Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 62 of 444
Found at i:14818614 original size:41 final size:43
Alignment explanation
Indices: 14818526--14818614 Score: 105
Period size: 41 Copynumber: 2.1 Consensus size: 43
14818516 TTATATTTGC
* * *
14818526 ATTTTACTATATGTTGTATGTATTTTCATTATATATATTATTT
1 ATTTTACTATATGTTGTATCTATTATCATTATATATATTATTA
14818569 ATTTTACTATAT-TT-TATCTATTAT-ATTATTATATATGT-TTA
1 ATTTTACTATATGTTGTATCTATTATCATTA-TATATAT-TATTA
14818610 ATTTT
1 ATTTT
14818615 TATTATATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
40 4 0.10
41 22 0.54
42 3 0.07
43 12 0.29
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.62
Consensus pattern (43 bp):
ATTTTACTATATGTTGTATCTATTATCATTATATATATTATTA
Found at i:14818638 original size:15 final size:15
Alignment explanation
Indices: 14818553--14818659 Score: 66
Period size: 15 Copynumber: 7.5 Consensus size: 15
14818543 ATGTATTTTC
14818553 ATTATATATAT-TAT
1 ATTATATATATATAT
*
14818567 -TTAT-TTTACTATAT
1 ATTATATATA-TATAT
* *
14818581 TTTATCTAT-TATATT
1 ATTATATATATATA-T
* *
14818596 ATTATATATGTTTA-
1 ATTATATATATATAT
*
14818610 ATT-TTTAT-TATAT
1 ATTATATATATATAT
*
14818623 ATAATATATATATAT
1 ATTATATATATATAT
* *
14818638 ATTATTTATATCTAT
1 ATTATATATATATAT
14818653 ATTATAT
1 ATTATAT
14818660 GTTTTAGTAC
Statistics
Matches: 71, Mismatches: 13, Indels: 17
0.70 0.13 0.17
Matches are distributed among these distances:
12 6 0.08
13 11 0.15
14 14 0.20
15 35 0.49
16 5 0.07
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (15 bp):
ATTATATATATATAT
Found at i:14818656 original size:37 final size:37
Alignment explanation
Indices: 14818555--14818659 Score: 97
Period size: 37 Copynumber: 2.8 Consensus size: 37
14818545 GTATTTTCAT
* * * *
14818555 TATATATATTATTTATTTTACTATATTTTATCTATTATA
1 TATATATATTATTTA-TAT-CTATATTATATATAATATA
* * *
14818594 T-TATTATATATGTTTA-ATTTTTATTATATATAATATA
1 TATA-TATAT-TATTTATATCTATATTATATATAATATA
14818631 TATATATATTATTTATATCTATATTATAT
1 TATATATATTATTTATATCTATATTATAT
14818660 GTTTTAGTAC
Statistics
Matches: 52, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
36 5 0.10
37 31 0.60
38 5 0.10
39 6 0.12
40 5 0.10
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (37 bp):
TATATATATTATTTATATCTATATTATATATAATATA
Found at i:14818720 original size:7 final size:7
Alignment explanation
Indices: 14818557--14818712 Score: 83
Period size: 7 Copynumber: 22.4 Consensus size: 7
14818547 ATTTTCATTA
14818557 TATATAT
1 TATATAT
*
14818564 TATTTAT
1 TATATAT
*
14818571 T-T-TAC
1 TATATAT
*
14818576 TATATTT
1 TATATAT
*
14818583 TATCTAT
1 TATATAT
14818590 TATATTAT
1 TATA-TAT
14818598 TATATAT
1 TATATAT
*
14818605 GTTTA-AT
1 -TATATAT
*
14818612 T-TTTAT
1 TATATAT
14818618 TATATAT
1 TATATAT
*
14818625 AATATAT
1 TATATAT
14818632 ATATATAT
1 -TATATAT
*
14818640 TATTTAT
1 TATATAT
*
14818647 ATCTATAT
1 -TATATAT
*
14818655 TATATGT
1 TATATAT
*
14818662 T-T-TAG
1 TATATAT
* *
14818667 TACATGT
1 TATATAT
*
14818674 TAT-TTT
1 TATATAT
14818680 TATATAT
1 TATATAT
14818687 TATATAT
1 TATATAT
14818694 TATATAT
1 TATATAT
14818701 TAATCATAT
1 T-AT-ATAT
14818710 TAT
1 TAT
14818713 TACATATTTA
Statistics
Matches: 111, Mismatches: 25, Indels: 25
0.69 0.16 0.16
Matches are distributed among these distances:
5 6 0.05
6 12 0.11
7 63 0.57
8 25 0.23
9 5 0.05
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (7 bp):
TATATAT
Found at i:14820588 original size:26 final size:26
Alignment explanation
Indices: 14820559--14820612 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14820549 TGGTACAAAT
* *
14820559 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATATTCCA
14820585 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATATTCCA
14820611 TG
1 TG
14820613 TAGCACCCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATATTCCA
Found at i:14821570 original size:136 final size:137
Alignment explanation
Indices: 14821326--14821611 Score: 520
Period size: 136 Copynumber: 2.1 Consensus size: 137
14821316 CATTGGGCCT
** * *
14821326 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGAGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
14821391 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
14821455 CATATGC
131 CATATGC
14821462 AAGCCCATTTGGGTAACAGTGATACTGAGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGAGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
14821527 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
14821592 CATATGC
131 CATATGC
14821599 AAGCCCATTTGGG
1 AAGCCCATTTGGG
14821612 GAGACTACTC
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 122 0.85
137 22 0.15
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGAGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:14823420 original size:26 final size:26
Alignment explanation
Indices: 14823391--14823451 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
14823381 GGGCGTTACA
14823391 TTCCATGATAATGGGTTAGGTAAATG
1 TTCCATGATAATGGGTTAGGTAAATG
*
14823417 TTCCATGATAATGGTTTAGGTAAATG
1 TTCCATGATAATGGGTTAGGTAAATG
14823443 TTCCATGAT
1 TTCCATGAT
14823452 GGGCATTTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.38
Consensus pattern (26 bp):
TTCCATGATAATGGGTTAGGTAAATG
Found at i:14830401 original size:26 final size:26
Alignment explanation
Indices: 14830372--14830479 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
14830362 TGGTACAAAT
14830372 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
14830398 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14830424 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14830450 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14830476 TGAT
1 TGAT
14830480 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14834902 original size:30 final size:31
Alignment explanation
Indices: 14834844--14834902 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
14834834 TACAAAATGA
*
14834844 TCACCCAACTATTTGACATTTTCTTTTTTAG
1 TCACCCAACTATTCGACATTTTCTTTTTTAG
*
14834875 TCACCCAATTATTCGA-ATTTTTCTTTTT
1 TCACCCAACTATTCGACA-TTTTCTTTTT
14834903 CGGTCACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.22, C:0.22, G:0.05, T:0.51
Consensus pattern (31 bp):
TCACCCAACTATTCGACATTTTCTTTTTTAG
Found at i:14834909 original size:31 final size:31
Alignment explanation
Indices: 14834844--14834910 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
14834834 TACAAAATGA
* *
14834844 TCACCCAACTATTTGACATTTTCTTTTTTAG
1 TCACCCAACTATTCGACATTTTCTTTTTCAG
* *
14834875 TCACCCAATTATTCGA-ATTTTTCTTTTTCGG
1 TCACCCAACTATTCGACA-TTTTCTTTTTCAG
14834906 TCACC
1 TCACC
14834911 AGCTGTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 1 0.03
31 30 0.97
ACGTcount: A:0.21, C:0.25, G:0.07, T:0.46
Consensus pattern (31 bp):
TCACCCAACTATTCGACATTTTCTTTTTCAG
Found at i:14841759 original size:115 final size:115
Alignment explanation
Indices: 14841556--14841765 Score: 276
Period size: 115 Copynumber: 1.8 Consensus size: 115
14841546 GGGGTTTGAC
* * * * * * *
14841556 AGTGAGTTACACGGCCTGACGACATGGCCGTGTGACCCACACGGCTTGGACACACGGGTGTGTTC
1 AGTGAGTTACACAGCCTGACAACACGACCGTGTGACCCACACGGCTTAGACACACGAGTGTGTCC
* * *
14841621 TTGGCCGTATAGATCTTAAGACTTAGTTTTGAAATTTTAAGGAAATCGAT
66 TTAGCCGTATAGATCCTAAGACTTAATTTTGAAATTTTAAGGAAATCGAT
* *
14841671 AGTGAGTTACATAGCCTGACAACACGACTGTGTGACCCACACGGCTTAGACACACGAGTGTGTCC
1 AGTGAGTTACACAGCCTGACAACACGACCGTGTGACCCACACGGCTTAGACACACGAGTGTGTCC
* * **
14841736 TTAGCCGTGTGGATCCTGGGACTTAATTTT
66 TTAGCCGTATAGATCCTAAGACTTAATTTT
14841766 TCAAAATTTG
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
115 79 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (115 bp):
AGTGAGTTACACAGCCTGACAACACGACCGTGTGACCCACACGGCTTAGACACACGAGTGTGTCC
TTAGCCGTATAGATCCTAAGACTTAATTTTGAAATTTTAAGGAAATCGAT
Found at i:14842005 original size:13 final size:13
Alignment explanation
Indices: 14841987--14842012 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14841977 CGGAGGTTGC
14841987 ACATGGCCATGTG
1 ACATGGCCATGTG
14842000 ACATGGCCATGTG
1 ACATGGCCATGTG
14842013 TGCCACACGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (13 bp):
ACATGGCCATGTG
Found at i:14842727 original size:12 final size:12
Alignment explanation
Indices: 14842712--14842782 Score: 63
Period size: 12 Copynumber: 5.7 Consensus size: 12
14842702 TTTGTTCATT
14842712 TTTTTATTATTC
1 TTTTTATTATTC
14842724 TTTTTATTAGTATTC
1 TTTTTA-T--TATTC
* *
14842739 TTGTTATT-TTT
1 TTTTTATTATTC
14842750 TGTTTTATTATTC
1 T-TTTTATTATTC
* *
14842763 TTGTTATTATTT
1 TTTTTATTATTC
14842775 TTTTTATT
1 TTTTTATT
14842783 GGTATGTTTC
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
11 3 0.06
12 29 0.62
13 4 0.09
14 1 0.02
15 10 0.21
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.75
Consensus pattern (12 bp):
TTTTTATTATTC
Found at i:14842755 original size:27 final size:26
Alignment explanation
Indices: 14842715--14842783 Score: 90
Period size: 24 Copynumber: 2.7 Consensus size: 26
14842705 GTTCATTTTT
*
14842715 TTATTATTCTTTTTATTAGTATTCTTG
1 TTATTATTTTTTTTATT-GTATTCTTG
14842742 TTATT-TTTTGTTTTA-T-TATTCTTG
1 TTATTATTTT-TTTTATTGTATTCTTG
14842766 TTATTATTTTTTTTATTG
1 TTATTATTTTTTTTATTG
14842784 GTATGTTTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
24 18 0.49
25 5 0.14
26 4 0.11
27 10 0.27
ACGTcount: A:0.16, C:0.04, G:0.07, T:0.72
Consensus pattern (26 bp):
TTATTATTTTTTTTATTGTATTCTTG
Found at i:14843170 original size:16 final size:16
Alignment explanation
Indices: 14843149--14843184 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
14843139 TTACTTGCTA
14843149 CTTTATTATTTTGTTG
1 CTTTATTATTTTGTTG
14843165 CTTTATTATTTTGTTG
1 CTTTATTATTTTGTTG
14843181 CTTT
1 CTTT
14843185 TCTGATCTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.11, C:0.08, G:0.11, T:0.69
Consensus pattern (16 bp):
CTTTATTATTTTGTTG
Found at i:14844465 original size:6 final size:6
Alignment explanation
Indices: 14844446--14844485 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
14844436 CCATTTGTTT
* *
14844446 TATTT- TATTGG TATTTG TATTTG TATTTG TATTTT TATTT
1 TATTTG TATTTG TATTTG TATTTG TATTTG TATTTG TATTT
14844486 TTATGTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.17, C:0.00, G:0.12, T:0.70
Consensus pattern (6 bp):
TATTTG
Found at i:14844496 original size:18 final size:18
Alignment explanation
Indices: 14844443--14844504 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
14844433 AGTCCATTTG
*
14844443 TTTTA-TTTTATTGGTAT
1 TTTTATTTTTATTTGTAT
* *
14844460 TTGTATTTGTATTTGTAT
1 TTTTATTTTTATTTGTAT
14844478 TTTTATTTTTATGTT-TAT
1 TTTTATTTTTAT-TTGTAT
*
14844496 TGTTATTTT
1 TTTTATTTT
14844505 CTTAGACTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
17 4 0.11
18 31 0.84
19 2 0.05
ACGTcount: A:0.16, C:0.00, G:0.11, T:0.73
Consensus pattern (18 bp):
TTTTATTTTTATTTGTAT
Found at i:14844499 original size:7 final size:6
Alignment explanation
Indices: 14844443--14844504 Score: 54
Period size: 6 Copynumber: 10.5 Consensus size: 6
14844433 AGTCCATTTG
** * * *
14844443 TTTTA- TTTTAT TGGTAT TTGTAT TTGTAT TTGTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* *
14844490 GTTTAT TGTTAT TTT
1 TTTTAT TTTTAT TTT
14844505 CTTAGACTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
5 5 0.10
6 43 0.90
ACGTcount: A:0.16, C:0.00, G:0.11, T:0.73
Consensus pattern (6 bp):
TTTTAT
Found at i:14844976 original size:13 final size:13
Alignment explanation
Indices: 14844958--14844996 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
14844948 TATTCATAAT
14844958 AAAACTATCCATC
1 AAAACTATCCATC
14844971 AAAACTATCCATC
1 AAAACTATCCATC
14844984 AAAACTATCCATC
1 AAAACTATCCATC
14844997 TGCGTAACAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAACTATCCATC
Found at i:14848330 original size:27 final size:27
Alignment explanation
Indices: 14848295--14848348 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
14848285 AATAATCAAT
14848295 AACGGTACTCCATGTAGTCTGACTATC
1 AACGGTACTCCATGTAGTCTGACTATC
*
14848322 AACGGTACTTCATGTAGTCTGACTATC
1 AACGGTACTCCATGTAGTCTGACTATC
14848349 TCTGAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (27 bp):
AACGGTACTCCATGTAGTCTGACTATC
Found at i:14858032 original size:2 final size:2
Alignment explanation
Indices: 14858025--14858051 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14858015 TGTAATTAGG
14858025 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
14858052 TTTTCTTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:14861048 original size:25 final size:26
Alignment explanation
Indices: 14860980--14861113 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
14860970 CATGAAATTC
14860980 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
**
14861006 TTATCATGAAACATTTACCTAATACA
1 TTATCATGAAACATTTACCTAACCCA
14861032 TTATCAT-AAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
14861057 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
*
14861082 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
14861108 TTATCA
1 TTATCA
14861114 ATTTGTATCA
Statistics
Matches: 101, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
25 48 0.48
26 53 0.52
ACGTcount: A:0.40, C:0.24, G:0.03, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:14861057 original size:51 final size:51
Alignment explanation
Indices: 14860980--14861113 Score: 234
Period size: 51 Copynumber: 2.6 Consensus size: 51
14860970 CATGAAATTC
14860980 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAATACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAA-ACA
*
14861032 TTATCAT-AAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAAACA
*
14861082 TTATCATGAAACATTTACCTAACCTATTATCA
1 TTATCATGAAACATTTACCTAACCCATTATCA
14861114 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
50 9 0.11
51 63 0.80
52 7 0.09
ACGTcount: A:0.40, C:0.24, G:0.03, T:0.34
Consensus pattern (51 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAAACA
Found at i:14865946 original size:12 final size:12
Alignment explanation
Indices: 14865929--14865959 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
14865919 AGTACTACCT
14865929 CGGCCTCGACCA
1 CGGCCTCGACCA
14865941 CGGCCTCGACCA
1 CGGCCTCGACCA
14865953 CGGCCTC
1 CGGCCTC
14865960 TTCCCCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.52, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:14869188 original size:26 final size:26
Alignment explanation
Indices: 14869152--14869287 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
14869142 CATGAAATTC
14869152 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
**
14869178 TTATCATGAAACATTTACCTAATACA
1 TTATCATGAAACATTTACCTAACCCA
*
14869204 TTATCATAAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
14869230 TTATCATGAAACATTTACCTAACACA
1 TTATCATGAAACATTTACCTAACCCA
*
14869256 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
14869282 TTATCA
1 TTATCA
14869288 ATTTGTATCA
Statistics
Matches: 101, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 101 1.00
ACGTcount: A:0.40, C:0.24, G:0.03, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:14874121 original size:12 final size:12
Alignment explanation
Indices: 14874104--14874134 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
14874094 AGTACTACCT
14874104 CGGCCTCGACCA
1 CGGCCTCGACCA
14874116 CGGCCTCGACCA
1 CGGCCTCGACCA
14874128 CGGCCTC
1 CGGCCTC
14874135 TTCCCCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.52, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:14877351 original size:26 final size:26
Alignment explanation
Indices: 14877315--14877449 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
14877305 CATGAAATTC
14877315 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
**
14877341 TTATCATGAAACATTTACCTAATACA
1 TTATCATGAAACATTTACCTAACCCA
*
14877367 TTATCATAAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
14877393 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
*
14877418 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
14877444 TTATCA
1 TTATCA
14877450 ATTTGTATCA
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 25 0.25
26 76 0.75
ACGTcount: A:0.40, C:0.24, G:0.03, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:14878703 original size:11 final size:10
Alignment explanation
Indices: 14878687--14878745 Score: 50
Period size: 10 Copynumber: 5.7 Consensus size: 10
14878677 ATATTATCCT
14878687 TATTTATATGA
1 TATTTATAT-A
14878698 TATTTATCATA
1 TATTTAT-ATA
*
14878709 TCATTTATATT
1 T-ATTTATATA
*
14878720 TCA-TTATATT
1 T-ATTTATATA
14878730 TATTTATATA
1 TATTTATATA
14878740 T-TTTAT
1 TATTTAT
14878746 TACATATCAT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 6 0.14
10 15 0.35
11 14 0.33
12 8 0.19
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (10 bp):
TATTTATATA
Found at i:14878738 original size:29 final size:29
Alignment explanation
Indices: 14878692--14878770 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 29
14878682 ATCCTTATTT
* * *
14878692 ATATGATATTTA-TCATATCATTTATATTTC
1 ATATCATATTTATTTATAT-ATTT-TATTAC
14878722 AT-T-ATATTTATTTATATATTTTATTAC
1 ATATCATATTTATTTATATATTTTATTAC
14878749 ATATCATATATTA-TTATATATT
1 ATATCATAT-TTATTTATATATT
14878771 ATTCCCTATA
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
27 7 0.16
28 12 0.28
29 19 0.44
30 5 0.12
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.57
Consensus pattern (29 bp):
ATATCATATTTATTTATATATTTTATTAC
Found at i:14879402 original size:93 final size:93
Alignment explanation
Indices: 14879298--14879484 Score: 365
Period size: 93 Copynumber: 2.0 Consensus size: 93
14879288 AGTGATAATG
14879298 TATATTGTATAATGTATATCATTATTTATTATTTTATATTATATGTGCATGGAATGAAAAAGTAG
1 TATATTGTATAATGTATATCATTATTTATTATTTTATATTATATGTGCATGGAATGAAAAAGTAG
14879363 GTATCATGTAGGTTAATTTGTTTAATAT
66 GTATCATGTAGGTTAATTTGTTTAATAT
*
14879391 TATATTGTATAATGTATATCATTATTTATTATTTTATATTATATTTGCATGGAATGAAAAAGTAG
1 TATATTGTATAATGTATATCATTATTTATTATTTTATATTATATGTGCATGGAATGAAAAAGTAG
14879456 GTATCATGTAGGTTAATTTGTTTAATAT
66 GTATCATGTAGGTTAATTTGTTTAATAT
14879484 T
1 T
14879485 GATCCATTGT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48
Consensus pattern (93 bp):
TATATTGTATAATGTATATCATTATTTATTATTTTATATTATATGTGCATGGAATGAAAAAGTAG
GTATCATGTAGGTTAATTTGTTTAATAT
Found at i:14880609 original size:26 final size:26
Alignment explanation
Indices: 14880552--14880657 Score: 162
Period size: 25 Copynumber: 4.2 Consensus size: 26
14880542 TTGATAAAAT
14880552 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14880577 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14880603 TGATAATAGGTTAGGT-AATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14880628 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14880654 TGAT
1 TGAT
14880658 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
25 43 0.59
26 30 0.41
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14880615 original size:51 final size:51
Alignment explanation
Indices: 14880552--14880657 Score: 160
Period size: 51 Copynumber: 2.1 Consensus size: 51
14880542 TTGATAAAAT
* *
14880552 TGATAATGGGTTAGGTAAATGTT-CATGATAATGGGTTAGGTAAATATTTCA
1 TGATAATAGGTTAGGT-AATGTTCCATGATAATGGGTTAGGTAAATATTCCA
* *
14880603 TGATAATAGGTTAGGTAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAATGTTCCATGATAATGGGTTAGGTAAATATTCCA
14880654 TGAT
1 TGAT
14880658 GGGCATTTCA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
50 6 0.12
51 44 0.88
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.38
Consensus pattern (51 bp):
TGATAATAGGTTAGGTAATGTTCCATGATAATGGGTTAGGTAAATATTCCA
Found at i:14882171 original size:26 final size:26
Alignment explanation
Indices: 14882142--14882194 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14882132 TTTACAGTTT
*
14882142 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCATAGG-GATAAATTGACCGAAA
* *
14882168 TACCCATAGGGTTAAATTGACCTAAA
1 TACCCATAGGGATAAATTGACCGAAA
14882194 T
1 T
14882195 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCATAGGGATAAATTGACCGAAA
Found at i:14890481 original size:144 final size:144
Alignment explanation
Indices: 14890266--14890554 Score: 542
Period size: 144 Copynumber: 2.0 Consensus size: 144
14890256 CATCTTGAGG
*
14890266 ACATGGATAAAACCACCTTCATAACATTGTGGAGCACCTTTTGTTACAAGGTAATGCCCTTTGGG
1 ACATGGATAAAACCACCTTCATAACATTGTGGAGCACCTTCTGTTACAAGGTAATGCCCTTTGGG
* *
14890331 TAGAAGAATGTAGGGGTAACATACCAAAGGGCTATGGTGACTTTATTCCACGATATGATGCACAA
66 TAGAAGAATGCAGGGGCAACATACCAAAGGGCTATGGTGACTTTATTCCACGATATGATGCACAA
14890396 AGAAATTGAGGTGT
131 AGAAATTGAGGTGT
14890410 ACATGGATAAAACCACCTTCATAACATTGTGGAGCACCTTCTGTTACAAGGTAATGCCCTTTGGG
1 ACATGGATAAAACCACCTTCATAACATTGTGGAGCACCTTCTGTTACAAGGTAATGCCCTTTGGG
*
14890475 TTGAAGAATGCAGGGGCAACATACCAAAGGGCTATGGTGACTTTATTCCACGATATGATGCACAA
66 TAGAAGAATGCAGGGGCAACATACCAAAGGGCTATGGTGACTTTATTCCACGATATGATGCACAA
14890540 AGAAATTGAGGTGT
131 AGAAATTGAGGTGT
14890554 A
1 A
14890555 TGTTGATGAC
Statistics
Matches: 141, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
144 141 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26
Consensus pattern (144 bp):
ACATGGATAAAACCACCTTCATAACATTGTGGAGCACCTTCTGTTACAAGGTAATGCCCTTTGGG
TAGAAGAATGCAGGGGCAACATACCAAAGGGCTATGGTGACTTTATTCCACGATATGATGCACAA
AGAAATTGAGGTGT
Found at i:14894134 original size:44 final size:44
Alignment explanation
Indices: 14894078--14894529 Score: 688
Period size: 44 Copynumber: 10.3 Consensus size: 44
14894068 TAGATCACCA
* *
14894078 ATAGCCGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAG
1 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
* * *
14894122 ATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGCAAATCGAAG
1 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
*
14894166 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCATATCGAAG
1 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
*
14894210 ATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAG
1 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
14894254 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
1 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
* *
14894298 TTAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAG
1 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
* *
14894342 ATGGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAG
1 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
* * *
14894386 ATGGCAGATTTGGCATCTCTGAATTGTCAGAGACCAGATCGAAG
1 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
** * * *
14894430 ATAATAGATTTGGCGTCTCTGTATTGTCAGAAAGCAGATCAAAG
1 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
* * ** *
14894474 ATAGTAGGTTTGGCATCTCCATATTGTCAGAGAGCAGATCAAAG
1 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
14894518 ATAGCAGATTTG
1 ATAGCAGATTTG
14894530 ACATTCCTGA
Statistics
Matches: 376, Mismatches: 32, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 376 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (44 bp):
ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAG
Found at i:14895621 original size:44 final size:40
Alignment explanation
Indices: 14895573--14895662 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 40
14895563 TATATTATCC
*
14895573 TTATTTATATGATATTTA-T-CATATCATTTATATTTCATTATATT
1 TTATTTATAT-AT-TTTATTACATATCA--TATA-TT-ATTATATA
14895617 TTATTTATATATTTTATTACATATCATATATTATTATATA
1 TTATTTATATATTTTATTACATATCATATATTATTATATA
14895657 TTATTT
1 TTATTT
14895663 CCTATATTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
40 13 0.30
41 2 0.05
42 8 0.19
43 3 0.07
44 17 0.40
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.60
Consensus pattern (40 bp):
TTATTTATATATTTTATTACATATCATATATTATTATATA
Found at i:14896301 original size:101 final size:101
Alignment explanation
Indices: 14896190--14896387 Score: 387
Period size: 101 Copynumber: 2.0 Consensus size: 101
14896180 AAAGTGATAA
14896190 TGTATATTGTATAATGTATATCATTATTTATTATTTTTATATTATATGTGCATGGAATGAAAAAG
1 TGTATATTGTATAATGTATATCATTATTTATTATTTTTATATTATATGTGCATGGAATGAAAAAG
14896255 TAGGTATCATGTAGGTTAATTTGTTTAATATTATAT
66 TAGGTATCATGTAGGTTAATTTGTTTAATATTATAT
*
14896291 TGTATATTGTATAATGTATATCATTATTTATTATTTTTATATTATATTTGCATGGAATGAAAAAG
1 TGTATATTGTATAATGTATATCATTATTTATTATTTTTATATTATATGTGCATGGAATGAAAAAG
14896356 TAGGTATCATGTAGGTTAATTTGTTTAATATT
66 TAGGTATCATGTAGGTTAATTTGTTTAATATT
14896388 GATCCATTGT
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 96 1.00
ACGTcount: A:0.33, C:0.03, G:0.15, T:0.49
Consensus pattern (101 bp):
TGTATATTGTATAATGTATATCATTATTTATTATTTTTATATTATATGTGCATGGAATGAAAAAG
TAGGTATCATGTAGGTTAATTTGTTTAATATTATAT
Found at i:14896437 original size:101 final size:100
Alignment explanation
Indices: 14896227--14896440 Score: 229
Period size: 101 Copynumber: 2.1 Consensus size: 100
14896217 TTATTATTTT
*
14896227 TATATTATATGTGCATGGAATGAAAAAGTAGGTATCATGTAGGTTAATTTGTTTAATATTATATT
1 TATATTATATTTGCATGGAATGAAAAAGTAGGTATCATGTAGGTTAATTTGTTTAATATTATATT
* * * ** ****
14896292 GTATATTGTATAATGTATATCATTATTTATTATTTT
66 GTATATAGTAGAATGCATATCA-TATTTAAAAAAAC
14896328 TATATTATATTTGCATGGAATGAAAAAGTAGGTATCATGTAGGTTAATTTGTTTAATATTGATCC
1 TATATTATATTTGCATGGAATGAAAAAGTAGGTATCATGTAGGTTAATTTGTTTAATATT-AT--
* * *
14896393 ATTGTA-ATAAGTCGAGTGCATCATCA-CTTTAAAAAAAC
63 ATTGTATAT-AGTAGAATGCAT-ATCATATTTAAAAAAAC
14896431 T-T-TTATATTT
1 TATATTATATTT
14896441 TATTTGATCC
Statistics
Matches: 95, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
101 67 0.71
102 3 0.03
103 8 0.08
104 13 0.14
105 4 0.04
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (100 bp):
TATATTATATTTGCATGGAATGAAAAAGTAGGTATCATGTAGGTTAATTTGTTTAATATTATATT
GTATATAGTAGAATGCATATCATATTTAAAAAAAC
Found at i:14902955 original size:35 final size:35
Alignment explanation
Indices: 14902909--14902977 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
14902899 TTTATTTCCT
14902909 TAGTTATTTGTTATTTGTTAGTCCATTTTAATCTA
1 TAGTTATTTGTTATTTGTTAGTCCATTTTAATCTA
14902944 TAGTTATTTGTTATTTGTTAGTCCATTTTAATCT
1 TAGTTATTTGTTATTTGTTAGTCCATTTTAATCT
14902978 TAGGAAATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.22, C:0.09, G:0.12, T:0.58
Consensus pattern (35 bp):
TAGTTATTTGTTATTTGTTAGTCCATTTTAATCTA
Found at i:14904583 original size:21 final size:21
Alignment explanation
Indices: 14904570--14904614 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
14904560 ATTATTCTTA
14904570 TTTATTTTTTTATTTATTTGT
1 TTTATTTTTTTATTTATTTGT
*
14904591 TTTATTTTTTCT-TTTATTTAT
1 TTTATTTTTT-TATTTATTTGT
14904612 TTT
1 TTT
14904615 TGAAGAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.82
Consensus pattern (21 bp):
TTTATTTTTTTATTTATTTGT
Found at i:14904584 original size:12 final size:13
Alignment explanation
Indices: 14904567--14904613 Score: 71
Period size: 12 Copynumber: 3.8 Consensus size: 13
14904557 ACTATTATTC
14904567 TTATTTATTT-TT
1 TTATTTATTTCTT
*
14904579 TTATTTATTTGTT
1 TTATTTATTTCTT
14904592 TTATTT-TTTCTT
1 TTATTTATTTCTT
14904604 TTATTTATTT
1 TTATTTATTT
14904614 TTGAAGAACT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
12 21 0.66
13 11 0.34
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (13 bp):
TTATTTATTTCTT
Found at i:14911949 original size:24 final size:24
Alignment explanation
Indices: 14911917--14911965 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
14911907 TAGAGTTATT
14911917 ATAGTCAAATATACTATGAATTTC
1 ATAGTCAAATATACTATGAATTTC
14911941 ATAGTCAAATATACTATGAATTTC
1 ATAGTCAAATATACTATGAATTTC
14911965 A
1 A
14911966 ACCTATAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.37
Consensus pattern (24 bp):
ATAGTCAAATATACTATGAATTTC
Found at i:14913677 original size:18 final size:18
Alignment explanation
Indices: 14913605--14913677 Score: 92
Period size: 18 Copynumber: 4.1 Consensus size: 18
14913595 CATTTATGGA
* *
14913605 ACTATTCACGTATACGGA
1 ACTATTCACGTATACAGT
* *
14913623 ACTATTCACATATACCGT
1 ACTATTCACGTATACAGT
* *
14913641 ACTATTTACGTATATAGT
1 ACTATTCACGTATACAGT
14913659 ACTATTCACGTATACAGT
1 ACTATTCACGTATACAGT
14913677 A
1 A
14913678 GTTGGGATTG
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (18 bp):
ACTATTCACGTATACAGT
Found at i:14919597 original size:3 final size:3
Alignment explanation
Indices: 14919589--14919613 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
14919579 TTTAAAAATA
14919589 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
14919614 CAAAAACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14926625 original size:17 final size:19
Alignment explanation
Indices: 14926593--14926636 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
14926583 TTAATGTTTC
*
14926593 TTTATAATTTATTATAA-T
1 TTTATAATTAATTATAAGT
14926611 TTTAT-ATTAATTATAAGTT
1 TTTATAATTAATTATAAG-T
14926630 TTTATAA
1 TTTATAA
14926637 AATTTTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 10 0.45
18 5 0.23
19 6 0.27
20 1 0.05
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
TTTATAATTAATTATAAGT
Found at i:14926702 original size:17 final size:18
Alignment explanation
Indices: 14926674--14926707 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14926664 TAAAAAATAG
14926674 AATTTATTATATATTTAA
1 AATTTATTATATATTTAA
14926692 AATTT-TTATATATTTA
1 AATTTATTATATATTTA
14926708 TAAGCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
AATTTATTATATATTTAA
Found at i:14926768 original size:19 final size:19
Alignment explanation
Indices: 14926731--14926769 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14926721 TTTTTTACAA
*
14926731 TAATTTTATACTTTTATAT
1 TAATTTTATACTTTAATAT
14926750 TAATTTTAATA-TTTAATAT
1 TAATTTT-ATACTTTAATAT
14926769 T
1 T
14926770 TTTATAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (19 bp):
TAATTTTATACTTTAATAT
Found at i:14926777 original size:18 final size:18
Alignment explanation
Indices: 14926756--14926798 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
14926746 ATATTAATTT
*
14926756 TAATATTTAATA-TTTTTA
1 TAAT-TTTAATACATTTTA
14926774 TAATTTTAATACATTTTA
1 TAATTTTAATACATTTTA
14926792 TAATTTT
1 TAATTTT
14926799 TAATTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TAATTTTAATACATTTTA
Found at i:14926791 original size:27 final size:26
Alignment explanation
Indices: 14926729--14926805 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 26
14926719 GGTTTTTTAC
14926729 AATAATTTTATACTTTTATATTAATTTT
1 AATAATTTTATA-TTTT-TATTAATTTT
*
14926757 AAT-ATTTAATATTTTTA-TAATTTT
1 AATAATTTTATATTTTTATTAATTTT
14926781 AATACATTTTATAATTTTTAATTAA
1 AATA-ATTTTAT-ATTTTT-ATTAA
14926806 AAAAATATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
24 10 0.24
25 2 0.05
26 10 0.24
27 13 0.31
28 4 0.10
29 3 0.07
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (26 bp):
AATAATTTTATATTTTTATTAATTTT
Found at i:14927351 original size:1 final size:1
Alignment explanation
Indices: 14927345--14927369 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
14927335 ATAAGAAACC
14927345 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
14927370 GGTTCTAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:14929606 original size:60 final size:60
Alignment explanation
Indices: 14929509--14929628 Score: 213
Period size: 60 Copynumber: 2.0 Consensus size: 60
14929499 AGGTATGTTC
* * *
14929509 ACTTTCCAAGATTTCCATGTATTTAGCGGGTCTTTGGACGATCATAACCCCATACCCATT
1 ACTTTCCAAGATTTCCATGTATTTAGCAGGTCCTTGGAAGATCATAACCCCATACCCATT
14929569 ACTTTCCAAGATTTCCATGTATTTAGCAGGTCCTTGGAAGATCATAACCCCATACCCATT
1 ACTTTCCAAGATTTCCATGTATTTAGCAGGTCCTTGGAAGATCATAACCCCATACCCATT
14929629 TCTGTATATG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.33
Consensus pattern (60 bp):
ACTTTCCAAGATTTCCATGTATTTAGCAGGTCCTTGGAAGATCATAACCCCATACCCATT
Found at i:14933314 original size:2 final size:2
Alignment explanation
Indices: 14933307--14933350 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
14933297 AAGCTTACTA
14933307 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14933349 AT
1 AT
14933351 TTTTACTTCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14935800 original size:30 final size:31
Alignment explanation
Indices: 14935766--14935833 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
14935756 AGCAACTTGT
*
14935766 AACTTTTTAA-AATTGAGTGACCAAATTATA
1 AACTTTTTAATAATTGAATGACCAAATTATA
* * *
14935796 AACTTATTAATAGTTGAATGATCAAATTATA
1 AACTTTTTAATAATTGAATGACCAAATTATA
14935827 AACTTTT
1 AACTTTT
14935834 CGGTCCTACA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 9 0.28
31 23 0.72
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (31 bp):
AACTTTTTAATAATTGAATGACCAAATTATA
Found at i:14938910 original size:25 final size:25
Alignment explanation
Indices: 14938880--14938944 Score: 94
Period size: 28 Copynumber: 2.5 Consensus size: 25
14938870 CGAACCCGTG
14938880 ATTAAAATTTCAAGAAAATTAATAA
1 ATTAAAATTTCAAGAAAATTAATAA
14938905 ATTAAAACTATTTCAAGAAAATTAATAA
1 ATT-AAA--ATTTCAAGAAAATTAATAA
*
14938933 ATTAAAACTTCA
1 ATTAAAATTTCA
14938945 CCCTAGGGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
25 8 0.22
26 3 0.08
27 3 0.08
28 22 0.61
ACGTcount: A:0.57, C:0.08, G:0.03, T:0.32
Consensus pattern (25 bp):
ATTAAAATTTCAAGAAAATTAATAA
Found at i:14938920 original size:28 final size:28
Alignment explanation
Indices: 14938886--14938941 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
14938876 CGTGATTAAA
14938886 ATTTCAAGAAAATTAATAAATTAAAACT
1 ATTTCAAGAAAATTAATAAATTAAAACT
14938914 ATTTCAAGAAAATTAATAAATTAAAACT
1 ATTTCAAGAAAATTAATAAATTAAAACT
14938942 TCACCCTAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.32
Consensus pattern (28 bp):
ATTTCAAGAAAATTAATAAATTAAAACT
Found at i:14944731 original size:40 final size:40
Alignment explanation
Indices: 14944654--14944731 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
14944644 AATAAATCGG
* *
14944654 GTATTAGCGGCGTTTTTTCAAAAACGCCGCTATAGATTGA
1 GTATTAGCGGCGTTTTTTCAAAAACGCCACTAAAGATTGA
*
14944694 GTATTAGCGGCGTTTTTAT-AAAAACGCTACTAAAGATT
1 GTATTAGCGGCGTTTTT-TCAAAAACGCCACTAAAGATT
14944732 AAGCCGAACG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 33 0.97
41 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (40 bp):
GTATTAGCGGCGTTTTTTCAAAAACGCCACTAAAGATTGA
Found at i:14944961 original size:154 final size:153
Alignment explanation
Indices: 14944654--14944992 Score: 429
Period size: 154 Copynumber: 2.2 Consensus size: 153
14944644 AATAAATCGG
* * *
14944654 GTATTAGCGGCGTTTTTTCAAAAACGCCGCTATAGATTGAGTATTAGCGGCGTTTTTATAAAAAC
1 GTATTAGCGGCGTTTTTTCAAAAACGCCGCTATAGATCGAGTATTAGCGGCGTTTGTACAAAAAC
* *
14944719 GCTACTAAAGATTAAGCCGAACGACGTCGTTTATTGCGAGCTTCAGTGGCAATAGCGGCGCTTCA
66 GCTACTAAAGATTAAGCAGAACGACGTCGTTTATTGCGAGCTTCAGTGGCAATAGCAGCGCTTCA
*
14944784 CCAAAACGCCACTATAGGTTTGA
131 CCAAAACGCCACTATAGGATTGA
* * *
14944807 GTATTAGCGGCG-TTTTT-AAGGAAGCGCCGCTATAGGTCGACT-TATAGCGGCGTTTGTACAAA
1 GTATTAGCGGCGTTTTTTCAA--AAACGCCGCTATAGATCGAGTAT-TAGCGGCGTTTGTACAAA
* *
14944869 AACGCTGCTAAAAGATTAAGCAGAACGGCGTCGTTTATT-CTGAGCTTCAGTGGCAATAGCAGCG
63 AACGCTACT-AAAGATTAAGCAGAACGACGTCGTTTATTGC-GAGCTTCAGTGGCAATAGCAGCG
* **
14944933 TTTC-CTCAAAAACGCTGCTATA-GATTGA
126 CTTCAC-C-AAAACGCCACTATAGGATTGA
* *
14944961 GTATTAGCGGTGCTTTTTCAAAAACGCCGCTA
1 GTATTAGCGGCGTTTTTTCAAAAACGCCGCTA
14944993 AGGATTTGGG
Statistics
Matches: 161, Mismatches: 16, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
151 2 0.01
152 6 0.04
153 55 0.34
154 79 0.49
155 17 0.11
156 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (153 bp):
GTATTAGCGGCGTTTTTTCAAAAACGCCGCTATAGATCGAGTATTAGCGGCGTTTGTACAAAAAC
GCTACTAAAGATTAAGCAGAACGACGTCGTTTATTGCGAGCTTCAGTGGCAATAGCAGCGCTTCA
CCAAAACGCCACTATAGGATTGA
Found at i:14945031 original size:41 final size:42
Alignment explanation
Indices: 14944980--14945097 Score: 168
Period size: 41 Copynumber: 2.8 Consensus size: 42
14944970 GTGCTTTTTC
*
14944980 AAAAACGCCGCTAAGGATTTGGGTTTTAGTGGCGTTTTTAT-
1 AAAAAGGCCGCTAAGGATTTGGGTTTTAGTGGCGTTTTTATA
14945021 AAAAAGGCCGCTAAGGATTTGGGTTTTAGTGGCGTTTTTATAA
1 AAAAAGGCCGCTAAGGATTTGGGTTTTAGTGGCGTTTTTAT-A
* * *
14945064 AAAAAGGCCGC-AATAGATTTGAGTTTTAGCGGCG
1 AAAAAGGCCGCTAA-GGATTTGGGTTTTAGTGGCG
14945098 CTTATTGGAA
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
41 40 0.57
42 2 0.03
43 28 0.40
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.32
Consensus pattern (42 bp):
AAAAAGGCCGCTAAGGATTTGGGTTTTAGTGGCGTTTTTATA
Found at i:14945682 original size:28 final size:29
Alignment explanation
Indices: 14945630--14945684 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
14945620 TTTAACCCCT
* *
14945630 AAACCCATAAACTATAGACCTTAAATTTG
1 AAACCCATAAACTATAAACCCTAAATTTG
14945659 AAACCC-TAAACTATAAACCCTAAATT
1 AAACCCATAAACTATAAACCCTAAATT
14945685 AATGACACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.47, C:0.24, G:0.04, T:0.25
Consensus pattern (29 bp):
AAACCCATAAACTATAAACCCTAAATTTG
Found at i:14945935 original size:16 final size:14
Alignment explanation
Indices: 14945914--14945951 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 14
14945904 AGGTTTATGC
14945914 ATGGTTTAGGGTATAT
1 ATGGTTTAGGGT-T-T
14945930 ATGGTTTAGGGTTT
1 ATGGTTTAGGGTTT
14945944 ATGGTTTA
1 ATGGTTTA
14945952 TATGGATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 9 0.41
15 1 0.05
16 12 0.55
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (14 bp):
ATGGTTTAGGGTTT
Found at i:14946232 original size:22 final size:22
Alignment explanation
Indices: 14946167--14946248 Score: 78
Period size: 22 Copynumber: 3.8 Consensus size: 22
14946157 GTTGAGGGTC
* **
14946167 TAGGGGTTAAGGGGATATGGTT
1 TAGGGATTAAGGGTTTATGGTT
* **
14946189 TAGGGATTAA-TGTTTAAAGTT
1 TAGGGATTAAGGGTTTATGGTT
14946210 TAGGGATTAAGGGTTTATGGTT
1 TAGGGATTAAGGGTTTATGGTT
*
14946232 TAAGG-TTCAAGGGTTTA
1 TAGGGATT-AAGGGTTTA
14946249 GGGGTTAATG
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
21 18 0.38
22 30 0.62
ACGTcount: A:0.27, C:0.01, G:0.34, T:0.38
Consensus pattern (22 bp):
TAGGGATTAAGGGTTTATGGTT
Found at i:14946251 original size:29 final size:28
Alignment explanation
Indices: 14946185--14946258 Score: 69
Period size: 29 Copynumber: 2.6 Consensus size: 28
14946175 AAGGGGATAT
*
14946185 GGTTTAGGGATTAATGTTTAAAGTTTAG
1 GGTTTAGGGATTAATGTTTAAAGTTAAG
* * *
14946213 GGATTAAGGG-TTTATGGTTTAAGGTTCAAG
1 GG-TTTAGGGATTAAT-GTTTAAAGTT-AAG
*
14946243 GGTTTAGGGGTTAATG
1 GGTTTAGGGATTAATG
14946259 GGACATGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
28 6 0.17
29 22 0.61
30 8 0.22
ACGTcount: A:0.26, C:0.01, G:0.34, T:0.39
Consensus pattern (28 bp):
GGTTTAGGGATTAATGTTTAAAGTTAAG
Found at i:14946271 original size:80 final size:80
Alignment explanation
Indices: 14946161--14946345 Score: 253
Period size: 80 Copynumber: 2.3 Consensus size: 80
14946151 TTAAAGGTTG
* * * *
14946161 AGGGTCTAGGGGTTAAGGGGATATGGTTTAGGGATTAATGTTTAAAGTTTAGGGATTAAGGGTTT
1 AGGGTTTAGGGGTTAAGGGGACATGATTTAGGGATTAATGTTTAAAGTTTAGGGATTAAGGGTTA
14946226 ATGGTTTAAGGTTCA
66 ATGGTTTAAGGTTCA
* * * * *
14946241 AGGGTTTAGGGGTTAATGGGACATGATTTAGGGTTTAGTGTTTAAATTTTAGTGATTAAGGGTTA
1 AGGGTTTAGGGGTTAAGGGGACATGATTTAGGGATTAATGTTTAAAGTTTAGGGATTAAGGGTTA
* *
14946306 ATGGTTTAGGGTTGA
66 ATGGTTTAAGGTTCA
* *
14946321 GGGGTTTAGGGATTAAGGGGACATG
1 AGGGTTTAGGGGTTAAGGGGACATG
14946346 GGTTAAGGGT
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 91 1.00
ACGTcount: A:0.25, C:0.02, G:0.36, T:0.36
Consensus pattern (80 bp):
AGGGTTTAGGGGTTAAGGGGACATGATTTAGGGATTAATGTTTAAAGTTTAGGGATTAAGGGTTA
ATGGTTTAAGGTTCA
Found at i:14946660 original size:16 final size:17
Alignment explanation
Indices: 14946629--14946664 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
14946619 CTATATAACT
14946629 TATTGTTTTTTAATTTA
1 TATTGTTTTTTAATTTA
14946646 TATTGTTTTTT-ATTTA
1 TATTGTTTTTTAATTTA
14946662 TAT
1 TAT
14946665 ATAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (17 bp):
TATTGTTTTTTAATTTA
Found at i:14949691 original size:64 final size:64
Alignment explanation
Indices: 14949618--14949971 Score: 552
Period size: 64 Copynumber: 5.7 Consensus size: 64
14949608 TAATATTTCT
* *
14949618 ATATTTCTATCACAATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
* * *
14949682 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATATAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
* *
14949746 ATATTTCTATCACGATTTTTAAT--A---A---ATTGATATAATATGTCTCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
*
14949802 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATAT---ATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
14949863 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
14949927 ATATTTCTATCACGA-TTTTAATAAATTTATTTATTAATATAATAT
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATAT
14949972 CAATAAAATC
Statistics
Matches: 272, Mismatches: 7, Indels: 23
0.90 0.02 0.08
Matches are distributed among these distances:
56 53 0.19
58 1 0.00
59 1 0.00
61 61 0.22
62 1 0.00
63 30 0.11
64 125 0.46
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (64 bp):
ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
Found at i:14949769 original size:29 final size:29
Alignment explanation
Indices: 14949736--14949825 Score: 69
Period size: 29 Copynumber: 3.2 Consensus size: 29
14949726 ATGTCTCATC
14949736 TAATATATAAATATTTCTATCACGATTTT
1 TAATATATAAATATTTCTATCACGATTTT
* ** * * * * *
14949765 TAATAAATTGATATAATATGTCTC-A--TC
1 TAATATATAAATAT-TTCTATCACGATTTT
*
14949792 TAATATACAAATATTTCTATCACGATTTT
1 TAATATATAAATATTTCTATCACGATTTT
14949821 TAATA
1 TAATA
14949826 AATTTATTTA
Statistics
Matches: 40, Mismatches: 17, Indels: 8
0.62 0.26 0.12
Matches are distributed among these distances:
26 5 0.12
27 12 0.30
29 18 0.45
30 5 0.12
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.44
Consensus pattern (29 bp):
TAATATATAAATATTTCTATCACGATTTT
Found at i:14949780 original size:120 final size:121
Alignment explanation
Indices: 14949618--14949971 Score: 511
Period size: 120 Copynumber: 2.9 Consensus size: 121
14949608 TAATATTTCT
*
14949618 ATATTTCTATCACAATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAA
1 ATATTTCTATCACGATTTTTAAT-AA--TA--TATTGATATAATATGTCCCATCTAATATACAAA
* * *
14949683 TATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATATAA
61 TATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATAT-TAT-ATCTAATATACAA
*
14949746 ATATTTCTATCACGATTTTTAAT-A-A-ATTGATATAATATGTCTCATCTAATATACAAATATTT
1 ATATTTCTATCACGATTTTTAATAATATATTGATATAATATGTCCCATCTAATATACAAATATTT
14949808 CTATCACGATTTTTAATAAATTTATTTATTAATATAATA-TATATCTAATATACAA
66 CTATCACGATTTTTAATAAATTTATTTATTAATATAATATTATATCTAATATACAA
*
14949863 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAA
1 ATATTTCTATCACGATTTTTAAT-AA--TA--TATTGATATAATATGTCCCATCTAATATACAAA
14949928 TATTTCTATCACGA-TTTTAATAAATTTATTTATTAATATAATAT
61 TATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATAT
14949972 CAATAAAATC
Statistics
Matches: 210, Mismatches: 7, Indels: 21
0.88 0.03 0.09
Matches are distributed among these distances:
117 35 0.17
118 2 0.01
119 1 0.00
120 74 0.35
122 1 0.00
123 1 0.00
124 29 0.14
125 44 0.21
126 1 0.00
128 22 0.10
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (121 bp):
ATATTTCTATCACGATTTTTAATAATATATTGATATAATATGTCCCATCTAATATACAAATATTT
CTATCACGATTTTTAATAAATTTATTTATTAATATAATATTATATCTAATATACAA
Found at i:14949782 original size:56 final size:56
Alignment explanation
Indices: 14949715--14949953 Score: 291
Period size: 56 Copynumber: 4.1 Consensus size: 56
14949705 AAATTTATTT
*
14949715 ATTGATATAATATGTCTCATCTAATATATAAATATTTCTATCACGATTTTTAATAA
1 ATTGATATAATATGTCTCATCTAATATACAAATATTTCTATCACGATTTTTAATAA
14949771 ATTGATATAATATGTCTCATCTAATATACAAATATTTCTATCACGATTTTTAATAA
1 ATTGATATAATATGTCTCATCTAATATACAAATATTTCTATCACGATTTTTAATAA
* * * *
14949827 ATTTATTTATTAATATAATATATATCTAATATACAAATATTTCTATCACGATTTTTAATAAATTT
1 ATTGA--TA-TAATAT-GTCT-CATCTAATATACAAATATTTCTATCACGATTTTTAAT--A---
14949892 A
56 A
* *
14949893 TTTATTAATATAATATGTCCCATCTAATATACAAATATTTCTATCACGA-TTTTAATAA
1 ---ATTGATATAATATGTCTCATCTAATATACAAATATTTCTATCACGATTTTTAATAA
14949951 ATT
1 ATT
14949954 TATTTATTAA
Statistics
Matches: 160, Mismatches: 10, Indels: 27
0.81 0.05 0.14
Matches are distributed among these distances:
55 3 0.02
56 59 0.37
58 3 0.02
59 6 0.04
60 2 0.01
61 37 0.23
63 8 0.05
64 28 0.17
65 1 0.01
66 7 0.04
67 2 0.01
69 4 0.03
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (56 bp):
ATTGATATAATATGTCTCATCTAATATACAAATATTTCTATCACGATTTTTAATAA
Found at i:14949879 original size:61 final size:62
Alignment explanation
Indices: 14949787--14949971 Score: 329
Period size: 61 Copynumber: 3.0 Consensus size: 62
14949777 ATAATATGTC
14949787 TCATCTAATATACAAATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATA
1 TCATCTAATATACAAATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATA
*
14949849 T-ATCTAATATACAAATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATG
1 TCATCTAATATACAAATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATA
14949910 TCCCATCTAATATACAAATATTTCTATCACGA-TTTTAATAAATTTATTTATTAATATAATAT
1 T--CATCTAATATACAAATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATAT
14949972 CAATAAAATC
Statistics
Matches: 119, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
61 60 0.50
62 1 0.01
63 30 0.25
64 28 0.24
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.46
Consensus pattern (62 bp):
TCATCTAATATACAAATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATA
Found at i:14949931 original size:181 final size:181
Alignment explanation
Indices: 14949618--14949953 Score: 584
Period size: 181 Copynumber: 1.8 Consensus size: 181
14949608 TAATATTTCT
* *
14949618 ATATTTCTATCACAATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAA
1 ATATTTCTATCACAATTTTTAATAAATTTATTTATTAATATAATATAT--CATCTAATATACAAA
* * *
14949683 TATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATATAAAT
64 TATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAAT
14949748 ATTTCTATCACGATTTTTAATAAATTGATATAATATGTCTCATCTAATATACAA
129 ATTTCTATCACGA-TTTTAATAAATTGATATAATATGTCTCATCTAATATACAA
*
14949802 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATAT-ATCTAATATACAAATA
1 ATATTTCTATCACAATTTTTAATAAATTTATTTATTAATATAATATATCATCTAATATACAAATA
14949866 TTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAATAT
66 TTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAATAT
14949931 TTCTATCACGATTTTAATAAATT
131 TTCTATCACGATTTTAATAAATT
14949954 TATTTATTAA
Statistics
Matches: 146, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
180 12 0.08
181 89 0.61
184 45 0.31
ACGTcount: A:0.39, C:0.11, G:0.04, T:0.46
Consensus pattern (181 bp):
ATATTTCTATCACAATTTTTAATAAATTTATTTATTAATATAATATATCATCTAATATACAAATA
TTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAATAT
TTCTATCACGATTTTAATAAATTGATATAATATGTCTCATCTAATATACAA
Found at i:14951152 original size:9 final size:9
Alignment explanation
Indices: 14951129--14951256 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
14951119 ATTGATCATT
*
14951129 ACTTAAATA
1 ACTTACATA
*
14951138 AATTACATA
1 ACTTACATA
14951147 ACTTACATA
1 ACTTACATA
* *
14951156 ACTCATATA
1 ACTTACATA
14951165 ACTTACATA
1 ACTTACATA
*
14951174 ATTTACATAGCA
1 ACTTACAT---A
14951186 ACTTACATA
1 ACTTACATA
*
14951195 ACTCACATA
1 ACTTACATA
14951204 ACTTACATA
1 ACTTACATA
*
14951213 ATTTACATA
1 ACTTACATA
*
14951222 ACTCACATA
1 ACTTACATA
*
14951231 ACATACATAACA
1 ACTTACAT---A
14951243 ACTTACATA
1 ACTTACATA
14951252 ACTTA
1 ACTTA
14951257 ACTAATACAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 80 0.83
12 16 0.17
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:14951196 original size:39 final size:39
Alignment explanation
Indices: 14951146--14951221 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
14951136 TAAATTACAT
*
14951146 AACTTACATAACTCATATAACTTACATAATTTACATAGC
1 AACTTACATAACTCACATAACTTACATAATTTACATAGC
14951185 AACTTACATAACTCACATAACTTACATAATTTACATA
1 AACTTACATAACTCACATAACTTACATAATTTACATA
14951222 ACTCACATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.33
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAGC
Found at i:14951223 original size:57 final size:57
Alignment explanation
Indices: 14951142--14951254 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 57
14951132 TAAATAAATT
* * ** *
14951142 ACATAACTTACATAACTCATATAACTTACATAATTTACATAGCAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACATACATAACAACTTACATAACTC
* *
14951199 ACATAACTTACATAATTTACATAACTCACATAACATACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACATACATAACAACTTACATAACT
14951255 TAACTAATAC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACATACATAACAACTTACATAACTC
Found at i:14960421 original size:5 final size:5
Alignment explanation
Indices: 14960414--14960450 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
14960404 TATTTGGTAG
*
14960414 TTTAG TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TT
14960451 AAAAGTTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (5 bp):
TTTAA
Found at i:14960688 original size:29 final size:32
Alignment explanation
Indices: 14960635--14960697 Score: 87
Period size: 29 Copynumber: 2.1 Consensus size: 32
14960625 GTTAGCATTT
14960635 AATTGATTTTTAAAAAAGTTAAAAATTA-TAA
1 AATTGATTTTTAAAAAAGTTAAAAATTATTAA
* *
14960666 AATTTATTTTT-ACAAA-TTAAAAATTATTAA
1 AATTGATTTTTAAAAAAGTTAAAAATTATTAA
14960696 AA
1 AA
14960698 AATTTTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 10 0.34
30 9 0.31
31 10 0.34
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (32 bp):
AATTGATTTTTAAAAAAGTTAAAAATTATTAA
Found at i:14965592 original size:20 final size:21
Alignment explanation
Indices: 14965554--14965597 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
14965544 AATGTCATAG
14965554 TAATAAATTTAATTAAAATGT
1 TAATAAATTTAATTAAAATGT
* * *
14965575 TAAT-AATTTGATTTAAATTT
1 TAATAAATTTAATTAAAATGT
14965595 TAA
1 TAA
14965598 AATCTGAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (21 bp):
TAATAAATTTAATTAAAATGT
Found at i:14974754 original size:6 final size:6
Alignment explanation
Indices: 14974743--14974776 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
14974733 CTAAATTAAT
14974743 AAAATA AAAATA AAAATA AAAATA AATAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AA-AATA AAA
14974777 CAAAATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:14974781 original size:18 final size:18
Alignment explanation
Indices: 14974743--14974781 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14974733 CTAAATTAAT
*
14974743 AAAATAAAAATAAAAATA
1 AAAATAAAAATAAAAACA
14974761 AAAATAAATAAT-AAAACA
1 AAAATAAA-AATAAAAACA
14974779 AAA
1 AAA
14974782 TAATATCTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (18 bp):
AAAATAAAAATAAAAACA
Found at i:14974782 original size:13 final size:13
Alignment explanation
Indices: 14974745--14974786 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
14974735 AAATTAATAA
14974745 AATAAAAATAAA-
1 AATAAAAATAAAT
14974757 AATAAAAATAAAT
1 AATAAAAATAAAT
14974770 AATAAAACA-AAAT
1 AATAAAA-ATAAAT
14974783 AATA
1 AATA
14974787 TCTTCTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.43
13 15 0.54
14 1 0.04
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (13 bp):
AATAAAAATAAAT
Found at i:14977428 original size:96 final size:96
Alignment explanation
Indices: 14977264--14977440 Score: 255
Period size: 96 Copynumber: 1.8 Consensus size: 96
14977254 TCGCTTCTTT
* *
14977264 TTGCTCCTCTTTGCCCTCTTAGCTTCGAATTTTCCCTCACTTAAACCAAGCTTTTTGGGCTTATT
1 TTGCTCCTCTTTGCCCTCTTAGCTTCGAATTTTCCCTCACTTAAACCAAGCTTCTTGGGCTCATT
14977329 GTCTGCTCCATCATTCCCTTTGATGACAGAC
66 GTCTGCTCCATCATTCCCTTTGATGACAGAC
* * * * *** * *
14977360 TTGCTCCTCTTTGCCCTTTTGGCTTTGACTTTTCCCTTGTTTGAACCAAGCTTCTTGGGCTCCTT
1 TTGCTCCTCTTTGCCCTCTTAGCTTCGAATTTTCCCTCACTTAAACCAAGCTTCTTGGGCTCATT
14977425 GTCTGCTCCATCATTC
66 GTCTGCTCCATCATTC
14977441 TCGTCGATGA
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 70 1.00
ACGTcount: A:0.13, C:0.31, G:0.15, T:0.42
Consensus pattern (96 bp):
TTGCTCCTCTTTGCCCTCTTAGCTTCGAATTTTCCCTCACTTAAACCAAGCTTCTTGGGCTCATT
GTCTGCTCCATCATTCCCTTTGATGACAGAC
Found at i:14980484 original size:16 final size:17
Alignment explanation
Indices: 14980453--14980486 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
14980443 AGTTTTATTC
*
14980453 TTATTTTTTTAGTAATT
1 TTATATTTTTAGTAATT
14980470 TTATATTTTTA-TAATT
1 TTATATTTTTAGTAATT
14980486 T
1 T
14980487 CAAAAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
TTATATTTTTAGTAATT
Found at i:14980864 original size:19 final size:19
Alignment explanation
Indices: 14980840--14980876 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
14980830 TAAAAAAGAG
14980840 TTTATTTTT-AAATATATAT
1 TTTATTTTTCAAAT-TATAT
14980859 TTTATTTTTCAAATTATA
1 TTTATTTTTCAAATTATA
14980877 AAAAATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTATTTTTCAAATTATAT
Found at i:14985917 original size:17 final size:18
Alignment explanation
Indices: 14985897--14985931 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
14985887 TTTTTATGTT
*
14985897 TATTTTCAA-TTTAATTA
1 TATTTTAAATTTTAATTA
14985914 TATTTTAAATTTTAATTA
1 TATTTTAAATTTTAATTA
14985932 AATATGTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTTTAAATTTTAATTA
Found at i:14992211 original size:40 final size:39
Alignment explanation
Indices: 14992125--14992200 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 39
14992115 GAATATGTTC
* *
14992125 AGCACTAAGTGTGTGGTTGAAATAGCTTCGGCTATAAAT
1 AGCACTAAATGTGTGATTGAAATAGCTTCGGCTATAAAT
* *
14992164 AACACTAAATGTGTGAATTGGAATAGCTTCGGCTATA
1 AGCACTAAATGTGTG-ATTGAAATAGCTTCGGCTATA
14992201 TGTGGCACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
39 13 0.41
40 19 0.59
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (39 bp):
AGCACTAAATGTGTGATTGAAATAGCTTCGGCTATAAAT
Found at i:14993018 original size:10 final size:10
Alignment explanation
Indices: 14992983--14993024 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
14992973 GATCATATAC
14992983 TTTGGTATGA
1 TTTGGTATGA
*
14992993 TTTTGGTTTAGA
1 -TTTGGTAT-GA
14993005 TTTGGTATGA
1 TTTGGTATGA
14993015 TTTGGT-TGA
1 TTTGGTATGA
14993024 T
1 T
14993025 AAATTGAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 4 0.14
10 8 0.29
11 14 0.50
12 2 0.07
ACGTcount: A:0.17, C:0.00, G:0.29, T:0.55
Consensus pattern (10 bp):
TTTGGTATGA
Found at i:14993696 original size:23 final size:23
Alignment explanation
Indices: 14993670--14993713 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
14993660 TCGGTAATGG
14993670 CTTCAACCCTATTCCGGCAACGC
1 CTTCAACCCTATTCCGGCAACGC
14993693 CTTCAACCCTATTCCGGCAAC
1 CTTCAACCCTATTCCGGCAAC
14993714 AGATACGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.23, C:0.43, G:0.11, T:0.23
Consensus pattern (23 bp):
CTTCAACCCTATTCCGGCAACGC
Found at i:14994679 original size:16 final size:16
Alignment explanation
Indices: 14994658--14994691 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14994648 CCAATATCCT
* *
14994658 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
14994674 ATTATCACATTTACAC
1 ATTATCACATTTACAC
14994690 AT
1 AT
14994692 ATATATTCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:14997603 original size:38 final size:38
Alignment explanation
Indices: 14997548--14997621 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
14997538 GTCACTAATA
*
14997548 TTATCGAAAAGTGACAAATCAGTCACCCATTAACATCG
1 TTATCAAAAAGTGACAAATCAGTCACCCATTAACATCG
* *
14997586 TTATCAAAAAGTTACAAATCAGTCACTCATTAACAT
1 TTATCAAAAAGTGACAAATCAGTCACCCATTAACAT
14997622 TTTCTGTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.27
Consensus pattern (38 bp):
TTATCAAAAAGTGACAAATCAGTCACCCATTAACATCG
Found at i:14998708 original size:20 final size:20
Alignment explanation
Indices: 14998683--14998720 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
14998673 TTGTTATTTT
14998683 TTGAAAGTTGAGTGACTGAA
1 TTGAAAGTTGAGTGACTGAA
14998703 TTGAAAGTTGAGTGACTG
1 TTGAAAGTTGAGTGACTG
14998721 TTTTGTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.32
Consensus pattern (20 bp):
TTGAAAGTTGAGTGACTGAA
Found at i:14999001 original size:20 final size:19
Alignment explanation
Indices: 14998976--14999025 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
14998966 AAATTATGTA
14998976 TATATATATTCTTTAT-TTTT
1 TATATA-ATT-TTTATATTTT
14998996 TATATAATTTTTATATTTT
1 TATATAATTTTTATATTTT
14999015 TA-A-AATTTTTA
1 TATATAATTTTTA
14999026 AAGTTTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 8 0.28
18 6 0.21
19 9 0.31
20 6 0.21
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TATATAATTTTTATATTTT
Found at i:15001834 original size:9 final size:9
Alignment explanation
Indices: 15001820--15001872 Score: 51
Period size: 9 Copynumber: 6.3 Consensus size: 9
15001810 TTTCATAAAC
15001820 AATAATTAA
1 AATAATTAA
15001829 AATAA-TAA
1 AATAATTAA
15001837 AAT-A-TAA
1 AATAATTAA
*
15001844 AAAAATT-A
1 AATAATTAA
*
15001852 AATATTTAA
1 AATAATTAA
*
15001861 AATTATTAA
1 AATAATTAA
15001870 AAT
1 AAT
15001873 TGACACAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
7 6 0.17
8 13 0.36
9 17 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
AATAATTAA
Found at i:15001898 original size:9 final size:9
Alignment explanation
Indices: 15001859--15001953 Score: 88
Period size: 9 Copynumber: 10.4 Consensus size: 9
15001849 TTAAATATTT
*
15001859 AAAATTATT
1 AAAATTATA
*
15001868 AAAATTGACA
1 AAAATT-ATA
*
15001878 CAAATT-TA
1 AAAATTATA
15001886 AAAATTATAA
1 AAAATTAT-A
15001896 AAAATTATA
1 AAAATTATA
*
15001905 AATATTATA
1 AAAATTATA
*
15001914 AAAATTCTA
1 AAAATTATA
15001923 ATAAATTATA
1 A-AAATTATA
15001933 AAACA--ATA
1 AAA-ATTATA
15001941 AAAATTATA
1 AAAATTATA
15001950 AAAA
1 AAAA
15001954 GTGATTTAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
7 1 0.01
8 12 0.17
9 33 0.47
10 24 0.34
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (9 bp):
AAAATTATA
Found at i:15001942 original size:36 final size:35
Alignment explanation
Indices: 15001879--15001953 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 35
15001869 AAATTGACAC
*
15001879 AAATTTAAAAATTATAAAAAATTATAAATATTATAA
1 AAATTTAAAAATTATAAAAAA-TATAAAAATTATAA
*
15001915 AAATTCTAATAAATTATAAAACA-ATAAAAATTATAA
1 AAATT-TAA-AAATTATAAAAAATATAAAAATTATAA
15001951 AAA
1 AAA
15001954 GTGATTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 20 0.57
37 3 0.09
38 12 0.34
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (35 bp):
AAATTTAAAAATTATAAAAAATATAAAAATTATAA
Found at i:15001947 original size:17 final size:16
Alignment explanation
Indices: 15001884--15001953 Score: 68
Period size: 19 Copynumber: 3.9 Consensus size: 16
15001874 GACACAAATT
15001884 TAAAAATTATAAAAAA
1 TAAAAATTATAAAAAA
*
15001900 TTATAAATATTATAAAAATTC
1 -TA-AAA-ATTATAAAAA--A
15001921 TAATAAATTATAAAACAA
1 TAA-AAATTATAAAA-AA
15001939 TAAAAATTATAAAAA
1 TAAAAATTATAAAAA
15001954 GTGATTTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
16 1 0.02
17 13 0.29
18 6 0.13
19 20 0.44
20 5 0.11
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAAAATTATAAAAAA
Found at i:15002590 original size:19 final size:18
Alignment explanation
Indices: 15002532--15002592 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 18
15002522 TTAGATAATT
*
15002532 TTTTAATGATTTTTTATAA
1 TTTTAAT-ATTTTTAATAA
*
15002551 TTTT-ATATGTTTATATCAA
1 TTTTAATATTTTTA-AT-AA
15002570 TTTTAATATTTTTGAATAA
1 TTTTAATATTTTT-AATAA
15002589 TTTT
1 TTTT
15002593 TATAAGTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
17 5 0.14
18 4 0.11
19 16 0.46
20 9 0.26
21 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (18 bp):
TTTTAATATTTTTAATAA
Found at i:15002602 original size:19 final size:18
Alignment explanation
Indices: 15002547--15002626 Score: 63
Period size: 19 Copynumber: 4.2 Consensus size: 18
15002537 ATGATTTTTT
*
15002547 ATAATTTTATATGTTT-A
1 ATAATTTTATAAGTTTGA
**
15002564 TATCAATTTTAATATTTTTGA
1 -AT-AATTTT-ATAAGTTTGA
15002585 ATAATTTTTATAAGTTTGTA
1 ATAA-TTTTATAAGTTTG-A
* *
15002605 AGAATTTTATAAGTTTGT
1 ATAATTTTATAAGTTTGA
15002623 ATAA
1 ATAA
15002627 AATTTTAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
18 5 0.10
19 28 0.55
20 17 0.33
21 1 0.02
ACGTcount: A:0.36, C:0.01, G:0.09, T:0.54
Consensus pattern (18 bp):
ATAATTTTATAAGTTTGA
Found at i:15002610 original size:20 final size:19
Alignment explanation
Indices: 15002590--15002633 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
15002580 TTTGAATAAT
15002590 TTTTATAAGTTTGTAAGAA
1 TTTTATAAGTTTGTAAGAA
*
15002609 TTTTATAAGTTTGTATAAAA
1 TTTTATAAGTTTGTA-AGAA
15002629 TTTTA
1 TTTTA
15002634 AATATTTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.52
Consensus pattern (19 bp):
TTTTATAAGTTTGTAAGAA
Found at i:15003087 original size:26 final size:26
Alignment explanation
Indices: 15003049--15003158 Score: 195
Period size: 26 Copynumber: 4.2 Consensus size: 26
15003039 TGATACAAAT
15003049 TGATAATAG-GTTAGGTAAATGTTTCA
1 TGATAAT-GTGTTAGGTAAATGTTTCA
15003075 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATGTGTTAGGTAAATGTTTCA
15003101 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATGTGTTAGGTAAATGTTTCA
*
15003127 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGTGTTAGGTAAATGTTTCA
15003153 TGATAA
1 TGATAA
15003159 GAATTTCATG
Statistics
Matches: 82, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
25 1 0.01
26 81 0.99
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.40
Consensus pattern (26 bp):
TGATAATGTGTTAGGTAAATGTTTCA
Found at i:15003095 original size:13 final size:13
Alignment explanation
Indices: 15003058--15003148 Score: 50
Period size: 13 Copynumber: 7.0 Consensus size: 13
15003048 TTGATAATAG
15003058 GTTAGGTAAATGT
1 GTTAGGTAAATGT
*
15003071 -TTCATG-ATAATGT
1 GTT-AGGTA-AATGT
15003084 GTTAGGTAAATGT
1 GTTAGGTAAATGT
*
15003097 -TTCATG-ATAATGT
1 GTT-AGGTA-AATGT
15003110 GTTAGGTAAATGT
1 GTTAGGTAAATGT
* *
15003123 -TTCATG-ATAATGG
1 GTT-AGGTA-AATGT
15003136 GTTAGGTAAATGT
1 GTTAGGTAAATGT
15003149 TTCATGATAA
Statistics
Matches: 58, Mismatches: 8, Indels: 24
0.64 0.09 0.27
Matches are distributed among these distances:
12 9 0.16
13 40 0.69
14 9 0.16
ACGTcount: A:0.31, C:0.03, G:0.25, T:0.41
Consensus pattern (13 bp):
GTTAGGTAAATGT
Found at i:15003756 original size:26 final size:26
Alignment explanation
Indices: 15003727--15003779 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15003717 TTTACAGTTT
15003727 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
15003753 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
15003779 T
1 T
15003780 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:15004273 original size:137 final size:137
Alignment explanation
Indices: 15004027--15004313 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
15004017 GAGTAGTCTC
15004027 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
15004092 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
15004157 ACTGTTA
131 ACTGTTA
15004164 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
15004229 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
15004294 ACTGTTA
131 ACTGTTA
**
15004301 CCTGAATGGGCTT
1 CCCAAATGGGCTT
15004314 AGGCCCAATA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:15008116 original size:26 final size:26
Alignment explanation
Indices: 15008078--15008187 Score: 195
Period size: 26 Copynumber: 4.2 Consensus size: 26
15008068 TGATACAAAT
15008078 TGATAATAG-GTTAGGTAAATGTTTCA
1 TGATAAT-GTGTTAGGTAAATGTTTCA
15008104 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATGTGTTAGGTAAATGTTTCA
15008130 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATGTGTTAGGTAAATGTTTCA
*
15008156 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGTGTTAGGTAAATGTTTCA
15008182 TGATAA
1 TGATAA
15008188 GAATTTCATG
Statistics
Matches: 82, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
25 1 0.01
26 81 0.99
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.40
Consensus pattern (26 bp):
TGATAATGTGTTAGGTAAATGTTTCA
Found at i:15008124 original size:13 final size:13
Alignment explanation
Indices: 15008087--15008177 Score: 50
Period size: 13 Copynumber: 7.0 Consensus size: 13
15008077 TTGATAATAG
15008087 GTTAGGTAAATGT
1 GTTAGGTAAATGT
*
15008100 -TTCATG-ATAATGT
1 GTT-AGGTA-AATGT
15008113 GTTAGGTAAATGT
1 GTTAGGTAAATGT
*
15008126 -TTCATG-ATAATGT
1 GTT-AGGTA-AATGT
15008139 GTTAGGTAAATGT
1 GTTAGGTAAATGT
* *
15008152 -TTCATG-ATAATGG
1 GTT-AGGTA-AATGT
15008165 GTTAGGTAAATGT
1 GTTAGGTAAATGT
15008178 TTCATGATAA
Statistics
Matches: 58, Mismatches: 8, Indels: 24
0.64 0.09 0.27
Matches are distributed among these distances:
12 9 0.16
13 40 0.69
14 9 0.16
ACGTcount: A:0.31, C:0.03, G:0.25, T:0.41
Consensus pattern (13 bp):
GTTAGGTAAATGT
Found at i:15009303 original size:137 final size:137
Alignment explanation
Indices: 15009057--15009343 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
15009047 GAGTAGTCTC
15009057 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
15009122 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
15009187 ACTGTTA
131 ACTGTTA
15009194 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
15009259 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
15009324 ACTGTTA
131 ACTGTTA
**
15009331 CCTGAATGGGCTT
1 CCCAAATGGGCTT
15009344 AGGCCCAATA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:15010174 original size:19 final size:19
Alignment explanation
Indices: 15010152--15010191 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
15010142 TTTCTGAGTA
*
15010152 TTTTATAATTTTTTATAAT
1 TTTTATAAGTTTTTATAAT
* *
15010171 TTTTATGAGTTTTTATTAT
1 TTTTATAAGTTTTTATAAT
15010190 TT
1 TT
15010192 ATATTTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTTATAAGTTTTTATAAT
Found at i:15015044 original size:11 final size:11
Alignment explanation
Indices: 15015030--15015070 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
15015020 TGTTTTCTCC
15015030 CTATTTTGCTA
1 CTATTTTGCTA
*
15015041 CTATTTTACTA
1 CTATTTTGCTA
* *
15015052 TTATGTTGCTA
1 CTATTTTGCTA
15015063 CTATTTTG
1 CTATTTTG
15015071 TTGCTATAGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:15015066 original size:14 final size:14
Alignment explanation
Indices: 15015047--15015076 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15015037 GCTACTATTT
15015047 TACTATTATGTTGC
1 TACTATTATGTTGC
*
15015061 TACTATTTTGTTGC
1 TACTATTATGTTGC
15015075 TA
1 TA
15015077 TAGTTTGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.53
Consensus pattern (14 bp):
TACTATTATGTTGC
Found at i:15015166 original size:30 final size:31
Alignment explanation
Indices: 15015117--15015180 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 31
15015107 ACTTATTTTA
15015117 TTGTTAATTTTTATTATTATTTTA-AAGACAT
1 TTGTTAATTTTTATTATTATTTTAGAA-ACAT
*
15015148 TTGTTAA-TTTTGTTATTATTTTAGAAACAT
1 TTGTTAATTTTTATTATTATTTTAGAAACAT
15015178 TTG
1 TTG
15015181 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 22 0.71
31 9 0.29
ACGTcount: A:0.30, C:0.03, G:0.09, T:0.58
Consensus pattern (31 bp):
TTGTTAATTTTTATTATTATTTTAGAAACAT
Found at i:15015334 original size:12 final size:12
Alignment explanation
Indices: 15015304--15015336 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
15015294 TATATATTTT
15015304 AAAATT-ATATA
1 AAAATTAATATA
15015315 AAAA-TAATATA
1 AAAATTAATATA
15015326 AAAATTAATAT
1 AAAATTAATAT
15015337 GGGAGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:15017838 original size:3 final size:3
Alignment explanation
Indices: 15017830--15017861 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
15017820 GGTTGGTAAT
15017830 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
15017862 TTTGCATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:15022976 original size:27 final size:27
Alignment explanation
Indices: 15022899--15022977 Score: 72
Period size: 27 Copynumber: 2.8 Consensus size: 27
15022889 TACTTATTAT
* *
15022899 TATTATTATTTTATATA-TCCCTCATCA
1 TATTA-TATTTTATATATTTCATCATCA
*
15022926 TATTATATTCTATTTATATATTCATCA-CA
1 TATTATATT-T-TATATAT-TTCATCATCA
15022955 TATTATATTTTACTATATTTCAT
1 TATTATATTTTA-TATATTTCAT
15022978 GATATTTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
26 4 0.09
27 12 0.28
28 11 0.26
29 11 0.26
30 5 0.12
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (27 bp):
TATTATATTTTATATATTTCATCATCA
Found at i:15023002 original size:20 final size:21
Alignment explanation
Indices: 15022954--15023002 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
15022944 TATTCATCAC
15022954 ATATTATA-TTTTACTATATT
1 ATATTATATTTTTACTATATT
*
15022974 -TCATGATATTTTTA-TATATT
1 AT-ATTATATTTTTACTATATT
15022994 ATATTATAT
1 ATATTATAT
15023003 ACATTGTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
19 1 0.04
20 17 0.71
21 6 0.25
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (21 bp):
ATATTATATTTTTACTATATT
Found at i:15035617 original size:206 final size:207
Alignment explanation
Indices: 15035064--15035619 Score: 801
Period size: 207 Copynumber: 2.7 Consensus size: 207
15035054 GCAGATCTGG
* *
15035064 CTGAAGCAAGATCCAAGTTGGTTTGGCATCCCTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
*
15035129 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTAGCATCTCTGTATTGTCAG
66 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* **
15035194 AGAGCAAATCGAAGTTTGGTGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTT
131 AGAGCAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTT
* *
15035259 CAGATGTTTATA
196 CAGATGATTAGA
* * * *
15035271 TTGAAGCAAGATCCAAGATGATTTGGCATCATTGTGCTTACAAGGAACAAATCAAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* *
15035336 GGTTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
15035401 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTAACCTT
131 AGAGCAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTT
15035466 CAGATGATTAGA
196 CAGATGATTAGA
* * ** *
15035478 CTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGTGCTTATAAGGAGTAAATCGAAGACATAGCC
1 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* ** * * * * * *
15035542 GATTTGGTTTTTGCATGCTTAC-ACTAAAACAAATCTAAGATGACTTGGCATCTTTGTATTGGCA
66 GATTTGGCTTTCACGTGCTTACGA-TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
*
15035606 GTGAGCAAATCGAA
130 GAGAGCAAATCGAA
15035620 AAAGGCAGAT
Statistics
Matches: 309, Mismatches: 39, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
205 1 0.00
206 112 0.36
207 196 0.63
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
AGAGCAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTT
CAGATGATTAGA
Found at i:15037477 original size:29 final size:29
Alignment explanation
Indices: 15037439--15037506 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
15037429 GTAAAATACT
*
15037439 TATTATTATTAT-TTTATATATCCCTCATCA
1 TATTA-TATTATATTTATATATCCATCA-CA
* *
15037469 TATTATATTCTATTTATATATTCATCACA
1 TATTATATTATATTTATATATCCATCACA
15037498 TATTATATT
1 TATTATATT
15037507 TTACTATATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 16 0.47
30 18 0.53
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.54
Consensus pattern (29 bp):
TATTATATTATATTTATATATCCATCACA
Found at i:15037519 original size:27 final size:27
Alignment explanation
Indices: 15037442--15037520 Score: 72
Period size: 27 Copynumber: 2.8 Consensus size: 27
15037432 AAATACTTAT
* *
15037442 TATTATTATTTTATATA-TCCCTCATCA
1 TATTA-TATTTTATATATTTCATCATCA
*
15037469 TATTATATTCTATTTATATATTCATCA-CA
1 TATTATATT-T-TATATAT-TTCATCATCA
15037498 TATTATATTTTACTATATTTCAT
1 TATTATATTTTA-TATATTTCAT
15037521 GATATTTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
26 4 0.09
27 12 0.28
28 11 0.26
29 11 0.26
30 5 0.12
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (27 bp):
TATTATATTTTATATATTTCATCATCA
Found at i:15037545 original size:20 final size:21
Alignment explanation
Indices: 15037497--15037545 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
15037487 TATTCATCAC
15037497 ATATTATA-TTTTACTATATT
1 ATATTATATTTTTACTATATT
*
15037517 -TCATGATATTTTTA-TATATT
1 AT-ATTATATTTTTACTATATT
15037537 ATATTATAT
1 ATATTATAT
15037546 ACATTGTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
19 1 0.04
20 17 0.71
21 6 0.25
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (21 bp):
ATATTATATTTTTACTATATT
Found at i:15043292 original size:36 final size:36
Alignment explanation
Indices: 15043244--15043315 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
15043234 CTTCTTTACA
15043244 AATAATACGAGAGCACCCCACGGTGAAAAGCTTAGT
1 AATAATACGAGAGCACCCCACGGTGAAAAGCTTAGT
* *
15043280 AATAATATGAGAGCACCCCATGGTGAAAAGCTTAGT
1 AATAATACGAGAGCACCCCACGGTGAAAAGCTTAGT
15043316 CTTATGAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.19
Consensus pattern (36 bp):
AATAATACGAGAGCACCCCACGGTGAAAAGCTTAGT
Found at i:15048839 original size:7 final size:7
Alignment explanation
Indices: 15048827--15048857 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
15048817 AGATGGTAAA
15048827 AAATATT
1 AAATATT
15048834 AAATATT
1 AAATATT
15048841 AAATATT
1 AAATATT
15048848 AAATATT
1 AAATATT
15048855 AAA
1 AAA
15048858 AGTGTATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
AAATATT
Found at i:15056498 original size:22 final size:21
Alignment explanation
Indices: 15056464--15056504 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
15056454 TTTTCTTCTT
15056464 TTCATTCTTTTCCC-TTTTGC
1 TTCATTCTTTTCCCATTTTGC
15056484 TTCATTACTTTTTCCCATTTT
1 TTCATT-C-TTTTCCCATTTT
15056505 ATTGTCGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 1 0.06
22 7 0.39
23 4 0.22
ACGTcount: A:0.10, C:0.27, G:0.02, T:0.61
Consensus pattern (21 bp):
TTCATTCTTTTCCCATTTTGC
Found at i:15060793 original size:24 final size:25
Alignment explanation
Indices: 15060736--15060796 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
15060726 ATATCCTATT
* *
15060736 ATATTTATAAACTGTTTATTTTTAA
1 ATATTAATAAAGTGTTTATTTTTAA
*
15060761 A-AATAATAAAGTGTTTA-TTTTAA
1 ATATTAATAAAGTGTTTATTTTTAA
*
15060784 ATATTGATAAAGT
1 ATATTAATAAAGT
15060797 AAAATGAGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 7 0.23
24 22 0.73
25 1 0.03
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.48
Consensus pattern (25 bp):
ATATTAATAAAGTGTTTATTTTTAA
Done.