTAT
Statistics
Matches: 76, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
88 54 0.71
89 17 0.22
90 5 0.07
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (90 bp):
TATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCATATCACATCTA
AGATTGCATATCATATCTCAGATTG
Found at i:14667785 original size:17 final size:18
Alignment explanation
Indices: 14667599--14667774 Score: 111
Period size: 18 Copynumber: 9.8 Consensus size: 18
14667589 AATCATATCT
* *
14667599 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATAT-ACA
*
14667618 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
14667636 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
14667653 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
14667671 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
* *
14667689 TCTCAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
14667706 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
14667724 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
14667741 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATAT-ACA
14667760 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
14667775 CATTGAAGAT
Statistics
Matches: 144, Mismatches: 4, Indels: 18
0.87 0.02 0.11
Matches are distributed among these distances:
17 47 0.33
18 65 0.45
19 32 0.22
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCATATACA
Found at i:14667785 original size:88 final size:89
Alignment explanation
Indices: 14667602--14667789 Score: 294
Period size: 88 Copynumber: 2.1 Consensus size: 89
14667592 CATATCTTCT
14667602 AAGATTGTATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCAAT
1 AAGATTG-ATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCAAT
* *
14667667 CATATCTAAGATTGCAATCATATCT
65 CACATCTAAGATTGCAATCATATCG
*
14667692 CAGATTG-TATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCATAT
1 AAGATTGATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCA-AT
14667756 CACATCTAAGATTGCATATCAT-T-G
65 CACATCTAAGATTGCA-ATCATATCG
14667780 AAGATT-ATAT
1 AAGATTGATAT
14667790 TTCCATATGA
Statistics
Matches: 91, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
88 62 0.68
89 18 0.20
90 11 0.12
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (89 bp):
AAGATTGATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCAATC
ACATCTAAGATTGCAATCATATCG
Found at i:14668791 original size:12 final size:12
Alignment explanation
Indices: 14668774--14668803 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
14668764 TGCAAATGGA
14668774 ATATATATATAC
1 ATATATATATAC
14668786 ATATATATATAC
1 ATATATATATAC
14668798 ATATAT
1 ATATAT
14668804 TAACAGCGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATATATATAC
Found at i:14671662 original size:45 final size:45
Alignment explanation
Indices: 14671602--14671906 Score: 190
Period size: 44 Copynumber: 6.8 Consensus size: 45
14671592 AGGATAATGG
* * *
14671602 CTTCAATTTGCTTCACCGTAACTTCAGGAAGACAAGATCTACTGT
1 CTTCAATCTGCTTCACTGTAACTTCAGGAAGACAAGATCTACTAT
* ** * * * * *
14671647 CTTCAATCTGTTTCACTACAA-TCTCAGGGAGGCAAG-GCTAGTGT
1 CTTCAATCTGCTTCACTGTAACT-TCAGGAAGACAAGATCTACTAT
* * *
14671691 CTTCAATCTCCTTCACTGTAACTTCAGAAAGACAAAATCTACTAT
1 CTTCAATCTGCTTCACTGTAACTTCAGGAAGACAAGATCTACTAT
* * * * * * **
14671736 CTTCAGTCTGCTCCACTGCAAAC-TCAGGGAGGCAAG-GCTGGTAT
1 CTTCAATCTGCTTCACTG-TAACTTCAGGAAGACAAGATCTACTAT
* * * * *
14671780 CTTCGATCTGATTCACTGCAACTTCAGAAAGACAAGATCTACTTT
1 CTTCAATCTGCTTCACTGTAACTTCAGGAAGACAAGATCTACTAT
* * * * * * * **
14671825 CTTCAGTCTGCTCCGCTGCAAAC-TCAGGGAGGCAAGGT-TGGTAT
1 CTTCAATCTGCTTCACTG-TAACTTCAGGAAGACAAGATCTACTAT
* * *
14671869 CTTCAATCTACTTCACTGCAACTTCAAGAAGACAAGAT
1 CTTCAATCTGCTTCACTGTAACTTCAGGAAGACAAGAT
14671907 TTGCTGAATT
Statistics
Matches: 187, Mismatches: 65, Indels: 17
0.70 0.24 0.06
Matches are distributed among these distances:
43 6 0.03
44 90 0.48
45 85 0.45
46 6 0.03
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (45 bp):
CTTCAATCTGCTTCACTGTAACTTCAGGAAGACAAGATCTACTAT
Found at i:14671724 original size:89 final size:89
Alignment explanation
Indices: 14671602--14671906 Score: 405
Period size: 89 Copynumber: 3.4 Consensus size: 89
14671592 AGGATAATGG
* * * * * * * * *
14671602 CTTCAATTTGCTTCACCGTAACTTCAGGAAGACAAGATCTACTGTCTTCAATCTGTTTCACTACA
1 CTTCAATCTGCTTCACTGCAACTTCAGAAAGACAAGATCTACTATCTTCAGTCTGCTCCACTGCA
* * *
14671667 ATCTCAGGGAGGCAAGGCTAGTGT
66 AACTCAGGGAGGCAAGGCTGGTAT
* * *
14671691 CTTCAATCTCCTTCACTGTAACTTCAGAAAGACAAAATCTACTATCTTCAGTCTGCTCCACTGCA
1 CTTCAATCTGCTTCACTGCAACTTCAGAAAGACAAGATCTACTATCTTCAGTCTGCTCCACTGCA
14671756 AACTCAGGGAGGCAAGGCTGGTAT
66 AACTCAGGGAGGCAAGGCTGGTAT
* * * *
14671780 CTTCGATCTGATTCACTGCAACTTCAGAAAGACAAGATCTACTTTCTTCAGTCTGCTCCGCTGCA
1 CTTCAATCTGCTTCACTGCAACTTCAGAAAGACAAGATCTACTATCTTCAGTCTGCTCCACTGCA
*
14671845 AACTCAGGGAGGCAAGGTTGGTAT
66 AACTCAGGGAGGCAAGGCTGGTAT
*
14671869 CTTCAATCTACTTCACTGCAACTTCA-AGAAGACAAGAT
1 CTTCAATCTGCTTCACTGCAACTTCAGA-AAGACAAGAT
14671907 TTGCTGAATT
Statistics
Matches: 191, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
88 1 0.01
89 190 0.99
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (89 bp):
CTTCAATCTGCTTCACTGCAACTTCAGAAAGACAAGATCTACTATCTTCAGTCTGCTCCACTGCA
AACTCAGGGAGGCAAGGCTGGTAT
Found at i:14673153 original size:52 final size:52
Alignment explanation
Indices: 14673097--14673201 Score: 174
Period size: 52 Copynumber: 2.0 Consensus size: 52
14673087 TTTATTTTTA
14673097 TTTTTTTACAAGGTCTCAAAGCGCCCTTTGTGAGTTTTCACCTTGGCCCCTT
1 TTTTTTTACAAGGTCTCAAAGCGCCCTTTGTGAGTTTTCACCTTGGCCCCTT
* * * *
14673149 TTTTTTTAGAAGGTCTCAAAGCGCCCTTTGTGGGTTTTCACTTTGGCCTCTT
1 TTTTTTTACAAGGTCTCAAAGCGCCCTTTGTGAGTTTTCACCTTGGCCCCTT
14673201 T
1 T
14673202 CCCATTTTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (52 bp):
TTTTTTTACAAGGTCTCAAAGCGCCCTTTGTGAGTTTTCACCTTGGCCCCTT
Found at i:14673408 original size:27 final size:27
Alignment explanation
Indices: 14673370--14673423 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
14673360 TTTGTATGGG
14673370 AAAGATCTTTTTCAATACTAGGTCCCC
1 AAAGATCTTTTTCAATACTAGGTCCCC
14673397 AAAGATCTTTTTCAATACTAGGTCCCC
1 AAAGATCTTTTTCAATACTAGGTCCCC
14673424 CTCATGAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (27 bp):
AAAGATCTTTTTCAATACTAGGTCCCC
Found at i:14683352 original size:28 final size:27
Alignment explanation
Indices: 14683309--14683414 Score: 90
Period size: 28 Copynumber: 3.7 Consensus size: 27
14683299 GAAATCAGAG
14683309 TTAA-CTGGGCCTTAGCCCATATCAATA
1 TTAATCTGGGCC-TAGCCCATATCAATA
*
14683336 TTAATCTGGGCCATAGCCCCT-TACAATA
1 TTAATCTGGGCC-TAGCCCATAT-CAATA
* *
14683364 TCAGAGTATGCTGGGCCTAGCCCATATCAGTA
1 T--TA--AT-CTGGGCCTAGCCCATATCAATA
14683396 TTAATCTGGGCCGTAGCCC
1 TTAATCTGGGCC-TAGCCC
14683415 TATTACAAGT
Statistics
Matches: 64, Mismatches: 6, Indels: 17
0.74 0.07 0.20
Matches are distributed among these distances:
27 12 0.19
28 28 0.44
30 2 0.03
32 14 0.22
33 8 0.12
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (27 bp):
TTAATCTGGGCCTAGCCCATATCAATA
Found at i:14683441 original size:60 final size:60
Alignment explanation
Indices: 14683302--14683422 Score: 172
Period size: 60 Copynumber: 2.0 Consensus size: 60
14683292 CTATTTAGAA
*
14683302 ATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAAT
1 ATCAGAGTAT-ACTGGGCC-TAGCCCATATCAATATTAATCTGGGCCATAGCCCATTACAAT
* * *
14683363 ATCAGAGTATGCTGGGCCTAGCCCATATCAGTATTAATCTGGGCCGTAGCCCTATTACAA
1 ATCAGAGTATACTGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCC-ATTACAA
14683423 GTCGAGATAT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
60 32 0.59
61 21 0.39
62 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (60 bp):
ATCAGAGTATACTGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCCATTACAAT
Found at i:14684849 original size:49 final size:49
Alignment explanation
Indices: 14684776--14685063 Score: 378
Period size: 49 Copynumber: 5.8 Consensus size: 49
14684766 TAGCCGAAGC
* *
14684776 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * *
14684825 AATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * *
14684876 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *
14684925 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * *
14684976 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
14685025 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
14685064 CTTGACCTCA
Statistics
Matches: 204, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
49 119 0.58
50 4 0.02
51 81 0.40
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:14684895 original size:100 final size:100
Alignment explanation
Indices: 14684781--14685064 Score: 541
Period size: 100 Copynumber: 2.8 Consensus size: 100
14684771 GAAGCTATCT
* *
14684781 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
14684846 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
14684881 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
14684946 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
*
14684981 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
14685046 TGCACTTAGTACTACACAC
66 TGCACTTAGTACTACACAC
14685065 TTGACCTCAC
Statistics
Matches: 181, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 181 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:14690639 original size:49 final size:49
Alignment explanation
Indices: 14690563--14690850 Score: 333
Period size: 49 Copynumber: 5.8 Consensus size: 49
14690553 TAGCCGAAGC
* *
14690563 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * * *
14690612 AATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * * *
14690663 TTTCGGGTACGCATAGTAGCCTGCACTTAGCACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
14690712 TATCCGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * **
14690763 TTTCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
14690812 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
14690851 CTTGACCTCA
Statistics
Matches: 195, Mismatches: 40, Indels: 8
0.80 0.16 0.03
Matches are distributed among these distances:
49 114 0.58
50 4 0.02
51 77 0.39
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:14690685 original size:100 final size:100
Alignment explanation
Indices: 14690568--14690851 Score: 514
Period size: 100 Copynumber: 2.8 Consensus size: 100
14690558 GAAGCTATCT
* *
14690568 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
*
14690633 TACACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
* *
14690668 GGTACGCATAGTAGCCTGCACTTAGCACTACACATGCGACCAATTATCCGATACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
14690733 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
*
14690768 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
14690833 TGCACTTAGTACTACACAC
66 TGCACTTAGTACTACACAC
14690852 TTGACCTCAC
Statistics
Matches: 176, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 176 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:14700050 original size:206 final size:206
Alignment explanation
Indices: 14699697--14700402 Score: 1024
Period size: 206 Copynumber: 3.4 Consensus size: 206
14699687 TAGGCCACAG
* * * *
14699697 CATAGCAGATCTCACCTTCAGATGTTTATG-CTGAAGC-AGATCCAAGATGGTTCGGTATCCTTG
1 CATAGCAGATCTCACCTTCAGATGATTA-GACTGAAGCAAGATCCAAGATGATTTGGCATCCTTG
**
14699760 TGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTATACTGAAGCAAAT
65 TGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAAT
* * **
14699825 CTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTAGCATCTTCACTTTGAT
130 CTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAAT
*
14699890 GGAGAGTAGATA
195 GGAGAGCAGATA
*
14699902 CATAGCAGATCTGACCTTCAGATGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
1 CATAGCAGATCTCACCTTCAGATGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
* *
14699967 GCTTACAAGGAACAAATAGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTAAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
14700032 TAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATG
131 TAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATG
14700097 GAGAGCAGATA
196 GAGAGCAGATA
* * * *
14700108 CATAGCAGATCTAACTTTCAGATGATTAGACTGAAGTAAGGTCCAAGATGATTTGGCATCCTTGT
1 CATAGCAGATCTCACCTTCAGATGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
* **
14700173 GCTTATAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTTGCGTGTTTACGCTGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
* * * * * * *
14700238 TAAGATGATTTGTCATCTCTGCT-TTTTCAGAGAACAAATTGAAATTTGGCGTCTCCATCTTCAA
131 TAAGATGATTTGGCATCTCT-ATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCA-CTTCAA
*
14700302 CAGG-GAGCAGATA
194 -TGGAGAGCAGATA
* * ** * *
14700315 CATAGCAGATCTCACCCTCAGATAATTTCACTCAAGCAAGATCCAAGATGATTTGGCATTCTTGT
1 CATAGCAGATCTCACCTTCAGATGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
*
14700380 GCTTACAAGGAACAAATTGAAGA
66 GCTTACAAGGAACAAATCGAAGA
14700403 AGCAGATTTG
Statistics
Matches: 453, Mismatches: 43, Indels: 8
0.90 0.09 0.02
Matches are distributed among these distances:
204 1 0.00
205 33 0.07
206 325 0.72
207 92 0.20
208 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (206 bp):
CATAGCAGATCTCACCTTCAGATGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
TAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATG
GAGAGCAGATA
Found at i:14702384 original size:14 final size:13
Alignment explanation
Indices: 14702361--14702391 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
14702351 TTATTTCGTA
14702361 TTATTATTATTTT
1 TTATTATTATTTT
14702374 TTATGTATTATTTT
1 TTAT-TATTATTTT
14702388 TTAT
1 TTAT
14702392 AAATTATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (13 bp):
TTATTATTATTTT
Found at i:14702384 original size:17 final size:18
Alignment explanation
Indices: 14702360--14702408 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
14702350 TTTATTTCGT
*
14702360 ATTATTATTATTTT-T-T
1 ATTATTATTATTTTATAA
14702376 ATGTATTATT-TTTTATAA
1 AT-TATTATTATTTTATAA
14702394 ATTATTATTATTTTA
1 ATTATTATTATTTTA
14702409 CATTATTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
16 6 0.21
17 15 0.54
18 7 0.25
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
ATTATTATTATTTTATAA
Found at i:14702397 original size:14 final size:14
Alignment explanation
Indices: 14702366--14702399 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
14702356 TCGTATTATT
**
14702366 ATTATTTTTTATGT
1 ATTATTTTTTATAA
14702380 ATTATTTTTTATAA
1 ATTATTTTTTATAA
14702394 ATTATT
1 ATTATT
14702400 ATTATTTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (14 bp):
ATTATTTTTTATAA
Found at i:14707682 original size:28 final size:28
Alignment explanation
Indices: 14707617--14707717 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
14707607 ATAGTGAATC
*
14707617 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
14707646 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
14707674 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
14707704 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14707718 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:14715601 original size:28 final size:28
Alignment explanation
Indices: 14715536--14715636 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
14715526 ATAGTGAATC
*
14715536 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
14715565 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
14715593 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
14715623 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14715637 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:14725740 original size:26 final size:26
Alignment explanation
Indices: 14725707--14725816 Score: 148
Period size: 26 Copynumber: 4.2 Consensus size: 26
14725697 TGATACAAAT
14725707 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
14725733 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14725759 TAATAATGTGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
14725785 TGATAATGGTTTAGGTAAATGTTTCG
1 TGATAATGGGTTAGGTAAATGTTCCA
14725811 TGATAA
1 TGATAA
14725817 GAATTTCATG
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14727298 original size:28 final size:26
Alignment explanation
Indices: 14727256--14727330 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
14727246 AAAAGTAGCT
* * *
14727256 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
* *
14727284 AAATTACTGTTATACCTCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
14727310 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
14727331 GGTTAATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.55
27 1 0.03
28 17 0.43
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:14727475 original size:27 final size:27
Alignment explanation
Indices: 14727434--14727546 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
14727424 GAAGAAGCGT
* *
14727434 TCTGGAGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
14727461 TCTGGTGGCTCTGCCATAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
14727488 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
14727516 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
14727542 TCTGG
1 TCTGG
14727547 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.72
28 16 0.21
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:14729164 original size:206 final size:206
Alignment explanation
Indices: 14728811--14729516 Score: 1024
Period size: 206 Copynumber: 3.4 Consensus size: 206
14728801 TAGGCCGCAG
* * * *
14728811 CATAGCAGATCTCACCTTCAGATGTTTATG-CTGAAGC-AGATCCAAGATGGTTCGGTATCCTTG
1 CATAGCAGATCTCACCTTCAGATGATTA-GACTGAAGCAAGATCCAAGATGATTTGGCATCCTTG
**
14728874 TGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTATACTGAAGCAAAT
65 TGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAAT
* * **
14728939 CTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTAGCATCTTCACTTTGAT
130 CTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAAT
*
14729004 GGAGAGTAGATA
195 GGAGAGCAGATA
*
14729016 CATAGCAGATCTGACCTTCAGATGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
1 CATAGCAGATCTCACCTTCAGATGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
* *
14729081 GCTTACAAGGAACAAATAGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTAAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
14729146 TAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATG
131 TAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATG
14729211 GAGAGCAGATA
196 GAGAGCAGATA
* * *
14729222 CATAGCAGATCTAACCTTCAGATGATTAGACTGAAGTAAGGTCCAAGATGATTTGGCATCCTTGT
1 CATAGCAGATCTCACCTTCAGATGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
* **
14729287 GCTTATAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTTGCGTGTTTACGCTGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
* * * * * * *
14729352 TAAGATGATTTGTCATCTCTGCT-TTTTCAGAGAACAAATTGAAATTTGGCGTCTCCATCTTCAA
131 TAAGATGATTTGGCATCTCT-ATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCA-CTTCAA
*
14729416 CAGG-GAGCAGATA
194 -TGGAGAGCAGATA
* * ** ** *
14729429 CATAGCAGATCTCACCCTCAGATAATTTCACCCAAGCAAGATCCAAGATGATTTGGCATTCTTGT
1 CATAGCAGATCTCACCTTCAGATGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
*
14729494 GCTTACAAGGAACAAATTGAAGA
66 GCTTACAAGGAACAAATCGAAGA
14729517 AGCAGATTTG
Statistics
Matches: 454, Mismatches: 42, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
204 1 0.00
205 33 0.07
206 326 0.72
207 92 0.20
208 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (206 bp):
CATAGCAGATCTCACCTTCAGATGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
TAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATG
GAGAGCAGATA
Found at i:14734428 original size:18 final size:18
Alignment explanation
Indices: 14734397--14734435 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14734387 AATCAAAGAC
*
14734397 TAATGAAATTTAAAAAATA
1 TAATGAAATATAAAAAA-A
14734416 TAAT-AAATATAAAAAAA
1 TAATGAAATATAAAAAAA
14734433 TAA
1 TAA
14734436 ACAATGTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 11 0.58
19 4 0.21
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (18 bp):
TAATGAAATATAAAAAAA
Found at i:14734825 original size:16 final size:16
Alignment explanation
Indices: 14734801--14734843 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 16
14734791 TAATTTTAAA
*
14734801 AAAAAAGAATATACAT
1 AAAAGAGAATATACAT
14734817 AAAAGAGAAATATACAT
1 AAAAGAG-AATATACAT
14734834 AAAAGAGAAT
1 AAAAGAGAAT
14734844 TTTAAGAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.36
17 16 0.64
ACGTcount: A:0.67, C:0.05, G:0.12, T:0.16
Consensus pattern (16 bp):
AAAAGAGAATATACAT
Found at i:14734828 original size:17 final size:17
Alignment explanation
Indices: 14734808--14734842 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
14734798 AAAAAAAAAG
14734808 AATATACATAAAAGAGA
1 AATATACATAAAAGAGA
14734825 AATATACATAAAAGAGA
1 AATATACATAAAAGAGA
14734842 A
1 A
14734843 TTTTAAGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.66, C:0.06, G:0.11, T:0.17
Consensus pattern (17 bp):
AATATACATAAAAGAGA
Found at i:14735610 original size:14 final size:15
Alignment explanation
Indices: 14735591--14735646 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
14735581 AACCTTCAAT
14735591 GATATG-CAATCTTA
1 GATATGACAATCTTA
14735605 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
14735622 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
14735640 GATATGA
1 GATATGA
14735647 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:14735619 original size:17 final size:17
Alignment explanation
Indices: 14735597--14735660 Score: 92
Period size: 17 Copynumber: 3.6 Consensus size: 17
14735587 CAATGATATG
14735597 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
14735614 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
14735632 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
14735649 TGCAATCTTAGA
1 --CAATCTTAGA
14735661 AGATATGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.38
18 16 0.38
19 10 0.24
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:14735635 original size:35 final size:37
Alignment explanation
Indices: 14735589--14735667 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
14735579 ATAACCTTCA
14735589 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
14735625 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
14735661 A-GATATG
1 ATGATATG
14735668 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:14735667 original size:17 final size:19
Alignment explanation
Indices: 14735589--14735660 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
14735579 ATAACCTTCA
14735589 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
14735608 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
14735625 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
14735643 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
14735661 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:14735686 original size:22 final size:22
Alignment explanation
Indices: 14735589--14735683 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
14735579 ATAACCTTCA
14735589 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
14735608 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
14735625 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
14735643 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
14735665 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
14735684 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:14735985 original size:18 final size:19
Alignment explanation
Indices: 14735950--14735986 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14735940 TGTTTCCCTG
*
14735950 ATTTTTTTATATATTTTTA
1 ATTTTTTTATATACTTTTA
14735969 ATTTTTTTA-ATACTTTTA
1 ATTTTTTTATATACTTTTA
14735987 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (19 bp):
ATTTTTTTATATACTTTTA
Found at i:14736722 original size:13 final size:13
Alignment explanation
Indices: 14736704--14736728 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14736694 CTTTTATCGA
14736704 AATTTGAAAACTC
1 AATTTGAAAACTC
14736717 AATTTGAAAACT
1 AATTTGAAAACT
14736729 ATGATCTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (13 bp):
AATTTGAAAACTC
Found at i:14745522 original size:60 final size:60
Alignment explanation
Indices: 14745444--14745580 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 60
14745434 TAGTGTTAAC
* * * *
14745444 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTACAGTATTGGAG-TATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACA--AGTCGAGATATAT
* * *
14745505 TGGGCCTAGCCCATATCAGTATCAATCTGGGTCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
*
14745565 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
14745581 TAACATAGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
59 5 0.08
60 50 0.76
61 11 0.17
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:14749457 original size:44 final size:44
Alignment explanation
Indices: 14749400--14750110 Score: 691
Period size: 44 Copynumber: 16.2 Consensus size: 44
14749390 AATCTAAGAT
* *
14749400 GATTTGGCATCTCTGTATTGTCAGGGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
*
14749444 GATTTAGCGTCTCTGTATTGTCAGAGG-GCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAG-GGAGCAGATCGAAGATAGCA
* * *
14749488 GATTTGGCGTCTCTGTATTGTTAGAGAGCATATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
* * * *
14749532 GATTTGGCGTCTTTGTATTGTCAGAGAGTAGATCGAAGGTAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
14749576 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
*
14749620 GATTTGGCGTCTTTGTATTGTCAGAGG-GCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAG-GGAGCAGATCGAAGATAGCA
14749664 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
* * *
14749708 GATTTGGCGTCTTTGTATTCTCAGAGG-GCAGATTGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAG-GGAGCAGATCGAAGATAGCA
* * *
14749752 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
* * * * * *
14749796 AATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGATATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAG--ATAGCA
* * * * *
14749842 GATTTGGCTTTCACATGT-TTACG-C-TGAAGCAGATCTAAGAT----
1 GATTTGGC-GTCTC-TGTATT--GTCAGGGAGCAGATCGAAGATAGCA
* * *
14749883 GATTTGGCGTCTCTATATTGTCAGAGAGCAAATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
* * * * * * *
14749927 GATTCGGCATCTCTATATTGTTAGAGAGCAAATTGAAGATATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAG--ATAGCA
* * * * * *
14749973 GATTTGGCTTTCACGCGT-TTACG-C-TGAAGCAGATCTAAGAT----
1 GATTTGGC-GTCTC-TGTATT--GTCAGGGAGCAGATCGAAGATAGCA
* ** *
14750014 GATTTGGCGTCTTTGTATTGTCAAAGAGCAGATTGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
* * *
14750058 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGACATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAG--ATAGCA
14750104 GATTTGG
1 GATTTGG
14750111 TTTTCACGTG
Statistics
Matches: 556, Mismatches: 77, Indels: 66
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.00
39 6 0.01
40 33 0.06
41 16 0.03
43 4 0.01
44 411 0.74
45 10 0.02
46 39 0.07
47 28 0.05
48 5 0.01
49 2 0.00
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.30
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
Found at i:14749549 original size:88 final size:88
Alignment explanation
Indices: 14749400--14750110 Score: 775
Period size: 88 Copynumber: 8.1 Consensus size: 88
14749390 AATCTAAGAT
* * * *
14749400 GATTTGGCATCTCTGTATTGTCAGGGAGCAGATCGAAGATAGTAGATTTAGCGTCTCTGTATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
*
14749465 CAGAGGGCAGATCGAAGATAGCA
66 CAGAGAGCAGATCGAAGATAGCA
* * *
14749488 GATTTGGCGTCTCTGTATTGTTAGAGAGCATATCGAAGATAGCAGATTTGGCGTCTTTGTATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
* *
14749553 CAGAGAGTAGATCGAAGGTAGCA
66 CAGAGAGCAGATCGAAGATAGCA
* *
14749576 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
*
14749641 CAGAGGGCAGATCGAAGATAGCA
66 CAGAGAGCAGATCGAAGATAGCA
* * *
14749664 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTCT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
* *
14749729 CAGAGGGCAGATTGAAGATAGCA
66 CAGAGAGCAGATCGAAGATAGCA
* * * *
14749752 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGCATCTCTGTATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
* * *
14749817 CAGAGAGCAAATTGAAGATATAGTA
66 CAGAGAGCAGATCGAAG--ATAGCA
* * * * *
14749842 GATTTGGCTTTCACATGT-TTACG-CTGA-AGCAGATCTAAGAT----GATTTGGCGTCTCTATA
1 GATTTGGC-GTCTC-TGTATT--GTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTA
*
14749900 TTGTCAGAGAGCAAATCGAAGATAGCA
62 TTGTCAGAGAGCAGATCGAAGATAGCA
* * * * * * * * *
14749927 GATTCGGCATCTCTATATTGTTAGAGAGCAAATTGAAGATATAGCAGATTTGGCTTTCACGCGT-
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAG--ATAGCAGATTTGGC-GTCTC-TGTA
* *
14749991 TTACG-CTGA-AGCAGATCTAAGAT----
62 TT--GTCAGAGAGCAGATCGAAGATAGCA
* * * *
14750014 GATTTGGCGTCTTTGTATTGTCAAAGAGCAGATTGAAGATAGCAGATTTGGCATCTCTGTATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
*
14750079 CAGAGAGCAAATCGAAGACATAGCA
66 CAGAGAGCAGATCGAAG--ATAGCA
14750104 GATTTGG
1 GATTTGG
14750111 TTTTCACGTG
Statistics
Matches: 529, Mismatches: 66, Indels: 54
0.82 0.10 0.08
Matches are distributed among these distances:
82 2 0.00
83 9 0.02
84 29 0.05
85 26 0.05
86 4 0.01
87 65 0.12
88 319 0.60
90 28 0.05
91 35 0.07
92 10 0.02
93 2 0.00
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.30
Consensus pattern (88 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
CAGAGAGCAGATCGAAGATAGCA
Found at i:14749637 original size:132 final size:133
Alignment explanation
Indices: 14749400--14750110 Score: 776
Period size: 132 Copynumber: 5.4 Consensus size: 133
14749390 AATCTAAGAT
* * * *
14749400 GATTTGGCATCTCTGTATTGTCAGGGAGCAGATCGAAG-ATAGTAGATTTAGCGTCTCTGTATTG
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGAATAGCAGATTTGGCGTCTCTGTATTG
* *
14749464 TCAGAGG-GCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTTAGAGAGCATATCGAAGAT
66 TCAG-GGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGAT
14749528 AGCA
130 AGCA
* * * * *
14749532 GATTTGGCGTCTTTGTATTGTCAGAGAGTAGATCGAAG-GTAGCAGATTTGGCGTCTCTGTATTG
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGAATAGCAGATTTGGCGTCTCTGTATTG
* *
14749596 TCAGGGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTGTCAGAGGGCAGATCGAAGATA
66 TCAGGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
14749661 GCA
131 GCA
* * * * *
14749664 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAG-ATAGCAGATTTGGCGTCTTTGTATTC
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGAATAGCAGATTTGGCGTCTCTGTATTG
* *
14749728 TCAGAGG-GCAGATTGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGAT
66 TCAG-GGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGAT
*
14749792 AGTA
130 AGCA
* * * * *
14749796 AATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGATATAGTAGATTTGGCTTTCACATGT-
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGA-ATAGCAGATTTGGC-GTCTC-TGTA
* * * * *
14749860 TTACG-C-TGAAGCAGATCTAAGAT----GATTTGGCGTCTCTATATTGTCAGAGAGCAAATCGA
63 TT--GTCAGGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGA
14749919 AGATAGCA
126 AGATAGCA
* * * * * * *
14749927 GATTCGGCATCTCTATATTGTTAGAGAGCAAATTGAAGATATAGCAGATTTGGCTTTCACGCGT-
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGA-ATAGCAGATTTGGC-GTCTC-TGTA
* * * * * *
14749991 TTACG-C-TGAAGCAGATCTAAGAT----GATTTGGCGTCTTTGTATTGTCAAAGAGCAGATTGA
63 TT--GTCAGGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGA
14750050 AGATAGCA
126 AGATAGCA
14750058 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGACATAGCAGATTTGG
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGA-ATAGCAGATTTGG
14750111 TTTTCACGTG
Statistics
Matches: 513, Mismatches: 57, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
131 209 0.41
132 269 0.52
133 2 0.00
134 14 0.03
135 15 0.03
136 4 0.01
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.30
Consensus pattern (133 bp):
GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGAATAGCAGATTTGGCGTCTCTGTATTG
TCAGGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
GCA
Found at i:14749936 original size:131 final size:130
Alignment explanation
Indices: 14749488--14750237 Score: 775
Period size: 131 Copynumber: 5.7 Consensus size: 130
14749478 GAAGATAGCA
* * * *
14749488 GATTTGGCGTCTCTGTATTGTTAGAGAGCATATCGAAGATAGCAGATTTGGCGTCTTTGTATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGT
* * * * * * * *
14749553 CAGAGAGTAGATCGAAG-GTAGCAGATTTGGC-GTCTC-TGTATT--GTCAGGGAGCAGATCGAA
66 CAGAGAGCAAATCGAAGAATAGCAGATTTGGCTTTCACGTGT-TTACG-C-TGAAGCAGATCTAA
14749613 GAT
128 GAT
* * *
14749616 AGCAGATTTGGCGTCTTTGTATTGTCAGAGGGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTA
1 ----GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTA
* * * ** * * *
14749681 TTGTCAGGGAGCAGATCGAAG-ATAGCAGATTTGGC-GTC-TTTGTATT-CTCAGAGGGCAGAT-
62 TTGTCAGAGAGCAAATCGAAGAATAGCAGATTTGGCTTTCACGTGT-TTACGCTGA-AGCAGATC
14749741 TGAAGAT
125 T-AAGAT
* * *
14749748 AGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGCATCTCTGTA
1 ----GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTA
* * *
14749813 TTGTCAGAGAGCAAATTGAAGATATAGTAGATTTGGCTTTCACATGTTTACGCTGAAGCAGATCT
62 TTGTCAGAGAGCAAATCGAAGA-ATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCT
14749878 AAGAT
126 AAGAT
* * * *
14749883 GATTTGGCGTCTCTATATTGTCAGAGAGCAAATCGAAGATAGCAGATTCGGCATCTCTATATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGT
* * *
14749948 TAGAGAGCAAATTGAAGATATAGCAGATTTGGCTTTCACGCGTTTACGCTGAAGCAGATCTAAGA
66 CAGAGAGCAAATCGAAGA-ATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGA
14750013 T
130 T
* * *
14750014 GATTTGGCGTCTTTGTATTGTCAAAGAGCAGATTGAAGATAGCAGATTTGGCATCTCTGTATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGT
* **
14750079 CAGAGAGCAAATCGAAGACATAGCAGATTTGGTTTTCACGTGTTTACATTGAAGCAGATCTAAGA
66 CAGAGAGCAAATCGAAGA-ATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGA
14750144 T
130 T
* * * * * **
14750145 GATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGA-AACAGATTTGGCATCTCCATATTCG
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATT-G
* * * *
14750209 ACGGAGAGTAGATCGAAGACATAGCAGAT
65 TCAGAGAGCAAATCGAAGA-ATAGCAGAT
14750238 CTGACCTTTA
Statistics
Matches: 538, Mismatches: 69, Indels: 23
0.85 0.11 0.04
Matches are distributed among these distances:
130 20 0.04
131 296 0.55
132 186 0.35
134 13 0.02
135 15 0.03
136 8 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (130 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGT
CAGAGAGCAAATCGAAGAATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGAT
Found at i:14750493 original size:78 final size:77
Alignment explanation
Indices: 14750188--14750482 Score: 430
Period size: 78 Copynumber: 3.8 Consensus size: 77
14750178 CGAAGAAACA
** * * * *
14750188 GATTTGGCATCTCCATATTCGACGGAGAGTAGATCGAAGACATAGCAGATCTGACCTTTATTGAA
1 GATTTGGCATCTCTGTATTAGACGG-GAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
14750253 GCAGATCCAAGAT
65 GCAGATCCAAGAT
* * *
14750266 GATTTGGCATCTCTGTATTAGACGAGGAGTAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACG-GGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
14750331 GCAGATCCAAGAT
65 GCAGATCCAAGAT
* *
14750344 GATTTGGCATCTCTGTATTAGACGGGGAGCAGAACAAAGACATAACAGAT-TAGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCAAAGACATAGCAGATCT-GACCTTCATTGA
14750408 AGCAGATCCAAGAT
64 AGCAGATCCAAGAT
*
14750422 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGACATAGCAGATCTCACCTTCAT
1 GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCAAAGACATAGCAGATCTGACCTTCAT
14750483 GTGTTTAGAT
Statistics
Matches: 199, Mismatches: 14, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
77 1 0.01
78 195 0.98
79 3 0.02
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (77 bp):
GATTTGGCATCTCTGTATTAGACGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAAG
CAGATCCAAGAT
Found at i:14750548 original size:45 final size:45
Alignment explanation
Indices: 14750422--14750695 Score: 218
Period size: 45 Copynumber: 6.1 Consensus size: 45
14750412 GATCCAAGAT
* * *
14750422 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAAATCCAAG--ATAACA
* * * * *
14750469 GATCT--CACCTTCATGTGTTTAGATC--GAAGCAAATCCAAGATGACA
1 GATTTGGCATC-TC-TGT-ATTAGA-CAGGGAGCAAATCCAAGATAACA
* * *
14750514 GATTTGGCATCTTTGTATTAGACGGGGAGTAAAT-CAGAGATAACA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAAATCCA-AGATAACA
* * ** *
14750559 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTAAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAAATCCAAGATAACA
* * * *
14750603 AATTTGGCATCTCTGTATTAGACAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAAATCCAAGATAACA
* * * * *
14750648 GATTTGGCGTCTCTGTATTAGACAGGGAACAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAAATCCAAGATAACA
14750693 GAT
1 GAT
14750696 ATTGCCTTCC
Statistics
Matches: 184, Mismatches: 32, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 45 0.24
45 107 0.58
46 4 0.02
47 21 0.11
48 5 0.03
49 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACAGGGAGCAAATCCAAGATAACA
Found at i:14750620 original size:89 final size:90
Alignment explanation
Indices: 14750515--14750692 Score: 252
Period size: 89 Copynumber: 2.0 Consensus size: 90
14750505 AAGATGACAG
* * * *
14750515 ATTTGGCATCTTTGTATTAGACGGGGAGTAAATC-AGAGATAACAGATTTGGCATCTCTGTATTA
1 ATTTGGCATCTCTGTATTAGACAGAGAGCAAATCGA-AGATAACAGATTTGGCATCTCTGTATTA
* * *
14750579 GACGGGGAGCAGATTAAAGA-AGCAA
65 GACAGGGAACAGATCAAAGATAGCAA
* *
14750604 ATTTGGCATCTCTGTATTAGACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAG
1 ATTTGGCATCTCTGTATTAGACAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAG
14750669 ACAGGGAACAGATCAAAGATAGCA
66 ACAGGGAACAGATCAAAGATAGCA
14750693 GATATTGCCT
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
89 73 0.94
90 5 0.06
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (90 bp):
ATTTGGCATCTCTGTATTAGACAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAG
ACAGGGAACAGATCAAAGATAGCAA
Found at i:14750981 original size:19 final size:19
Alignment explanation
Indices: 14750956--14751011 Score: 94
Period size: 19 Copynumber: 2.9 Consensus size: 19
14750946 ATAATATTCA
*
14750956 ATGATATGCAATCTTAGAT
1 ATGATATACAATCTTAGAT
*
14750975 GTGATATACAATCTTAGAT
1 ATGATATACAATCTTAGAT
14750994 ATGATATACAATCTTAGA
1 ATGATATACAATCTTAGA
14751012 AGATATGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATACAATCTTAGAT
Found at i:14751047 original size:21 final size:23
Alignment explanation
Indices: 14751003--14751047 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
14750993 TATGATATAC
*
14751003 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
14751026 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
14751047 A
1 A
14751048 GATACCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:14753078 original size:13 final size:14
Alignment explanation
Indices: 14753060--14753097 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
14753050 TGGTTTATTA
14753060 TTTATTTTTTGG-T
1 TTTATTTTTTGGTT
*
14753073 TTTATTTTGTGGTT
1 TTTATTTTTTGGTT
14753087 TTTATTTTTTG
1 TTTATTTTTTG
14753098 TATGAGTCCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.08, C:0.00, G:0.16, T:0.76
Consensus pattern (14 bp):
TTTATTTTTTGGTT
Found at i:14755021 original size:2 final size:2
Alignment explanation
Indices: 14755014--14755047 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
14755004 TGCAAATGTA
* *
14755014 AT AT AT AT AT AT AT AC AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14755048 TAATAGCATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:14755035 original size:12 final size:12
Alignment explanation
Indices: 14755018--14755047 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
14755008 AATGTAATAT
14755018 ATATATATATAC
1 ATATATATATAC
14755030 ATATATATATAC
1 ATATATATATAC
14755042 ATATAT
1 ATATAT
14755048 TAATAGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATATATATAC
Found at i:14756757 original size:67 final size:67
Alignment explanation
Indices: 14756674--14756808 Score: 270
Period size: 67 Copynumber: 2.0 Consensus size: 67
14756664 TGCACTTTGA
14756674 ATCAAATTTCATGTACAGTTTTGAGTTTTAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
1 ATCAAATTTCATGTACAGTTTTGAGTTTTAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
14756739 AT
66 AT
14756741 ATCAAATTTCATGTACAGTTTTGAGTTTTAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
1 ATCAAATTTCATGTACAGTTTTGAGTTTTAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
14756806 AT
66 AT
14756808 A
1 A
14756809 CTTATTTCAA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (67 bp):
ATCAAATTTCATGTACAGTTTTGAGTTTTAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
AT
Found at i:14757517 original size:30 final size:32
Alignment explanation
Indices: 14757464--14757534 Score: 103
Period size: 31 Copynumber: 2.3 Consensus size: 32
14757454 GTAATTTAAC
*
14757464 AATT-GGTGACCAAAAAAGAAAAAT-TCGAAT
1 AATTGGGTGACCAAAAAAGAAAAATGTCAAAT
14757494 AATTGGGTGACCAAAAAAG-AAAATGTCAAAT
1 AATTGGGTGACCAAAAAAGAAAAATGTCAAAT
*
14757525 AGTTGGGTGA
1 AATTGGGTGA
14757535 TCATTTTGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
30 9 0.24
31 28 0.76
ACGTcount: A:0.48, C:0.08, G:0.23, T:0.21
Consensus pattern (32 bp):
AATTGGGTGACCAAAAAAGAAAAATGTCAAAT
Found at i:14757736 original size:25 final size:25
Alignment explanation
Indices: 14757708--14757757 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
14757698 ATTTTCAGAG
*
14757708 TTAGATTGGATTCATGTGCTATCTT
1 TTAGATTGAATTCATGTGCTATCTT
*
14757733 TTAGTTTGAATTCATGTGCTATCTT
1 TTAGATTGAATTCATGTGCTATCTT
14757758 CCTCTTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.20, C:0.12, G:0.18, T:0.50
Consensus pattern (25 bp):
TTAGATTGAATTCATGTGCTATCTT
Found at i:14760685 original size:12 final size:12
Alignment explanation
Indices: 14760662--14760699 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
14760652 TAAGTCTAAG
*
14760662 AAAATAACAATA
1 AAAATAAAAATA
*
14760674 AATATAAAAATA
1 AAAATAAAAATA
14760686 AAAAT-AAAATA
1 AAAATAAAAATA
14760697 AAA
1 AAA
14760700 CAAATAGACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (12 bp):
AAAATAAAAATA
Found at i:14760685 original size:18 final size:17
Alignment explanation
Indices: 14760662--14760699 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
14760652 TAAGTCTAAG
*
14760662 AAAATAACAATAAATATA
1 AAAATAAAAATAAA-ATA
14760680 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAATA
14760697 AAA
1 AAA
14760700 CAAATAGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAATAAAAATAAAATA
Found at i:14762326 original size:15 final size:15
Alignment explanation
Indices: 14762298--14762385 Score: 60
Period size: 15 Copynumber: 6.0 Consensus size: 15
14762288 AGAAACATAC
14762298 CAATAAAAAGAATAA
1 CAATAAAAAGAATAA
* * *
14762313 AAATAATAACAATAA
1 CAATAAAAAGAATAA
*
14762328 TAATAAAATAG---AA
1 CAATAAAA-AGAATAA
*
14762341 -AATAACAAGAAT-A
1 CAATAAAAAGAATAA
14762354 CTAATAAAAAGAATAA
1 C-AATAAAAAGAATAA
*
14762370 TAATAAAAATGAATAA
1 CAATAAAAA-GAATAA
14762386 ATAAAATAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
11 2 0.04
12 6 0.11
13 3 0.05
15 37 0.66
16 8 0.14
ACGTcount: A:0.70, C:0.05, G:0.06, T:0.19
Consensus pattern (15 bp):
CAATAAAAAGAATAA
Found at i:14762329 original size:3 final size:3
Alignment explanation
Indices: 14762308--14762394 Score: 52
Period size: 3 Copynumber: 28.7 Consensus size: 3
14762298 CAATAAAAAG
* * * * *
14762308 AAT AAA AAT AAT AAC AAT AAT AAT AA- AAT AGAA AAT AAC AAG AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
* * * *
14762353 ACT AAT AAA AAG AAT AAT AAT AAA AAT GAAT AAAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT AAT AAT AA
14762395 ATAAAGAAAA
Statistics
Matches: 63, Mismatches: 17, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
2 4 0.06
3 51 0.81
4 8 0.13
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (3 bp):
AAT
Found at i:14777715 original size:26 final size:26
Alignment explanation
Indices: 14777678--14777813 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
14777668 TGATACAAAT
* *
14777678 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
14777704 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
14777730 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
14777756 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
14777782 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
14777808 TGATAA
1 TGATAA
14777814 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:14779844 original size:136 final size:137
Alignment explanation
Indices: 14779599--14779884 Score: 502
Period size: 136 Copynumber: 2.1 Consensus size: 137
14779589 GAGTAGTCTC
*
14779599 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCTATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
14779664 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
*
14779729 ACTGTTA
131 ACTGCTA
*
14779736 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
14779800 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
14779865 ACTGCTA
131 ACTGCTA
**
14779872 CCTGAATGGGCTT
1 CCCAAATGGGCTT
14779885 AGGCCCAACA
Statistics
Matches: 142, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
136 122 0.86
137 20 0.14
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGCTA
Found at i:14781245 original size:39 final size:39
Alignment explanation
Indices: 14781185--14781259 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
14781175 CTAGTTAGAG
**
14781185 TGGGCTTGGCATAATTGTACATAGTACGATGAGCAGAAT
1 TGGGCTTGGCATAATCCTACATAGTACGATGAGCAGAAT
14781224 TGGGCTTGGCATAATCCTACATAGTACGATGAGCAG
1 TGGGCTTGGCATAATCCTACATAGTACGATGAGCAG
14781260 GATTCGGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (39 bp):
TGGGCTTGGCATAATCCTACATAGTACGATGAGCAGAAT
Found at i:14785437 original size:93 final size:93
Alignment explanation
Indices: 14785325--14785496 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
14785315 CGCCCATAAG
* *
14785325 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
14785390 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
14785418 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
14785483 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
14785497 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:14785493 original size:46 final size:46
Alignment explanation
Indices: 14785318--14785493 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
14785308 TGTAACCCGC
* * *
14785318 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
14785364 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
14785414 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
14785457 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
14785494 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:14785947 original size:30 final size:30
Alignment explanation
Indices: 14785913--14785972 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
14785903 ATTTAATACG
*
14785913 AACTTTGGAAAAATTACACTTTTGTCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
14785943 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
14785973 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:14794266 original size:2 final size:2
Alignment explanation
Indices: 14794259--14794291 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14794249 TCGATCGGAG
14794259 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14794292 GAGTACGCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14794447 original size:28 final size:28
Alignment explanation
Indices: 14794326--14794455 Score: 136
Period size: 29 Copynumber: 4.5 Consensus size: 28
14794316 ACTCGATTTC
** * **
14794326 GCACACTTAGTGCCATGCGATTTAAGCCC
1 GCACACTTAGTGCCAT-ATATTTCAGCAT
* ***
14794355 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTC-AGCAT
14794383 CGCACACTTAGTGCCATATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTT-CAGCAT
14794413 GCACACTTAGTGCCATATATTTCAGCAT
1 GCACACTTAGTGCCATATATTTCAGCAT
14794441 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
14794456 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
28 23 0.27
29 61 0.71
30 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (28 bp):
GCACACTTAGTGCCATATATTTCAGCAT
Found at i:14797132 original size:1 final size:1
Alignment explanation
Indices: 14797128--14797174 Score: 58
Period size: 1 Copynumber: 47.0 Consensus size: 1
14797118 CTTTTTTCTA
* * * *
14797128 TTTTTTTTTTTTATTTTTTTTTCTTTTTCTTTTTTCTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14797175 GAAATAGAAG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.02, C:0.06, G:0.00, T:0.91
Consensus pattern (1 bp):
T
Found at i:14797137 original size:13 final size:12
Alignment explanation
Indices: 14797110--14797174 Score: 78
Period size: 12 Copynumber: 5.4 Consensus size: 12
14797100 GGCCTCTCCA
*
14797110 TTTTTCTTCTTT
1 TTTTTCTTTTTT
* *
14797122 TTTCTATTTTTT
1 TTTTTCTTTTTT
*
14797134 TTTTT-TATTTT
1 TTTTTCTTTTTT
14797145 TTTTTCTTTTTCT
1 TTTTTCTTTTT-T
14797158 TTTTTCTTTTTT
1 TTTTTCTTTTTT
14797170 TTTTT
1 TTTTT
14797175 GAAATAGAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
11 10 0.22
12 23 0.51
13 12 0.27
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (12 bp):
TTTTTCTTTTTT
Found at i:14797147 original size:25 final size:24
Alignment explanation
Indices: 14797119--14797174 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 24
14797109 ATTTTTCTTC
14797119 TTTTTTCTATTTT-TTTTTTTTATTT
1 TTTTTTCT-TTTTCTTTTTTTT-TTT
14797144 TTTTTTCTTTTTCTTTTTTCTTTTT
1 TTTTTTCTTTTTCTTTTTT-TTTTT
14797169 TTTTTT
1 TTTTTT
14797175 GAAATAGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.14
25 23 0.79
26 2 0.07
ACGTcount: A:0.04, C:0.07, G:0.00, T:0.89
Consensus pattern (24 bp):
TTTTTTCTTTTTCTTTTTTTTTTT
Found at i:14803181 original size:17 final size:17
Alignment explanation
Indices: 14803122--14803181 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
14803112 TAATAAATTT
14803122 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
14803141 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
14803155 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
14803173 AAAATATAA
1 AAAATATAA
14803182 AATATATTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 4 0.11
17 8 0.23
18 7 0.20
19 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:14803714 original size:17 final size:18
Alignment explanation
Indices: 14803661--14803821 Score: 213
Period size: 17 Copynumber: 8.9 Consensus size: 18
14803651 AATCATATCT
*
14803661 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
14803680 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
14803698 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
14803715 TCTAAGATTGC-AGTCATA
1 TCTAAGATTGCTA-TCATA
14803733 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
* *
14803750 TCTAAGACTGCAATCATA
1 TCTAAGATTGCTATCATA
14803768 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
14803785 TCTAAGATTGCATATCACA
1 TCTAAGATTGC-TATCATA
14803804 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
14803822 TGAAATTATA
Statistics
Matches: 127, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
17 47 0.37
18 47 0.37
19 33 0.26
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:14803719 original size:35 final size:35
Alignment explanation
Indices: 14803661--14803813 Score: 252
Period size: 35 Copynumber: 4.3 Consensus size: 35
14803651 AATCATATCT
14803661 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
*
14803698 TCTAAGATTGTATCATATCTAAGATTGCAGTCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
14803733 TCTAAGATTGTATCATATCTAAGACTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
14803768 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
14803804 TCTAAGATTG
1 TCTAAGATTG
14803814 CATATCATTG
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
35 85 0.77
36 15 0.14
37 10 0.09
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:14804147 original size:23 final size:22
Alignment explanation
Indices: 14804116--14804181 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 22
14804106 TACCTATTAG
14804116 ATTATTATTATTTTATATATTCTT
1 ATTA-TATTATTTTATATATT-TT
* *
14804140 CTTATATTATATTATATATTTT
1 ATTATATTATTTTATATATTTT
*
14804162 ATTACATATATTTTAT-TATT
1 ATTATAT-TATTTTATATATT
14804182 ATATGATTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 11 0.31
23 22 0.61
24 3 0.08
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (22 bp):
ATTATATTATTTTATATATTTT
Found at i:14804170 original size:14 final size:14
Alignment explanation
Indices: 14804153--14804179 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14804143 ATATTATATT
14804153 ATATATTTTATTAC
1 ATATATTTTATTAC
14804167 ATATATTTTATTA
1 ATATATTTTATTA
14804180 TTATATGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (14 bp):
ATATATTTTATTAC
Found at i:14804180 original size:17 final size:17
Alignment explanation
Indices: 14804160--14804227 Score: 70
Period size: 17 Copynumber: 4.0 Consensus size: 17
14804150 ATTATATATT
14804160 TTATTACATATATTTTA
1 TTATTACATATATTTTA
14804177 TTATT--ATATGATTTATA
1 TTATTACATAT-ATTT-TA
14804194 TTATTACATAT-TTTTA
1 TTATTACATATATTTTA
* *
14804210 TTTTTAAATTATATTTTA
1 TTATTACA-TATATTTTA
14804228 CTATATTTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
15 4 0.09
16 12 0.28
17 18 0.42
18 5 0.12
19 4 0.09
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (17 bp):
TTATTACATATATTTTA
Found at i:14804182 original size:34 final size:33
Alignment explanation
Indices: 14804144--14804223 Score: 106
Period size: 34 Copynumber: 2.4 Consensus size: 33
14804134 ATTCTTCTTA
*
14804144 TATTATATTATATATTTTATTACATATATTTTAT
1 TATTATATTATATATATTATTACATAT-TTTTAT
* *
14804178 TATTATATGATTTATATTATTACATATTTTTAT
1 TATTATATTATATATATTATTACATATTTTTAT
* *
14804211 TTTTAAATTATAT
1 TATTATATTATAT
14804224 TTTACTATAT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
33 15 0.38
34 24 0.62
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (33 bp):
TATTATATTATATATATTATTACATATTTTTAT
Found at i:14804195 original size:14 final size:13
Alignment explanation
Indices: 14804142--14804197 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 13
14804132 ATATTCTTCT
14804142 TATA-TTATATTA
1 TATATTTATATTA
14804154 TATATTT-TATTACA
1 TATATTTATATT--A
14804168 TATATTTTATTATTA
1 TATA-TTTA-TATTA
14804183 TATGATTTATATTA
1 TAT-ATTTATATTA
14804197 T
1 T
14804198 TACATATTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
12 8 0.22
13 2 0.05
14 11 0.30
15 11 0.30
16 1 0.03
17 4 0.11
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (13 bp):
TATATTTATATTA
Found at i:14816742 original size:289 final size:289
Alignment explanation
Indices: 14816210--14816872 Score: 1040
Period size: 289 Copynumber: 2.3 Consensus size: 289
14816200 GATCGAAGAT
* * *
14816210 ATAGATGATTTGGCTTTCATGTGTTTATGTTGAAGTAAGTCTAAGATGATTTGGCATCTCTGTAT
1 ATAGCTGATTTGGCTTTCAAGTGTTTATGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTAT
* *
14816275 TGTCAGAAAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAAACACATAGCAGATCT
66 TGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAAACACATAGCAGATCT
* *
14816340 AACCTTCAGATGTTTATAGTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAC
131 AACCTTCAGATGTTTATAGTGAAGCAGATCCAAGATGACTTGGCATTCTTGTGTTGACAAGGAAC
* * * *
14816405 AACTCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAGCAAATCCAAGAAGATTTGGTGTT
196 AAATCGAGGACATAGCAGATTTAACTCTCAGATGTTCTCAAACAAATCCAAGAAGATTTGGTATT
14816470 CTTGTGTTTACAAGGAACAAATCGAAACC
261 CTTGTGTTTACAAGGAACAAATCGAAACC
* * * * * *
14816499 ATAGCTGATTTGGTTTTTACGTGTTTACGTTGAAGCAAGTCTAAGATAATTTGGCATCTCTGCAT
1 ATAGCTGATTTGGCTTTCAAGTGTTTATGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTAT
*
14816564 TGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCT
66 TGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAAACACATAGCAGATCT
14816629 AACCTTCAGATGTTTATACG-GAAGCAGATCCAAGATGACTTGGCATTCTTGTGTTGACAAGGAA
131 AACCTTCAGATGTTTATA-GTGAAGCAGATCCAAGATGACTTGGCATTCTTGTGTTGACAAGGAA
* * *
14816693 CAAATCGAGGACATAGTAGATTTAACTCTCAGATGTTCTTAAACAAATCCAAGATGATTTGGTAT
195 CAAATCGAGGACATAGCAGATTTAACTCTCAGATGTTCTCAAACAAATCCAAGAAGATTTGGTAT
* *
14816758 TCTTGTGTTTATAAGGAACAAATTGAAACC
260 TCTTGTGTTTACAAGGAACAAATCGAAACC
* * * * * *
14816788 ACAGCTGATTTGGCTTTCAAATGTTTATATTGAAGCAAATCTAGGATGATTTAGCATCTCTGTAT
1 ATAGCTGATTTGGCTTTCAAGTGTTTATGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTAT
*
14816853 TGTCAGAGAACAAATTGAAG
66 TGTCAGAGAACAAATCGAAG
14816873 AGGCAGATTT
Statistics
Matches: 338, Mismatches: 35, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
289 337 1.00
290 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (289 bp):
ATAGCTGATTTGGCTTTCAAGTGTTTATGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTAT
TGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAAACACATAGCAGATCT
AACCTTCAGATGTTTATAGTGAAGCAGATCCAAGATGACTTGGCATTCTTGTGTTGACAAGGAAC
AAATCGAGGACATAGCAGATTTAACTCTCAGATGTTCTCAAACAAATCCAAGAAGATTTGGTATT
CTTGTGTTTACAAGGAACAAATCGAAACC
Found at i:14818571 original size:22 final size:21
Alignment explanation
Indices: 14818546--14818657 Score: 68
Period size: 22 Copynumber: 5.1 Consensus size: 21
14818536 ATGTTGTATG
14818546 TATTTTCATTATATATATTATT
1 TATTTT-ATTATATATATTATT
* *
14818568 TATTTTACTATAT-T-TTATC
1 TATTTTATTATATATATTATT
*
14818587 TATTATATTATTATATATGT-TT
1 TATTTTATTA-TATATAT-TATT
* * *
14818609 AATTTTTATTATATATAATATA
1 TA-TTTTATTATATATATTATT
* *
14818631 TATATATATTATTTATATCTATAT
1 TAT-TTTATTATATATAT-TAT-T
14818655 TAT
1 TAT
14818658 ATGTTTTAGT
Statistics
Matches: 67, Mismatches: 14, Indels: 16
0.69 0.14 0.16
Matches are distributed among these distances:
19 12 0.18
20 4 0.06
21 9 0.13
22 28 0.42
23 11 0.16
24 3 0.04
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.61
Consensus pattern (21 bp):
TATTTTATTATATATATTATT
Done.