Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 63 of 444
Found at i:15063586 original size:24 final size:23
Alignment explanation
Indices: 15063543--15063587 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
15063533 GGACTAAATT
*
15063543 GTAAAAGTTGTGAAATTCTAAGG
1 GTAAAAGTTGTAAAATTCTAAGG
15063566 GTAAAAG-TGTAAATATGTCTAA
1 GTAAAAGTTGTAAA-AT-TCTAA
15063588 ATGTGTGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
23 9 0.47
24 5 0.26
ACGTcount: A:0.42, C:0.04, G:0.22, T:0.31
Consensus pattern (23 bp):
GTAAAAGTTGTAAAATTCTAAGG
Found at i:15074192 original size:107 final size:102
Alignment explanation
Indices: 15074033--15074229 Score: 279
Period size: 107 Copynumber: 1.9 Consensus size: 102
15074023 AAGGGCATCT
*
15074033 TAAAAAAAAAAAAAAAGGGATCAAGGCGAAAACCCGAAAAAGGCGTCTTGATT-AGTACAAAAAG
1 TAAAAAAAAAAAAAAAGGGATCAAGGCGAAAACCCGAAAAAGGCGTCTTGATTAAATAC-AAAAG
15074097 ATCAAGATGAAAACCCGAAAAGGGCATATAAAAAAATAA
65 ATCAAGATGAAAACCCG-AAAGGGCATATAAAAAAATAA
* * *
15074136 TAAAAAAAGAAAGAAAAAGGGTGATCAATGTGAAAACCCGAAAAGGGCGTCTTGATTAAATACAA
1 TAAAAAAA-AAA-AAAAA-GG-GATCAAGGCGAAAACCCGAAAAAGGCGTCTTGATTAAATACAA
* *
15074201 AAGATTAGGATGAAAACCCGAAAGGGCAT
62 AAGATCAAGATGAAAACCCGAAAGGGCAT
15074230 TCTAATTAAG
Statistics
Matches: 83, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
103 8 0.10
104 3 0.04
105 5 0.06
106 11 0.13
107 52 0.63
108 4 0.05
ACGTcount: A:0.53, C:0.12, G:0.21, T:0.14
Consensus pattern (102 bp):
TAAAAAAAAAAAAAAAGGGATCAAGGCGAAAACCCGAAAAAGGCGTCTTGATTAAATACAAAAGA
TCAAGATGAAAACCCGAAAGGGCATATAAAAAAATAA
Found at i:15075087 original size:76 final size:74
Alignment explanation
Indices: 15074997--15075277 Score: 321
Period size: 76 Copynumber: 3.9 Consensus size: 74
15074987 GTTTTATTTC
* * * *
15074997 AAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA-TTT
**
15075062 TCGTATGTTTC
65 T-GTATGTTAA
*
15075073 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCAA----
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTT
*
15075134 --A---AAA
66 GTATGTTAA
* *
15075138 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT-
*
15075203 TGT-TGTCAA
65 TGTATGTTAA
* * *
15075212 AAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
15075277 T
64 T
15075278 CTGTTTTTCA
Statistics
Matches: 176, Mismatches: 17, Indels: 24
0.81 0.08 0.11
Matches are distributed among these distances:
65 58 0.33
68 1 0.01
74 40 0.23
76 77 0.44
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTT
GTATGTTAA
Found at i:15075177 original size:65 final size:65
Alignment explanation
Indices: 15075073--15075198 Score: 225
Period size: 65 Copynumber: 1.9 Consensus size: 65
15075063 CGTATGTTTC
* *
15075073 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCAAAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAAAAA
*
15075138 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGACACGCTGAGGTAATTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
15075199 TTTCTGTTGT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.24
Consensus pattern (65 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAAAAA
Found at i:15075266 original size:141 final size:141
Alignment explanation
Indices: 15074997--15075274 Score: 400
Period size: 141 Copynumber: 2.0 Consensus size: 141
15074987 GTTTTATTTC
* * * *
15074997 AAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTC
*** * * *
15075062 TCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTA
66 TCGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTA
15075127 TTTTCAAAAAA
131 TTTTCAAAAAA
*
15075138 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGACACGCTGAGGTAATT-TCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTGTCAATTT
*
15075202 CT-GT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
65 CTCGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACACGCCGAG
15075265 GTATTTTCAA
128 GTATTTTCAA
15075275 TTTCTGTTTT
Statistics
Matches: 122, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
139 42 0.34
140 2 0.02
141 75 0.61
142 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (141 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTC
TCGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTA
TTTTCAAAAAA
Found at i:15075287 original size:14 final size:14
Alignment explanation
Indices: 15075268--15075294 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15075258 CGCCGAGGTA
15075268 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
15075282 TTTTCAATTTCTG
1 TTTTCAATTTCTG
15075295 CCTTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:15075300 original size:14 final size:14
Alignment explanation
Indices: 15075269--15075302 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
15075259 GCCGAGGTAT
**
15075269 TTTCAATTTCTGTT
1 TTTCAATTTCTGCC
15075283 TTTCAATTTCTGCC
1 TTTCAATTTCTGCC
15075297 TTTCAA
1 TTTCAA
15075303 AAATCAACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.56
Consensus pattern (14 bp):
TTTCAATTTCTGCC
Found at i:15075403 original size:73 final size:72
Alignment explanation
Indices: 15075283--15075873 Score: 454
Period size: 73 Copynumber: 7.7 Consensus size: 72
15075273 AATTTCTGTT
* * ** *
15075283 TTTCAATTTCTGCCTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCATGACACGC
1 TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
15075348 TGAGGTGA
66 TGAGGT-A
*
15075356 TTTCAATTTCTG-TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACG
1 TTTCAATTTCTGCTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
15075420 TTGAGGTAA
65 CTGAGGT-A
* ** * * * * *
15075429 TTTCAATTTCTGCTTTTCAATTTATATTTTTCAA-AAAAATTCAACTCATATTGTGAGAGGTGAG
1 TTTCAATTTCTGCTTTTCAA---A-A---ATCAACTCATATT--GC-GAGA--G-GTG-----AG
**
15075493 TTGAGCCTCAAGACACATTGAGGTA
48 TTGAGCCTCAAGACACGCTGAGGTA
** *
15075518 TTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACT
1 -TTTCAATTTCTGCTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
15075583 CGTTGAGGTA
63 CGCTGAGGTA
*
15075593 TTTTCAATTTCTGTTCAATTTATGTTTTTCAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGC
1 -TTTCAATTTCTG--C---------TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
15075658 CTCAGGACACGCTGAGGTA
54 CTCAAGACACGCTGAGGTA
* ** *
15075677 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
1 -TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
15075742 CTGAGGTA
65 CTGAGGTA
* * ** * *
15075750 TTGTCAATTTTTG-TGTTT-TAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACCC
1 TT-TCAATTTCTGCT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
15075813 GATGAGGTAA
64 GCTGAGGT-A
* *
15075823 TTTCAATTTCTG-TTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TTTCAATTTCTGCTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
15075874 ACCTTTTAAT
Statistics
Matches: 424, Mismatches: 54, Indels: 80
0.76 0.10 0.14
Matches are distributed among these distances:
71 2 0.00
72 62 0.15
73 177 0.42
74 3 0.01
75 38 0.09
76 1 0.00
77 2 0.00
79 4 0.01
80 5 0.01
81 1 0.00
82 2 0.00
83 2 0.00
84 63 0.15
85 6 0.01
86 9 0.02
88 1 0.00
89 2 0.00
90 42 0.10
92 2 0.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (72 bp):
TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
TGAGGTA
Found at i:15075475 original size:163 final size:157
Alignment explanation
Indices: 15075138--15077443 Score: 963
Period size: 146 Copynumber: 14.9 Consensus size: 157
15075128 TTTCAAAAAA
*
15075138 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTCAATTTC
* * *
15075203 TG-TTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTC-AGGTCACACGCCGAGG
65 TGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG---CACGCTGAGG
* * ***
15075266 TATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTC
125 TAATTTCAATTTCTG--TTTCAATTTATATTTTTC
* ** *
15075301 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCATGACACGCTGAGGTGATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTCAATTTC
*
15075366 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAATT
65 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATT
15075431 TCAATTTCTGCTTTTCAATTTATATTTTTC
130 TCAATTTCTG--TTTCAATTTATATTTTTC
* * **
15075461 AAAAAAATTCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAAT
1 --AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTCAAT
** * * *
15075526 TTCTGCTTT-TCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACTCGTTGAG
62 TTCTG-TTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAG
* *
15075590 GTATTTTCAATTTCTG-TTCAATTTATGTTTTTC
124 GTAATTTCAATTTCTGTTTCAATTTATATTTTTC
*
15075623 AAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTCAATTTC
* **
15075688 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGT-ATT
65 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATT
* *
15075752 GTCAATTTTTGTGT---TTTA-A---TT-
130 -TCAATTTCTGTTTCAATTTATATTTTTC
* *
15075773 -----TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACCCGATGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTCAATTTC
* * * * ** ***
15075833 TGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTA--CT-TTTT
65 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC--TCAA-GGC-ACGCTGAGGT
** * * * * * ****
15075895 CAAAATCAA-CTCATATTGCGAGAAGTGAGT-TGAGCC
126 -AATTTCAATTTC-TGTTTC---AATTTA-TATTTTTC
****** * * *** *** * * * * *
15075931 TCGGGGCACGCTGAGGTATTTTTAGTTTTAAATTGA--CTCATATTGCGAGA-GGTGAGTTAAGC
1 AAAAATCA-ACTCA--TATTGCGAGAGGTGAGTTGAGCCTC--A--G-GACACGCTGAGGT-A--
** * * * *
15075993 CTTTTTATTTTTGTTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTCGAGCCTC-AGGTCAC
55 -TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CAC
* * *
15076056 GCTGAGGTATTTTCAATTTTTGTGT---TTTA-A---TT-
118 GCTGAGGTAATTTCAATTTCTGTTTCAATTTATATTTTTC
*
15076088 -----TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTCAATTTC
* *
15076148 TGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGATGAGGTAAT
65 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGCTGAGGTAAT
*
15076212 TTCAATTTCTG------------TTTGTC
129 TTCAATTTCTGTTTCAATTTATATTTTTC
* *
15076229 AAGAATCAACTCATATTGCGAGAGGT--G--G-G--T--TGA-AC-C-------TTTCAATTTCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCAATTTCT
* * * * * * *
15076276 ACTTTTTC-AAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC-AGGTCACCCCGAGGTATT
66 -GTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGCTGAGGTAAT
*
15076339 TTCAATTTCTGTTTTC-A-TTATTATGTTTTG
129 TTCAATTTCTG-TTTCAATTTA-TAT-TTTTC
* * * * * * *
15076369 AAAGAATCAACTCATATTACGAGAGGTGAGTCGAGCCTCAAGCCACGCGCTGAAGTATTTTTAGT
1 AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACACGCTGAGGTA-TTTCAAT
* * * * * ** * *
15076434 TTATG-TT-TCAAAAATCAACTCATGTTGGGAGAGGTGAGTTAAGCCTTTTAATTTC-TGTTGTT
62 TTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC--TCAA-GGCACGCTG--
** *
15076496 TCA-AAAATCCTCTC-ATGTTGCGAGAGGTGAGTT-AAGCCTTT-TAATTTCTGTTTTTC
122 --AGGTAAT--T-TCAAT-TT-C------TG-TTTCAA---TTTAT-A------TTTTTC
*
15076552 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGA-CCTCAGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTCAATT
** * * *
15076616 TCTG-TTGTCAAAAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACATG
63 TCTGTTTGTC---------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACG
* *
15076680 CTGAGGTACTTTCAATTT-T-TGTC----------TTTC
119 CTGAGGTAATTTCAATTTCTGTTTCAATTTATATTTTTC
* ** * *
15076707 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTCAATTTC
*
15076772 TGTTT-TCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTA
65 TGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGCTGAGGTA
**
15076835 ATTTCAATTTCTGTTGTCAA---A-A----AA
127 ATTTCAATTTCTGTT-TCAATTTATATTTTTC
** * *
15076859 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTCAATTTC
** * ** * * *
15076924 TGTTT-TCAAATTTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
65 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATT
15076988 TCAATTTCTG-------------TTTTC
130 TCAATTTCTGTTTCAATTTATATTTTTC
* ** * * *
15077003 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTCAATTTC
* * *
15077068 TGTTT-TCAAAAAAATCAACTTATATTGTGAGAGGTGAGTTGAGCCTC-AGGACAAGCTGAGGTA
65 TGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGCTGAGGTA
* *
15077131 ATTTCAATTTTTGTTGTCAA---A-A-----A
127 ATTTCAATTTCTGTT-TCAATTTATATTTTTC
** * * * *
15077154 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAAGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTCAATTTC
*
15077219 TGTCTT-TCAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTC--GGAACACGCTGAGGT
65 TGT-TTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG--CACGCTGAGGT
*
15077281 AATTTAAATTTCTG-------------TTTTC
126 AATTTCAATTTCTGTTTCAATTTATATTTTTC
* ** * * *
15077300 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGTCACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTCAATTTC
*
15077365 TGTTT-TCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC--GGTTCACATGCTGAG
65 TGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG--CAC--GCTGAG
*
15077427 GTATTTTCAATTTCTGT
124 GTAATTTCAATTTCTGT
15077444 CTTTCAAAAA
Statistics
Matches: 1683, Mismatches: 271, Indels: 392
0.72 0.12 0.17
Matches are distributed among these distances:
127 69 0.04
128 5 0.00
136 2 0.00
137 2 0.00
139 2 0.00
140 6 0.00
141 23 0.01
142 1 0.00
143 1 0.00
144 83 0.05
145 161 0.10
146 186 0.11
147 74 0.04
148 24 0.01
149 15 0.01
150 59 0.04
151 133 0.08
152 76 0.05
153 33 0.02
154 32 0.02
155 10 0.01
156 2 0.00
157 55 0.03
158 4 0.00
159 61 0.04
160 74 0.04
162 70 0.04
163 123 0.07
164 14 0.01
165 64 0.04
166 15 0.01
167 5 0.00
168 23 0.01
169 5 0.00
170 30 0.02
171 14 0.01
173 1 0.00
175 6 0.00
177 1 0.00
178 1 0.00
179 2 0.00
181 21 0.01
182 5 0.00
183 12 0.01
184 32 0.02
185 4 0.00
186 2 0.00
188 1 0.00
189 8 0.00
191 31 0.02
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (157 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCAATTTCT
GTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTT
CAATTTCTGTTTCAATTTATATTTTTC
Found at i:15075487 original size:90 final size:89
Alignment explanation
Indices: 15075374--15075538 Score: 285
Period size: 90 Copynumber: 1.8 Consensus size: 89
15075364 TCTGTTTGTC
* *
15075374 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTC
15075439 TGCTTTTCAATTTATATTTTTCAA
66 TGCTTTTCAATTTATATTTTTCAA
* *
15075463 AAAAATTCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTT
1 AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTT
15075528 CTGCTTTTCAA
65 CTGCTTTTCAA
15075539 AAAAATCAAC
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
89 5 0.07
90 66 0.93
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (89 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTC
TGCTTTTCAATTTATATTTTTCAA
Found at i:15075724 original size:322 final size:323
Alignment explanation
Indices: 15075135--15075759 Score: 916
Period size: 322 Copynumber: 1.9 Consensus size: 323
15075125 TATTTTCAAA
* * *
15075135 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGACACGCTGAGGTAATTTCAAT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAAT
* ** *
15075200 TTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
66 TTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAG-CACACGCCGAG
* *
15075265 GTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAAAAATCAACTCATATTACGAGAAATGAG
130 GTATTTTCAATTTCTG--TTTCAATTTATGCCTTTCAAAAATCAAATCATATTACGAGAAATGAG
*
15075330 TTGAGCCTCATGACACGCTGAGGTGATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGA
193 TTGAGCCTCAGGACACGCTGAGGTGATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGA
*
15075395 GAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAATT-TCAATTTCTGCTTTTCAATTTATATTTT
258 GAGGTGAGTTGAGCCTCAAGGCACGCTGAGGT-ATTGTCAATTTCTGCTTTTCAATTTATATTTT
15075459 TC
322 TC
* * * *
15075461 AAAAAAATTCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAAT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAAT
* * * **
15075526 TTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACTCGTTGAG
66 TTCTG-TTGTCAAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGCACACGCCGAG
** * **
15075590 GTATTTTCAATTTCTG-TTCAATTTATGTTTTTCAAAAATCAAATCATATTGCGAGAGGTGAGTT
130 GTATTTTCAATTTCTGTTTCAATTTATGCCTTTCAAAAATCAAATCATATTACGAGAAATGAGTT
*
15075654 GAGCCTCAGGACACGCTGAGGT-ATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAG
195 GAGCCTCAGGACACGCTGAGGTGA-TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAG
**
15075718 AGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTT
259 AGGTGAGTTGAGCCTCAAGGCACGCTGAGGTATTGTCAATTT
15075760 TTGTGTTTTA
Statistics
Matches: 268, Mismatches: 28, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
321 4 0.01
322 136 0.51
325 23 0.09
326 63 0.24
327 42 0.16
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (323 bp):
AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAAT
TTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGCACACGCCGAGG
TATTTTCAATTTCTGTTTCAATTTATGCCTTTCAAAAATCAAATCATATTACGAGAAATGAGTTG
AGCCTCAGGACACGCTGAGGTGATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAG
GTGAGTTGAGCCTCAAGGCACGCTGAGGTATTGTCAATTTCTGCTTTTCAATTTATATTTTTC
Found at i:15076057 original size:116 final size:117
Alignment explanation
Indices: 15075849--15076068 Score: 336
Period size: 116 Copynumber: 1.9 Consensus size: 117
15075839 TCAAGAATCA
*
15075849 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGC
* *
15075914 GAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
66 GAGAAGTGAGTCGAGCCTCAGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
* **
15075966 ACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTTATTT-TTGTTTTTCAAAATCAACTCATATTG
1 ACTCATATTGCGAGAGGTGAGTTGAA-CCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTG
* * *
15076029 CTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTT
65 CGAGAAGTGAGTCGAGCCTCAGGGCACGCTGAGGTATTTT
15076069 CAATTTTTGT
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
116 61 0.66
117 32 0.34
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (117 bp):
ACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGC
GAGAAGTGAGTCGAGCCTCAGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
Found at i:15076118 original size:72 final size:73
Alignment explanation
Indices: 15075999--15076261 Score: 388
Period size: 73 Copynumber: 3.6 Consensus size: 73
15075989 AAGCCTTTTT
* * * * * *
15075999 ATTTTTGTTTTTCAA-AATCAACTCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGG
1 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGG
*
15076063 TATTTTCA
66 TAATTTCA
* * **
15076071 ATTTTTGTGTT-TTAA-TTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAG
1 ATTTCTGT-TTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAG
15076134 GTAATTTCA
65 GTAATTTCA
15076143 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGG
1 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGG
15076208 TAATTTCA
66 TAATTTCA
*
15076216 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGA
15076262 ACCTTTCAAT
Statistics
Matches: 175, Mismatches: 13, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
71 2 0.01
72 71 0.41
73 102 0.58
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.34
Consensus pattern (73 bp):
ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGG
TAATTTCA
Found at i:15076167 original size:388 final size:388
Alignment explanation
Indices: 15075610--15076340 Score: 1173
Period size: 388 Copynumber: 1.9 Consensus size: 388
15075600 TTTCTGTTCA
*
15075610 ATTTATGTTTTTCAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 ATTTATGTTTTTCAAAAATCAAATCATATTGCGAGAGGTGAGTCGAGCCTCAGGACACGCTGAGG
* *
15075675 TATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCA
66 TATTTTCAATTTCTGTTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * * **
15075740 CGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCT
130 CGATGAGGTATTGTCAATTTCTGTGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
15075805 CAGGACCCGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGG
195 CAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGG
* * *
15075870 TTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGG
260 TTGAACCTTTCAATTTCTACTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAG
* *
15075935 GGCACGCTGAGGTATTTTTAGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTT
325 GGCACCCCGAGGTATTTTTAGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTT
* * * *
15075999 ATTTTTGTTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGG
1 ATTTATGTTTTTCAAAAATCAAATCATATTGCGAGAGGTGAGTCGAGCCTCAGGACACGCTGAGG
* **
15076063 TATTTTCAATTTTTGTGTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
66 TATTTTCAATTTCTGT-TTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
15076127 CGATGAGGTAATT-TCAATTTCTGT-TTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAG
130 CGATGAGGT-ATTGTCAATTTCTGTGTT-TCAA-AATCAACTCATATTGCGAGAGGTGAGTTGAG
15076190 CCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGT
192 CCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGT
* *
15076255 GGGTTGAACCTTTCAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCT
257 GGGTTGAACCTTTCAATTTCTACTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCT
*
15076320 CAGGTCACCCCGAGGTATTTT
322 CAGGGCACCCCGAGGTATTTT
15076341 CAATTTCTGT
Statistics
Matches: 314, Mismatches: 24, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
386 2 0.01
387 60 0.19
388 236 0.75
389 16 0.05
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (388 bp):
ATTTATGTTTTTCAAAAATCAAATCATATTGCGAGAGGTGAGTCGAGCCTCAGGACACGCTGAGG
TATTTTCAATTTCTGTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GATGAGGTATTGTCAATTTCTGTGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
AGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGT
TGAACCTTTCAATTTCTACTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGG
GCACCCCGAGGTATTTTTAGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTT
Found at i:15076296 original size:54 final size:54
Alignment explanation
Indices: 15076211--15076319 Score: 166
Period size: 54 Copynumber: 2.0 Consensus size: 54
15076201 GATGAGGTAA
* *
15076211 TTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACC
1 TTTCAATTTCTCTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACC
* *
15076265 TTTCAATTTCTACTTTTTCAA-AATCAGCTCATATTGCGAGAGGTGAGTTGAACC
1 TTTCAATTTCT-CTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACC
15076319 T
1 T
15076320 CAGGTCACCC
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 43 0.86
55 7 0.14
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (54 bp):
TTTCAATTTCTCTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACC
Found at i:15076511 original size:55 final size:55
Alignment explanation
Indices: 15076437--15076583 Score: 233
Period size: 55 Copynumber: 2.7 Consensus size: 55
15076427 TTTTAGTTTA
*
15076437 TGTTTCAAAAATCAACTCATGTTGGGAGAGGTGAGTTAAGCCTTTTAATTTCTGT
1 TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGT
**
15076492 TGTTTCAAAAATCCTCTCATGTTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGT
1 TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGT
*
15076547 T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
1 TGTTTC--AAAAATCAACTCATGTTGCGAGAGGTGAGT
15076584 GGACCTCAGG
Statistics
Matches: 84, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
54 4 0.05
55 53 0.63
56 27 0.32
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (55 bp):
TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGT
Found at i:15076816 original size:74 final size:74
Alignment explanation
Indices: 15076534--15077486 Score: 1104
Period size: 74 Copynumber: 12.7 Consensus size: 74
15076524 GAGTTAAGCC
** * *
15076534 TTTT-AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTGGA-CCTCAGGACA
1 TTTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
15076597 CGCTGAGGTA
65 CGCTGAGGTA
* * *
15076607 ATTTCAATTTCTGTTGTCAAAAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTT
1 TTTTCAATTTCTGTTTTC-------AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
*
15076672 AAGACATGCTGAGGTA
59 AAGACACGCTGAGGTA
* * *
15076688 CTTTCAATTTTTGTCTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
15076751 CGTTGAGGTA
65 CGCTGAGGTA
* ** *
15076761 TTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
15076826 GCTGAGGTA
66 GCTGAGGTA
* *
15076835 ATTTCAATTTCTGTTGTCAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
1 TTTTCAATTTCTGTTTTC----AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
*
15076900 ACATGCTGAGGTA
62 ACACGCTGAGGTA
** *
15076913 TTTTCAATTTCTGTTTTC--AAATTTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
15076976 GTTGAGGTA
66 GCTGAGGTA
*
15076985 TTTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
15077048 GTTGAGGTA
66 GCTGAGGTA
* * * ** * *
15077057 TTTTCAATTTTTGTTTTCAAAAAAATCAACTTATATTGTGAGAGGTGAGTTGAGCCTCAGGACAA
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
15077122 GCTGAGGTA
66 GCTGAGGTA
* * *
15077131 ATTTCAATTTTTGTTGTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
1 TTTTCAATTTCTGTTTTC---AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
* *
15077196 CATGCTGAAGTA
63 CACGCTGAGGTA
* * ** *
15077208 TTTTCAATTTTTGTCTTTC-AAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTC-GGAAC
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-AC
15077271 ACGCTGAGGTA
64 ACGCTGAGGTA
* * * *
15077282 ATTTAAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGTCAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
15077345 GTTGAGGTA
66 GCTGAGGTA
* ** *
15077354 TTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCA
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---A
*
15077418 CATGCTGAGGTA
63 CACGCTGAGGTA
**
15077430 TTTTCAATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTGT-TTTC---AAAAAAATCAACTCATATTGCGAGAAATGAGTTGA
15077487 ACTTCAGATC
Statistics
Matches: 761, Mismatches: 86, Indels: 59
0.84 0.09 0.07
Matches are distributed among these distances:
72 201 0.26
73 76 0.10
74 226 0.30
76 24 0.03
77 66 0.09
78 70 0.09
80 66 0.09
81 29 0.04
82 3 0.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
GCTGAGGTA
Found at i:15077362 original size:297 final size:296
Alignment explanation
Indices: 15076552--15077486 Score: 1392
Period size: 297 Copynumber: 3.1 Consensus size: 296
15076542 TCTGTTTTTC
** * * * * *
15076552 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGA-CCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAAGTATTTTCAATT
* * *
15076616 TCTGTTGTCAAAAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACATGC
66 TCTGTTTTC--------AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGC
* *
15076681 TGAGGTACTTTCAATTTTTGTCTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
123 TGAGGTAATTTCAATTTCTGT-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
15076746 AGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGT
187 AGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGT
*
15076811 TGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAA
252 TGAGCCTCAGGACAAGCTGAGGTAATTTCAATTTCTGTTGTC-AAA
*
15076857 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAAGTATTTTCAATT
** * * *
15076922 TCTGTTTTC-AAATTTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
66 TCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAA
15076986 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
131 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
* *
15077051 GAGGTATTTTCAATTTTTGTTTTCAAAAAAATCAACTTATATTGTGAGAGGTGAGTTGAGCCTCA
196 GAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCA
*
15077116 GGACAAGCTGAGGTAATTTCAATTTTTGTTGTCAAA
261 GGACAAGCTGAGGTAATTTCAATTTCTGTTGTCAAA
15077152 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAAGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAAGTATTTTCAATT
* * ** *
15077217 TTTGTCTTTCAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTC-GGAACACGCTGAGGT
66 TCTGT-TTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGCTGAGGT
* *
15077281 AATTTAAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGTCACG
129 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
15077346 TTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT
194 TTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT
* * *
15077411 C-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAA
259 CAGG---ACAAGCTGAGGTAATTTCAATTTCTGT-TGTCAAA
**
15077452 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGA
15077487 ACTTCAGATC
Statistics
Matches: 582, Mismatches: 40, Indels: 21
0.91 0.06 0.03
Matches are distributed among these distances:
295 71 0.12
296 153 0.26
297 229 0.39
299 24 0.04
300 39 0.07
305 32 0.05
306 34 0.06
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.32
Consensus pattern (296 bp):
AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAAGTATTTTCAATT
TCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAA
TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
GAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCA
GGACAAGCTGAGGTAATTTCAATTTCTGTTGTCAAA
Found at i:15078290 original size:17 final size:17
Alignment explanation
Indices: 15078224--15078287 Score: 69
Period size: 17 Copynumber: 3.8 Consensus size: 17
15078214 CATTAAGCCC
15078224 CCAAAAAAAAAACCTAA
1 CCAAAAAAAAAACCTAA
*
15078241 CCAAAAAAAAAA--GAA
1 CCAAAAAAAAAACCTAA
**
15078256 GAAAAAAGAAAAACCTAA
1 CCAAAAA-AAAAACCTAA
15078274 CCCAAAAAAAAAAC
1 -CCAAAAAAAAAAC
15078288 TAAGAAACCC
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
15 7 0.19
16 5 0.14
17 12 0.32
18 8 0.22
19 5 0.14
ACGTcount: A:0.73, C:0.19, G:0.05, T:0.03
Consensus pattern (17 bp):
CCAAAAAAAAAACCTAA
Found at i:15086645 original size:7 final size:7
Alignment explanation
Indices: 15086628--15086656 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
15086618 ATTACATGTA
15086628 TTTTTAG
1 TTTTTAG
15086635 -TTTTAG
1 TTTTTAG
15086641 TTTTTAG
1 TTTTTAG
15086648 TTTTTAG
1 TTTTTAG
15086655 TT
1 TT
15086657 GAATTCAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.72
Consensus pattern (7 bp):
TTTTTAG
Found at i:15095297 original size:14 final size:14
Alignment explanation
Indices: 15095278--15095305 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15095268 AAACCATGGC
15095278 TTCTTTTCTACATA
1 TTCTTTTCTACATA
15095292 TTCTTTTCTACATA
1 TTCTTTTCTACATA
15095306 AATGTGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.57
Consensus pattern (14 bp):
TTCTTTTCTACATA
Found at i:15096593 original size:52 final size:52
Alignment explanation
Indices: 15096531--15096643 Score: 199
Period size: 52 Copynumber: 2.2 Consensus size: 52
15096521 TACTATTATA
* *
15096531 CATATATATAATTTTTGATAAAATTAGCTCTATTCTATGTACATTATTGTTTT
1 CATAT-TATAATTTCTGATAAAATTAGCTCTATTCTATGTACACTATTGTTTT
15096584 CATATTATAATTTCTGATAAAATTAGCTCTATTCTATGTACACTATTGTTTT
1 CATATTATAATTTCTGATAAAATTAGCTCTATTCTATGTACACTATTGTTTT
15096636 CATATTAT
1 CATATTAT
15096644 TTTATGTAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 53 0.91
53 5 0.09
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.50
Consensus pattern (52 bp):
CATATTATAATTTCTGATAAAATTAGCTCTATTCTATGTACACTATTGTTTT
Found at i:15096672 original size:29 final size:31
Alignment explanation
Indices: 15096640--15096716 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 31
15096630 TGTTTTCATA
15096640 TTATTTTATGTA-A-ATATTTTCTTTTAAAT
1 TTATTTTATGTATATATATTTTCTTTTAAAT
*
15096669 TTATTATATATATGTATATATTTTTTCTTTTAAAT
1 TTA-T-T-T-TATGTATATATATTTTCTTTTAAAT
15096704 TTA-TTTATGTATA
1 TTATTTTATGTATA
15096717 ATTTGGTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
29 3 0.07
30 9 0.22
31 2 0.05
32 2 0.05
33 6 0.15
34 1 0.02
35 18 0.44
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (31 bp):
TTATTTTATGTATATATATTTTCTTTTAAAT
Found at i:15099894 original size:48 final size:48
Alignment explanation
Indices: 15099825--15100154 Score: 507
Period size: 48 Copynumber: 6.8 Consensus size: 48
15099815 CTTGTGGTGA
** * *
15099825 ATATGTGGTAAAGCCGAGCGGCTAATGTGAAATATATGTGTGATACGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
** *
15099873 ATATGTGGTAAAGCCGAGCGGCTAATGTGAAATATATGTGTGATACGAAT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG--T
* *
15099923 ATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATTTGTGTGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
* *
15099971 ATATGTGGTAAAGCCGAATGGCTAATCTGAAATATGTGTGTGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
*
15100019 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTGTGTGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
*
15100067 ATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
* *
15100115 ATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTGTG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
15100155 GTAAAGCCGA
Statistics
Matches: 267, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
48 225 0.84
50 42 0.16
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.32
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
Found at i:15100065 original size:96 final size:96
Alignment explanation
Indices: 15099828--15100274 Score: 523
Period size: 96 Copynumber: 4.8 Consensus size: 96
15099818 GTGGTGAATA
** * * **
15099828 TGTGGTAAAGCCGAGCGGCTAATGTGAAATATATGTGTGATACGAATATGTGGTAAAGCCGAGCG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATG
*
15099893 GCTAATGTGAAATATATGTGTGATACGAATATG
66 GCTAATGTGAAATATATGTGTGATATG--TATG
*
15099926 TGTGGTAAAGCCGAATGGCTAATGTGAAATATTTGTGTGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATG
* * *
15099991 GCTAATCTGAAATATGTGTGTGATATGTATA
66 GCTAATGTGAAATATATGTGTGATATGTATG
* *
15100022 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTGTGTGATATGTATGTGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATG
15100087 GCTAATGTGAAATATATGTGTGATATGTATG
66 GCTAATGTGAAATATATGTGTGATATGTATG
* ** * * *
15100118 TGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTGTG----GTA-AAGCCG-AATGGCTAAT-
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATG
* * * * *
15100174 G-TGAA----ATATATGTGTGAT-ATGTATGTG
66 GCT-AATGTGAAATATATGTG-TGATATGTATG
15100201 --TGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATG
15100264 GCTAATGTGAA
66 GCTAATGTGAA
15100275 TGTTGTAACA
Statistics
Matches: 297, Mismatches: 36, Indels: 36
0.80 0.10 0.10
Matches are distributed among these distances:
81 24 0.08
82 2 0.01
83 24 0.08
84 1 0.00
86 1 0.00
87 6 0.02
88 10 0.03
89 9 0.03
90 6 0.02
91 1 0.00
94 9 0.03
95 2 0.01
96 120 0.40
98 82 0.28
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (96 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATG
GCTAATGTGAAATATATGTGTGATATGTATG
Found at i:15100106 original size:129 final size:130
Alignment explanation
Indices: 15100018--15100274 Score: 403
Period size: 129 Copynumber: 2.0 Consensus size: 130
15100008 GTGTGATATG
*
15100018 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTGTGTGATATGTATGTGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCG
* * **
15100083 AATGGCTAATGTGAAATATATGT-GTGATATGTATGTGTGGTAAAGCCGAATGGCTAATGTGAAA
66 AATGGCTAATGTGAAATATATGTGGTGATAAGTACGAATGGTAAAGCCGAATGGCTAATGTGAAA
*
15100147 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCG
* * *
15100212 AATGGCTAATGTGAAATATATGT-GTGATATGTA-TATGTGGTAAAGCCGAATGGCTAATGTGAA
66 AATGGCTAATGTGAAATATATGTGGTGATAAGTACGA-ATGGTAAAGCCGAATGGCTAATGTGAA
15100275 TGTTGTAACA
Statistics
Matches: 123, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
129 123 1.00
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.32
Consensus pattern (130 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCG
AATGGCTAATGTGAAATATATGTGGTGATAAGTACGAATGGTAAAGCCGAATGGCTAATGTGAAA
Found at i:15100154 original size:81 final size:81
Alignment explanation
Indices: 15100066--15100235 Score: 331
Period size: 81 Copynumber: 2.1 Consensus size: 81
15100056 GTGTGATATG
15100066 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCG
1 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCG
15100131 AATGGCTAATGTGAAA
66 AATGGCTAATGTGAAA
15100147 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCG
1 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCG
15100212 AATGGCTAATGTGAAA
66 AATGGCTAATGTGAAA
*
15100228 TATATGTG
1 TATGTGTG
15100236 TGATATGTAT
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 88 1.00
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.32
Consensus pattern (81 bp):
TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCG
AATGGCTAATGTGAAA
Found at i:15100156 original size:33 final size:33
Alignment explanation
Indices: 15100114--15100187 Score: 139
Period size: 33 Copynumber: 2.2 Consensus size: 33
15100104 GTGTGATATG
15100114 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAA
15100147 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAA
*
15100180 TATATGTG
1 TATGTGTG
15100188 TGATATGTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (33 bp):
TATGTGTGGTAAAGCCGAATGGCTAATGTGAAA
Found at i:15100206 original size:48 final size:48
Alignment explanation
Indices: 15100147--15100274 Score: 247
Period size: 48 Copynumber: 2.7 Consensus size: 48
15100137 TAATGTGAAA
15100147 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
15100195 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
*
15100243 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGTGGTAAAGCCGAATGGCTAATGTGAA
15100275 TGTTGTAACA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 79 1.00
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
Found at i:15100369 original size:37 final size:37
Alignment explanation
Indices: 15100319--15100427 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
15100309 GGAAATATAT
15100319 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
15100356 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
15100393 TCCGGGGAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
15100428 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:15102804 original size:24 final size:24
Alignment explanation
Indices: 15102747--15102798 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
15102737 TTTCTAGAAG
*
15102747 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGTATAATAT
15102771 ATTTAGCATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGTATAATAT
15102795 ATTT
1 ATTT
15102799 GACATTGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGTATAATAT
Found at i:15102809 original size:24 final size:24
Alignment explanation
Indices: 15102747--15102810 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
15102737 TTTCTAGAAG
* *
15102747 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTGATTAGTATAATAT
*
15102771 ATTTAGCATTTATTAGTATAATAT
1 ATTTAGCATTGATTAGTATAATAT
15102795 ATTT-GACATTGATTAG
1 ATTTAG-CATTGATTAG
15102811 AATTAGGATT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
23 1 0.03
24 36 0.97
ACGTcount: A:0.36, C:0.03, G:0.11, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTGATTAGTATAATAT
Found at i:15107246 original size:24 final size:24
Alignment explanation
Indices: 15107189--15107240 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15107179 TTTCTAGAAG
* * *
15107189 ATTTAGTAATTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
15107213 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
15107237 ATTT
1 ATTT
15107241 GACATTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:15107251 original size:24 final size:24
Alignment explanation
Indices: 15107200--15107252 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
15107190 TTTAGTAATT
* *
15107200 ATTAGTATAATATATTTAGCATTT
1 ATTAGCATAATATATTTAGCATTG
15107224 ATTAGCATAATATATTT-GACATTG
1 ATTAGCATAATATATTTAG-CATTG
15107248 ATTAG
1 ATTAG
15107253 AATTAGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (24 bp):
ATTAGCATAATATATTTAGCATTG
Found at i:15114485 original size:32 final size:32
Alignment explanation
Indices: 15114447--15114511 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
15114437 TAGGCAAGAA
15114447 GTAGGAAATTTGCTTTCAGCGGGATTTATTAG
1 GTAGGAAATTTGCTTTCAGCGGGATTTATTAG
15114479 GTAGGAAATTTGCTTTCAGCGGGATTTATTAG
1 GTAGGAAATTTGCTTTCAGCGGGATTTATTAG
15114511 G
1 G
15114512 GAAGTGGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.09, G:0.29, T:0.37
Consensus pattern (32 bp):
GTAGGAAATTTGCTTTCAGCGGGATTTATTAG
Found at i:15116050 original size:17 final size:17
Alignment explanation
Indices: 15116028--15116087 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
15116018 TAAGCCCCCC
15116028 AAAAAAAACCTAACCCA
1 AAAAAAAACCTAACCCA
*** ***
15116045 AAAAAAAAAAGAAGAAA
1 AAAAAAAACCTAACCCA
15116062 AAAGAAAAACCTAACCCA
1 AAA-AAAAACCTAACCCA
15116080 AAAAAAAA
1 AAAAAAAA
15116088 AAGAAAAAAG
Statistics
Matches: 30, Mismatches: 12, Indels: 2
0.68 0.27 0.05
Matches are distributed among these distances:
17 19 0.63
18 11 0.37
ACGTcount: A:0.75, C:0.17, G:0.05, T:0.03
Consensus pattern (17 bp):
AAAAAAAACCTAACCCA
Found at i:15116051 original size:18 final size:18
Alignment explanation
Indices: 15116028--15116088 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
15116018 TAAGCCCCCC
15116028 AAAAAAAACCTAACCCAA
1 AAAAAAAACCTAACCCAA
** **
15116046 AAAAAAAA-AGAA-GAAA
1 AAAAAAAACCTAACCCAA
15116062 AAAGAAAAACCTAACCCAA
1 AAA-AAAAACCTAACCCAA
15116081 AAAAAAAA
1 AAAAAAAA
15116089 AGAAAAAAGA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
16 5 0.16
17 7 0.22
18 15 0.47
19 5 0.16
ACGTcount: A:0.75, C:0.16, G:0.05, T:0.03
Consensus pattern (18 bp):
AAAAAAAACCTAACCCAA
Found at i:15116075 original size:35 final size:34
Alignment explanation
Indices: 15116031--15116120 Score: 143
Period size: 32 Copynumber: 2.7 Consensus size: 34
15116021 GCCCCCCAAA
15116031 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAA-AAGAAAAAAG
15116066 AAAAACCTAACCC--AAAAAAAAAAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAAAGAAAAAAG
15116098 AAAAACCTAA--CAAAAAAAAAAAA
1 AAAAACCTAACCCAAAAAAAAAAAA
15116121 CTAAAAAAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
30 1 0.02
32 30 0.57
33 9 0.17
35 13 0.25
ACGTcount: A:0.77, C:0.14, G:0.06, T:0.03
Consensus pattern (34 bp):
AAAAACCTAACCCAAAAAAAAAAAAAGAAAAAAG
Found at i:15116176 original size:12 final size:12
Alignment explanation
Indices: 15116159--15116188 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
15116149 TCCCACTTGC
15116159 CCCATTTTTCCT
1 CCCATTTTTCCT
15116171 CCCATTTTTCCT
1 CCCATTTTTCCT
15116183 CCCATT
1 CCCATT
15116189 GTCTACCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.43, G:0.00, T:0.47
Consensus pattern (12 bp):
CCCATTTTTCCT
Found at i:15118682 original size:12 final size:12
Alignment explanation
Indices: 15118665--15118700 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
15118655 ATTCATTTGA
15118665 CATTCATGCATT
1 CATTCATGCATT
15118677 CATTCATGCATT
1 CATTCATGCATT
*
15118689 CATTCATACATT
1 CATTCATGCATT
15118701 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:15124097 original size:71 final size:70
Alignment explanation
Indices: 15123903--15124126 Score: 304
Period size: 72 Copynumber: 3.1 Consensus size: 70
15123893 GAGTTAAGCC
15123903 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGGCACGCT
15123968 GAGGTAT
64 GAGGTAT
* * ** * * * * * *
15123975 TTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAAAGATGAGTTGAGCCTCAAGACACGTT
1 TTTTAATTTTTGT-TTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGGCACGCT
15124040 GAGGTAT
64 GAGGTAT
*
15124047 TTTTAATTGTTGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGCACGCTGA
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGCACGCTGA
15124112 GGTAT
66 GGTAT
*
15124117 TTTTAGTTTT
1 TTTTAATTTT
15124127 AAATTGACTC
Statistics
Matches: 127, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
70 21 0.17
71 36 0.28
72 70 0.55
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (70 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGCACGCTGA
GGTAT
Found at i:15124213 original size:185 final size:196
Alignment explanation
Indices: 15123997--15124438 Score: 512
Period size: 199 Copynumber: 2.3 Consensus size: 196
15123987 TGTTTTAATT
* * * *
15123997 TCAACTCATATTGCGAAAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT-T
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTGTTGTGT
* * *
15124061 TTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGT-A-TT-TTT-
66 TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTATTTC
** **
15124121 AGTTT-T-A-AATTGACTCATACTGCGAGAGGTGAGTT-AAGCCTTTT-ATTT-TGGTTTTTCAA
131 AGTTTGTAAGAATCAACTCATACTGCGAGAGGTGAGTTGAA-CCTTTTAATTTCTACTTTTTCAA
15124180 AA
195 AA
* ** * *
15124182 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTGTTGTGT
* **
15124247 TTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATT
66 TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTT--ATT
* * *
15124312 TCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTC
129 TCAGTTTGT-AAGAATCAACTCATACTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTC
15124377 AAAA
193 AAAA
* * * * * *
15124381 TCAGCTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCATGCCGAGGTATTTTCAATT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATT
15124439 TCTGTCTTCA
Statistics
Matches: 213, Mismatches: 29, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
185 54 0.25
186 37 0.17
187 12 0.06
188 1 0.00
189 2 0.01
192 3 0.01
193 4 0.02
194 1 0.00
196 1 0.00
197 30 0.14
198 6 0.03
199 62 0.29
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (196 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTGTTGTGT
TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTATTTC
AGTTTGTAAGAATCAACTCATACTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAA
A
Found at i:15124280 original size:257 final size:259
Alignment explanation
Indices: 15123738--15124354 Score: 1078
Period size: 257 Copynumber: 2.4 Consensus size: 259
15123728 TCAAGTAAAA
*
15123738 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGTTC
1 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGTTT
*
15123803 TCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
66 TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
* *
15123868 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCA
131 TAAATTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTTAATTTTGGTTTTTCAAAATCAACTCA
15123933 TATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
196 TATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
*
15123997 TCAACTCATATTGCGAAAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGTTT
1 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGTTT
*
15124062 TCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTTAGTTT
66 TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
15124126 TAAATTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTT-ATTTTGGTTTTTCAAAATCAACTCA
131 TAAATTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTTAATTTTGGTTTTTCAAAATCAACTCA
15124190 TATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
196 TATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
* * * * *
15124254 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATT-TCTGTT
1 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGT-TGTT
*
15124318 TGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
65 T-TCAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
15124355 ACCTTTTAAT
Statistics
Matches: 341, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
256 1 0.00
257 145 0.43
258 67 0.20
259 128 0.38
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.36
Consensus pattern (259 bp):
TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGTTT
TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
TAAATTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTTAATTTTGGTTTTTCAAAATCAACTCA
TATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
Found at i:15124282 original size:72 final size:73
Alignment explanation
Indices: 15124171--15124354 Score: 239
Period size: 72 Copynumber: 2.5 Consensus size: 73
15124161 TTTTATTTTG
* * * * * *
15124171 GTTTTTCAA-AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
1 GTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTT
*
15124235 CAATTTTT
66 CAATTTCT
* **
15124243 GTGTT-TTAA-TTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATT
1 GT-TTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATT
15124306 TCAATTTCT
65 TCAATTTCT
*
15124315 GTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 GTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGA
15124355 ACCTTTTAAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
71 2 0.02
72 65 0.68
73 29 0.30
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (73 bp):
GTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTT
CAATTTCT
Found at i:15124528 original size:88 final size:88
Alignment explanation
Indices: 15124379--15124712 Score: 366
Period size: 88 Copynumber: 3.7 Consensus size: 88
15124369 ACTTTTTCAA
*
15124379 AATCAGCTCATATTGCGAGAGGTGAGTT-AAGCCTCAGGTCATGCCGAGGTATTTTCAATTTCTG
1 AATCAGCTCATATTGCGAGAGGTGAGTTGAA-CCTCAGGTCACGCCGAGGTATTTTCAATTTCTG
15124443 TCTTCATTATTATGTTTTTGAAAG
65 TCTTCATTATTATGTTTTTGAAAG
*
15124467 AATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGCCGAGGTATTTTTAATTTCTGT
1 AATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
*
15124532 TTTCATTATTATGTTTTTGAAAG
66 CTTCATTATTATGTTTTTGAAAG
* ** * * * *
15124555 AATCAACTTGTATTGCGAAAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGGT--CACGCCGAGGTATTTTCAATTTCT
* * * ** *
15124620 GTTTTTCAAT-TTCTGTCTTTCAAAAAAA
64 G-TCTTCATTATTATGT-TTT--TGAAAG
* * ** * * * * *
15124648 AATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGT
1 AATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
15124713 TTTTCAAAAA
Statistics
Matches: 211, Mismatches: 28, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
88 115 0.55
89 2 0.01
90 29 0.14
91 32 0.15
93 33 0.16
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (88 bp):
AATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
CTTCATTATTATGTTTTTGAAAG
Found at i:15124627 original size:14 final size:14
Alignment explanation
Indices: 15124608--15124642 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
15124598 CGCCGAGGTA
15124608 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
15124622 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
15124636 CTTTCAA
1 TTTTCAA
15124643 AAAAAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:15124699 original size:181 final size:176
Alignment explanation
Indices: 15124389--15124715 Score: 404
Period size: 181 Copynumber: 1.8 Consensus size: 176
15124379 AATCAGCTCA
* * * * *
15124389 TATTGCGAGAGGTGAGTTAAGCCTCAGGTCATGCCGAGGTATTTTCAATTTCTGTCTTCATTATT
1 TATTGCGAAAGGCGAGTTAAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCCGTCTTCAATATT
** * * ** * *
15124454 ATGTTTTTGAAAGAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGCCGAGGTAT
66 ATGTTTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGCCGAGGTAT
*
15124519 TTTTAATTTCTGTTTTCATTATTATGTTTTTGAAAGAATCAACTTG
131 TTTCAATTTCTGTTTTCATTATTATGTTTTTGAAAGAATCAACTTG
* *
15124565 TATTGCGAAAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAAT
1 TATTGCGAAAGGCGAGTTAAGCCTCAGGT--CACGCCGAGGTATTTTCAATTTCCG-TCTTCAAT
* * * * *
15124630 -TTCTGTCTTTCAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTG
63 ATTATGT-TTT--AAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGCCG
15124694 AGGTATTTTCAATTTCTGTTTT
125 AGGTATTTTCAATTTCTGTTTT
15124716 TCAAAAAAAT
Statistics
Matches: 124, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
176 26 0.21
178 28 0.23
179 9 0.07
181 61 0.49
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (176 bp):
TATTGCGAAAGGCGAGTTAAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCCGTCTTCAATATT
ATGTTTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGCCGAGGTAT
TTTCAATTTCTGTTTTCATTATTATGTTTTTGAAAGAATCAACTTG
Found at i:15124902 original size:84 final size:77
Alignment explanation
Indices: 15124622--15125690 Score: 478
Period size: 88 Copynumber: 13.2 Consensus size: 77
15124612 CAATTTCCGT
* ** *
15124622 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGA
1 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
*
15124687 CATGCTGAGGTA
66 CACGCTGAGGTA
*
15124699 TTTTCAATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
*
15124762 CACACTGAGGTA
66 CACGCTGAGGTA
* * * * *
15124774 ATTTCAATTTCTGT-TGTC--AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGT
1 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
*
15124836 CACACGCCGAGGTA
65 -ACACGCTGAGGTA
* *
15124850 TTTTCAATTTCTGCCTTTCAAAAAAAAAAATCATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
1 TTTTCAATTTCTGTCTTTC---AAAAAAAA--ATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * *
15124915 -TGGCTCACGCGCTGAGCTA
61 CAGG---ACACGCTGAGGTA
*
15124934 TTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
1 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--
* *
15124997 TACACACTGAGGTA
64 GACACGCTGAGGTA
* * * * * * *
15125011 TTTTTTCAATTTATATTTTTC--AAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCTCGG
1 --TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
15125074 GTCACATG-TCGAGGTA
64 G--ACACGCT-GAGGTA
** * * ** *
15125090 TTTTCAAAATCTGTTTTTTAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTCTTTCA-A--------AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
15125155 GCCT-TGGCTCACGTGCTGAGCTA
57 GCCTCAGG-ACAC--GCTGAGGTA
* *
15125178 TTTTCAATTTCTGTTTTTTTTTC-AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTT
1 TTTTCAATTTCTG----TCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC---
* * * * *
15125242 TTAATTTCTGCGAGA-GTTGAGTTGA
59 -----CTCAG-GACACGCTGAGGT-A
* * * *
15125267 GTCTTTTAATTTCTGTTTTTC----AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAG
1 -T-TTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* * *
15125328 ATCACACACTGAGGTTT
64 --GACACGCTGAGG-TA
*** * * * * *
15125345 TTTTTTTTTTTTTTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGT
1 TTTTCAATTTCTGTCTTTC-----A-A------AAAAAAATCAACTCATATTGCGAGAGGTGAGT
* *
15125410 TGAGCCTCGGGTCACATG-TCGAGGTA
54 TGAGCCTCAGG--ACACGCT-GAGGTA
** * * *
15125436 TTTTCAAAATCTGTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTCTTTCAAA---------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
15125501 GCCT-TGGCTCACGTGCTGAGCTA
57 GCCTCAGG-ACAC--GCTGAGGTA
* ** *
15125524 TTTTCAATTTCTATCTTTCAAAAAAAAAAATTTCAACTCATATTGCGAGAAATGAGTTGAGGCTC
1 TTTTCAATTTCTGTCTTTC--AAAAAAAAA--TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* *
15125589 AAGACACGTTGAGGTA
62 AGGACACGCTGAGGTA
* * * ** *
15125605 ATTTCAATTTCTGT-TTTC----AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGA
1 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
* *
15125665 TACGTTGAGGTA
66 CACGCTGAGGTA
*
15125677 ATTTCAATTTCTGT
1 TTTTCAATTTCTGT
15125691 TCAAAATGAG
Statistics
Matches: 777, Mismatches: 126, Indels: 183
0.72 0.12 0.17
Matches are distributed among these distances:
72 60 0.08
74 47 0.06
75 63 0.08
76 41 0.05
77 79 0.10
78 6 0.01
79 70 0.09
80 4 0.01
81 24 0.03
82 39 0.05
83 35 0.05
84 93 0.12
85 1 0.00
86 7 0.01
87 10 0.01
88 113 0.15
89 3 0.00
90 6 0.01
91 28 0.04
92 48 0.06
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
CACGCTGAGGTA
Found at i:15124970 original size:77 final size:77
Alignment explanation
Indices: 15124622--15125238 Score: 498
Period size: 79 Copynumber: 7.7 Consensus size: 77
15124612 CAATTTCCGT
* **
15124622 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CA
1 TTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-
** *
15124684 AGACATGCTGAGGTA
63 TCACACGCTGAGGTA
* *
15124699 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTC
*
15124761 ACACACTGAGGTA
65 ACACGCTGAGGTA
* * * * * *
15124774 ATTTCAATTTCTGT-TGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGG-TC
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTC
*
15124837 ACACGCCGAGGTA
65 ACACGCTGAGGTA
* *
15124850 TTTTCAATTTCTGCCTTTCAAAAAAAAAAATCATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
1 TTTTCAATTTCTGTCTTTC-----AAAAAA--ATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* *
15124915 TGGCTCACGCGCTGAGCTA
59 TGGCTCACACGCTGAGGTA
* * *
15124934 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATT
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTC
*
15124998 ACACACTGAGGTA
65 ACACGCTGAGGTA
* * * * * * * *
15125011 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
*
15125076 CACATG-TCGAGGTA
64 CACACGCT-GAGGTA
* *** *
15125090 TTTTCAAAATCTGTTTTTTAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTC--AA-----TTTCT-G--TCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** *
15125155 GCCTTGGCTCACGTGCTGAGCTA
55 GCCTTGGCTCACACGCTGAGGTA
*
15125178 TTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTCTG----TCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
15125239 TTTTTAATTT
Statistics
Matches: 440, Mismatches: 65, Indels: 65
0.77 0.11 0.11
Matches are distributed among these distances:
74 43 0.10
75 59 0.13
76 26 0.06
77 67 0.15
78 1 0.00
79 68 0.15
80 3 0.01
81 11 0.03
82 38 0.09
83 2 0.00
84 63 0.14
86 2 0.00
87 2 0.00
88 54 0.12
89 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CACGCTGAGGTA
Found at i:15125088 original size:79 final size:76
Alignment explanation
Indices: 15124622--15125238 Score: 498
Period size: 77 Copynumber: 7.7 Consensus size: 76
15124612 CAATTTCCGT
* * ** *
15124622 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG-
1 TTTTCAATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
15124686 -ACA-TGCTGAGGTA
64 CACAGT-C-GAGGTA
*
15124699 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
*
15124764 CACT-GAGGTA
66 CAGTCGAGGTA
* * * * *
15124774 ATTTCAATTTCTG-TTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
*
15124838 CACGCCGAGGTA
66 CA-GTCGAGGTA
** *
15124850 TTTTCAATTTCTGCCTTTCAAAAAAAAAAATCATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
1 TTTTCAATTTCTGTTTTTC-----AAAAAA--ATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * *
15124915 -TGGCTCAC-GCGCTGAGCTA
59 CAGG-TCACAG-TC-GAGGTA
* * *
15124934 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GT-
*
15124999 CACACT-GAGGTA
64 CACAGTCGAGGTA
* * * * * *
15125011 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
15125076 CACATGTCGAGGTA
64 CACA-GTCGAGGTA
** * *
15125090 TTTTCAAAATCTGTTTTTTAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTTTTTCA-A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* *
15125155 GCCT-TGGCTCAC-GTGCTGAGCTA
55 GCCTCAGG-TCACAGT-C-GAGGTA
15125178 TTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTCTG----TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
15125239 TTTTTAATTT
Statistics
Matches: 442, Mismatches: 55, Indels: 81
0.76 0.10 0.14
Matches are distributed among these distances:
74 48 0.11
75 57 0.13
76 18 0.04
77 79 0.18
78 6 0.01
79 68 0.15
81 5 0.01
82 36 0.08
83 3 0.01
84 56 0.13
86 2 0.00
87 3 0.01
88 54 0.12
91 1 0.00
92 6 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (76 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
CAGTCGAGGTA
Found at i:15125256 original size:30 final size:30
Alignment explanation
Indices: 15125220--15125281 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
15125210 CAACTCATAT
15125220 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
15125250 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
15125280 TG
1 TG
15125282 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:15125455 original size:14 final size:13
Alignment explanation
Indices: 15125436--15125471 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
15125426 TGTCGAGGTA
15125436 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
15125449 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
15125463 TTTTCAAAA
1 TTTTCAAAA
15125472 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:15125483 original size:346 final size:336
Alignment explanation
Indices: 15124934--15125584 Score: 1011
Period size: 346 Copynumber: 1.9 Consensus size: 336
15124924 CGCTGAGCTA
* *
15124934 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTA
1 TTTTCAATTTCTGTCTTTC-AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGATCA
*
15124999 CACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGTGAGATGTGAGT
65 CACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGT
* *
15125064 TGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTTAGATTCTGTTTTCAAAAATC
130 TGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTGTTTTCAAAAATC
* *
15125129 AACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTT
195 AACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTATCT
***** **
15125194 TTTTTTCAAAAAAA-TTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTCTGCGAGAG
260 TTCAAAAAAAAAAATTTCAACTCATATTGCGAGAAATGAGTTGAGCTTTTTAATTTCTGCGAGAG
15125258 TTGAGTTGAGTC
325 TTGAGTTGAGTC
*
15125270 TTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGATCAC
1 TTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGATCAC
*
15125333 ACACTGAGGTTTTTTTTTTTTTTTTTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTG
66 ACACTGAGG-------------TATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTG
15125398 CGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTG
118 CGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTG
15125463 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTT
183 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTT
15125528 CAATTTCTATCTTTCAAAAAAAAAAATTTCAACTCATATTGCGAGAAATGAGTTGAG
248 CAATTTCTATCTTTCAAAAAAAAAAATTTCAACTCATATTGCGAGAAATGAGTTGAG
15125585 GCTCAAGACA
Statistics
Matches: 285, Mismatches: 16, Indels: 17
0.90 0.05 0.05
Matches are distributed among these distances:
333 52 0.18
335 13 0.05
336 4 0.01
346 188 0.66
347 28 0.10
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (336 bp):
TTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGATCAC
ACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTT
GAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTGTTTTCAAAAATCA
ACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTATCTT
TCAAAAAAAAAAATTTCAACTCATATTGCGAGAAATGAGTTGAGCTTTTTAATTTCTGCGAGAGT
TGAGTTGAGTC
Found at i:15125633 original size:72 final size:73
Alignment explanation
Indices: 15125550--15125691 Score: 250
Period size: 72 Copynumber: 2.0 Consensus size: 73
15125540 TTCAAAAAAA
*
15125550 AAAATTTCAACTCATATTGCGAGAAATGAGTTGAGGCTCAAGACACGTTGAGGTAATTTCAATTT
1 AAAATTTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
15125615 CTGTTTTC
66 CTGTTTTC
* *
15125623 AAAA-TTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTAATTTCAATTT
1 AAAATTTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
15125687 CTGTT
66 CTGTT
15125692 CAAAATGAGT
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
72 62 0.94
73 4 0.06
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (73 bp):
AAAATTTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
CTGTTTTC
Found at i:15125702 original size:49 final size:49
Alignment explanation
Indices: 15125645--15125740 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
15125635 ATATTGTGAG
* *
15125645 AAATGAGTTGAGCCTCAAGATACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
15125694 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
15125741 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:15125795 original size:121 final size:121
Alignment explanation
Indices: 15125573--15125812 Score: 408
Period size: 121 Copynumber: 2.0 Consensus size: 121
15125563 ATATTGCGAG
* *
15125573 AAATGAGTTGAGGCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
15125638 TTGTGAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
15125694 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
15125759 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
15125813 TTTCAAAAAA
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
121 111 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:15125946 original size:75 final size:75
Alignment explanation
Indices: 15125694--15126046 Score: 466
Period size: 75 Copynumber: 4.7 Consensus size: 75
15125684 TTTCTGTTCA
* *
15125694 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
15125756 ATATTGCGAG
66 ATATTGCGAG
* *
15125766 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC---AAAAAAATCAA
*
15125831 CTCATATTGTGAG
63 CTCATATTGCGAG
*
15125844 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
15125909 ATATTGCGAG
66 ATATTGCGAG
** * *
15125919 AGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTGTC-AAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* *
15125982 GTATTGTGAG
66 ATATTGCGAG
** * *
15125992 AAGCGAGTTGAGCCTCAGGTCACACG-TCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCT-GAGGTATTTTCAATTTCTGTTTTTCAA
15126047 TTTCTGCCTT
Statistics
Matches: 250, Mismatches: 20, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
72 42 0.17
73 42 0.17
74 5 0.02
75 86 0.34
76 4 0.02
77 1 0.00
78 70 0.28
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCGAG
Found at i:15126139 original size:94 final size:94
Alignment explanation
Indices: 15125969--15126140 Score: 222
Period size: 94 Copynumber: 1.8 Consensus size: 94
15125959 TTCTGTTGTC
* * *
15125969 AAAAAATCAACTCGTATTGTGAGAAGCGAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAAGCGAGTTGAGCCTCAGGTCACACGTCGAGCTATTTTCAAT
* *
15126034 TTCCGTTTTTCAATTTCTGCCTTTCAAAA
66 TTCCATCTTTCAATTTCTGCCTTTCAAAA
* * * *
15126063 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCG-CTGAGCTATTTTCA
1 AAAAAATCAACTCATATTGCGAGAAGCGAGTTGAGCCTCAGG-TCACACGTC-GAGCTATTTTCA
*
15126126 ATTTCTATCTTTCAA
64 ATTTCCATCTTTCAA
15126141 AAAAATCAAC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
93 3 0.05
94 63 0.95
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (94 bp):
AAAAAATCAACTCATATTGCGAGAAGCGAGTTGAGCCTCAGGTCACACGTCGAGCTATTTTCAAT
TTCCATCTTTCAATTTCTGCCTTTCAAAA
Found at i:15126170 original size:77 final size:78
Alignment explanation
Indices: 15126062--15126424 Score: 347
Period size: 79 Copynumber: 4.5 Consensus size: 78
15126052 GCCTTTCAAA
*
15126062 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAA
15126127 TTTCTA-TCTTTC
66 TTTCTATTCTTTC
* * * *
15126139 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACTGAGGTATTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACACGCTGAGCTA--TTTT
*
15126203 CAATTTATATT-TTTC
63 CAATTTCTATTCTTTC
* * * * * *
15126218 AAAAAAATTAACTCATATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCT-GAGCTATTTTC-
* *
15126282 AAATCTGTTTTTCAGATTCTGTTT
64 -AA------TTTC-TATTCT-TTC
** * ***
15126306 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCATGTGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAA
*
15126371 TTTCTATTTTTTTTTC
66 TTTCTA---TTCTTTC
15126387 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
15126425 TTTTTAATTT
Statistics
Matches: 233, Mismatches: 31, Indels: 39
0.77 0.10 0.13
Matches are distributed among these distances:
76 3 0.01
77 54 0.23
78 1 0.00
79 65 0.28
80 7 0.03
81 7 0.03
82 32 0.14
85 3 0.01
86 5 0.02
87 1 0.00
88 54 0.23
89 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (78 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAA
TTTCTATTCTTTC
Found at i:15126314 original size:244 final size:239
Alignment explanation
Indices: 15125821--15126635 Score: 892
Period size: 254 Copynumber: 3.3 Consensus size: 239
15125811 TTTTTCAAAA
* ** ** * *
15125821 AAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CAAGACATGCTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACGTGCTGAGCTATTTTCAA
* * * *
15125883 TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA-GACACGCTGA
65 TTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAATCACACACTGA
* * * * * *
15125947 GGTA-ATTTCAATTTCTGTTGTCAAAAAATCAACTCGTATTGTGAGAAGCGAGTTGAGCCTCAGG
130 GGTATTTTTCAATTTCTTTTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GG
* ** * *
15126011 TCACACGTCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
194 TCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTG--TTTC
*
15126059 AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTT
1 ----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTT
*
15126124 CAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACA
62 CAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCA-ATCACACA
* * *
15126189 CTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATTAACTCATATTGCGAGATGTGAGTTGAG
126 CTGAGGTA-TTTTTCAATTTCT-TTTTTC-AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
15126254 CCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTC-AGATTCTGTTTTC
188 CCTC-GGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAG-TTCTG-TTTC
* *
15126308 -AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCATGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
*
15126372 TTCTATTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTCT
66 TTCTA----TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAA--TC-
* * * ** *
15126437 GCGAGAGTTGATTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGT
121 AC-ACA-CTGAGGT-A-T-TTTTCAATTTCT-TTTTTCAAAAAATCAACTCATATTGCGAGAAGT
* * * * **
15126500 GAGTTGAACCTTCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTC
180 GAGTTGAGCC-TCGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGTTTC
15126561 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
*
15126626 TTCTGTTTTT
66 TTCTATTTTT
15126636 AATGTCTGTT
Statistics
Matches: 493, Mismatches: 53, Indels: 46
0.83 0.09 0.08
Matches are distributed among these distances:
242 34 0.07
243 1 0.00
244 133 0.27
245 2 0.00
246 12 0.02
248 22 0.04
249 39 0.08
250 77 0.16
251 3 0.01
252 2 0.00
253 5 0.01
254 137 0.28
255 8 0.02
256 14 0.03
257 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (239 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAATCACACACTGAG
GTATTTTTCAATTTCTTTTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGTC
ACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGTTTC
Found at i:15126369 original size:88 final size:85
Alignment explanation
Indices: 15126220--15126670 Score: 323
Period size: 88 Copynumber: 5.2 Consensus size: 85
15126210 TATTTTTCAA
* * * * * *
15126220 AAAAATTAACTCATATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTC-GAGGTATTTTCAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG-CTCATGTCTGAGCTATTTTCAAT
*
15126284 ATCTGTTTTTCAGATTCTGTTTTC
64 TTCTGTTTTT-A-ATTCTGTTTTC
*
15126308 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCATGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGT-CTGAGCTATTTTCAATT
* ***
15126373 TCT-ATTTT--TT-T-TTCAA
65 TCTGTTTTTAATTCTGTTTTC
** * * * ** * *
15126389 AAAAATTCAACTCATATTGCGAGAGGTGAGTTGAG-CTT-TTTAATTTCTGCGAGA-GTT-GATT
1 AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGTCTGAGCTATTTTCAATT
**
15126450 TGAGTCTTTTAATTTCTGTTTTTC
65 TCTGT-TTTTAA-TTCTG-TTTTC
* * * * * *
15126474 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAGTCACATATC-GAGGTATTTTCAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT--GGCTCATGTCTGAGCTATTTTCAAT
* * **
15126538 ATCTGCTTTTCAAGTTAAG-TTTC
64 TTCTG-TTTTTAA-TTCTGTTTTC
*
15126561 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGT-CTGAGCTATTTTCAAT
*
15126626 TTCTGTTTTTAATGTCTGTTTTT
64 TTCTGTTTTTAAT-TCTGTTTTC
* * *
15126649 AGAGAGTCAATTCATATTGCGA
1 A-AAAATCAACTCATATTGCGA
15126671 AAAATGAGTT
Statistics
Matches: 279, Mismatches: 60, Indels: 48
0.72 0.16 0.12
Matches are distributed among these distances:
77 4 0.01
78 2 0.01
79 9 0.03
80 4 0.01
81 10 0.04
82 31 0.11
83 3 0.01
84 28 0.10
85 10 0.04
86 12 0.04
87 24 0.09
88 130 0.47
89 11 0.04
90 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.38
Consensus pattern (85 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGTCTGAGCTATTTTCAATTT
CTGTTTTTAATTCTGTTTTC
Found at i:15126442 original size:30 final size:30
Alignment explanation
Indices: 15126406--15126467 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
15126396 CAACTCATAT
15126406 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
* *
15126436 TGCGAGAGTTGATTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
15126466 TG
1 TG
15126468 TTTTTCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:15127310 original size:17 final size:17
Alignment explanation
Indices: 15127288--15127347 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
15127278 TAAGCCCCCC
15127288 AAAAAAAACCTAACCCA
1 AAAAAAAACCTAACCCA
*** ***
15127305 AAAAAAAAAAGAAGAAA
1 AAAAAAAACCTAACCCA
15127322 AAAGAAAAACCTAACCCA
1 AAA-AAAAACCTAACCCA
15127340 AAAAAAAA
1 AAAAAAAA
15127348 AGAAGAAAAA
Statistics
Matches: 30, Mismatches: 12, Indels: 2
0.68 0.27 0.05
Matches are distributed among these distances:
17 19 0.63
18 11 0.37
ACGTcount: A:0.75, C:0.17, G:0.05, T:0.03
Consensus pattern (17 bp):
AAAAAAAACCTAACCCA
Found at i:15127311 original size:18 final size:18
Alignment explanation
Indices: 15127288--15127348 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
15127278 TAAGCCCCCC
15127288 AAAAAAAACCTAACCCAA
1 AAAAAAAACCTAACCCAA
** **
15127306 AAAAAAAA-AGAA-GAAA
1 AAAAAAAACCTAACCCAA
15127322 AAAGAAAAACCTAACCCAA
1 AAA-AAAAACCTAACCCAA
15127341 AAAAAAAA
1 AAAAAAAA
15127349 GAAGAAAAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
16 5 0.16
17 7 0.22
18 15 0.47
19 5 0.16
ACGTcount: A:0.75, C:0.16, G:0.05, T:0.03
Consensus pattern (18 bp):
AAAAAAAACCTAACCCAA
Found at i:15127335 original size:35 final size:35
Alignment explanation
Indices: 15127291--15127380 Score: 159
Period size: 34 Copynumber: 2.7 Consensus size: 35
15127281 GCCCCCCAAA
15127291 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
15127326 AAAAACCTAACCC-AAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
15127360 AAAAACCTAA--CAAAAAAAAAA
1 AAAAACCTAACCCAAAAAAAAAA
15127381 CTAAAAAAAC
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
32 1 0.02
33 9 0.17
34 31 0.57
35 13 0.24
ACGTcount: A:0.76, C:0.14, G:0.07, T:0.03
Consensus pattern (35 bp):
AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
Found at i:15127378 original size:15 final size:14
Alignment explanation
Indices: 15127339--15127389 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
15127329 AACCTAACCC
*
15127339 AAAAAAAAAAGAA-G
1 AAAAAAAAAA-AACT
*
15127353 AAAAAAGAAAAACCT
1 AAAAAA-AAAAAACT
15127368 AACAAAAAAAAAACT
1 AA-AAAAAAAAAACT
15127383 AAAAAAA
1 AAAAAAA
15127390 CCTAGCCACC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 12 0.39
15 15 0.48
16 4 0.13
ACGTcount: A:0.82, C:0.08, G:0.06, T:0.04
Consensus pattern (14 bp):
AAAAAAAAAAAACT
Found at i:15127436 original size:12 final size:12
Alignment explanation
Indices: 15127419--15127448 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
15127409 TCCCACTTGC
15127419 CCCATTTTTCCT
1 CCCATTTTTCCT
15127431 CCCATTTTTCCT
1 CCCATTTTTCCT
15127443 CCCATT
1 CCCATT
15127449 GTCTACCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.43, G:0.00, T:0.47
Consensus pattern (12 bp):
CCCATTTTTCCT
Found at i:15130487 original size:5 final size:5
Alignment explanation
Indices: 15130477--15130552 Score: 59
Period size: 5 Copynumber: 15.0 Consensus size: 5
15130467 AACATGTAAG
* * *
15130477 AAAAT AAAAT AGAAA- AATAT AAAAT AAAAT AAAAT ATAA- AATAT AAAAT
1 AAAAT AAAAT A-AAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
*
15130526 AATAA- AAAGAA AAAAT ATAAAT AAAAT
1 AA-AAT AAA-AT AAAAT A-AAAT AAAAT
15130553 TAGGTTGCCT
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
4 5 0.09
5 39 0.68
6 13 0.23
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:15130500 original size:7 final size:7
Alignment explanation
Indices: 15130480--15130546 Score: 53
Period size: 7 Copynumber: 8.7 Consensus size: 7
15130470 ATGTAAGAAA
15130480 ATAAAAT
1 ATAAAAT
*
15130487 AGAAAAAT
1 A-TAAAAT
15130495 ATAAAAT
1 ATAAAAT
15130502 AAAATAAAAT
1 ---ATAAAAT
15130512 ATAAAAT
1 ATAAAAT
15130519 ATAAAAT
1 ATAAAAT
*
15130526 AATAAAAAG
1 -AT-AAAAT
*
15130535 AAAAAAT
1 ATAAAAT
15130542 ATAAA
1 ATAAA
15130547 TAAAATTAGG
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
7 28 0.58
8 9 0.19
9 4 0.08
10 7 0.15
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (7 bp):
ATAAAAT
Found at i:15130500 original size:15 final size:15
Alignment explanation
Indices: 15130480--15130546 Score: 66
Period size: 15 Copynumber: 4.3 Consensus size: 15
15130470 ATGTAAGAAA
15130480 ATAAAATAGAAAAAT
1 ATAAAATAGAAAAAT
*
15130495 ATAAAATAAAATAAAAT
1 ATAAAAT-AGA-AAAAT
*
15130512 ATAAAATA-TAAAAT
1 ATAAAATAGAAAAAT
15130526 AATAAAA-AGAAAAAAT
1 -ATAAAATAG-AAAAAT
15130542 ATAAA
1 ATAAA
15130547 TAAAATTAGG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
14 6 0.14
15 18 0.41
16 8 0.18
17 12 0.27
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (15 bp):
ATAAAATAGAAAAAT
Found at i:15134228 original size:28 final size:28
Alignment explanation
Indices: 15134188--15134243 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
15134178 AACAATATTG
* *
15134188 GCCAAATCACTAGTTATTGCAGCGTGAT
1 GCCAAATCACTAGATATTACAGCGTGAT
15134216 GCCAAATCACTAGATATTACAGCGTGAT
1 GCCAAATCACTAGATATTACAGCGTGAT
15134244 CTTTCCCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (28 bp):
GCCAAATCACTAGATATTACAGCGTGAT
Found at i:15138226 original size:3 final size:3
Alignment explanation
Indices: 15138220--15138553 Score: 190
Period size: 3 Copynumber: 111.3 Consensus size: 3
15138210 TTCTTTTTAC
*
15138220 TAT TATT TAT TAT CAT TAT TAT TAT TACCT TCAT TAT TAT TAT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TA--T T-AT TAT TAT TAT TAT TAT
* * * * * *
15138269 T-T TCT T-T TAC CAT TCT TAT TAC TACT T-T TGT TAT TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* * * * *
15138311 CTAA TA- TAT TAT TAT CAC TAT TAT TAT TAT T-T TAC TAT TAT AACT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * * * *
15138356 CAA CA- TAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
15138403 TAT TAT T-T T-T TAC TAT TAT TACT TA- TAT TCGT TAG TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT T-AT TAT TAT TAT TAT
* * * * * *
15138447 TAA TCT TAT CT-T TAT T-T TCTT TAC TAT TAT TTT TAT TAT CAT TAAT
1 TAT TAT TAT -TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT T-AT
*
15138493 TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT
1 TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
15138539 CA- TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
15138554 TTCATATATG
Statistics
Matches: 256, Mismatches: 50, Indels: 50
0.72 0.14 0.14
Matches are distributed among these distances:
2 23 0.09
3 206 0.80
4 24 0.09
5 2 0.01
6 1 0.00
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:15147491 original size:6 final size:6
Alignment explanation
Indices: 15147480--15147529 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
15147470 TAATTTTATC
* * *
15147480 TTATTT TTATTT TTA-TT TTATGT TT-TTA TTAATT TTATTT TTATCTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTAT-TT
15147527 TTA
1 TTA
15147530 ATGTTATTTC
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
5 8 0.23
6 22 0.63
7 5 0.14
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (6 bp):
TTATTT
Found at i:15147495 original size:17 final size:17
Alignment explanation
Indices: 15147473--15147529 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
15147463 TGATACTTAA
*
15147473 TTTTATCTTATTTTTAT
1 TTTTATTTTATTTTTAT
15147490 TTTTATTTTATGTTTT-T
1 TTTTATTTTAT-TTTTAT
* *
15147507 ATTAATTTTATTTTTAT
1 TTTTATTTTATTTTTAT
15147524 CTTTTA
1 -TTTTA
15147530 ATGTTATTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
16 4 0.12
17 21 0.66
18 7 0.22
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.75
Consensus pattern (17 bp):
TTTTATTTTATTTTTAT
Found at i:15147500 original size:22 final size:22
Alignment explanation
Indices: 15147472--15147528 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
15147462 ATGATACTTA
*
15147472 ATTTTATCTTATTT-TTATTTTT
1 ATTTTATCTT-TTTATTAATTTT
*
15147494 ATTTTATGTTTTTATTAATTTT
1 ATTTTATCTTTTTATTAATTTT
15147516 ATTTTTATCTTTT
1 A-TTTTATCTTTT
15147529 AATGTTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.10
22 17 0.57
23 10 0.33
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.75
Consensus pattern (22 bp):
ATTTTATCTTTTTATTAATTTT
Found at i:15151900 original size:19 final size:19
Alignment explanation
Indices: 15151876--15151930 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
15151866 AACGCATCTT
15151876 TTTGCATT-CATTTCATTCA
1 TTTGCATTACATTTCA-TCA
15151895 TTTGCATTACATTTCATCA
1 TTTGCATTACATTTCATCA
* *
15151914 TATGCATTAAATTTCAT
1 TTTGCATTACATTTCAT
15151931 GAAAAGACCC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 26 0.79
20 7 0.21
ACGTcount: A:0.27, C:0.18, G:0.05, T:0.49
Consensus pattern (19 bp):
TTTGCATTACATTTCATCA
Found at i:15161589 original size:45 final size:44
Alignment explanation
Indices: 15161297--15162389 Score: 731
Period size: 44 Copynumber: 24.5 Consensus size: 44
15161287 AGCTACAAAT
* * * * *
15161297 TACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGTAGACTGAAGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* * * ** *
15161341 TACCAATCTTATCTCCCTGAAGTTACAGCGGAATAGATTGAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* * *
15161385 TACTAATCCTATCT-CCTGAAGTTGCAGTGGAGCAGATT-AAAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* * * ** * * **
15161427 CGACGAGT-TCTATAC-CTTTGAAGTTGCAGTAGGTCGGATCAAATCT-ACCA
1 -TACAAATCT-TAT-CTCCCTGAAGTTGC---A-GT-GGAGCAGAT-TGAAGA
** * * *
15161477 CGGCAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGC
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* * * *
15161522 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* * * * *
15161566 TAGCGAGTCTTATCTCCCTGAAGTTGTAGAGGAGCAGACTGAAGA
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* ** * * * *
15161611 CATCTGATCTTATCTCTCTGAAGTTGCAGTAGAGCA-AATCAA-A
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* * *
15161654 -ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT-AAAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* * * * *
15161696 TTACAAGTCTTATCTCTCTGAAGTTGTAGTGGAGTAGACTGAAGA
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* * *
15161741 TAGCGAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGACTGAAGA
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
** * *
15161786 TAACTGATCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTGAA-A
1 T-ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* *
15161830 TTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* * *
15161875 TAGCGAATCTTATCTCCCTGAAGTTGCAGTGGGGCAGATTTAAGCTACAAA
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TT--G--A-AGA
* * * * *
15161926 TCACAAACCTTATCCCCCTGAAGTTGCAGTGGGGCAGGTTGAAGT
1 T-ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* * * * * * *
15161971 TACGAGTCCTATCTTCTTGAAGTTGCAGTGGAG-TGAATCGAAGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATTGAAGA
* * * * *
15162015 TAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGAGTTAAAGC
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGA
* * * * * *
15162061 TATAAACCTTATCACCCTGAAGTTACAGTGGAGCAGGTTGAAGT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
** * * * *
15162105 TATGAGTCCTATCTCCCTGAAGTTGCAGTAGAGC-GAATCGAAGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATTGAAGA
* * * *
15162149 TAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAGTTAAAGC
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGA
* * * * * * * *
15162195 TATAAACCTTATCCCCCTGAAGATACAGTGGAGTAGGTTGAAGT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* * * *
15162239 TACAAACCTTATCTCCCTGAAGTTGCATTGGAGCAGGTTGAAGT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* * * * *
15162283 TACGAATCTCAACTCCCTGAAGTTGCAGTGGAGTAGATCGAAGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* *
15162327 TAGCAAACCTTATTTCCCTGAAGTTGC--TGGAGCAGATTGAA-A
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
* *
15162369 CTACAAGTCTTATCTCTCTGA
1 -TACAAATCTTATCTCCCTGA
15162390 GTGGATCAAA
Statistics
Matches: 812, Mismatches: 196, Indels: 84
0.74 0.18 0.08
Matches are distributed among these distances:
41 30 0.04
42 20 0.02
43 44 0.05
44 320 0.39
45 306 0.38
46 19 0.02
47 2 0.00
48 4 0.00
49 8 0.01
50 23 0.03
51 35 0.04
52 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
Found at i:15161646 original size:134 final size:132
Alignment explanation
Indices: 15161483--15162389 Score: 830
Period size: 134 Copynumber: 6.8 Consensus size: 132
15161473 ACCACGGCAA
* *
15161483 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCCTGAAGTTGC
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAAACCTTATCTCCCTGAAGTTGC
* ** * * * *
15161548 AGTGGAGTAGACTGAAGATAGCGAGTCTTATCTCCCTGAAGTTGTAGAGGAGCAGACTGAAGACA
66 AGTGGAGCAGGTTGAAGATA-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA
*
15161613 TCTG
130 GC-G
* * *
15161617 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATCAAA---ACAAACCTTATCTCCCTGAAGTTGC
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAAACCTTATCTCCCTGAAGTTGC
* * * *
15161679 AGTGGAGCAGGTT-AAAATTACAAGTCTTATCTCTCTGAAGTTGTAGTGGAGTAGACTGAAGATA
66 AGTGGAGCAGGTTGAAGA-TACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA
15161743 GCG
130 GCG
* * ** ** * *
15161746 AATCTTATCTCCCTGAAGTTGCAG-AGGAGCAGACTGAAGATAACTGATCTTATCTCTCTGAAGT
1 -ATCTTATCTCCCTGAAGTTGCAGTA-GAGCAGATTAAAG-CCACAAACCTTATCTCCCTGAAGT
15161810 TGCAGTGGAGCAGGTTGAA-ATTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
63 TGCAGTGGAGCAGGTTGAAGA-TACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
15161874 ATAGCG
127 ATAGCG
* * * *
15161880 AATCTTATCTCCCTGAAGTTGCAGTGGGGCAGATTTAAGCTACAAATCACAAACCTTATCCCCCT
1 -ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAG---C----CACAAACCTTATCTCCCT
* * * * * * * *
15161945 GAAGTTGCAGTGGGGCAGGTTGAAGTTACGAGTCCTATCTTCTTGAAGTTGCAGTGGAG-TGAAT
58 GAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
*
15162009 CGAAGATAGCAA
123 -GAAGATAGC-G
* * * * * *
15162021 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGAGTTAAAGCTATAAACCTTATCACCCTGAAGTTA
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-TTAAAGCCACAAACCTTATCTCCCTGAAGTTG
* ** * * *
15162086 CAGTGGAGCAGGTTGAAGTTATGAGTCCTATCTCCCTGAAGTTGCAGTAGAGC-GAATCGAAGAT
65 CAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGAT
*
15162150 AGCAA
129 AGC-G
* * * * * *
15162155 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAGTTAAAGCTATAAACCTTATCCCCCTGAAGATA
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-TTAAAGCCACAAACCTTATCTCCCTGAAGTTG
* * ** * ** *
15162220 CAGTGGAGTAGGTTGAAGTTACAAACCTTATCTCCCTGAAGTTGCATTGGAGCAGGTTGAAGTTA
65 CAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA
15162285 -CG
130 GCG
* * * * ** ** *
15162287 AATCTCAACTCCCTGAAGTTGCAGTGGAGTAGATCGAAGATAGCAAACCTTATTTCCCTGAAGTT
1 -ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCA-CAAACCTTATCTCCCTGAAGTT
* *
15162352 GC--TGGAGCAGATTGAA-ACTACAAGTCTTATCTCTCTGA
64 GCAGTGGAGCAGGTTGAAGA-TACAAGTCTTATCTCCCTGA
15162390 GTGGATCAAA
Statistics
Matches: 654, Mismatches: 95, Indels: 51
0.82 0.12 0.06
Matches are distributed among these distances:
129 2 0.00
130 73 0.11
131 66 0.10
132 6 0.01
133 47 0.07
134 345 0.53
135 4 0.01
136 1 0.00
138 1 0.00
139 3 0.00
140 101 0.15
141 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (132 bp):
ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAAACCTTATCTCCCTGAAGTTGC
AGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAG
CG
Found at i:15161767 original size:89 final size:89
Alignment explanation
Indices: 15161297--15162389 Score: 600
Period size: 89 Copynumber: 12.2 Consensus size: 89
15161287 AGCTACAAAT
* * * * * * * * *
15161297 TACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGTAGACTGAAGA-TACCAATCTTATCTCCCTGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAGTTAAAATTACAAATCTTATCTCTCTGA
* * ** *
15161361 AGTTACAGCGGAATAGATTGAAGC
66 AGTTGCAGTGGAGCAGATTGAAGA
* * ** * * *
15161385 TACTAATCCTATCT-CCTGAAGTTGCAGTGGAGCAGA-TTAAAACGACGAGT-TCTATAC-CTTT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAGTTAAAATTACAAATCT-TAT-CTCTCT
* * **
15161446 GAAGTTGCAGTAGGTCGGATCAAATCT-ACCA
64 GAAGTTGC---A-GT-GGAGCAGAT-TGAAGA
** * *** * *
15161477 CGGCAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGA-TTAAAGCCACAAACCTTATCTCCCTG
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAGTTAAAATTACAAATCTTATCTCTCTG
* *
15161541 AAGTTGCAGTGGAGTAGACTGAAGA
65 AAGTTGCAGTGGAGCAGATTGAAGA
* * * * * * **
15161566 TAGCGAGTCTTATCTCCCTGAAGTTGTAGAGGAGCAGACTGAAGACA-T-CTGATCTTATCTCTC
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAGTTAA-A-ATTACAAATCTTATCTCTC
* * *
15161629 TGAAGTTGCAGTAGAGCA-AATCAA-A
63 TGAAGTTGCAGTGGAGCAGATTGAAGA
* *
15161654 -ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG-GTTAAAATTACAAGTCTTATCTCTCTGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAGTTAAAATTACAAATCTTATCTCTCTGA
* * *
15161717 AGTTGTAGTGGAGTAGACTGAAGA
66 AGTTGCAGTGGAGCAGATTGAAGA
* * * * * * **
15161741 TAGCGAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGACTGAAGATAACTGATCTTATCTCTCTG
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAGTTAAAATTACAAATCTTATCTCTCTG
*
15161806 AAGTTGCAGTGGAGCAGGTTGAA-A
65 AAGTTGCAGTGGAGCAGATTGAAGA
* * * * * *
15161830 TTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA-TAGCGAATCTTATCTCCCT
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAGTTAAAATTA-CAAATCTTATCTCTCT
* *
15161894 GAAGTTGCAGTGGGGCAGATTTAAGCTACAAA
64 GAAGTTGCAGTGGAGCAGA-TT--G--A-AGA
* * * * * * * *
15161926 TCACAAACCTTATCCCCCTGAAGTTGCAGTGGGGCAG-GTTGAAGTTACGAGTCCTATCT-TCTT
1 T-ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAGTTAAAATTACAAATCTTATCTCTC-T
* *
15161989 GAAGTTGCAGTGGAG-TGAATCGAAGA
64 GAAGTTGCAGTGGAGCAG-ATTGAAGA
* * * ** * * * *
15162015 TAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGAGTTAAAGCTATAAACCTTATCACCCTG
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAGTTAAAATTACAAATCTTATCTCTCTG
* * *
15162080 AAGTTACAGTGGAGCAGGTTGAAGT
65 AAGTTGCAGTGGAGCAGATTGAAGA
** * * * * * *
15162105 TATGAGTCCTATCTCCCTGAAGTTGCAGTAGAGC-GAATCGAAGA-TAGCAAATCTTATCTCTCT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAGT-TAAAATTA-CAAATCTTATCTCTCT
* * *
15162168 GAAGTTGCAGTAGAGCAGAGTTAAAGC
64 GAAGTTGCAGTGGAGCAGA-TTGAAGA
* * * * * * * * * *
15162195 TATAAACCTTATCCCCCTGAAGATACAGTGGAGTAG-GTTGAAGTTACAAACCTTATCTCCCTGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAGTTAAAATTACAAATCTTATCTCTCTGA
* * *
15162259 AGTTGCATTGGAGCAGGTTGAAGT
66 AGTTGCAGTGGAGCAGATTGAAGA
* * * * * * * * *
15162283 TACGAATCTCAACTCCCTGAAGTTGCAGTGGAGTAGA-TCGAAGA-TAGCAAACCTTATTTCCCT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAGT-TAAAATTA-CAAATCTTATCTCTCT
15162346 GAAGTTGC--TGGAGCAGATTGAA-A
64 GAAGTTGCAGTGGAGCAGATTGAAGA
* *
15162369 CTACAAGTCTTATCTCTCTGA
1 -TACAAATCTTATCTCCCTGA
15162390 GTGGATCAAA
Statistics
Matches: 763, Mismatches: 191, Indels: 103
0.72 0.18 0.10
Matches are distributed among these distances:
83 1 0.00
84 2 0.00
85 30 0.04
86 38 0.05
87 65 0.09
88 58 0.08
89 284 0.37
90 146 0.19
91 6 0.01
92 9 0.01
93 12 0.02
94 47 0.06
95 31 0.04
96 34 0.04
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (89 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAGTTAAAATTACAAATCTTATCTCTCTGA
AGTTGCAGTGGAGCAGATTGAAGA
Found at i:15162022 original size:96 final size:96
Alignment explanation
Indices: 15161838--15162023 Score: 216
Period size: 96 Copynumber: 1.9 Consensus size: 96
15161828 AATTACAAGT
* *
15161838 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATCTCCCTGAAGTTGCA
1 CTTATCCCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCCTATCTCCCTGAAGTTGCA
** *
15161903 GTGGGGCAGATTTAAGCTACAAATCACAAAC
66 GTGGGGCAGATCGAAGATACAAATCACAAAC
* ** * * * *
15161934 CTTATCCCCCTGAAGTTGCAGTGGGGCAGGTTGAAGTTA-CGAGTCCTATCTTCTTGAAGTTGCA
1 CTTATCCCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCCTATCTCCCTGAAGTTGCA
15161998 GTGGAGTG-A-ATCGAAGATAGCAAATC
66 GTGG-G-GCAGATCGAAGATA-CAAATC
15162024 TTATCTCTCT
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
95 32 0.43
96 42 0.56
97 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (96 bp):
CTTATCCCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCCTATCTCCCTGAAGTTGCA
GTGGGGCAGATCGAAGATACAAATCACAAAC
Found at i:15163696 original size:3 final size:3
Alignment explanation
Indices: 15163690--15163998 Score: 172
Period size: 3 Copynumber: 102.3 Consensus size: 3
15163680 TTCTTTTTAC
*
15163690 TAT TATT TAT TAT CAT TAT TAT TACCT TCAT TAT TAT TAT TAT TAT T-T
1 TAT TA-T TAT TAT TAT TAT TAT TA--T T-AT TAT TAT TAT TAT TAT TAT
* * * * * * *
15163738 TCT T-T TAC CAT TCT TAT TAC TACT T-T TGT TAT TAT T-T TAT CTAA
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TAT
* * * *
15163782 TA- TAT TAT TAT TAT CAC TAT TAT TAT TAT T-T TAC TAT TAT AACT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * * * *
15163826 CAA CA- TAT TAT TAT TAT TAT TAT TAT TAC CAT TAT TAT TAT T-T TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
15163872 TAC TAT TAT TACT TA- TAT TCGT TAG TAT CAT TAT TAA TCT TAT CT-T
1 TAT TAT TAT TA-T TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT -TAT
* * * *
15163918 TAT T-T TCTT TAC TAT TAT TTT TAT TAT CAT TAAT TAAT TAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT T-AT T-AT TAT TAT TAT
15163965 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
15163999 TTCATATATG
Statistics
Matches: 237, Mismatches: 46, Indels: 46
0.72 0.14 0.14
Matches are distributed among these distances:
2 20 0.08
3 189 0.80
4 25 0.11
5 2 0.01
6 1 0.00
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:15165648 original size:13 final size:13
Alignment explanation
Indices: 15165632--15165682 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
15165622 ACCAAATTTT
15165632 TCAAAAGCACTTC
1 TCAAAAGCACTTC
* *
15165645 TCAAAAACACTTT
1 TCAAAAGCACTTC
* * *
15165658 TCCACAGTACTTC
1 TCAAAAGCACTTC
15165671 TCAAAAGCACTT
1 TCAAAAGCACTT
15165683 TTTAAAAGTA
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.37, C:0.29, G:0.06, T:0.27
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:15165659 original size:26 final size:26
Alignment explanation
Indices: 15165629--15165690 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
15165619 TAAACCAAAT
15165629 TTTTCAAAAGCACTTCTCAAAAACAC
1 TTTTCAAAAGCACTTCTCAAAAACAC
* * * *
15165655 TTTTCCACAGTACTTCTCAAAAGCAC
1 TTTTCAAAAGCACTTCTCAAAAACAC
*
15165681 TTTTTAAAAG
1 TTTTCAAAAG
15165691 TATTGCCAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
TTTTCAAAAGCACTTCTCAAAAACAC
Found at i:15167924 original size:40 final size:40
Alignment explanation
Indices: 15167880--15167956 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
15167870 CTCAATAAAT
* * *
15167880 AACAATTTGACCAAATTTGTAAGGTTAAATATTAAAGTAC
1 AACAATTCGACCAAATTTATAAGGTTAAAGATTAAAGTAC
* *
15167920 AACAATTCGTCTAAATTTATAAGGTTAAAGATTAAAG
1 AACAATTCGACCAAATTTATAAGGTTAAAGATTAAAG
15167957 GTCAAAGAGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.32
Consensus pattern (40 bp):
AACAATTCGACCAAATTTATAAGGTTAAAGATTAAAGTAC
Found at i:15171305 original size:10 final size:11
Alignment explanation
Indices: 15171286--15171318 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
15171276 TTGATATGTT
15171286 AATGAAGAGAA
1 AATGAAGAGAA
15171297 AAT-AAGAGAA
1 AATGAAGAGAA
*
15171307 AGTGAAGAGAA
1 AATGAAGAGAA
15171318 A
1 A
15171319 TAGTGTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (11 bp):
AATGAAGAGAA
Found at i:15173076 original size:46 final size:46
Alignment explanation
Indices: 15173028--15173255 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
15173018 GCTCTCTGAT
** * *
15173028 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
15173074 ATGAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
15173120 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
15173166 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
15173212 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
15173256 TCAAAGATAA
Statistics
Matches: 162, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.01
46 161 0.99
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.19
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:15173187 original size:92 final size:92
Alignment explanation
Indices: 15173038--15173250 Score: 354
Period size: 92 Copynumber: 2.3 Consensus size: 92
15173028 ATGAAATGTG
* *
15173038 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAACGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
* *
15173103 TACCATGGCAACATGACGGGAAATGAA
66 TACCATGGCAACATGACAGAAAATGAA
15173130 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
*
15173195 TACCATGGCAACATGACAGAAAATGAG
66 TACCATGGCAACATGACAGAAAATGAA
* * *
15173222 TAAGACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
15173251 TCATGTCAAA
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
92 113 1.00
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.18
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACAGAAAATGAA
Found at i:15176153 original size:19 final size:20
Alignment explanation
Indices: 15176121--15176164 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
15176111 TTAAAATATT
*
15176121 TAAAATTTTATAAAAACATA
1 TAAAATTCTATAAAAACATA
*
15176141 TAAAATTCT-TAAAAACTTA
1 TAAAATTCTATAAAAACATA
15176160 TAAAA
1 TAAAA
15176165 AAACATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (20 bp):
TAAAATTCTATAAAAACATA
Found at i:15176831 original size:9 final size:9
Alignment explanation
Indices: 15176817--15177051 Score: 82
Period size: 9 Copynumber: 25.7 Consensus size: 9
15176807 ATTAAATGTC
15176817 TTTTTATAA
1 TTTTTATAA
15176826 TTTTTAT-A
1 TTTTTATAA
15176834 TTATTTATAA
1 TT-TTTATAA
*
15176844 GTTCTTATGAA
1 -TTTTTAT-AA
**
15176855 -TTTTATTG
1 TTTTTATAA
*
15176863 TTTTTACAAA
1 TTTTTA-TAA
* *
15176873 ATTTTA-AT
1 TTTTTATAA
*
15176881 TATTTTATTA
1 T-TTTTATAA
15176891 TTTTTATAGA
1 TTTTTATA-A
*
15176901 --TTTATAGG
1 TTTTTATA-A
*
15176909 TTTTTATCAT
1 TTTTTAT-AA
15176919 TTTTTATAA
1 TTTTTATAA
*
15176928 -ATTTATAAA
1 TTTTTAT-AA
15176937 TTTTT-T-A
1 TTTTTATAA
*
15176944 TATTTTATGA
1 T-TTTTATAA
*
15176954 TTTTCATAAAA
1 TTTT--TATAA
* *
15176965 TTTTAAATAT
1 TTTT-TATAA
15176975 TTTTTATTAA
1 TTTTTA-TAA
15176985 -TTTTATAAA
1 TTTTTAT-AA
*
15176994 TTTTTATGA
1 TTTTTATAA
15177003 TTTGTTAT--
1 TTT-TTATAA
15177011 TTTTT-T-A
1 TTTTTATAA
15177018 TTTTTATAA
1 TTTTTATAA
*
15177027 TATTTATAA
1 TTTTTATAA
15177036 GTTTTTATAA
1 -TTTTTATAA
15177046 TTTTTA
1 TTTTTA
15177052 ATTTGTGTCA
Statistics
Matches: 171, Mismatches: 28, Indels: 54
0.68 0.11 0.21
Matches are distributed among these distances:
6 1 0.01
7 9 0.05
8 25 0.15
9 68 0.40
10 56 0.33
11 12 0.07
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:15176940 original size:28 final size:27
Alignment explanation
Indices: 15176819--15177010 Score: 108
Period size: 28 Copynumber: 6.9 Consensus size: 27
15176809 TAAATGTCTT
* *
15176819 TTTAT-AATTTTTATATTATTTATAAGT
1 TTTATAAATTTTTATATTTTTTATAA-A
* *
15176846 TCTTATGAA-TTTTAT-TGTTTTTACAAAA
1 T-TTATAAATTTTTATAT-TTTTTA-TAAA
* *
15176874 TTT-TAATTATTTTAT-TATTTTTATAGA
1 TTTATAAAT-TTTTATAT-TTTTTATAAA
**
15176901 TTTATAGGTTTTTATCATTTTTTATAAA
1 TTTATAAATTTTTAT-ATTTTTTATAAA
* * *
15176929 TTTATAAATTTTT-TATATTTTATGAT
1 TTTATAAATTTTTATATTTTTTATAAA
* *
15176955 TTTCATAAAATTTTAAATATTTTTTATTAAT
1 TTT-AT-AAATTTT-TATATTTTTTA-TAAA
*
15176986 TTTATAAATTTTTATGATTTGTTAT
1 TTTATAAATTTTTAT-ATTTTTTAT
15177011 TTTTTTATTT
Statistics
Matches: 129, Mismatches: 21, Indels: 29
0.72 0.12 0.16
Matches are distributed among these distances:
26 14 0.11
27 18 0.14
28 62 0.48
29 19 0.15
30 10 0.08
31 6 0.05
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (27 bp):
TTTATAAATTTTTATATTTTTTATAAA
Found at i:15177053 original size:26 final size:25
Alignment explanation
Indices: 15176977--15177084 Score: 69
Period size: 26 Copynumber: 4.2 Consensus size: 25
15176967 TTAAATATTT
15176977 TTTATTAA-TTTTATAAATTTTT-ATGA
1 TTTA-TAATTTTTAT-AATTTTTAAT-A
* * * *
15177003 TTTGTTATTTTTTTATTTTTATAATA
1 TTTATAATTTTTATAATTTT-TAATA
15177029 TTTATAAGTTTTTATAATTTTTAAT-
1 TTTATAA-TTTTTATAATTTTTAATA
* * *
15177054 TTGTGTCAATTTTAATAATTTTAAATA
1 TT-TAT-AATTTTTATAATTTTTAATA
15177081 TTTA
1 TTTA
15177085 ATGTTTTTTT
Statistics
Matches: 63, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
25 9 0.14
26 37 0.59
27 17 0.27
ACGTcount: A:0.31, C:0.01, G:0.05, T:0.63
Consensus pattern (25 bp):
TTTATAATTTTTATAATTTTTAATA
Found at i:15177092 original size:17 final size:18
Alignment explanation
Indices: 15177018--15177092 Score: 50
Period size: 17 Copynumber: 4.3 Consensus size: 18
15177008 TATTTTTTTA
*
15177018 TTTTTATAATATTTATAAG
1 TTTTTATAATATTTA-ATG
*
15177037 TTTTTATAATTTTTAAT-
1 TTTTTATAATATTTAATG
* * *
15177054 TTGTGT-CAAT-TTTAATA
1 TT-TTTATAATATTTAATG
*
15177071 ATTTTA-AATATTTAATG
1 TTTTTATAATATTTAATG
15177088 TTTTT
1 TTTTT
15177093 TTTTATATTT
Statistics
Matches: 44, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
16 11 0.25
17 16 0.36
18 3 0.07
19 14 0.32
ACGTcount: A:0.32, C:0.01, G:0.05, T:0.61
Consensus pattern (18 bp):
TTTTTATAATATTTAATG
Found at i:15181324 original size:11 final size:11
Alignment explanation
Indices: 15181304--15181345 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
15181294 TAAAATTTGT
15181304 AAAA-ATATAA
1 AAAATATATAA
15181314 AAAATATATAA
1 AAAATATATAA
* * *
15181325 AAAGTAAAGAA
1 AAAATATATAA
15181336 AAAATATATA
1 AAAATATATA
15181346 TACATAATTT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
10 4 0.16
11 21 0.84
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (11 bp):
AAAATATATAA
Found at i:15181359 original size:33 final size:29
Alignment explanation
Indices: 15181330--15181390 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 29
15181320 TATAAAAAGT
15181330 AAAGAAAAAATATATATACATAATTTAAAAA
1 AAAGAAAAAATATATAT--ATAATTTAAAAA
* **
15181361 AAGGGTAAAATATATATATAATTTAAAAA
1 AAAGAAAAAATATATATATAATTTAAAAA
15181390 A
1 A
15181391 GGGTAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 13 0.48
31 14 0.52
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.28
Consensus pattern (29 bp):
AAAGAAAAAATATATATATAATTTAAAAA
Found at i:15181382 original size:29 final size:29
Alignment explanation
Indices: 15181336--15181397 Score: 99
Period size: 28 Copynumber: 2.1 Consensus size: 29
15181326 AAGTAAAGAA
15181336 AAAATATATATACATAATTTAAAAAAAGGGT
1 AAAATATATATA-ATAATTT-AAAAAAGGGT
15181367 AAAATATATAT-ATAATTTAAAAAAGGGT
1 AAAATATATATAATAATTTAAAAAAGGGT
15181395 AAA
1 AAA
15181398 TTACACCAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
28 13 0.42
29 7 0.23
31 11 0.35
ACGTcount: A:0.60, C:0.02, G:0.10, T:0.29
Consensus pattern (29 bp):
AAAATATATATAATAATTTAAAAAAGGGT
Found at i:15181398 original size:27 final size:29
Alignment explanation
Indices: 15181341--15181397 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
15181331 AAGAAAAAAT
15181341 ATATATACATAATTTAAAAAAAGGGTAAA
1 ATATATACATAATTTAAAAAAAGGGTAAA
*
15181370 ATATATATATAATTT-AAAAAAGGGTAAA
1 ATATATACATAATTTAAAAAAAGGGTAAA
15181398 TTACACCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 13 0.48
29 14 0.52
ACGTcount: A:0.58, C:0.02, G:0.11, T:0.30
Consensus pattern (29 bp):
ATATATACATAATTTAAAAAAAGGGTAAA
Found at i:15182612 original size:38 final size:38
Alignment explanation
Indices: 15182539--15182612 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
15182529 ATAACAAAAA
* *
15182539 ATGTTAATGAGTGACTGATTTGTAAGTTTTTGATAACG
1 ATGTTAATGAGTGACTGATTTGTAACTTTTCGATAACG
* *
15182577 ATGTTAATGGGTGACTGATTTGTCACTTTTCGATAA
1 ATGTTAATGAGTGACTGATTTGTAACTTTTCGATAA
15182613 TGTTAGTGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (38 bp):
ATGTTAATGAGTGACTGATTTGTAACTTTTCGATAACG
Found at i:15182806 original size:30 final size:31
Alignment explanation
Indices: 15182761--15182844 Score: 134
Period size: 30 Copynumber: 2.7 Consensus size: 31
15182751 ATATTAATGG
*
15182761 GTGACTGATTTGTTACTTTTTGATAACGTTA
1 GTGACTGATTTGTTACTTTTTGATAACATTA
15182792 GTGACTGA-TTGTTACTTTTTGATAACATTA
1 GTGACTGATTTGTTACTTTTTGATAACATTA
* *
15182822 GTAACTGATTTGTTATTTTTTGA
1 GTGACTGATTTGTTACTTTTTGA
15182845 AAGTTGAGTG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 28 0.57
31 21 0.43
ACGTcount: A:0.24, C:0.08, G:0.18, T:0.50
Consensus pattern (31 bp):
GTGACTGATTTGTTACTTTTTGATAACATTA
Found at i:15184242 original size:26 final size:26
Alignment explanation
Indices: 15184205--15184340 Score: 229
Period size: 26 Copynumber: 5.2 Consensus size: 26
15184195 TGATACAAAT
*
15184205 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATGGGTTAGGTAAATGTTTC-A
15184231 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
15184257 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15184283 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15184309 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15184335 TGATAA
1 TGATAA
15184341 GAATATCATG
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
26 101 0.97
27 3 0.03
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:15185855 original size:25 final size:25
Alignment explanation
Indices: 15185826--15185874 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
15185816 ATAGTTTTAC
15185826 CCCTAGGAGATAAATT-ACCGAAATA
1 CCCTAGG-GATAAATTGACCGAAATA
* *
15185851 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
15185875 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (25 bp):
CCCTAGGGATAAATTGACCGAAATA
Found at i:15186370 original size:136 final size:137
Alignment explanation
Indices: 15186125--15186407 Score: 523
Period size: 136 Copynumber: 2.1 Consensus size: 137
15186115 TAGTCTCCCC
*
15186125 AAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTCTGGGCCATACTGT
1 AAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
15186190 TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACT
66 TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACT
15186255 GTTACCT
131 GTTACCT
*
15186262 AAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
1 AAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
*
15186326 TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGTCCAGTACCACT
66 TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACT
15186391 GTTACCT
131 GTTACCT
*
15186398 GAATGGGCTT
1 AAATGGGCTT
15186408 AGACCCAATA
Statistics
Matches: 142, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
136 125 0.88
137 17 0.12
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (137 bp):
AAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACT
GTTACCT
Found at i:15190176 original size:26 final size:26
Alignment explanation
Indices: 15190119--15190252 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
15190109 TGATACAAAT
*
15190119 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15190144 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
15190170 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15190195 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15190221 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15190247 TGATAA
1 TGATAA
15190253 GAATTCATGT
Statistics
Matches: 104, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
25 44 0.42
26 60 0.58
ACGTcount: A:0.33, C:0.04, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:15190200 original size:51 final size:51
Alignment explanation
Indices: 15190119--15190252 Score: 234
Period size: 51 Copynumber: 2.6 Consensus size: 51
15190109 TGATACAAAT
15190119 TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
15190170 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTT-CATGATAATGGGTTAGGTAAATGTTTCA
*
15190221 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATG-TTCATGATAA
15190253 GAATTCATGT
Statistics
Matches: 80, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
50 15 0.19
51 42 0.52
52 21 0.26
53 2 0.03
ACGTcount: A:0.33, C:0.04, G:0.25, T:0.37
Consensus pattern (51 bp):
TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:15191775 original size:24 final size:25
Alignment explanation
Indices: 15191739--15191786 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
15191729 ACAGTTTTAC
15191739 CCCTAGAGATAAATT-ACCGAAATA
1 CCCTAGAGATAAATTGACCGAAATA
* * *
15191763 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGAGATAAATTGACCGAAAT
15191787 GCATGTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (25 bp):
CCCTAGAGATAAATTGACCGAAATA
Found at i:15192279 original size:136 final size:136
Alignment explanation
Indices: 15192034--15192318 Score: 527
Period size: 136 Copynumber: 2.1 Consensus size: 136
15192024 GAGTAGTCTC
15192034 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
15192099 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGG-CCAGTACC
15192164 ACTGTTA
130 ACTGTTA
*
15192171 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
15192235 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCAGTACCA
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCAGTACCA
15192300 CTGTTA
131 CTGTTA
**
15192306 CCTGAATGGGCTT
1 CCCAAATGGGCTT
15192319 AGGCCCAATA
Statistics
Matches: 145, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
135 26 0.18
136 99 0.68
137 20 0.14
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCAGTACCA
CTGTTA
Found at i:15193928 original size:15 final size:15
Alignment explanation
Indices: 15193869--15193940 Score: 76
Period size: 15 Copynumber: 4.7 Consensus size: 15
15193859 AAGTAATAGT
15193869 AATAATAATAATA-A
1 AATAATAATAATATA
15193883 TAATAATAATAATA-A
1 -AATAATAATAATATA
15193898 TAATAATAATAATATA
1 -AATAATAATAATATA
* *
15193914 AATAATAGTAGTATA
1 AATAATAATAATATA
15193929 ACGATAATAATA
1 A--ATAATAATA
15193941 CGTAAGGTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
15 42 0.82
16 1 0.02
17 8 0.16
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (15 bp):
AATAATAATAATATA
Found at i:15193940 original size:3 final size:3
Alignment explanation
Indices: 15193862--15193920 Score: 93
Period size: 3 Copynumber: 19.7 Consensus size: 3
15193852 ATGACGAAAG
*
15193862 TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15193910 T-A TAAA TAA TA
1 TAA T-AA TAA TA
15193921 GTAGTATAAC
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
2 2 0.04
3 48 0.92
4 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:15194717 original size:26 final size:26
Alignment explanation
Indices: 15194634--15194717 Score: 88
Period size: 26 Copynumber: 3.3 Consensus size: 26
15194624 AGATATGTAT
15194634 ATATATATATAATAATAATAATAG-T-
1 ATATA-ATATAATAATAATAATAGTTA
15194659 ATAGTAA-A-AATAATAATAATATGTTA
1 ATA-TAATATAATAATAATAATA-GTTA
* *
15194685 AT-GAATATAATAATAATAACAGTTA
1 ATATAATATAATAATAATAATAGTTA
15194710 ATATAATA
1 ATATAATA
15194718 ACAAATACTG
Statistics
Matches: 49, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
23 13 0.27
24 4 0.08
25 12 0.24
26 20 0.41
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (26 bp):
ATATAATATAATAATAATAATAGTTA
Found at i:15195447 original size:21 final size:21
Alignment explanation
Indices: 15195421--15195462 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
15195411 ATAAAAAAGA
15195421 AAGAAATTTTACGATGATAAT
1 AAGAAATTTTACGATGATAAT
15195442 AAGAAATTTTACGATGATAAT
1 AAGAAATTTTACGATGATAAT
15195463 CACCTTTCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.05, G:0.14, T:0.33
Consensus pattern (21 bp):
AAGAAATTTTACGATGATAAT
Found at i:15195831 original size:15 final size:15
Alignment explanation
Indices: 15195811--15195844 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
15195801 TTCTGTTTAG
15195811 GGGTTAGTGGGTTTT
1 GGGTTAGTGGGTTTT
15195826 GGGTTAGTGGGTTTT
1 GGGTTAGTGGGTTTT
15195841 GGGT
1 GGGT
15195845 CCAAAATTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.00, G:0.50, T:0.44
Consensus pattern (15 bp):
GGGTTAGTGGGTTTT
Found at i:15195912 original size:17 final size:19
Alignment explanation
Indices: 15195884--15195923 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
15195874 TAATTTATAT
*
15195884 ATAAATAATTAATAA-TTA
1 ATAAATAATTAACAATTTA
15195902 ATAAA-AATTAACAATTTA
1 ATAAATAATTAACAATTTA
15195920 ATAA
1 ATAA
15195924 TTTATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (19 bp):
ATAAATAATTAACAATTTA
Found at i:15202055 original size:26 final size:26
Alignment explanation
Indices: 15201996--15202130 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
15201986 TGATACAAAT
15201996 TGATAATAGGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
15202021 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
15202047 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
15202073 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
15202099 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
15202125 TGATAA
1 TGATAA
15202131 GAATTTCATG
Statistics
Matches: 107, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
25 23 0.21
26 84 0.79
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:15203791 original size:27 final size:27
Alignment explanation
Indices: 15203745--15203882 Score: 156
Period size: 27 Copynumber: 5.2 Consensus size: 27
15203735 GAGGAAGCGT
15203745 TCTGGTGG--CTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
15203770 TCTGGTGGCTCAGCCACAAATATCTAA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
15203797 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
15203824 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
15203852 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
15203878 TCTGG
1 TCTGG
15203883 CAGCCATGCT
Statistics
Matches: 97, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
25 8 0.08
26 5 0.05
27 69 0.71
28 15 0.15
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:15203820 original size:54 final size:55
Alignment explanation
Indices: 15203745--15203882 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 55
15203735 GAGGAAGCGT
* *
15203745 TCTGGTGG--CTGCCACAAATATCTGATCTGGTGGCTCAGCCACAAATATCT-AA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCAGCCACAAATATCTGAA
* * * *
15203797 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCAGCCACAAATATCTGAA
* *
15203852 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
15203883 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
52 8 0.11
54 49 0.65
55 18 0.24
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCAGCCACAAATATCTGAA
Found at i:15207905 original size:26 final size:25
Alignment explanation
Indices: 15207846--15207979 Score: 223
Period size: 26 Copynumber: 5.2 Consensus size: 25
15207836 TGATACAAAT
15207846 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
15207871 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
15207897 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
15207923 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
*
15207948 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
15207974 TGATAA
1 TGATAA
15207980 GAATTTCATG
Statistics
Matches: 106, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
25 46 0.43
26 60 0.57
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:15207906 original size:51 final size:50
Alignment explanation
Indices: 15207846--15207979 Score: 223
Period size: 51 Copynumber: 2.6 Consensus size: 50
15207836 TGATACAAAT
15207846 TGATAATAGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTT-CA
*
15207897 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTT-CATGATAATAGGTTAGGTAAATGTTCA
*
15207948 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATG-TTCATGATAA
15207980 GAATTTCATG
Statistics
Matches: 79, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
51 53 0.67
52 26 0.33
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (50 bp):
TGATAATAGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTCA
Found at i:15209681 original size:54 final size:55
Alignment explanation
Indices: 15209596--15209735 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 55
15209586 GAGGAAGCGT
* * *
15209596 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCAGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCAGCCACAAATATCTGTA
* * *
15209650 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCAGCCACAAATATCTGTA
* *
15209705 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
15209736 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 59 0.77
55 18 0.23
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCAGCCACAAATATCTGTA
Found at i:15209725 original size:27 final size:28
Alignment explanation
Indices: 15209596--15209735 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 28
15209586 GAGGAAGCGT
* *
15209596 TCTGGTGGCTATGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAATTATCTGTA
* *
15209623 TCTGGTGGCTCAGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAATTATCTGTA
15209650 TCTGGTGGCTCTGCCAC-ATATATCTGT-
1 TCTGGTGGCTCTGCCACAAT-TATCTGTA
*
15209677 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAATTATCTGTA
* *
15209705 TCTGGTGACTCTGTCAC-ATTATCTGT-
1 TCTGGTGGCTCTGCCACAATTATCTGTA
15209731 TCTGG
1 TCTGG
15209736 CAGCCATGCT
Statistics
Matches: 103, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
26 6 0.06
27 80 0.78
28 17 0.17
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAATTATCTGTA
Found at i:15214892 original size:20 final size:20
Alignment explanation
Indices: 15214869--15214932 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 20
15214859 TTATACTCAC
15214869 TTTTTTAATTTGATACTTTT
1 TTTTTTAATTTGATACTTTT
* ***
15214889 TTTTTT--GTT-ATACTCAC
1 TTTTTTAATTTGATACTTTT
15214906 TTTTTTAATTTGATACTTATT
1 TTTTTTAATTTGATACTT-TT
15214927 TTTTTT
1 TTTTTT
15214933 GTTTCAATTT
Statistics
Matches: 32, Mismatches: 8, Indels: 7
0.68 0.17 0.15
Matches are distributed among these distances:
17 11 0.34
18 2 0.06
19 2 0.06
20 11 0.34
21 6 0.19
ACGTcount: A:0.19, C:0.08, G:0.05, T:0.69
Consensus pattern (20 bp):
TTTTTTAATTTGATACTTTT
Found at i:15214902 original size:37 final size:38
Alignment explanation
Indices: 15214859--15214935 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 38
15214849 GATTCTTGAA
15214859 TTATACTCACTTTTTTAATTTGATACTT-TTTTTTTTG
1 TTATACTCACTTTTTTAATTTGATACTTATTTTTTTTG
15214896 TTATACTCACTTTTTTAATTTGATACTTATTTTTTTTG
1 TTATACTCACTTTTTTAATTTGATACTTATTTTTTTTG
15214934 TT
1 TT
15214936 TCAATTTGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
37 28 0.72
38 11 0.28
ACGTcount: A:0.19, C:0.10, G:0.05, T:0.65
Consensus pattern (38 bp):
TTATACTCACTTTTTTAATTTGATACTTATTTTTTTTG
Done.