Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 65 of 444
Found at i:15387420 original size:64 final size:65
Alignment explanation
Indices: 15387303--15387431 Score: 197
Period size: 64 Copynumber: 2.0 Consensus size: 65
15387293 CATACAATAG
* *
15387303 CACATCTAGTTAGGAGCATTTGATTTCATTTCAATCATAGCACCCTAACTATTTGACATAAGCAT
1 CACATCTAGTTAAGAGCATTTGATTTCATTTCAATCATAACACCCTAACTATTTGACATAAGCAT
* * * *
15387368 CACATCTAGTTAAGAGCATTTGA-TTCATTTCGATCATAACATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAAGAGCATTTGATTTCATTTCAATCATAACACCCTAACTATTTGACATAAGCAT
15387432 AGATATATGA
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
64 36 0.62
65 22 0.38
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (65 bp):
CACATCTAGTTAAGAGCATTTGATTTCATTTCAATCATAACACCCTAACTATTTGACATAAGCAT
Found at i:15387564 original size:45 final size:43
Alignment explanation
Indices: 15387500--15387608 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
15387490 GAAGTCAGAT
* * *
15387500 CTTATCTCCTTGAAGTTGCAGCGGAATAGATCGAAGATTACAAAC
1 CTTATCTCCCTGAAGTTGCAGCGGAACAGAT-GAAG-TGACAAAC
* * * * *
15387545 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAGTGACAAGC
1 CTTATCTCCCTGAAGTTGCAGCGGAACAGATGAAGTGACAAAC
*
15387588 CTTATCTCTCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAG
15387609 TGGAGCAGGC
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 26 0.47
44 3 0.05
45 26 0.47
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (43 bp):
CTTATCTCCCTGAAGTTGCAGCGGAACAGATGAAGTGACAAAC
Found at i:15387601 original size:43 final size:45
Alignment explanation
Indices: 15387539--15387652 Score: 146
Period size: 43 Copynumber: 2.6 Consensus size: 45
15387529 ATCGAAGATT
* * * *
15387539 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTAA-GTG
1 ACAAGCCTTATCTCTCTGAAGTTGCAGTGGAGCAGGCTCAATATG
15387582 ACAAGCCTTATCTCTCTGAAGTTGCAGTGGAGCAGGCTCAATATG
1 ACAAGCCTTATCTCTCTGAAGTTGCAGTGGAGCAGGCTCAATATG
*
15387627 -CAAGTCTTATCT-TCCTGAAGTTGCAG
1 ACAAGCCTTATCTCT-CTGAAGTTGCAG
15387653 GAAGCGGACT
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
43 35 0.56
44 26 0.41
45 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAAGCCTTATCTCTCTGAAGTTGCAGTGGAGCAGGCTCAATATG
Found at i:15387809 original size:176 final size:177
Alignment explanation
Indices: 15387585--15387962 Score: 528
Period size: 176 Copynumber: 2.1 Consensus size: 177
15387575 TTAAGTGACA
* * * * *
15387585 AGCCTTATCTCTCTGAAGTTGCAGTGGAGCAGGCTCAATATGCAAGTCTTATCTTCCTGAAGTTG
1 AGCCTTATCTCTCTAAAGTTGCAGTAGAACAGGCTAAATATACAAGTCTTATCTTCCTGAAGTTG
* * * * *
15387650 CAGGAAGCGGACTGAAAATTATAGATCTTATCTCCATGTATCGACTATGGAGCAGATCGAAG-TT
66 CAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGAATATGGAGCAGATCGAAGATG
* *
15387714 GTCGAGTATTATCTCCATGTATCGGCTATGAAGCAGATTTTAGCCACC
131 GT-GAGTATTATCTCCATGTATCAGCTATGAAGAAGATTTTAGCCACC
* * *
15387762 AGCCTTATCTCTCTAAAGTTGTAG-AGAACAGGTTAAATATACAAGTCTTATCTTCTTGAAGTTG
1 AGCCTTATCTCTCTAAAGTTGCAGTAGAACAGGCTAAATATACAAGTCTTATCTTCCTGAAGTTG
15387826 CAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGAATATGGAGCAGATCGAAGATG
66 CAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGAATATGGAGCAGATCGAAGATG
* * *
15387891 GTGAGTCTTATCTTCATGTATCAGCTATGGAGAAGATTTTAGCCACC
131 GTGAGTATTATCTCCATGTATCAGCTATGAAGAAGATTTTAGCCACC
* * *
15387938 AACATTATCT-TCCTGAAGTTGCAGT
1 AGCCTTATCTCT-CTAAAGTTGCAGT
15387963 GGAGCAGGTT
Statistics
Matches: 176, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
175 1 0.01
176 150 0.85
177 25 0.14
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31
Consensus pattern (177 bp):
AGCCTTATCTCTCTAAAGTTGCAGTAGAACAGGCTAAATATACAAGTCTTATCTTCCTGAAGTTG
CAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGAATATGGAGCAGATCGAAGATG
GTGAGTATTATCTCCATGTATCAGCTATGAAGAAGATTTTAGCCACC
Found at i:15387990 original size:44 final size:44
Alignment explanation
Indices: 15387942--15388048 Score: 119
Period size: 44 Copynumber: 2.4 Consensus size: 44
15387932 GCCACCAACA
* * *
15387942 TTATCTTCCTGAAGTTGCAGTGGAGCAGGTTGAA-GTGACAAGCC
1 TTATCTTCCTGAAGTTGCAGTGGAGCAGGCTCAATATG-CAAGCC
* * *
15387986 TTATC-TCTCTAAAGTTGCAGTGGAGTAGGCTCAATATGCAAGTC
1 TTATCTTC-CTGAAGTTGCAGTGGAGCAGGCTCAATATGCAAGCC
*
15388030 TTATCTTCTTGAAGTTGCA
1 TTATCTTCCTGAAGTTGCA
15388049 AGAAGCAGAC
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
43 2 0.04
44 46 0.88
45 4 0.08
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (44 bp):
TTATCTTCCTGAAGTTGCAGTGGAGCAGGCTCAATATGCAAGCC
Found at i:15388046 original size:221 final size:219
Alignment explanation
Indices: 15387762--15388225 Score: 644
Period size: 221 Copynumber: 2.1 Consensus size: 219
15387752 TTTAGCCACC
* *
15387762 AGCCTTATCTCTCTAAAGTTGTAGAGAACAGGTTAAATATACAAGTCTTATCTTCTTGAAGTTGC
1 AGCCTTATCTCTCTAAAGTTGCAGAGAACAGGCTAAATATACAAGTCTTATCTTCTTGAAGTTGC
* **
15387827 AGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGAATATGGAGCAGATCGAAGATGG
66 AAGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGAATATAAAGCAGATCGAAGATGG
** * *
15387892 TGAGTCTTATCTTCATGTATCAGCTATGGAGAAGATTTTAGCCACCAACATTATCT-TCCTGAAG
131 CAAGTCTTATCTCCATGTATCAGCTATAGAGAAGATTTTAGCCACCAACATTATCTCT-CTGAAG
* *
15387956 TTGCAGTGGAGCAGGTTGAAG-TGACA
195 TTGCAG-AGAGCAGGTTAAAGAT-ACA
* ** * *
15387982 AGCCTTATCTCTCTAAAGTTGCAGTGGAGTAGGCTCAATATGCAAGTCTTATCTTCTTGAAGTTG
1 AGCCTTATCTCTCTAAAGTTGCAG-AGAACAGGCTAAATATACAAGTCTTATCTTCTTGAAGTTG
* *
15388047 CAAGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGACTATAAAGCAGATCGAAGATG
65 CAAGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGAATATAAAGCAGATCGAAGATG
* * * * *
15388112 GCAAGTCTTGTCTCCATGTATCGGCTATAGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAG
130 GCAAGTCTTATCTCCATGTATCAGCTATAGAGAAGATTTTAGCCACCAACATTATCTCTCTGAAG
15388177 TTGCAGAGAGCAGGTTAAAGATACA
195 TTGCAGAGAGCAGGTTAAAGATACA
* * *
15388202 AGTCTTATCTTTCTGAAGTTGCAG
1 AGCCTTATCTCTCTAAAGTTGCAG
15388226 GAAGTAGATT
Statistics
Matches: 215, Mismatches: 26, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
220 59 0.27
221 155 0.72
222 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (219 bp):
AGCCTTATCTCTCTAAAGTTGCAGAGAACAGGCTAAATATACAAGTCTTATCTTCTTGAAGTTGC
AAGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGAATATAAAGCAGATCGAAGATGG
CAAGTCTTATCTCCATGTATCAGCTATAGAGAAGATTTTAGCCACCAACATTATCTCTCTGAAGT
TGCAGAGAGCAGGTTAAAGATACA
Found at i:15388189 original size:43 final size:43
Alignment explanation
Indices: 15388140--15388225 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
15388130 TATCGGCTAT
** * *
15388140 AGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCAG
1 AGAGCAGATTAAAGACACAAGCCTTATCTCTCTGAAGTTGCAG
* * * *
15388183 AGAGCAGGTTAAAGATACAAGTCTTATCTTTCTGAAGTTGCAG
1 AGAGCAGATTAAAGACACAAGCCTTATCTCTCTGAAGTTGCAG
15388226 GAAGTAGATT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (43 bp):
AGAGCAGATTAAAGACACAAGCCTTATCTCTCTGAAGTTGCAG
Found at i:15388243 original size:397 final size:396
Alignment explanation
Indices: 15387546--15388279 Score: 1211
Period size: 397 Copynumber: 1.9 Consensus size: 396
15387536 ATTACAAACC
*
15387546 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAGTGACAAGCCTTATCTCTCTGAAGTTGCAGTG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAGTGACAAGCCTTATCTCTCTAAAGTTGCAGTG
* * *
15387611 GAGCAGGCTCAATATGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCGGACTGAAAATTATAGAT
66 GAGCAGGCTCAATATGCAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTACAGAT
** * * *
15387676 CTTATCTCCATGTATCGACTATGGAGCAGATCGAAGTTGTCGAGTATTATCTCCATGTATCGGCT
131 CTTATCTCCATGTATCGACTATAAAGCAGATCGAAGATGGCAAGTATTATCTCCATGTATCGGCT
* *
15387741 ATGAAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAAGTTGTAGAGAACAGGTTAAATATACAA
196 ATGAAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAAGTTGCAGAGAACAGGTTAAAGATACAA
15387806 GTCTTATCTTCTTGAAGTTGCAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGAA
261 GTCTTATCTTCTTGAAGTTGCAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGAA
15387871 TATGGAGCAGATCGAAGATGGTGAGTCTTATCTTCATGTATCAGCTATGGAGAAGATTTTAGCCA
326 TATGGAGCAGATCGAAGATGGTGAGTCTTATCTTCATGTATCAGCTATGGAGAAGATTTTAGCCA
15387936 CCAACA
391 CCAACA
*
15387942 TTATCTTCCTGAAGTTGCAGTGGAGCAGGTTGAAGTGACAAGCCTTATCTCTCTAAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTT-AAGTGACAAGCCTTATCTCTCTAAAGTTGCAGT
* *
15388007 GGAGTAGGCTCAATATGCAAGTCTTATCTTCTTGAAGTTGCAAGAAGCAGACTGAAAATTACAGA
65 GGAGCAGGCTCAATATGCAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTACAGA
* *
15388072 TCTTATCTCCATGTATCGACTATAAAGCAGATCGAAGATGGCAAGTCTTGTCTCCATGTATCGGC
130 TCTTATCTCCATGTATCGACTATAAAGCAGATCGAAGATGGCAAGTATTATCTCCATGTATCGGC
* *
15388137 TAT-AGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCAGAGAGCAGGTTAAAGATAC
195 TATGA-AGCAGATTTTAGCCACCAGCCTTATCTCTCTAAAGTTGCAGAGAACAGGTTAAAGATAC
* * * *
15388201 AAGTCTTATCTT-TCTGAAGTTGCAGGAAGTAGATTGAAAATTACAGATCTTATCTCCATGTATT
259 AAGTCTTATCTTCT-TGAAGTTGCAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATC
**
15388265 GGCTATGGAGCAGAT
323 GAATATGGAGCAGAT
15388280 TTTAGCCACC
Statistics
Matches: 311, Mismatches: 24, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
396 32 0.10
397 279 0.90
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (396 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAGTGACAAGCCTTATCTCTCTAAAGTTGCAGTG
GAGCAGGCTCAATATGCAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTACAGAT
CTTATCTCCATGTATCGACTATAAAGCAGATCGAAGATGGCAAGTATTATCTCCATGTATCGGCT
ATGAAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAAGTTGCAGAGAACAGGTTAAAGATACAA
GTCTTATCTTCTTGAAGTTGCAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGAA
TATGGAGCAGATCGAAGATGGTGAGTCTTATCTTCATGTATCAGCTATGGAGAAGATTTTAGCCA
CCAACA
Found at i:15388276 original size:131 final size:131
Alignment explanation
Indices: 15388117--15388486 Score: 508
Period size: 131 Copynumber: 2.8 Consensus size: 131
15388107 AGATGGCAAG
* *
15388117 TCTTGTCTCCATGTATCGGCTATAGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCA
* * * * *
15388182 GAGAGCAGGTTAAAGATACAAGTCTTATCTTTCTGAAGTTGCAGGAAGTAGATTGAAAATTACAG
66 GAGAGCAGGTTAAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAAACTGAAAATTACAA
15388247 A
131 A
* * *
15388248 TCTTATCTCCATGTATTGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTTACA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCA
* * *
15388313 AAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTTAAGTTGCAGGAAGCAAACTGAAAATTACAA
66 GAGAGCAGGTTAAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAAACTGAAAATTACAA
15388378 A
131 A
* * * * * * *
15388379 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTCAGCCACCGGCTTTGTCTCCCTAAAGTTGTA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCA
* **
15388444 GTGGAGCAGGTTAAAG-TCACAAACCTTATCTTCCTGAAGTTGC
66 G-AGAGCAGGTTAAAGAT-ACAAGTCTTATCTTCCTGAAGTTGC
15388487 TGTAAGACTA
Statistics
Matches: 208, Mismatches: 29, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
131 174 0.84
132 34 0.16
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (131 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCA
GAGAGCAGGTTAAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAAACTGAAAATTACAA
A
Found at i:15389891 original size:9 final size:9
Alignment explanation
Indices: 15389877--15389919 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
15389867 CCTTTATGTG
*
15389877 TATATTATT
1 TATATTATA
*
15389886 TATATTATC
1 TATATTATA
15389895 TATATGTATA
1 TATAT-TATA
*
15389905 TATAATATA
1 TATATTATA
15389914 TATATT
1 TATATT
15389920 GTTTGGTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
9 22 0.76
10 7 0.24
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (9 bp):
TATATTATA
Found at i:15389938 original size:21 final size:20
Alignment explanation
Indices: 15389886--15389944 Score: 57
Period size: 21 Copynumber: 3.0 Consensus size: 20
15389876 GTATATTATT
*
15389886 TATATTATCTATA-TGTATA
1 TATATTATCTATATTGTTTA
* * *
15389905 TATAATATATATATTGTTTGG
1 TATATTATCTATATTGTTT-A
*
15389926 TATATTATCTATATCGTTT
1 TATATTATCTATATTGTTT
15389945 CGTTACTTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
19 11 0.35
20 4 0.13
21 16 0.52
ACGTcount: A:0.32, C:0.05, G:0.08, T:0.54
Consensus pattern (20 bp):
TATATTATCTATATTGTTTA
Found at i:15390302 original size:27 final size:27
Alignment explanation
Indices: 15390192--15390306 Score: 78
Period size: 27 Copynumber: 4.3 Consensus size: 27
15390182 GTATTTTATT
*
15390192 TATATAGTTTCTTTAAAATCT-TT-A-A
1 TATATATTTTCTTTAAAAT-TATTCATA
* * * *
15390217 TGTATATTTTCTTTTCAAA-TATGTTATG
1 TATATATTTTC-TTTAAAATTAT-TCATA
* * * * *
15390245 TAAATATTTTCTTCAAATTTATTCTTC
1 TATATATTTTCTTTAAAATTATTCATA
15390272 TATATATTTTCTTTAAAATTATTCATA
1 TATATATTTTCTTTAAAATTATTCATA
15390299 TATA-ATTT
1 TATATATTT
15390307 GGCTTTCTTT
Statistics
Matches: 67, Mismatches: 17, Indels: 11
0.71 0.18 0.12
Matches are distributed among these distances:
24 1 0.01
25 10 0.15
26 11 0.16
27 33 0.49
28 12 0.18
ACGTcount: A:0.32, C:0.09, G:0.03, T:0.56
Consensus pattern (27 bp):
TATATATTTTCTTTAAAATTATTCATA
Found at i:15390389 original size:13 final size:13
Alignment explanation
Indices: 15390371--15390408 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
15390361 TTTATATATA
15390371 TATTATTTTCATT
1 TATTATTTTCATT
*
15390384 TATTATTTTTATT
1 TATTATTTTCATT
15390397 TATTATTTTCAT
1 TATTATTTTCAT
15390409 ATAAATATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (13 bp):
TATTATTTTCATT
Found at i:15393322 original size:64 final size:64
Alignment explanation
Indices: 15393249--15393459 Score: 158
Period size: 64 Copynumber: 3.2 Consensus size: 64
15393239 CTGGGCCAGA
*
15393249 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * * *** * ** *
15393313 GCCCATTTCAAAATACATGTAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGTA
1 GCCCATTTCAGATTACA-ATAA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GTA
* *
15393376 CTGGGCCAGA-
55 -TGGCCCATAG
*
15393386 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
15393450 GCCCATTTCA
1 GCCCATTTCA
15393460 AAATACATGC
Statistics
Matches: 103, Mismatches: 29, Indels: 30
0.64 0.18 0.19
Matches are distributed among these distances:
63 7 0.07
64 26 0.25
65 6 0.06
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 6 0.06
73 17 0.17
74 7 0.07
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:15393461 original size:137 final size:136
Alignment explanation
Indices: 15393215--15393500 Score: 527
Period size: 137 Copynumber: 2.1 Consensus size: 136
15393205 TATTGGGCCT
**
15393215 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
15393280 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGTAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
15393345 CATATGC
130 CATATGC
15393352 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
15393417 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
15393482 ATATGC
131 ATATGC
15393488 AAGCCCATTTGGG
1 AAGCCCATTTGGG
15393501 GAGACTACTC
Statistics
Matches: 145, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
136 22 0.15
137 123 0.85
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:15393785 original size:25 final size:27
Alignment explanation
Indices: 15393748--15393800 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
15393738 TCAAGCATGC
15393748 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
15393774 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
15393800 A
1 A
15393801 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:15395318 original size:26 final size:26
Alignment explanation
Indices: 15395282--15395417 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
15395272 CATGATATTC
15395282 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
15395308 TTATCATGAAACATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
*
15395334 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
15395360 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
15395386 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
15395412 TTATCA
1 TTATCA
15395418 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:15403151 original size:24 final size:24
Alignment explanation
Indices: 15403124--15403170 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
15403114 AAAATGACAA
15403124 TGATAACGA-AAACAATAATAATAG
1 TGATAAC-ATAAACAATAATAATAG
*
15403148 TGATAACATAAATAATAATAATA
1 TGATAACATAAACAATAATAATA
15403171 TAAAATGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.60, C:0.06, G:0.09, T:0.26
Consensus pattern (24 bp):
TGATAACATAAACAATAATAATAG
Found at i:15403237 original size:25 final size:24
Alignment explanation
Indices: 15403208--15403261 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
15403198 ATGCATTGAG
*
15403208 ATATATACGTAATAATAGAAATAAA
1 ATATATACGTAATAATA-AAAGAAA
* * *
15403233 ATATATATGTAGTATTAAAAGAAA
1 ATATATACGTAATAATAAAAGAAA
15403257 ATATA
1 ATATA
15403262 CATAATACGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.31
Consensus pattern (24 bp):
ATATATACGTAATAATAAAAGAAA
Found at i:15404106 original size:36 final size:36
Alignment explanation
Indices: 15404059--15404151 Score: 168
Period size: 36 Copynumber: 2.6 Consensus size: 36
15404049 GGGTCATGCT
*
15404059 CAAAACGACGTCGTTTTGGGGTTAAAAGGTAGCCCC
1 CAAAACGACGTCGTTTTGGGGTTAAAAGGCAGCCCC
*
15404095 CAAAACGACGTCGTTTTGAGGTTAAAAGGCAGCCCC
1 CAAAACGACGTCGTTTTGGGGTTAAAAGGCAGCCCC
15404131 CAAAACGACGTCGTTTTGGGG
1 CAAAACGACGTCGTTTTGGGG
15404152 GGCTATAAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.22
Consensus pattern (36 bp):
CAAAACGACGTCGTTTTGGGGTTAAAAGGCAGCCCC
Found at i:15405178 original size:42 final size:42
Alignment explanation
Indices: 15405119--15405199 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
15405109 GTGACTTCAA
* * *
15405119 TCAATTTCACTGAAACTTGAAGGAGACCTGCTGTAGCTTCGC
1 TCAATTCCACTAAAACTTCAAGGAGACCTGCTGTAGCTTCGC
* *
15405161 TCAATTCCACTAAAACTTCAAGGAGATCTGCTGTGGCTT
1 TCAATTCCACTAAAACTTCAAGGAGACCTGCTGTAGCTT
15405200 TTAGCCGCTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (42 bp):
TCAATTCCACTAAAACTTCAAGGAGACCTGCTGTAGCTTCGC
Found at i:15405547 original size:85 final size:85
Alignment explanation
Indices: 15405325--15405579 Score: 339
Period size: 85 Copynumber: 2.9 Consensus size: 85
15405315 AGAATTCGAT
* * * * * * * *
15405325 GTCTTTGATCTGTTCCACTACAACTTCAGGGAGGTGAGATCTGCGATTTTCAGCTTATTACCCTA
1 GTCTTCGATCTGCTCCACTAC-ACTT-AGGGAGATAAGATCTGC-A-ATTCAACCTGTTACCCTA
* *
15405390 TTGCTTAGGGGGTTAAGGTTCTTC
62 CTGCTTAGGGGTTTAAGGTTCTTC
* * *
15405414 GTCTTCGATCTGCTCCGCTACCGCTTAGGGAGATAAGATCTGTAATTCAACCTGTTACCCTACTG
1 GTCTTCGATCTGCTCCACTA-CACTTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTG
15405479 CTTAGGGGTTTAAGGTTCTTC
65 CTTAGGGGTTTAAGGTTCTTC
15405500 GTCTTCGATCTGCTCCACTACACTTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGC
1 GTCTTCGATCTGCTCCACTACACTTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGC
*
15405565 TTAGGGTTTTAAGGT
66 TTAGGGGTTTAAGGT
15405580 CTGCAATTCG
Statistics
Matches: 148, Mismatches: 17, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
85 57 0.39
86 55 0.37
87 1 0.01
88 14 0.09
89 20 0.14
90 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.35
Consensus pattern (85 bp):
GTCTTCGATCTGCTCCACTACACTTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGC
TTAGGGGTTTAAGGTTCTTC
Found at i:15405766 original size:132 final size:131
Alignment explanation
Indices: 15405544--15406029 Score: 559
Period size: 132 Copynumber: 3.7 Consensus size: 131
15405534 AGATCTGCAA
* * * *
15405544 TTCAACCTGTTACCCTACTGCTTAGGGTTTTAAGGTCTGCAATTCGGTCTGTTACCCTACTGCTT
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCTGAAATTCGCTCTGTTACCCTACTGCTT
* * * *
15405609 AGGGATTTAAGACCCTTCGGC-TTTGATCTGCTCCACTGCAACTTCAGGAAGGCAAGACCCGTGA
66 AGGGATTAAAGACCCATC-ACTTTTGATCTGCTCCACTGCAACTTCAGGAAGGCAAGACCTGTGA
15405673 TT
130 TT
15405675 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGG-CTTGTAAATTCAGCT-TGTTACCCTACTG
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTC-TG-AAATTC-GCTCTGTTACCCTACTG
* * * ** * * *
15405738 CTTAGGGGGTTAAAG-CCCATCACTTTTGATCTGTTTCC-CTACTGCTT-AGG-GGGTTAAGATC
63 CTTA-GGGATTAAAGACCCATCACTTTTGATCTG-CTCCACTGCAACTTCAGGAAGG-CAAGACC
*
15405799 TGT-A-A
125 TGTGATT
* * *
15405804 TTCAACCTGTTACCCTACTGCTTA-GGGTTTAAGGTCTGCAATTCGGTCTGTTACCCTACTGCTT
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCTGAAATTCGCTCTGTTACCCTACTGCTT
* *
15405868 AGGGATTTAAGACCCTTCA-TCTTTGATCTGCTCCACTGCAACTTCAGGAAGGCAAGACCTGTGA
66 AGGGATTAAAGACCCATCACT-TTTGATCTGCTCCACTGCAACTTCAGGAAGGCAAGACCTGTGA
15405932 TT
130 TT
15405934 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGG-CTTGTAAATTCAGCT-TGTTACCCTACTG
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTC-TG-AAATTC-GCTCTGTTACCCTACTG
*
15405997 CTTAGGGGGTTAAAG-CCCATCACTTTTGATCTG
63 CTTA-GGGATTAAAGACCCATCACTTTTGATCTG
15406030 TTTCCCTACT
Statistics
Matches: 296, Mismatches: 37, Indels: 43
0.79 0.10 0.11
Matches are distributed among these distances:
126 14 0.05
127 43 0.15
128 23 0.08
129 27 0.09
130 28 0.09
131 58 0.20
132 79 0.27
133 24 0.08
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (131 bp):
TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCTGAAATTCGCTCTGTTACCCTACTGCTT
AGGGATTAAAGACCCATCACTTTTGATCTGCTCCACTGCAACTTCAGGAAGGCAAGACCTGTGAT
T
Found at i:15405847 original size:41 final size:43
Alignment explanation
Indices: 15405675--15405878 Score: 166
Period size: 41 Copynumber: 4.8 Consensus size: 43
15405665 ACCCGTGATT
* * *
15405675 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGG-CTTGTAAA
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCATG-CAA
* * * ** *
15405718 TTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CACT
1 TTCAACCTGTTACCCTACTGCTTA-GGGGTTTAAGGTCATGCA-A
** * * * * *
15405762 TTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATC-TGTAA
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCATGCAA
15405804 TTCAACCTGTTACCCTACTGCTTA-GGGTTTAAGGTC-TGCAA
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCATGCAA
*** *
15405845 TTCGGTCTGTTACCCTACTGCTTAGGGATTTAAG
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAG
15405879 ACCCTTCATC
Statistics
Matches: 125, Mismatches: 31, Indels: 11
0.75 0.19 0.07
Matches are distributed among these distances:
41 35 0.28
42 29 0.23
43 32 0.26
44 27 0.22
45 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (43 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCATGCAA
Found at i:15405925 original size:259 final size:259
Alignment explanation
Indices: 15405522--15406130 Score: 1060
Period size: 259 Copynumber: 2.3 Consensus size: 259
15405512 CTCCACTACA
* * *
15405522 CTTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGTTTTAAGGTCTGCAAT
1 CTTAGGGGGTTAAGATCTGTAATTCAACCTGTTACCCTACTGCTTAGGG-TTTAAGGTCTGCAAT
*
15405587 TCGGTCTGTTACCCTACTGCTTAGGGATTTAAGACCCTTCGGCTTTGATCTGCTCCACTGCAACT
65 TCGGTCTGTTACCCTACTGCTTAGGGATTTAAGACCCTTCAGCTTTGATCTGCTCCACTGCAACT
15405652 TCAGGAAGGCAAGACCCGTGATTTTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCTTGTAA
130 TCAGGAAGGCAAGACCCGTGATTTTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCTTGTAA
15405717 ATTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACTTTTGATCTGTTTCCCTACTG
195 ATTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACTTTTGATCTGTTTCCCTACTG
15405782 CTTAGGGGGTTAAGATCTGTAATTCAACCTGTTACCCTACTGCTTAGGGTTTAAGGTCTGCAATT
1 CTTAGGGGGTTAAGATCTGTAATTCAACCTGTTACCCTACTGCTTAGGGTTTAAGGTCTGCAATT
*
15405847 CGGTCTGTTACCCTACTGCTTAGGGATTTAAGACCCTTCATCTTTGATCTGCTCCACTGCAACTT
66 CGGTCTGTTACCCTACTGCTTAGGGATTTAAGACCCTTCAGCTTTGATCTGCTCCACTGCAACTT
*
15405912 CAGGAAGGCAAGACCTGTGATTTTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAA
131 CAGGAAGGCAAGACCCGTGATTTTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAA
15405977 TTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACTTTTGATCTGTTTCCCTACTG
196 TTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACTTTTGATCTGTTTCCCTACTG
* ** * *
15406041 CTTAGGGGGTTAAGATCTGTAAACTCGGCCTATTACCCTACTGCTTAGGGGTTAAGGTC--CATA
1 CTTAGGGGGTTAAGATCTGT-AATTCAACCTGTTACCCTACTGCTTAGGGTTTAAGGTCTGCA-A
* *
15406104 TTCGATCTGTTTCCCTACTGCTTAGGG
64 TTCGGTCTGTTACCCTACTGCTTAGGG
15406131 TGATAAGATC
Statistics
Matches: 334, Mismatches: 13, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
258 2 0.01
259 253 0.76
260 79 0.24
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.34
Consensus pattern (259 bp):
CTTAGGGGGTTAAGATCTGTAATTCAACCTGTTACCCTACTGCTTAGGGTTTAAGGTCTGCAATT
CGGTCTGTTACCCTACTGCTTAGGGATTTAAGACCCTTCAGCTTTGATCTGCTCCACTGCAACTT
CAGGAAGGCAAGACCCGTGATTTTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAA
TTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACTTTTGATCTGTTTCCCTACTG
Found at i:15406197 original size:128 final size:130
Alignment explanation
Indices: 15406027--15406273 Score: 356
Period size: 128 Copynumber: 1.9 Consensus size: 130
15406017 CACTTTTGAT
*
15406027 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAACTCGGCCTATTACCCTACTGCTTA-GGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAACTCGGCCTATTACCCTACTGCTTAGGGG
* * *
15406091 GTTAAGGTC-CATATTCGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATCTTCAGC
66 GTTAAGATCTCATATTCAATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGTAAATCTTCAGC
* * * * * *
15406155 CTGTTACCCTACTGCTTAGGGGGTTTAG-GCTTGTGAATTCGGCTTGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGTAAACTCGGCCTATTACCCTACTGCTTAGGG
*
15406219 GGTTAAGATCTTCATCTTCAATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTG
65 GGTTAAGATC-TCATATTCAATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTG
15406274 CAATTCGGTC
Statistics
Matches: 104, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
127 1 0.01
128 52 0.50
129 11 0.11
131 40 0.38
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (130 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAACTCGGCCTATTACCCTACTGCTTAGGGG
GTTAAGATCTCATATTCAATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGTAAATCTTCAGC
Found at i:15406251 original size:43 final size:43
Alignment explanation
Indices: 15405382--15406399 Score: 350
Period size: 43 Copynumber: 23.6 Consensus size: 43
15405372 TTTCAGCTTA
* * *
15405382 TTACCCTATTGCTTAGGGGGTTAAGGTTCTTCGTCTTCGATCTG
1 TTACCCTACTGCTTAGGGGGTTAA-GATCTTCATCTTCGATCTG
* * * * * * *
15405426 CT-CCGCTACCGCTTAGGGAGATAAGATCTGT-A-ATTCAACCTG
1 TTACC-CTACTGCTTAGGGGGTTAAGATCT-TCATCTTCGATCTG
* * *
15405468 TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTG
1 TTACCCTACTGCTTAGGGGGTTAA-GATCTTCATCTTCGATCTG
* * * * * * * *
15405512 CT-CCACTAC-ACTTAGGGAGATAAGATCTGCA-ATTCAACCTG
1 TTACC-CTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTG
** * * * *
15405553 TTACCCTACTGCTTAGGGTTTTAAGGTCTGCA-ATTCGGTCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTG
** * ** *
15405595 TTACCCTACTGCTTAGGGATTTAAGACCCTTCGGCTTTGATCTG
1 TTACCCTACTGCTTAGGGGGTTAAGA-TCTTCATCTTCGATCTG
* * ** * * * * * * * * *
15405639 CT-CCACTGCAACTTCAGGAAGG-CAAGACCCGTGATTTTCAACCTA
1 TTACC-CTACTGCTT-AGG-GGGTTAAGA-TCTTCATCTTCGATCTG
* * * ** *
15405684 TTACCCTACTGCTTAGGGGTTTAAG-GCTTGTAAATTC-AGCTTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTT-CATCTTCGATC-TG
** * *
15405727 TTACCCTACTGCTTAGGGGGTTAAAGCCCATCA-CTTTTGATCTG
1 TTACCCTACTGCTTAGGGGGTT-AAGATCTTCATC-TTCGATCTG
* * * *
15405771 TTTCCCTACTGCTTAGGGGGTTAAGATCTGT-A-ATTCAACCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCT-TCATCTTCGATCTG
* * * * *
15405813 TTACCCTACTGCTTA-GGGTTTAAGGTCTGCA-ATTCGGTCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTG
** * *
15405854 TTACCCTACTGCTTAGGGATTTAAGACCCTTCATCTTTGATCTG
1 TTACCCTACTGCTTAGGGGGTTAAGA-TCTTCATCTTCGATCTG
* * ** * * * * * * * *
15405898 CT-CCACTGCAACTTCAGGAAGG-CAAGACCTGTGATTTTCAACCTA
1 TTACC-CTACTGCTT-AGG-GGGTTAAGATCT-TCATCTTCGATCTG
* * * ** *
15405943 TTACCCTACTGCTTAGGGGTTTAAG-GCTTGTAAATTC-AGCTTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTT-CATCTTCGATC-TG
** * *
15405986 TTACCCTACTGCTTAGGGGGTTAAAGCCCATCA-CTTTTGATCTG
1 TTACCCTACTGCTTAGGGGGTT-AAGATCTTCATC-TTCGATCTG
* * * ** *
15406030 TTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAAC-TCGGCCTA
1 TTACCCTACTGCTTAGGGGGTTAAGATCT-TCATCTTCGATCTG
* *
15406073 TTACCCTACTGCTTA-GGGGTTAAGGTC--CATATTCGATCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTG
* * * * *
15406113 TTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATCTTC-AGCCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-TCTG
* * * * *
15406158 TTACCCTACTGCTTAGGGGGTTTAG-GCTT-GTGAATTCG-GCTTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTTCAT--CTTCGATC-TG
*
15406201 TTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCAATCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTG
* * * * * *
15406244 TTTCCCTACTGCTTAGGGAGATAAGATCTGCA-ATTCGGTCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTG
* * * * * * * * *
15406286 TTACTCTACCGATTAGAGGTTTAAGACCCTTCGTCTTTGATCTA
1 TTACCCTACTGCTTAGGGGGTTAAGA-TCTTCATCTTCGATCTG
* * * *
15406330 TTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAACCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGATCTG
*
15406375 TTACCCTACTGCTTAGGGGTTTAAG
1 TTACCCTACTGCTTAGGGGGTTAAG
15406400 GCTTGTGAAT
Statistics
Matches: 698, Mismatches: 217, Indels: 117
0.68 0.21 0.11
Matches are distributed among these distances:
39 1 0.00
40 19 0.03
41 56 0.08
42 151 0.22
43 186 0.27
44 167 0.24
45 114 0.16
46 4 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (43 bp):
TTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTG
Found at i:15406567 original size:61 final size:64
Alignment explanation
Indices: 15406456--15406580 Score: 186
Period size: 61 Copynumber: 2.0 Consensus size: 64
15406446 CCATGTATCT
*
15406456 ATGCTTATGTCAAATGATTAGGATGCTGTGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTGTGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
15406520 ATGCTTTATGTCAACTAATTAGGATG-T-T-AT-GAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGC-TTATGTCAAATAATTAGGATGCTGTGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
15406581 TTACTGTATA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
61 30 0.53
62 2 0.04
63 1 0.02
64 5 0.09
65 19 0.33
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTGTGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:15408234 original size:14 final size:14
Alignment explanation
Indices: 15408215--15408261 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
15408205 TGATCCCCCA
15408215 TTTTTTCTTTTTCT
1 TTTTTTCTTTTTCT
15408229 TTTTTTCTTTTTCT
1 TTTTTTCTTTTTCT
*
15408243 TTTCTCTCTTTTT-T
1 TTT-TTTCTTTTTCT
15408257 TTTTT
1 TTTTT
15408262 GGATTGAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
13 1 0.03
14 21 0.70
15 8 0.27
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTTCTTTTTCT
Found at i:15410897 original size:6 final size:6
Alignment explanation
Indices: 15410881--15410909 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
15410871 CAAATAATAC
15410881 AATGC- AATGCA AATGCA AATGCA AATGCA
1 AATGCA AATGCA AATGCA AATGCA AATGCA
15410910 TGTAATGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
AATGCA
Found at i:15412973 original size:24 final size:24
Alignment explanation
Indices: 15412946--15412992 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
15412936 AAAATGACAA
15412946 TGATAACGA-AAACAATAATAATAG
1 TGATAAC-ATAAACAATAATAATAG
*
15412970 TGATAACATAAATAATAATAATA
1 TGATAACATAAACAATAATAATA
15412993 TAAAATGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.60, C:0.06, G:0.09, T:0.26
Consensus pattern (24 bp):
TGATAACATAAACAATAATAATAG
Found at i:15413059 original size:25 final size:24
Alignment explanation
Indices: 15413030--15413083 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
15413020 ATGCATTGAG
*
15413030 ATATATACGTAATAATAGAAATAAA
1 ATATATACGTAATAATA-AAAGAAA
* * *
15413055 ATATATATGTAGTATTAAAAGAAA
1 ATATATACGTAATAATAAAAGAAA
15413079 ATATA
1 ATATA
15413084 CATAATACGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.31
Consensus pattern (24 bp):
ATATATACGTAATAATAAAAGAAA
Found at i:15413591 original size:20 final size:20
Alignment explanation
Indices: 15413554--15413591 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15413544 TAAAAACTAA
*
15413554 ATTAAATTTGGAAAAAAAGG
1 ATTAAATTTCGAAAAAAAGG
15413574 ATTAAA-TTCGAAACAAAA
1 ATTAAATTTCGAAA-AAAA
15413592 TGAAGTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.58, C:0.05, G:0.13, T:0.24
Consensus pattern (20 bp):
ATTAAATTTCGAAAAAAAGG
Found at i:15413927 original size:36 final size:36
Alignment explanation
Indices: 15413880--15413972 Score: 177
Period size: 36 Copynumber: 2.6 Consensus size: 36
15413870 GGGTCATGCT
15413880 CAAAACGACGTCGTTTTGGGGTTAAAAGGCAGCCCC
1 CAAAACGACGTCGTTTTGGGGTTAAAAGGCAGCCCC
15413916 CAAAACGACGTCGTTTTGGGGTTAAAAGGCAGCCCC
1 CAAAACGACGTCGTTTTGGGGTTAAAAGGCAGCCCC
*
15413952 CAAAACGACGTTGTTTTGGGG
1 CAAAACGACGTCGTTTTGGGG
15413973 GCTATAAAAG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.22
Consensus pattern (36 bp):
CAAAACGACGTCGTTTTGGGGTTAAAAGGCAGCCCC
Found at i:15416025 original size:17 final size:17
Alignment explanation
Indices: 15416003--15416036 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
15415993 GATGGAAGAA
15416003 AACCGTCTGCTGGATAT
1 AACCGTCTGCTGGATAT
15416020 AACCGTCTGCTGGATAT
1 AACCGTCTGCTGGATAT
15416037 TGTTGATGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (17 bp):
AACCGTCTGCTGGATAT
Found at i:15419843 original size:17 final size:17
Alignment explanation
Indices: 15419821--15419884 Score: 65
Period size: 17 Copynumber: 3.6 Consensus size: 17
15419811 GAAATTTAAA
*
15419821 AAAATATAAAAATATAT
1 AAAATATAAATATATAT
*
15419838 AAAATAATTAAATATATAA
1 AAAAT-A-TAAATATATAT
*
15419857 AAAATTTAAATATATAT
1 AAAATATAAATATATAT
*
15419874 ATATATATAAA
1 A-AAATATAAA
15419885 CTCTAAAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
17 16 0.42
18 8 0.21
19 14 0.37
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAATATAAATATATAT
Found at i:15419852 original size:15 final size:17
Alignment explanation
Indices: 15419830--15419872 Score: 70
Period size: 17 Copynumber: 2.5 Consensus size: 17
15419820 AAAAATATAA
15419830 AAATATATAAAATAA-TT
1 AAATATATAAAA-AATTT
15419847 AAATATATAAAAAATTT
1 AAATATATAAAAAATTT
15419864 AAATATATA
1 AAATATATA
15419873 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 2 0.08
17 23 0.92
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
AAATATATAAAAAATTT
Found at i:15419891 original size:25 final size:24
Alignment explanation
Indices: 15419824--15419905 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 24
15419814 ATTTAAAAAA
* *
15419824 ATATAAAAATATATAAAATAATTAAAT
1 ATATAAAAA-ATCT-AAA-AATTATAT
* *
15419851 ATATAAAAAATTTAAATATATATAT
1 ATATAAAAAATCTAAAAAT-TATAT
* *
15419876 ATATATAAACTCTAAAAATTATAT
1 ATATAAAAAATCTAAAAATTATAT
*
15419900 AAATAA
1 ATATAA
15419906 TCTTTTAAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
24 11 0.24
25 22 0.49
26 3 0.07
27 9 0.20
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
ATATAAAAAATCTAAAAATTATAT
Found at i:15421532 original size:3 final size:3
Alignment explanation
Indices: 15421517--15421600 Score: 55
Period size: 3 Copynumber: 26.3 Consensus size: 3
15421507 ATCATTACTG
*
15421517 TTA TTA GTA TTA TTA TTA TT- TTA TTCA TTA GTCTA TTTA GTTA TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA -T-TA -TTA -TTA T-TA
** *
15421564 TTCA TT- TGC TTA TTA TTA TTA TTA TTA TTA TTT TTA T
1 TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
15421601 ATTGTCTTAC
Statistics
Matches: 65, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
2 3 0.05
3 44 0.68
4 15 0.23
5 3 0.05
ACGTcount: A:0.26, C:0.06, G:0.05, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:15421863 original size:21 final size:23
Alignment explanation
Indices: 15421832--15421873 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
15421822 GTTTTAATAC
15421832 ATATTACCTTTAAC-TGTTTCAT
1 ATATTACCTTTAACTTGTTTCAT
*
15421854 ATATT-CCTTTACCTTGTTTC
1 ATATTACCTTTAACTTGTTTC
15421874 GTTTATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.52
Consensus pattern (23 bp):
ATATTACCTTTAACTTGTTTCAT
Found at i:15427972 original size:26 final size:26
Alignment explanation
Indices: 15427906--15427981 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 26
15427896 AAAAGTAGCT
* * *
15427906 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATTATACCCCTA-G-GTGCA
*
15427934 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTATTATACCCCTAGGTGCA
*
15427960 AAATTACCATTATACCCCTAGG
1 AAATTACTATTATACCCCTAGG
15427982 GTTAATTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (26 bp):
AAATTACTATTATACCCCTAGGTGCA
Found at i:15428178 original size:28 final size:27
Alignment explanation
Indices: 15428084--15428224 Score: 198
Period size: 27 Copynumber: 5.2 Consensus size: 27
15428074 GAGGAAGCGT
*
15428084 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCAC-ATTATCTGTA
15428111 TCTGGTGGCTCTGCCACATATATCTGT-
1 TCTGGTGGCTCTGCCACAT-TATCTGTA
15428138 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCAC-ATTATCTGTA
15428166 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCAC-ATTATCTGTA
* *
15428194 TCTGGTGACTCTGTCACATTATCTGT-
1 TCTGGTGGCTCTGCCACATTATCTGTA
15428220 TCTGG
1 TCTGG
15428225 CAACCATGCT
Statistics
Matches: 107, Mismatches: 3, Indels: 9
0.90 0.03 0.08
Matches are distributed among these distances:
26 6 0.06
27 56 0.52
28 45 0.42
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACATTATCTGTA
Found at i:15428248 original size:30 final size:30
Alignment explanation
Indices: 15428212--15428271 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
15428202 CTCTGTCACA
15428212 TTATCTGTTCTGGCAACCATGCTACAAATT
1 TTATCTGTTCTGGCAACCATGCTACAAATT
*
15428242 TTATCTGTTCTGGCAGCCATGCTACAAATT
1 TTATCTGTTCTGGCAACCATGCTACAAATT
15428272 CTGTGGTGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (30 bp):
TTATCTGTTCTGGCAACCATGCTACAAATT
Found at i:15428340 original size:19 final size:22
Alignment explanation
Indices: 15428316--15428355 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
15428306 CTCCCCACAC
15428316 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
15428335 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
15428356 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:15435802 original size:18 final size:18
Alignment explanation
Indices: 15435767--15435804 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
15435757 AACAACACAT
*
15435767 ATATAAAATAAATAAAAA
1 ATATAAAATAAAGAAAAA
15435785 ATATAAAA-AAAGAGAAAA
1 ATATAAAATAAAGA-AAAA
15435803 AT
1 AT
15435805 CTACCTACGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.18
Consensus pattern (18 bp):
ATATAAAATAAAGAAAAA
Found at i:15456615 original size:44 final size:44
Alignment explanation
Indices: 15456468--15456622 Score: 154
Period size: 44 Copynumber: 3.5 Consensus size: 44
15456458 CACAGATCTT
* ** *
15456468 ACCCCATAAGCAGTAGGGAAACAGATCGAAGGCAACGAGCTTTA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTA
* * * * *
15456512 ACCCCCTAAGCAGTAGGGTAACA-AGCTGAAGTTTAT-AGATCTTA
1 ACCCCCTAAGCAGTAGGGAAACAGATC-GAAGATAATGAGCT-TTA
*
15456556 TCACCCC-AAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTA
1 AC-CCCCTAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTA
* *
15456600 ACCCCCTAAGTAGTAGGGTAACA
1 ACCCCCTAAGCAGTAGGGAAACA
15456623 AGCCAAATTT
Statistics
Matches: 88, Mismatches: 17, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
43 9 0.10
44 70 0.80
45 9 0.10
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (44 bp):
ACCCCCTAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTA
Found at i:15457072 original size:42 final size:42
Alignment explanation
Indices: 15457020--15457186 Score: 255
Period size: 42 Copynumber: 4.0 Consensus size: 42
15457010 GGAGTAGCTA
15457020 AAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATC
1 AAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATC
* *
15457062 AAAGCTACAGCAGATCTCCTTGAAGTTTCACTGGAATTGATC
1 AAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATC
* *
15457104 AAAGCTACAGCAGATCTCCTTGAAGTTTCAGTGG-ATTAATC
1 AAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATC
* * *
15457145 GAAGCCACAGCAAGATCTCCTTGAAGTTTCAATGGGATTGAT
1 AAAGCCACAGC-AGATCTCCTTGAAGTTTCAGTGGAATTGAT
15457187 TGAAGTCACG
Statistics
Matches: 115, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
41 15 0.13
42 95 0.83
43 5 0.04
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (42 bp):
AAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATC
Found at i:15459867 original size:294 final size:294
Alignment explanation
Indices: 15459338--15459914 Score: 1154
Period size: 294 Copynumber: 2.0 Consensus size: 294
15459328 TTATATATTT
15459338 ATATATCGTTATTATTAGTCCTTTTATTATTATTTCTATTTTAATAAATATTGCGTATATATTTG
1 ATATATCGTTATTATTAGTCCTTTTATTATTATTTCTATTTTAATAAATATTGCGTATATATTTG
15459403 TAATCTGGTATTATATGTTTTACATACATATGCTCCCTACTACTTCATATTCACATTATTACTAT
66 TAATCTGGTATTATATGTTTTACATACATATGCTCCCTACTACTTCATATTCACATTATTACTAT
15459468 CATGTTTAAATACCATGCATTATTATCGTTTCGCACTATTGTTATTTACATTATTATTATTTTCG
131 CATGTTTAAATACCATGCATTATTATCGTTTCGCACTATTGTTATTTACATTATTATTATTTTCG
15459533 TTTTCGTTTTCGTTATCATCGCCATTTTTATTTTTTCCATGTTTAACATTTGTTTATATTTGCAT
196 TTTTCGTTTTCGTTATCATCGCCATTTTTATTTTTTCCATGTTTAACATTTGTTTATATTTGCAT
15459598 ACTATTAGCCTTAATATTACTTCTATTTTAATAA
261 ACTATTAGCCTTAATATTACTTCTATTTTAATAA
15459632 ATATATCGTTATTATTAGTCCTTTTATTATTATTTCTATTTTAATAAATATTGCGTATATATTTG
1 ATATATCGTTATTATTAGTCCTTTTATTATTATTTCTATTTTAATAAATATTGCGTATATATTTG
15459697 TAATCTGGTATTATATGTTTTACATACATATGCTCCCTACTACTTCATATTCACATTATTACTAT
66 TAATCTGGTATTATATGTTTTACATACATATGCTCCCTACTACTTCATATTCACATTATTACTAT
15459762 CATGTTTAAATACCATGCATTATTATCGTTTCGCACTATTGTTATTTACATTATTATTATTTTCG
131 CATGTTTAAATACCATGCATTATTATCGTTTCGCACTATTGTTATTTACATTATTATTATTTTCG
15459827 TTTTCGTTTTCGTTATCATCGCCATTTTTATTTTTTCCATGTTTAACATTTGTTTATATTTGCAT
196 TTTTCGTTTTCGTTATCATCGCCATTTTTATTTTTTCCATGTTTAACATTTGTTTATATTTGCAT
15459892 ACTATTAGCCTTAATATTACTTC
261 ACTATTAGCCTTAATATTACTTC
15459915 ACCTTTTACG
Statistics
Matches: 283, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
294 283 1.00
ACGTcount: A:0.26, C:0.15, G:0.08, T:0.51
Consensus pattern (294 bp):
ATATATCGTTATTATTAGTCCTTTTATTATTATTTCTATTTTAATAAATATTGCGTATATATTTG
TAATCTGGTATTATATGTTTTACATACATATGCTCCCTACTACTTCATATTCACATTATTACTAT
CATGTTTAAATACCATGCATTATTATCGTTTCGCACTATTGTTATTTACATTATTATTATTTTCG
TTTTCGTTTTCGTTATCATCGCCATTTTTATTTTTTCCATGTTTAACATTTGTTTATATTTGCAT
ACTATTAGCCTTAATATTACTTCTATTTTAATAA
Found at i:15468084 original size:40 final size:41
Alignment explanation
Indices: 15468040--15468139 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 41
15468030 ACCAATTCTG
*
15468040 ACTTGTTTGAAAATCATTTT-AA-TGTGTTAAAATGATTTTA
1 ACTTGTTTGAAAATCATTTTGAATTG-GTTAAAATCATTTTA
* *
15468080 ACTTGATTG-AAATCATTTTGACTTGGTTAAAATCATTTTA
1 ACTTGTTTGAAAATCATTTTGAATTGGTTAAAATCATTTTA
* *
15468120 ACTTGATTTTAAAATTATTT
1 ACTTG-TTTGAAAATCATTT
15468140 CAAAATTTTC
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
39 10 0.20
40 28 0.56
41 4 0.08
42 8 0.16
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.48
Consensus pattern (41 bp):
ACTTGTTTGAAAATCATTTTGAATTGGTTAAAATCATTTTA
Found at i:15468097 original size:20 final size:20
Alignment explanation
Indices: 15468049--15468127 Score: 99
Period size: 20 Copynumber: 4.0 Consensus size: 20
15468039 GACTTGTTTG
15468049 AAAATCATTTTAA-TGTG-TT
1 AAAATCATTTTAACT-TGATT
*
15468068 AAAATGATTTTAACTTGATT
1 AAAATCATTTTAACTTGATT
* * *
15468088 GAAATCATTTTGACTTGGTT
1 AAAATCATTTTAACTTGATT
15468108 AAAATCATTTTAACTTGATT
1 AAAATCATTTTAACTTGATT
15468128 TTAAAATTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
19 14 0.28
20 36 0.72
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.46
Consensus pattern (20 bp):
AAAATCATTTTAACTTGATT
Found at i:15468846 original size:26 final size:26
Alignment explanation
Indices: 15468807--15468916 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
15468797 TGATACAAAT
*
15468807 TGATAATAGATTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
15468833 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
15468859 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
15468885 TGATAAT-GGTTTAGGTAAATGTTTCA
1 TGATAATAGG-TTAGGTAAATGTTCCA
15468911 TGATAA
1 TGATAA
15468917 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 2 0.03
26 78 0.98
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:15473084 original size:21 final size:20
Alignment explanation
Indices: 15473060--15473109 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
15473050 AGGTTTTTTA
15473060 AAATTTTTTTGAAGTTTCAAT
1 AAATTTTTTTG-AGTTTCAAT
* *
15473081 AAATATTTCTTGAGTTTTAAT
1 AAAT-TTTTTTGAGTTTCAAT
*
15473102 GAATTTTT
1 AAATTTTT
15473110 GGAACATAGC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 3 0.12
21 15 0.62
22 6 0.25
ACGTcount: A:0.32, C:0.04, G:0.10, T:0.54
Consensus pattern (20 bp):
AAATTTTTTTGAGTTTCAAT
Found at i:15476080 original size:40 final size:40
Alignment explanation
Indices: 15475970--15476080 Score: 125
Period size: 41 Copynumber: 2.8 Consensus size: 40
15475960 TAGATGGAGT
* * * * * *
15475970 TTTAGCGACGCTTTTAAAAAAACGCCGCAATAGGTCGACA
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTATAAGTCGACA
* *
15476010 TTTAGCGGCGTTTTTTGAAAAAGCGCCGCTATAAGTCGGCC
1 TTTAGCGGCGTTTTTT-AAAAAGCGCCGCTATAAGTCGACA
15476051 TTTAGCGGCGTTTGTTT-AAAAGCGCCGCTA
1 TTTAGCGGCGTTT-TTTAAAAAGCGCCGCTA
15476081 AAGGTTAATC
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
40 26 0.43
41 32 0.52
42 3 0.05
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTTAAAAAGCGCCGCTATAAGTCGACA
Found at i:15476297 original size:113 final size:115
Alignment explanation
Indices: 15476140--15476364 Score: 312
Period size: 113 Copynumber: 2.0 Consensus size: 115
15476130 CGTTTTTACA
* * *
15476140 AAAACGCCGATATAGGTCAACCTATAGCGGCGTTTTTCATAAAAACGCCACTAAAATGTT-AGAA
1 AAAACGCCGATAAAGGTAAACCTATAGCGGCGTTTGTCATAAAAACGCCACTAAAATGTTAAG-A
* *
15476204 AAAACGACGTCATTTTCTATGAGCTTAATTGGCAGTAGCGGCGTTTTCTAG
65 AAAACGACGTCATTTTATATGAGCTCAATTGGCAGTAGCGGCGTTTTCTAG
* * *
15476255 AAAACGCCGCTAAAGG-AAACCTATAGCGGCGTTTGTGA-AAAAACGCCACTAAAATGTTAAGGA
1 AAAACGCCGATAAAGGTAAACCTATAGCGGCGTTTGTCATAAAAACGCCACTAAAATGTTAAGAA
* * **
15476318 AAACGACGTCGTTTTATATGTGCTCCTTTGGCAGTAGCGGCGTTTTC
66 AAACGACGTCATTTTATATGAGCTCAATTGGCAGTAGCGGCGTTTTC
15476365 CCAAAAACGC
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
113 62 0.64
114 21 0.22
115 14 0.14
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (115 bp):
AAAACGCCGATAAAGGTAAACCTATAGCGGCGTTTGTCATAAAAACGCCACTAAAATGTTAAGAA
AAACGACGTCATTTTATATGAGCTCAATTGGCAGTAGCGGCGTTTTCTAG
Found at i:15478072 original size:18 final size:17
Alignment explanation
Indices: 15478049--15478082 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
15478039 TTTAGATTAA
15478049 TGATGTTGATACTGATGT
1 TGATGTTGAT-CTGATGT
15478067 TGATGTTGATCTGATG
1 TGATGTTGATCTGATG
15478083 ATTATACCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.21, C:0.06, G:0.29, T:0.44
Consensus pattern (17 bp):
TGATGTTGATCTGATGT
Found at i:15480096 original size:134 final size:133
Alignment explanation
Indices: 15479873--15480125 Score: 488
Period size: 134 Copynumber: 1.9 Consensus size: 133
15479863 TGGTGATTCC
15479873 ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
15479938 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
15480003 TAT
131 TAT
*
15480006 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTTCATGTTTCTATCCAACTTATGTGTTTAGT
1 ATTTTGGTTATTTAGATGTTATTTTGGTCTG-TTTTCATGTTTCTATCCAACTTATGTGTTTAGT
15480071 GTGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
65 GTGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
15480126 TGTTGAATTC
Statistics
Matches: 118, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
133 30 0.25
134 88 0.75
ACGTcount: A:0.20, C:0.10, G:0.19, T:0.52
Consensus pattern (133 bp):
ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
TAT
Found at i:15482137 original size:21 final size:21
Alignment explanation
Indices: 15482113--15482152 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
15482103 GTTTTTATGT
*
15482113 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
15482134 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
15482153 GAATTAGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:15484095 original size:9 final size:9
Alignment explanation
Indices: 15484083--15484308 Score: 143
Period size: 9 Copynumber: 24.6 Consensus size: 9
15484073 TATTTGATAT
*
15484083 CATAATTTA
1 CATAACTTA
15484092 CATAACTTA
1 CATAACTTA
* *
15484101 TATAACATA
1 CATAACTTA
*
15484110 TATAACTTA
1 CATAACTTA
15484119 CATAACTTA
1 CATAACTTA
* *
15484128 TATAACCTA
1 CATAACTTA
15484137 CATAACTTA
1 CATAACTTA
*
15484146 TATAACTTA
1 CATAACTTA
*
15484155 TATAACTTA
1 CATAACTTA
* *
15484164 GATAA-ATA
1 CATAACTTA
*
15484172 TATAACTTA
1 CATAACTTA
15484181 CATAACTTA
1 CATAACTTA
15484190 CATAATGCTTA
1 CATAA--CTTA
* *
15484201 AATATATTTTATA
1 CATA-A--CT-TA
*
15484214 TCATAATTTA
1 -CATAACTTA
15484224 CATAACTTA
1 CATAACTTA
15484233 CATAACTTA
1 CATAACTTA
*
15484242 TATAACTTA
1 CATAACTTA
* *
15484251 GATAA-ATA
1 CATAACTTA
* *
15484259 TATAATTTA
1 CATAACTTA
*
15484268 CATAA-ATA
1 CATAACTTA
* * *
15484276 TATATCATA
1 CATAACTTA
*
15484285 TCATAAATTA
1 -CATAACTTA
15484295 CATAACTTA
1 CATAACTTA
15484304 CATAA
1 CATAA
15484309 TACTTAAATA
Statistics
Matches: 174, Mismatches: 34, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
8 17 0.10
9 132 0.76
10 7 0.04
11 9 0.05
12 3 0.02
13 3 0.02
14 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:15484105 original size:18 final size:18
Alignment explanation
Indices: 15484083--15484308 Score: 161
Period size: 18 Copynumber: 12.3 Consensus size: 18
15484073 TATTTGATAT
* *
15484083 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
15484101 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
15484119 CATAACTTATATAACCTA
1 CATAACTTATATAACTTA
15484137 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
15484155 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
* *
15484172 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
**
15484190 CATAATGCTTAAATATATTTTATA
1 CATAA--CTT--ATATA-ACT-TA
* *
15484214 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
15484233 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
15484251 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
15484268 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
15484285 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
15484304 CATAA
1 CATAA
15484309 TACTTAAATA
Statistics
Matches: 164, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
17 38 0.23
18 94 0.57
19 10 0.06
20 4 0.02
21 4 0.02
22 4 0.02
23 3 0.02
24 2 0.01
25 5 0.03
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:15484296 original size:114 final size:114
Alignment explanation
Indices: 15484111--15484332 Score: 304
Period size: 114 Copynumber: 1.9 Consensus size: 114
15484101 TATAACATAT
* * *
15484111 ATAACTTACATAACTTATATAACCTACATAACTTATATAACTTATATAACTTAGATAAATATATA
1 ATAACTTACATAACTTATATAACCTACATAACATATATAACTTACATAAATTAGATAAATATATA
* * * *
15484176 ACTTACATAACTTACATAATGCTTAAATATATTTTATATCATAATTTAC
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
15484225 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATATATCATATCA
1 ATAACTTACATAACTTATATAACCTACATAACATATATAACTTACATAAATTAGATA-AATAT-A
15484288 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
15484333 CATAACTAGT
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 71 0.76
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.39
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACCTACATAACATATATAACTTACATAAATTAGATAAATATATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:15490008 original size:21 final size:20
Alignment explanation
Indices: 15489953--15490009 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
15489943 ACAACTTAGA
* *
15489953 GCAGAGGCAGAGAGAGGGAG
1 GCAGAGGCAGAGCGAGAGAG
* *
15489973 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAG-AGCGAGAGAG
15489994 GCAGAGGCACGAGCGA
1 GCAGAGGCA-GAGCGA
15490010 TGGTAGCAGA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
20 8 0.28
21 20 0.69
22 1 0.03
ACGTcount: A:0.30, C:0.19, G:0.49, T:0.02
Consensus pattern (20 bp):
GCAGAGGCAGAGCGAGAGAG
Found at i:15490291 original size:33 final size:33
Alignment explanation
Indices: 15490243--15490322 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 33
15490233 AGAATTAATA
* *
15490243 TTTTTGGTTGTATTTTTTATGTTAAATTTGTTG
1 TTTTTGGTTGCATTTTTTATATTAAATTTGTTG
* *
15490276 TTTTTGGCTGCA--TTTTATATTATATTTGTTG
1 TTTTTGGTTGCATTTTTTATATTAAATTTGTTG
* *
15490307 TATTTGGTTGGATTTT
1 TTTTTGGTTGCATTTT
15490323 AATGCAGGAA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
31 26 0.68
33 12 0.32
ACGTcount: A:0.15, C:0.03, G:0.19, T:0.64
Consensus pattern (33 bp):
TTTTTGGTTGCATTTTTTATATTAAATTTGTTG
Found at i:15490525 original size:86 final size:86
Alignment explanation
Indices: 15490375--15490770 Score: 587
Period size: 86 Copynumber: 4.6 Consensus size: 86
15490365 ATCTGCCAAA
*** * * * **
15490375 TTTAGCGGCGTTTGTAAAAAAAGCGCCGCTAAAATCCCTGACCTTTAGCGGCGCTTCTCCCACAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTATCACAA
15490440 ACGCCGCTAAAAGCATTGACC
66 ACGCCGCTAAAAGCATTGACC
15490461 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTATCACAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTATCACAA
* *
15490526 ACACCGCTAAAAGCCTTGACC
66 ACGCCGCTAAAAGCATTGACC
* *
15490547 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAAGCCTTAACCTTTAGCGGCGCTTTTATCACAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTATCACAA
*
15490612 ACGCCGCTAAAAGCTTTGACC
66 ACGCCGCTAAAAGCATTGACC
* * *
15490633 TTTAGCGGCGTTTGTGGTAAAAGCGTCGCTAAAAGCCTTAACCTTTAGCGGCGCTTTTATCACAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTATCACAA
* * * *
15490698 ACGCCGCTAAAGGTCA-AGGCT
66 ACGCCGCTAAAAG-CATTGACC
*
15490719 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAAGCCTTGACCTTTAGCGGC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGCCTTGACCTTTAGCGGC
15490771 TTTTTTCCAA
Statistics
Matches: 283, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
86 282 1.00
87 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (86 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTATCACAA
ACGCCGCTAAAAGCATTGACC
Found at i:15490776 original size:43 final size:43
Alignment explanation
Indices: 15490375--15490776 Score: 398
Period size: 43 Copynumber: 9.3 Consensus size: 43
15490365 ATCTGCCAAA
* *** * *
15490375 TTTAGCGGCGTTTGTAAAAAAAGCGCCGCTAAAATCCCTGACC
1 TTTAGCGGCGTTTTTGGCAAAAGCGCCGCTAAAAGCCTTGACC
* * ** *
15490418 TTTAGCGGCGCTTCTCCCACAAA-CGCCGCTAAAAGCATTGACC
1 TTTAGCGGCGTTTTTGGCA-AAAGCGCCGCTAAAAGCCTTGACC
* *
15490461 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGTTTTTGGCAAAAGCGCCGCTAAAAGCCTTGACC
* ** *
15490504 TTTAGCGGCGCTTTTATCACAAA-CACCGCTAAAAGCCTTGACC
1 TTTAGCGGCGTTTTTGGCA-AAAGCGCCGCTAAAAGCCTTGACC
* *
15490547 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAAGCCTTAACC
1 TTTAGCGGCGTTTTTGGCAAAAGCGCCGCTAAAAGCCTTGACC
* ** *
15490590 TTTAGCGGCGCTTTTATCACAAA-CGCCGCTAAAAGCTTTGACC
1 TTTAGCGGCGTTTTTGGCA-AAAGCGCCGCTAAAAGCCTTGACC
* * * *
15490633 TTTAGCGGCGTTTGTGGTAAAAGCGTCGCTAAAAGCCTTAACC
1 TTTAGCGGCGTTTTTGGCAAAAGCGCCGCTAAAAGCCTTGACC
* ** * * ** * *
15490676 TTTAGCGGCGCTTTTATCACAAA-CGCCGCTAAAGGTCAAGGCT
1 TTTAGCGGCGTTTTTGGCA-AAAGCGCCGCTAAAAGCCTTGACC
*
15490719 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGTTTTTGGCAAAAGCGCCGCTAAAAGCCTTGACC
*
15490762 TTTAGCGGCTTTTTT
1 TTTAGCGGCGTTTTT
15490777 CCAATAAACG
Statistics
Matches: 287, Mismatches: 64, Indels: 16
0.78 0.17 0.04
Matches are distributed among these distances:
42 12 0.04
43 263 0.92
44 12 0.04
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (43 bp):
TTTAGCGGCGTTTTTGGCAAAAGCGCCGCTAAAAGCCTTGACC
Found at i:15491532 original size:10 final size:10
Alignment explanation
Indices: 15491505--15491553 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
15491495 TTAAATTCTA
*
15491505 AAAGACAAAT
1 AAAGATAAAT
15491515 ACAA-ATAAAT
1 A-AAGATAAAT
*
15491525 AAAGATAATT
1 AAAGATAAAT
15491535 AAAGATAAAT
1 AAAGATAAAT
15491545 AAAGATAAA
1 AAAGATAAA
15491554 AGCTAAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 30 0.88
11 2 0.06
ACGTcount: A:0.69, C:0.04, G:0.08, T:0.18
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:15492187 original size:6 final size:6
Alignment explanation
Indices: 15492176--15492210 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
15492166 TACATCACTT
15492176 TTTTTC TTTTTC TTTTTC TTTTT- TTTTCTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTT-TC TTTTT
15492211 ATTTCTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 4 0.15
6 19 0.70
7 4 0.15
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:15492193 original size:12 final size:11
Alignment explanation
Indices: 15492174--15492220 Score: 60
Period size: 12 Copynumber: 4.2 Consensus size: 11
15492164 AATACATCAC
15492174 TTTTTTTCTTT
1 TTTTTTTCTTT
15492185 TTCTTTTTC-TT
1 TT-TTTTTCTTT
15492196 TTTTTTTCTCTT
1 TTTTTTTCT-TT
*
15492208 TTTATTTCTTT
1 TTTTTTTCTTT
15492219 TT
1 TT
15492221 ATCATTATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 6 0.19
11 10 0.31
12 16 0.50
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:15492199 original size:22 final size:22
Alignment explanation
Indices: 15492174--15492220 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
15492164 AATACATCAC
*
15492174 TTTTTTTCT-TTTTCTTTTTCTT
1 TTTTTTTCTCTTTT-TATTTCTT
15492196 TTTTTTTCTCTTTTTATTTCTT
1 TTTTTTTCTCTTTTTATTTCTT
15492218 TTT
1 TTT
15492221 ATCATTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (22 bp):
TTTTTTTCTCTTTTTATTTCTT
Found at i:15492908 original size:2 final size:2
Alignment explanation
Indices: 15492901--15492926 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
15492891 CATTCTTAAA
15492901 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
15492927 GGGCAACAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15499582 original size:17 final size:17
Alignment explanation
Indices: 15499557--15499591 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
15499547 TGTTTGGGCC
15499557 CATACGGGTGAGCCACA
1 CATACGGGTGAGCCACA
* *
15499574 CATATGGGTGAGTCACA
1 CATACGGGTGAGCCACA
15499591 C
1 C
15499592 GAGCGTGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.26, G:0.29, T:0.17
Consensus pattern (17 bp):
CATACGGGTGAGCCACA
Found at i:15500926 original size:17 final size:17
Alignment explanation
Indices: 15500896--15500932 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
15500886 CTTGGGTGAT
* *
15500896 AAAAAGAATGATTTTTA
1 AAAAAAAATAATTTTTA
15500913 AAAAAAAATAATTTTTA
1 AAAAAAAATAATTTTTA
15500930 AAA
1 AAA
15500933 TGTATTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.32
Consensus pattern (17 bp):
AAAAAAAATAATTTTTA
Found at i:15504589 original size:263 final size:263
Alignment explanation
Indices: 15504084--15504686 Score: 596
Period size: 263 Copynumber: 2.3 Consensus size: 263
15504074 TGAAATTTTG
* * * *
15504084 AAGAGATATTCGATTATTTTAAACAAACAAGAAATTGCAACCCAGCACGATAGGGTACTATTCCC
1 AAGA-ATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGGCACTAATCCC
* * * *
15504149 GAATTGCCAAACATCGAATATTGTCTTCGTTTTAAAGGGTTTTTAGAAAACGTAAGTGAAATTTC
65 GAATTGCCAAACACCGAATATTGCCTTCGTTTTAAAGGATTTTTAGAAAACATAAGTGAAATTTC
* *
15504214 GAAGGAATCTTCGATTGTTTTGAAAAAAAAGAGAAATCACAACCCAACACGTTAGGGTACGATTC
130 GAAGGAATCTTCGATTATTTTGAAAAAAAAGAGAAATCACAACCCAACACGTTAGGGCACGATTC
* * * * *
15504279 CCGAATTATCAAACACCGAGTAATGTCTTCATTTTGGAAGGTTTTTAATAA-ACACGAGTGAAAG
195 CCGAATTACCAAACACCGAGCAATGCCTTCATTTTGAAAGATTTTTAA-AAGACACGAGTGAAAG
15504343 CCTAA
259 CCTAA
*
15504348 AAGAATATTCGATTGTTTTGAACAAACGAGAAATCT-CAACCCAGCACGATAGGGCA-TGAATCC
1 AAGAATATTCGATTATTTTGAACAAACGAGAAAT-TGCAACCCAGCACGATAGGGCACT-AATCC
* * ** * * *
15504411 TGGATTGTTAAACGCCGAATATTGCCTTCGTTTTAAATGATTTTTAGAAGACATGAA-TGAAATT
64 CGAATTGCCAAACACCGAATATTGCCTTCGTTTTAAAGGATTTTTAGAAAACAT-AAGTGAAATT
* * * * * * ** *
15504475 TTGAAGGGATGTTTGATTATTTT-AAGCAAACA-AGAAATTGCAACCCAGCACGTTAGGGCACGA
128 TCGAAGGAATCTTCGATTATTTTGAA-AAAAAAGAGAAATCACAACCCAACACGTTAGGGCACGA
* * * * * * *
15504538 TTTCGCGAATTGCCAAATATC-A-CACATCGCCTTCGTTTT-AAAGAATTTTTAAAAGGCATGAG
192 -TTCCCGAATTACCAAACACCGAGCA-AT-GCCTTCATTTTGAAAG-ATTTTTAAAAGACACGAG
* * *
15504600 TGAAATCTTGA
253 TGAAAGCCTAA
* * * * * *
15504611 AGGGATATTCGATTATTTTGAGCAAACGCA-AAATTGCAACCCAACACGTTAGGGCACTATTCCA
1 AAGAATATTCGATTATTTTGAACAAACG-AGAAATTGCAACCCAGCACGATAGGGCACTAATCC-
15504675 CGAATTGCCAAA
64 CGAATTGCCAAA
15504687 TATCGAATCT
Statistics
Matches: 273, Mismatches: 53, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
261 1 0.00
262 39 0.14
263 216 0.79
264 17 0.06
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (263 bp):
AAGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGGCACTAATCCCG
AATTGCCAAACACCGAATATTGCCTTCGTTTTAAAGGATTTTTAGAAAACATAAGTGAAATTTCG
AAGGAATCTTCGATTATTTTGAAAAAAAAGAGAAATCACAACCCAACACGTTAGGGCACGATTCC
CGAATTACCAAACACCGAGCAATGCCTTCATTTTGAAAGATTTTTAAAAGACACGAGTGAAAGCC
TAA
Found at i:15504715 original size:132 final size:132
Alignment explanation
Indices: 15504074--15504722 Score: 400
Period size: 132 Copynumber: 4.9 Consensus size: 132
15504064 AAAATACGAG
* * * * *
15504074 TGAAATTTTGAAGAGATATTCGATTATTTTAAACAAACAAGAAATTGCAACCCAGCACGATAGGG
1 TGAAATCTTGAAGGGATATTCGATTATTTTAAGCAAACAAGAAATTGCAACCCAACACGTTAGGG
* * * * * * ** *
15504139 TACTATTCC-CGAATTGCCAAACATCGA-ATATTGTCTTCGTTTTAAAGGGTTTTTAGAAA-ACG
66 CACGATTCCACGAATTGCCAAATATC-ACACATCGCCTTCGTTTTAAAGAATTTTTA-AAAGACA
15504201 T-AA
129 TGAA
* * * * * **
15504204 GTGAAAT-TTCGAAGGAATCTTCGATTGTTTTGAA-AAAAAAGAGAAATCACAACCCAACACGTT
1 -TGAAATCTT-GAAGGGATATTCGATTATTTT-AAGCAAACA-AGAAATTGCAACCCAACACGTT
* ** * * * * * * *
15504267 AGGGTACGATTCC-CGAATTATCAAACACCGAGTA-AT-GTCTTCATTTTGGAAG-GTTTTTAAT
62 AGGGCACGATTCCACGAATTGCCAAATATC-A-CACATCGCCTTCGTTTT-AAAGAATTTTTAA-
* *
15504328 AA-ACACGAG
123 AAGACATGAA
* * * * * * * * *
15504337 TGAAAGCCTAAAAGAATATTCGATTGTTTTGAA-CAAACGAGAAATCT-CAACCCAGCACGATAG
1 TGAAATCTTGAAGGGATATTCGATTATTTT-AAGCAAACAAGAAAT-TGCAACCCAACACGTTAG
* * * * ** *** * * *
15504400 GGCATGAATCC-TGGATTGTTAAACGCCGA-ATATTGCCTTCGTTTTAAATG-ATTTTTAGAAGA
64 GGCACGATTCCACGAATTGCCAAATATC-ACACATCGCCTTCGTTTTAAA-GAATTTTTAAAAGA
15504462 CATGAA
127 CATGAA
* * * *
15504468 TGAAATTTTGAAGGGATGTTTGATTATTTTAAGCAAACAAGAAATTGCAACCCAGCACGTTAGGG
1 TGAAATCTTGAAGGGATATTCGATTATTTTAAGCAAACAAGAAATTGCAACCCAACACGTTAGGG
* * *
15504533 CACGATTTCGCGAATTGCCAAATATCACACATCGCCTTCGTTTTAAAGAATTTTTAAAAGGCATG
66 CACGATTCCACGAATTGCCAAATATCACACATCGCCTTCGTTTTAAAGAATTTTTAAAAGACATG
*
15504598 AG
131 AA
* *
15504600 TGAAATCTTGAAGGGATATTCGATTATTTTGAGCAAACGCA-AAATTGCAACCCAACACGTTAGG
1 TGAAATCTTGAAGGGATATTCGATTATTTTAAGCAAAC-AAGAAATTGCAACCCAACACGTTAGG
* * * *
15504664 GCACTATTCCACGAATTGCCAAATATCGA-ATC-TCGTCTTTGTTTTAGAGAATTTTTAAA
65 GCACGATTCCACGAATTGCCAAATATC-ACA-CATCGCCTTCGTTTTAAAGAATTTTTAAA
15504723 TGAGTACTTA
Statistics
Matches: 413, Mismatches: 83, Indels: 43
0.77 0.15 0.08
Matches are distributed among these distances:
129 1 0.00
130 11 0.03
131 147 0.36
132 243 0.59
133 10 0.02
134 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (132 bp):
TGAAATCTTGAAGGGATATTCGATTATTTTAAGCAAACAAGAAATTGCAACCCAACACGTTAGGG
CACGATTCCACGAATTGCCAAATATCACACATCGCCTTCGTTTTAAAGAATTTTTAAAAGACATG
AA
Found at i:15507833 original size:132 final size:132
Alignment explanation
Indices: 15507564--15507906 Score: 508
Period size: 132 Copynumber: 2.6 Consensus size: 132
15507554 ACTGGGGACG
* * *
15507564 AGATCTGCAATCTTTAGCCTACTCCACTATAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTTG
1 AGATCTACAATC-TCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATC-TG
* * * * *
15507629 CTTCACTGCAATTTCAGGAAGACTAGATTCACCATTTTTGATCTGCTCCACTGCACTTTCAGGGA
64 CTTCACTACAATTTAAGGAAGACTAGATTCACCATCTTTGATCTGCTCCACTACACTTTCAAGGA
*
15507694 GACA
129 AACA
*
15507698 AGATCTACAATCTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCCTAAATCTGCT
1 AGATCTACAATCTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCT
* *
15507763 TCACTACAATTTAAGGAAGACTAGATTCACCATCTTTGATCTGTTTCACTACAAC-TTCAAGGAA
66 TCACTACAATTTAAGGAAGACTAGATTCACCATCTTTGATCTGCTCCACTAC-ACTTTCAAGGAA
*
15507827 AGA
130 ACA
* * *
15507830 AGATCTAAAATTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCT
1 AGATCTACAATCTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCT
15507895 TCACTACAATTT
66 TCACTACAATTT
15507907 CAGGGAAACA
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
132 132 0.69
133 48 0.25
134 11 0.06
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (132 bp):
AGATCTACAATCTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCT
TCACTACAATTTAAGGAAGACTAGATTCACCATCTTTGATCTGCTCCACTACACTTTCAAGGAAA
CA
Found at i:15507901 original size:87 final size:86
Alignment explanation
Indices: 15507801--15508087 Score: 364
Period size: 87 Copynumber: 3.3 Consensus size: 86
15507791 ACCATCTTTG
*
15507801 ATCTGTTTCACTACAACTTCAAGGAAAGAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
1 ATCTGCTTCACTACAACTTC-AGGAAAGAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
15507866 GGGAGCTAGGATGGTGGCTTAA
65 GGGAGCTAGGATGGTGGCTTAA
* * * *
15507888 ATCTGCTTCACTACAATTTCAGGGAAACAAAATCTAAAATTTCAGCCTACCCCACTACAACTTTA
1 ATCTGCTTCACTACAACTTCA-GGAAAGAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
15507953 GGGAGCTAGGATGGTGGCTTAA
65 GGGAGCTAGGATGGTGGCTTAA
* **** * * *
15507975 ATCTGCTTCACTGCAACTTCAGG-AAGCCAAGAT-TCGCCGTCTTC-GATCTGCTTCACTACAAC
1 ATCTGCTTCACTACAACTTCAGGAAAG--AAGATCT-AAAAT-TTCAG-CCTACTCCACTACAAC
15508037 TTTAGGGAGCTAGGATGGTGGCTTAA
61 TTTAGGGAGCTAGGATGGTGGCTTAA
*
15508063 ATCTGCTTCACTGCAACTTCAGGAA
1 ATCTGCTTCACTACAACTTCAGGAA
15508088 GCCAAGATTC
Statistics
Matches: 176, Mismatches: 17, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
85 2 0.01
86 4 0.02
87 105 0.60
88 64 0.36
89 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (86 bp):
ATCTGCTTCACTACAACTTCAGGAAAGAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTAG
GGAGCTAGGATGGTGGCTTAA
Found at i:15508089 original size:88 final size:88
Alignment explanation
Indices: 15507853--15508132 Score: 379
Period size: 88 Copynumber: 3.2 Consensus size: 88
15507843 CAGCCTACTC
* * *
15507853 CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTACAATTTCAGGGAA-ACA
1 CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCA-GGAAGCCA
* **** * * **
15507917 A-AATCTAAAAT-TTC-AGCCTACCC
65 AGATTC-GCCGTCTTCGA-TCTGCTT
15507940 CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAA
1 CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAA
15508005 GATTCGCCGTCTTCGATCTGCTT
66 GATTCGCCGTCTTCGATCTGCTT
15508028 CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAA
1 CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAA
15508093 GATTCGCCGTCTTCGATCTGCTT
66 GATTCGCCGTCTTCGATCTGCTT
* *
15508116 CACTGCAACTTCAGGGA
1 CACTACAACTTTAGGGA
15508133 AACAAGATCT
Statistics
Matches: 175, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
86 4 0.02
87 58 0.33
88 112 0.64
89 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (88 bp):
CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAA
GATTCGCCGTCTTCGATCTGCTT
Found at i:15508140 original size:45 final size:45
Alignment explanation
Indices: 15507975--15508130 Score: 208
Period size: 45 Copynumber: 3.5 Consensus size: 45
15507965 GGTGGCTTAA
15507975 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCG
1 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCG
* * * * * ** * **
15508020 ATCTGCTTCACTACAACTTTAGGGAGCTAGGA-T-GGTGGCTTAA
1 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCG
15508063 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCG
1 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCG
15508108 ATCTGCTTCACTGCAACTTCAGG
1 ATCTGCTTCACTGCAACTTCAGG
15508131 GAAACAAGAT
Statistics
Matches: 89, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
43 32 0.36
44 2 0.02
45 55 0.62
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (45 bp):
ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCG
Found at i:15508213 original size:132 final size:132
Alignment explanation
Indices: 15508028--15508406 Score: 643
Period size: 132 Copynumber: 2.9 Consensus size: 132
15508018 CGATCTGCTT
15508028 CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAA
1 CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAA
*
15508093 GATTCGCCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGACTAC
66 GATTCGCCGTCTTCGATCTGCTTCACTGTAACTTCAGGGAAACAAGATCTAAAATTTCAGACTAC
15508158 TC
131 TC
*
15508160 CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTACAACTTCAGGAAGCCAA
1 CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAA
* * * *
15508225 GATTCGCCAG-CTTCGATCTGCTTCACTGTAATTTTAGGGAAACAAAATCTAAAATTTCAGCCTA
66 GATTCGCC-GTCTTCGATCTGCTTCACTGTAACTTCAGGGAAACAAGATCTAAAATTTCAGACTA
15508289 CTC
130 CTC
* *
15508292 CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAAGAAGCCAA
1 CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAA
* * *
15508357 GATTCGCCATCTTCGATTTGCTTCACTGTAACTTCAGGGAAACGAGATCT
66 GATTCGCCGTCTTCGATCTGCTTCACTGTAACTTCAGGGAAACAAGATCT
15508407 GTAGGATTCG
Statistics
Matches: 230, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
132 229 1.00
133 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (132 bp):
CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAA
GATTCGCCGTCTTCGATCTGCTTCACTGTAACTTCAGGGAAACAAGATCTAAAATTTCAGACTAC
TC
Found at i:15520306 original size:131 final size:131
Alignment explanation
Indices: 15519973--15520593 Score: 403
Period size: 131 Copynumber: 4.7 Consensus size: 131
15519963 TTCCGAAGAG
* * ** * *
15519973 ATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCATCACGATAGGGTACT-ATTCCTCGAA
1 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCA-TGATTCC-CGAA
* ** ** *
15520037 TTG-CTAAACATCAAATATCGTCTTCGTTTTAAAGGGTTTTTAGAAAACGTGAGTGAAATTTCGA
64 TTGTC-AAACACCAAATATCGTCTTCGTTTTAAAGGGTTTTTAGAAAACACGAGTGAAACCTCAA
15520101 AGGA
128 AGGA
* * * * * *
15520105 ATCTTCTATTGTTTTGAAAAAAAGAGAAATCACAACCCAACAC-ATTAGGGCACGATTCCAGAAT
1 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGA-TAGGGCATGATTCCCGAAT
* * * *
15520169 TATCAAACACCAAGTATTGTCTTCGTTTTGGAA-GGTTTTTA-ATAAACACGAGTGAAAGCCT-A
65 TGTCAAACACCAAATATCGTCTTCGTTTT-AAAGGGTTTTTAGA-AAACACGAGTGAAA-CCTCA
15520231 AAGGA
127 AAGGA
* *
15520236 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCATGAATCCCGGATT
1 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCATGATTCCCGAATT
* * *** * * * * * ** **
15520301 GTCAAACGCCGAATATTACCTTCGTTTTAAATGATTTTTAGAAGACATGAATGAAATTTTGAAGG
66 GTCAAACACCAAATATCGTCTTCGTTTTAAAGGGTTTTTAGAAAACACGAGTGAAACCTCAAAGG
*
15520366 G
131 A
* * * ** * * * **
15520367 ATATTTGATTATTTT-AAGCAAACAAGAAATTGCAACCCAGCACGTTAGGGCACGATTTCGTGAA
1 ATATTCGATTGTTTTGAA-CAAACGAGAAATCACAACCCAACACGATAGGGCATGA-TTCCCGAA
* * * ** * * ** * * **
15520431 TTGCCAAATATCGCACATCGCCTTCGTTTTAAAGAATTTTTA-AAAGGCACGAGTGAAATCTTGA
64 TTGTCAAACACCAAATATCGTCTTCGTTTTAAAGGGTTTTTAGAAA-ACACGAGTGAAACCTCAA
*
15520495 AGGG
128 AGGA
* * ** * * * *
15520499 ATATTCGATTATTTTGAACAAACGCGAAATTGCAACCCAACACGTTAGGGTATTATTCCGCGAGT
1 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCATGATTCC-CGAAT
* * * * *
15520564 TGCCAAATATCGAATCTCGTCTTCGTTTTA
65 TGTCAAACACCAAATATCGTCTTCGTTTTA
15520594 GAGAATTTTT
Statistics
Matches: 388, Mismatches: 86, Indels: 30
0.77 0.17 0.06
Matches are distributed among these distances:
130 6 0.02
131 201 0.52
132 179 0.46
133 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (131 bp):
ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCATGATTCCCGAATT
GTCAAACACCAAATATCGTCTTCGTTTTAAAGGGTTTTTAGAAAACACGAGTGAAACCTCAAAGG
A
Found at i:15520495 original size:132 final size:132
Alignment explanation
Indices: 15519967--15520606 Score: 456
Period size: 132 Copynumber: 4.9 Consensus size: 132
15519957 GTGAAATTCC
* ** * * * *
15519967 GAAGAGATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCATCACGATAGGGTACTATTCC
1 GAAGGGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
* * * * * * ** ** *
15520032 TCGAATTGCTAAACATCAAATATCGTCTTCGTTTTAAAGGGTTTTTAGAAA-ACGTGAGTGAAAT
66 GCGAATTGCCAAATATCGAATCTCGCCTTCGTTTTAAAGAATTTTTA-AAAGACACGAATGAAAT
15520096 -TT
130 CTT
* * * * * ** *
15520098 CGAAGGAATCTTCTATTGTTTTGAA-AAAAAGAGAAATCACAACCCAACACATTAGGGCACGATT
1 -GAAGGGATATTCGATTATTTTGAACAAACA-AGAAATTGCAACCCAACACGTTAGGGCACGATT
* ** * * * * * * * *
15520162 CC-AGAATTATCAAACA-CCAAGTATTGTCTTCGTTTTGGAAG-GTTTTTAATAA-ACACGAGTG
64 CCGCGAATTGCCAAATATCGAA-TCTCGCCTTCGTTTT-AAAGAATTTTTAA-AAGACACGAATG
* *
15520223 AAAGCCT
126 AAATCTT
* * * * ** * * *
15520230 AAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCATGAATCC
1 GAAGGGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
* * *** * ** * *
15520295 -CGGATTGTCAAACGCCGAATATTACCTTCGTTTTAAATG-ATTTTTAGAAGACATGAATGAAAT
66 GCGAATTGCCAAATATCGAATCTCGCCTTCGTTTTAAA-GAATTTTTAAAAGACACGAATGAAAT
*
15520358 TTT
130 CTT
* * *
15520361 GAAGGGATATTTGATTATTTT-AAGCAAACAAGAAATTGCAACCCAGCACGTTAGGGCACGATTT
1 GAAGGGATATTCGATTATTTTGAA-CAAACAAGAAATTGCAACCCAACACGTTAGGGCACGATTC
* * * *
15520425 CGTGAATTGCCAAATATCGCA-CATCGCCTTCGTTTTAAAGAATTTTTAAAAGGCACGAGTGAAA
65 CGCGAATTGCCAAATATCGAATC-TCGCCTTCGTTTTAAAGAATTTTTAAAAGACACGAATGAAA
15520489 TCTT
129 TCTT
** * **
15520493 GAAGGGATATTCGATTATTTTGAACAAACGCGAAATTGCAACCCAACACGTTAGGGTATTATTCC
1 GAAGGGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
* * *
15520558 GCGAGTTGCCAAATATCGAATCTCGTCTTCGTTTTAGAGAATTTTTAAA
66 GCGAATTGCCAAATATCGAATCTCGCCTTCGTTTTAAAGAATTTTTAAA
15520607 TGAGTACTTA
Statistics
Matches: 403, Mismatches: 90, Indels: 30
0.77 0.17 0.06
Matches are distributed among these distances:
130 10 0.02
131 190 0.47
132 200 0.50
133 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (132 bp):
GAAGGGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
GCGAATTGCCAAATATCGAATCTCGCCTTCGTTTTAAAGAATTTTTAAAAGACACGAATGAAATC
TT
Found at i:15532786 original size:22 final size:22
Alignment explanation
Indices: 15532758--15532799 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
15532748 AGTTACCTAA
15532758 ATCTCGTGATTATTATGGAAAC
1 ATCTCGTGATTATTATGGAAAC
* *
15532780 ATCTCGTGGTTATTGTGGAA
1 ATCTCGTGATTATTATGGAA
15532800 GCCGATTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (22 bp):
ATCTCGTGATTATTATGGAAAC
Found at i:15535030 original size:10 final size:10
Alignment explanation
Indices: 15535003--15535061 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
15534993 TTAAATTCTA
15535003 AAAGATAAAT
1 AAAGATAAAT
15535013 ACAA-ATAAAT
1 A-AAGATAAAT
*
15535023 AAAGATAATT
1 AAAGATAAAT
15535033 AAAGATAAAT
1 AAAGATAAAT
*
15535043 AAGGATAAAT
1 AAAGATAAAT
15535053 AAAGATAAA
1 AAAGATAAA
15535062 AGCTAAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.68, C:0.02, G:0.10, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:15543391 original size:53 final size:53
Alignment explanation
Indices: 15543300--15543405 Score: 178
Period size: 53 Copynumber: 2.0 Consensus size: 53
15543290 CTTTTCGAAA
15543300 AAAGAATAGTGGTGAGTGTTTGGAACCACTACTCGTAGACACGAGTCATGTGT
1 AAAGAATAGTGGTGAGTGTTTGGAACCACTACTCGTAGACACGAGTCATGTGT
* *
15543353 AAAGAATAGTGGTGAGTGTTTGGAATCAC-AGCTTGTAGACACGAGTCATGTGT
1 AAAGAATAGTGGTGAGTGTTTGGAACCACTA-CTCGTAGACACGAGTCATGTGT
15543406 CATTTTGGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
52 1 0.02
53 49 0.98
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.27
Consensus pattern (53 bp):
AAAGAATAGTGGTGAGTGTTTGGAACCACTACTCGTAGACACGAGTCATGTGT
Found at i:15545887 original size:32 final size:32
Alignment explanation
Indices: 15545846--15545912 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
15545836 AGGGCCCAAT
*
15545846 ACATGTTTTAGAAGTAATTCAGGATTAAACTG
1 ACATGTTTTAGAAGTAATTCAGGATGAAACTG
15545878 ACATGTTTTAGAAGTAATTCAGGATGAAACTG
1 ACATGTTTTAGAAGTAATTCAGGATGAAACTG
15545910 ACA
1 ACA
15545913 ACTTTGGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (32 bp):
ACATGTTTTAGAAGTAATTCAGGATGAAACTG
Found at i:15547879 original size:18 final size:17
Alignment explanation
Indices: 15547852--15547888 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
15547842 ATTCTTTATT
*
15547852 TTATTAATATATTATAA
1 TTATTAATATAATATAA
15547869 TTATATAATATAATATAA
1 TTAT-TAATATAATATAA
15547887 TT
1 TT
15547889 TACTTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTATTAATATAATATAA
Found at i:15555161 original size:25 final size:25
Alignment explanation
Indices: 15555113--15555164 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
15555103 GTGCCTTTCT
* *
15555113 TTTTCTTTATGCTTTATTTCTTTTA
1 TTTTCTTTATGCATTATTTATTTTA
* *
15555138 TTTTCTTTATTCATTCTTTATTTTA
1 TTTTCTTTATGCATTATTTATTTTA
15555163 TT
1 TT
15555165 AATATATTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.13, C:0.12, G:0.02, T:0.73
Consensus pattern (25 bp):
TTTTCTTTATGCATTATTTATTTTA
Found at i:15555187 original size:18 final size:17
Alignment explanation
Indices: 15555160--15555196 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
15555150 ATTCTTTATT
*
15555160 TTATTAATATATTATAA
1 TTATTAATATAATATAA
15555177 TTATATAATATAATATAA
1 TTAT-TAATATAATATAA
15555195 TT
1 TT
15555197 TACTTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTATTAATATAATATAA
Found at i:15558081 original size:7 final size:7
Alignment explanation
Indices: 15558071--15558095 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
15558061 TATTTTCTTA
15558071 GTTAGCC
1 GTTAGCC
15558078 GTTAGCC
1 GTTAGCC
15558085 GTTAGCC
1 GTTAGCC
15558092 GTTA
1 GTTA
15558096 ATTTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.24, G:0.28, T:0.32
Consensus pattern (7 bp):
GTTAGCC
Found at i:15558388 original size:143 final size:143
Alignment explanation
Indices: 15558130--15558419 Score: 463
Period size: 143 Copynumber: 2.0 Consensus size: 143
15558120 TATATCACCA
* * * * * * *
15558130 CTTCAAATCAACATATTTTCCATTACCAAATTTTTTAAATTTGTATTTCATAAATATTCTTTTTC
1 CTTCAAATCAACATAATTTCCATCACCAAAATGTTAAAATTTGCATTTCATAAATATTCTCTTTC
*
15558195 ACAGTACCTATGGATACGATAAATCGACATTACTTGTCACTTTATTACTTGATACGATTCTGTAC
66 ACAGTACCTATGGATACAATAAATCGACATTACTTGTCACTTTATTACTTGATACGATTCTGTAC
*
15558260 ACTTGCACATTTC
131 ACTTACACATTTC
*
15558273 CTTCAAATCAACATAATTTCCATCACCAAAATGTTAAAATTTGCATTTCTTAAATATTCTCTTTC
1 CTTCAAATCAACATAATTTCCATCACCAAAATGTTAAAATTTGCATTTCATAAATATTCTCTTTC
* * *
15558338 ACAGTCCCTATGGATACAATAACTCGACATTAGTTGTCACTTTATTACTTGATACGATTCTGTAC
66 ACAGTACCTATGGATACAATAAATCGACATTACTTGTCACTTTATTACTTGATACGATTCTGTAC
15558403 ACTTACACATTTC
131 ACTTACACATTTC
15558416 CTTC
1 CTTC
15558420 GTTCCAAGTT
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
143 134 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (143 bp):
CTTCAAATCAACATAATTTCCATCACCAAAATGTTAAAATTTGCATTTCATAAATATTCTCTTTC
ACAGTACCTATGGATACAATAAATCGACATTACTTGTCACTTTATTACTTGATACGATTCTGTAC
ACTTACACATTTC
Found at i:15561454 original size:26 final size:26
Alignment explanation
Indices: 15561423--15561530 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
15561413 TGAAATTCCC
*
15561423 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
15561449 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
15561475 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
15561501 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
15561527 ATCA
1 ATCA
15561531 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:15568431 original size:26 final size:26
Alignment explanation
Indices: 15568400--15568507 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
15568390 TGAAATTCCC
15568400 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
15568426 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
15568452 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
15568478 ATCATGGAACATTTACCT-AACCTATT
1 ATCATGGAACATTTACCTAAACC-ATT
15568504 ATCA
1 ATCA
15568508 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 3 0.04
26 73 0.96
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:15572228 original size:16 final size:16
Alignment explanation
Indices: 15572207--15572240 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
15572197 ACATTTAGTA
15572207 TAGCAATTGTGATCCT
1 TAGCAATTGTGATCCT
15572223 TAGCAATTGTGATCCT
1 TAGCAATTGTGATCCT
15572239 TA
1 TA
15572241 CTCTTTGGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (16 bp):
TAGCAATTGTGATCCT
Found at i:15572564 original size:25 final size:26
Alignment explanation
Indices: 15572536--15572596 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
15572526 TAGAAAATAA
*
15572536 TTAACATTAT-AAAAAATATTATTTC
1 TTAAAATTATAAAAAAATATTATTTC
15572561 TTAAAATTATAAAAAAATATTATTTC
1 TTAAAATTATAAAAAAATATTATTTC
15572587 TTAAAATTAT
1 TTAAAATTAT
15572597 TATTATTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 9 0.26
26 25 0.74
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (26 bp):
TTAAAATTATAAAAAAATATTATTTC
Found at i:15572796 original size:20 final size:21
Alignment explanation
Indices: 15572758--15572798 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
15572748 GTTCACATTA
*
15572758 CTGTTATTCGTATTATTGTAT
1 CTGTTATTCATATTATTGTAT
*
15572779 CTGTTATT-ATATTGTTGTAT
1 CTGTTATTCATATTATTGTAT
15572799 TAGAATCGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.20, C:0.07, G:0.15, T:0.59
Consensus pattern (21 bp):
CTGTTATTCATATTATTGTAT
Found at i:15573189 original size:26 final size:26
Alignment explanation
Indices: 15573160--15573267 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
15573150 TAGTACAAAT
15573160 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
15573186 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15573212 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15573238 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15573264 TGAT
1 TGAT
15573268 GAGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15576929 original size:15 final size:14
Alignment explanation
Indices: 15576902--15576978 Score: 57
Period size: 15 Copynumber: 5.4 Consensus size: 14
15576892 TTCTATTTAT
*
15576902 GTTTAGGGTTTTTG
1 GTTTAGGGATTTTG
*
15576916 AGTTTGGGGATTTTG
1 -GTTTAGGGATTTTG
*
15576931 GGTTAGGGATTTTTG
1 GTTTAGGGA-TTTTG
*
15576946 G-TTAGGGTTTTTG
1 GTTTAGGGATTTTG
* * *
15576959 ATTTTGGGGATTTTT
1 -GTTTAGGGATTTTG
15576974 GTTTA
1 GTTTA
15576979 TTATTTTCGA
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
13 5 0.10
14 16 0.33
15 27 0.56
ACGTcount: A:0.12, C:0.00, G:0.35, T:0.53
Consensus pattern (14 bp):
GTTTAGGGATTTTG
Found at i:15576941 original size:14 final size:14
Alignment explanation
Indices: 15576922--15576958 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
15576912 TTTGAGTTTG
15576922 GGGATTTTGGGTTA
1 GGGATTTTGGGTTA
*
15576936 GGGATTTTTGGTTA
1 GGGATTTTGGGTTA
*
15576950 GGGTTTTTG
1 GGGATTTTG
15576959 ATTTTGGGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.41, T:0.49
Consensus pattern (14 bp):
GGGATTTTGGGTTA
Found at i:15579061 original size:31 final size:31
Alignment explanation
Indices: 15579013--15579073 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
15579003 GGTAAATAAT
*
15579013 GCTATTTATTTTTCACCAATTTATTACTGAC
1 GCTATTTATTTTGCACCAATTTATTACTGAC
*
15579044 GCTATTTGTTTTGCACCAATTTATTACTGA
1 GCTATTTATTTTGCACCAATTTATTACTGA
15579074 TGTTTTACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.10, T:0.48
Consensus pattern (31 bp):
GCTATTTATTTTGCACCAATTTATTACTGAC
Found at i:15584399 original size:133 final size:133
Alignment explanation
Indices: 15584076--15584382 Score: 436
Period size: 133 Copynumber: 2.3 Consensus size: 133
15584066 ATTGGCTATC
15584076 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACATT-TGGCTTAAATCTGCTCCATTATCG
1 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAC-TTGTGGCTTAAATCTGCTCCATTATCG
* * * ** * *
15584140 CTACATGGATATAAAATTCGCTGCCTTTGATCTGCTCCACTACTGCTTAGGGAGATATGATCTGC
65 ATACATAGAGATAAAATTCGCCACCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC
15584205 AATT
130 AATT
* * * * *
15584209 TTCAGTCTGCTCCACTGCAACTTCAGGGAGACAAGGCTGGTGGCTTAGATCTGCTCCATTGTCGA
1 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGGCTTAAATCTGCTCCATTATCGA
* *
15584274 TACATAGAGATAATATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCA
66 TACATAGAGATAAAATTCGCCACCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCA
15584339 ATT
131 ATT
* * * *
15584342 TTTAGTCTGCTCCACTTCAACTTTAGGGAGATAATACTTGT
1 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
15584383 ATCTCAAACT
Statistics
Matches: 152, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
132 1 0.01
133 151 0.99
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (133 bp):
TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGGCTTAAATCTGCTCCATTATCGA
TACATAGAGATAAAATTCGCCACCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCA
ATT
Found at i:15594943 original size:27 final size:27
Alignment explanation
Indices: 15594905--15594957 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
15594895 TCACTTTATT
15594905 AAGAAATTCGTTCTCCATGACAAGCTC
1 AAGAAATTCGTTCTCCATGACAAGCTC
*
15594932 AAGAAATTCGTTCTCCATGATAAGCT
1 AAGAAATTCGTTCTCCATGACAAGCT
15594958 TTCTAATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (27 bp):
AAGAAATTCGTTCTCCATGACAAGCTC
Found at i:15596880 original size:35 final size:35
Alignment explanation
Indices: 15596841--15596910 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
15596831 AAGGAGTAAA
15596841 TTATATGAATT-AAAAAAAAGAAAAATACATAATGT
1 TTATATGAATTAAAAAAAAAG-AAAATACATAATGT
15596876 TTATATGAATTAAAAAAAAAGAAAATACATAATGT
1 TTATATGAATTAAAAAAAAAGAAAATACATAATGT
15596911 AATAGGCCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
35 25 0.74
36 9 0.26
ACGTcount: A:0.60, C:0.03, G:0.09, T:0.29
Consensus pattern (35 bp):
TTATATGAATTAAAAAAAAAGAAAATACATAATGT
Found at i:15598260 original size:24 final size:26
Alignment explanation
Indices: 15598215--15598266 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 26
15598205 TTTTATTTTA
* *
15598215 TTATATATTTATTTATTTTAAT-ATT
1 TTATATATGTATTTATTCTAATCATT
15598240 TTATATA-GTATTTATTCTAATCATT
1 TTATATATGTATTTATTCTAATCATT
15598265 TT
1 TT
15598267 GCTCCTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 12 0.50
25 12 0.50
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (26 bp):
TTATATATGTATTTATTCTAATCATT
Found at i:15598315 original size:15 final size:15
Alignment explanation
Indices: 15598295--15598325 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15598285 CATTATGGGG
*
15598295 TTTTATTATATATTA
1 TTTTATCATATATTA
15598310 TTTTATCATATATTA
1 TTTTATCATATATTA
15598325 T
1 T
15598326 CTAATATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTATCATATATTA
Found at i:15603927 original size:24 final size:24
Alignment explanation
Indices: 15603890--15603940 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
15603880 TAGAAAGATT
*
15603890 AGAACAGATGCAAAAAG-AAATGCA
1 AGAACAGATAC-AAAAGCAAATGCA
* *
15603914 AGAACAGTTACAAATGCAAATGCA
1 AGAACAGATACAAAAGCAAATGCA
15603938 AGA
1 AGA
15603941 GCAACTAGCG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.55, C:0.14, G:0.20, T:0.12
Consensus pattern (24 bp):
AGAACAGATACAAAAGCAAATGCA
Found at i:15611559 original size:45 final size:46
Alignment explanation
Indices: 15611353--15611563 Score: 125
Period size: 45 Copynumber: 4.7 Consensus size: 46
15611343 GAATTCACAG
* * * * * *
15611353 ATCTTATCTCCATGAGGTAGCAATGAAGCAAATCGAAGACG-GTGA
1 ATCTTATCTCCCTAAGGTAGCAAGGGAGCAGATCGAAGACGACTGA
** *
15611398 ATCTTATCTCCCTAAGGTAGCAAGGGAGCAGATTTAAG-CCACT-A
1 ATCTTATCTCCCTAAGGTAGCAAGGGAGCAGATCGAAGACGACTGA
** * * * * * *
15611442 GCCTTGTATCCCTAA-GCAG-TAGTGGAGCAGA-CTAA-A-GATTGTA
1 ATCTTATCTCCCTAAGGTAGCAAG-GGAGCAGATCGAAGACGACTG-A
* * * * *
15611485 GATCTTATCTCCATGAGGTAGCGATGGAGCAGATCGAAGATGA-TGA
1 -ATCTTATCTCCCTAAGGTAGCAAGGGAGCAGATCGAAGACGACTGA
*
15611531 ATCTTATCTCCCTAAGGCAGCAAGGGAGCAGAT
1 ATCTTATCTCCCTAAGGTAGCAAGGGAGCAGAT
15611564 TCAAGCCACC
Statistics
Matches: 122, Mismatches: 33, Indels: 22
0.69 0.19 0.12
Matches are distributed among these distances:
41 2 0.02
42 5 0.04
43 12 0.10
44 22 0.18
45 71 0.58
46 5 0.04
47 3 0.02
48 2 0.02
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (46 bp):
ATCTTATCTCCCTAAGGTAGCAAGGGAGCAGATCGAAGACGACTGA
Found at i:15611646 original size:132 final size:131
Alignment explanation
Indices: 15611351--15611761 Score: 506
Period size: 133 Copynumber: 3.1 Consensus size: 131
15611341 GTGAATTCAC
* * *
15611351 AGATCTTATCTCCATGAGGTAGCAATGAAGCAAATCGAAGACGGTGAATCTTATCTCCCTAAGGT
1 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGATGAATCTTATCTCCCTAAGGT
* * *
15611416 AGCAAGGGAGCAGATTTAAGCCACTAGCCTTGTATCCCTAAGCAGTAGTGGAGCAGACT-AAAGA
66 AGCAAGGGAGCAGATTTAAGCCACTAGCCTTCT-T-CCTAAGCAGAAGTGGAGCAGGCTGAAA-A
15611480 TTGT
128 TTGT
* * *
15611484 AGATCTTATCTCCATGAGGTAGCGATGGAGCAGATCGAAGATGATGAATCTTATCTCCCTAAGGC
1 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGATGAATCTTATCTCCCTAAGGT
* * * * *
15611549 AGCAAGGGAGCAGATTCAAGCCACCATCCTATCTTCCTAAGCAGCAGTGGAGTAGGCTGAAAATT
66 AGCAAGGGAGCAGATTTAAGCCACTAGCCT-TCTTCCTAAGCAGAAGTGGAGCAGGCTGAAAATT
15611614 GT
130 GT
* **
15611616 AGATCTTATCTCCATGAGGTAGCAATGGAGCCGATCG-AGAACGACAAATCTTATCTTCCC-AAG
1 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAG-ACGATGAATCTTATC-TCCCTAAG
* * * *
15611679 GTAG-TAGGGAAGCAGATTTAAGCCACTAGCCTTGTCTCCCTGAGCAGAAGTGGAACAGGCTGAA
64 GTAGCAAGGG-AGCAGATTTAAGCCACTAGCC-T-TCTTCCTAAGCAGAAGTGGAGCAGGCTGAA
*
15611743 GATTGT
126 AATTGT
*
15611749 AGATCCTATCTCC
1 AGATCTTATCTCC
15611762 CTAAGCAGTA
Statistics
Matches: 241, Mismatches: 31, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
131 6 0.02
132 96 0.40
133 137 0.57
134 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (131 bp):
AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGATGAATCTTATCTCCCTAAGGT
AGCAAGGGAGCAGATTTAAGCCACTAGCCTTCTTCCTAAGCAGAAGTGGAGCAGGCTGAAAATTG
T
Found at i:15611819 original size:132 final size:131
Alignment explanation
Indices: 15611396--15611878 Score: 460
Period size: 132 Copynumber: 3.6 Consensus size: 131
15611386 CGAAGACGGT
* *
15611396 GAATCTTATCTCCCTAAGGTAGCAAGGGAGCAGATTTAAGCCACTAGCCTTGTATCCCTAAGCAG
1 GAATCTTATCTCCCTAAGGTAGCAAGGGAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGCAG
* * *
15611461 TAGTGGAGCAGACTAAAGATTGTAGATCTTATCTCCATGAG-GTAGCGATGGAGCAGATCGAAGA
66 CAGTGGAGCAGACTGAAGATTGTAGATCTTATCTCCATAAGAGTA--G-TGGAGCAGATC-AAGA
*
15611525 T-GAT
127 TAGAC
* * * * *
15611529 GAATCTTATCTCCCTAAGGCAGCAAGGGAGCAGATTCAAGCCACCATCC-TATCTTCCTAAGCAG
1 GAATCTTATCTCCCTAAGGTAGCAAGGGAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGCAG
* * * * * *
15611593 CAGTGGAGTAGGCTGAAAATTGTAGATCTTATCTCCATGAG-GTAGCAATGGAGCCGATCGAGA-
66 CAGTGGAGCAGACTGAAGATTGTAGATCTTATCTCCATAAGAGTAG---TGGAGCAGATCAAGAT
15611656 ACGAC
128 A-GAC
* * * *
15611661 AAATCTTATCTTCCC-AAGGTAG-TAGGGAAGCAGATTTAAGCCACTAGCCTTGTCTCCCTGAGC
1 GAATCTTATC-TCCCTAAGGTAGCAAGGG-AGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGC
* * * * * *
15611724 AGAAGTGGAACAGGCTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAACAGATCAAAGA
64 AGCAGTGGAGCAGACTGAAGATTGTAGATCTTATCTCCATAAG-AGTAGTGGAGCAGATC-AAGA
15611789 TAG-C
127 TAGAC
* * * * * * * * * *
15611793 GAATCTTATCTTCCTAAGATAGTAGGGGAGTAGATTGAAACCACAAGTCTTATCTCCCTGAAGCT
1 GAATCTTATCTCCCTAAGGTAGCAAGGGAGCAGATTTAAGCCACTAGCCTTATCTCCCT-AAGCA
15611858 GCAGTGGAGCAGACTGAAGAT
65 GCAGTGGAGCAGACTGAAGAT
15611879 AACAGATCTC
Statistics
Matches: 286, Mismatches: 50, Indels: 28
0.79 0.14 0.08
Matches are distributed among these distances:
130 1 0.00
131 10 0.03
132 147 0.51
133 123 0.43
134 1 0.00
135 4 0.01
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (131 bp):
GAATCTTATCTCCCTAAGGTAGCAAGGGAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGCAG
CAGTGGAGCAGACTGAAGATTGTAGATCTTATCTCCATAAGAGTAGTGGAGCAGATCAAGATAGA
C
Found at i:15613608 original size:15 final size:15
Alignment explanation
Indices: 15613588--15613618 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15613578 CATTACAGGG
*
15613588 TTTTATTATATATTA
1 TTTTATCATATATTA
15613603 TTTTATCATATATTA
1 TTTTATCATATATTA
15613618 T
1 T
15613619 CTAATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTATCATATATTA
Found at i:15617884 original size:69 final size:70
Alignment explanation
Indices: 15617768--15617912 Score: 265
Period size: 69 Copynumber: 2.1 Consensus size: 70
15617758 GGGCTGGAAG
*
15617768 AAAGAAAAGTAAAAAAAAGCATGATACTTTTTAGACCAACATAAAACCAAGTATGGCCGAAGACT
1 AAAGAAAAGTAAAAAAAAGCATGATACTTTTTAGACCAACATAAAACCAAGTATGGCCGAAAACT
15617833 TTGAC
66 TTGAC
*
15617838 AAAGAAAAGT-AAAAAAAGCATGATACTTTTTAGACCAACATCAAACCAAGTATGGCCGAAAACT
1 AAAGAAAAGTAAAAAAAAGCATGATACTTTTTAGACCAACATAAAACCAAGTATGGCCGAAAACT
15617902 TTGAC
66 TTGAC
15617907 AAAGAA
1 AAAGAA
15617913 CATCGAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
69 63 0.86
70 10 0.14
ACGTcount: A:0.50, C:0.16, G:0.15, T:0.19
Consensus pattern (70 bp):
AAAGAAAAGTAAAAAAAAGCATGATACTTTTTAGACCAACATAAAACCAAGTATGGCCGAAAACT
TTGAC
Found at i:15617931 original size:13 final size:13
Alignment explanation
Indices: 15617913--15617940 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
15617903 TGACAAAGAA
15617913 CATCGAGATTTTC
1 CATCGAGATTTTC
15617926 CATCGAGATTTTC
1 CATCGAGATTTTC
15617939 CA
1 CA
15617941 CTTTAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (13 bp):
CATCGAGATTTTC
Found at i:15618621 original size:35 final size:37
Alignment explanation
Indices: 15618553--15618623 Score: 101
Period size: 35 Copynumber: 2.0 Consensus size: 37
15618543 CTTTAACCTT
15618553 TTTTATTTATTTTACTAGTTTATATTAAATTATTTTG
1 TTTTATTTATTTTACTAGTTTATATTAAATTATTTTG
* **
15618590 TTTTATTTA-TTTATTA-TTTATATTAGGTTATTTT
1 TTTTATTTATTTTACTAGTTTATATTAAATTATTTT
15618624 ATTATATACA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 16 0.52
36 6 0.19
37 9 0.29
ACGTcount: A:0.25, C:0.01, G:0.06, T:0.68
Consensus pattern (37 bp):
TTTTATTTATTTTACTAGTTTATATTAAATTATTTTG
Found at i:15618874 original size:21 final size:20
Alignment explanation
Indices: 15618848--15618901 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 20
15618838 TTTCGTTAGT
*
15618848 TTTTTTTATATCATT-TATTTA
1 TTTTTTTATAT-ATTCT-TATA
15618869 TTTTTTATATATATTCTTATA
1 TTTTTT-TATATATTCTTATA
15618890 TTATTTTTATAT
1 TT-TTTTTATAT
15618902 TCAATTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 19 0.66
22 10 0.34
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTTTTATATATTCTTATA
Found at i:15618883 original size:13 final size:11
Alignment explanation
Indices: 15618861--15618902 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
15618851 TTTTATATCA
15618861 TTTAT-TTATTT
1 TTTATATTA-TT
15618872 TTTATATATATT
1 TTTATAT-TATT
*
15618884 CTTATATTATT
1 TTTATATTATT
15618895 TTTATATT
1 TTTATATT
15618903 CAATTTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 16 0.59
12 9 0.33
13 2 0.07
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTATATTATT
Found at i:15621221 original size:26 final size:26
Alignment explanation
Indices: 15621184--15621267 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
15621174 TGATACAAAT
* *
15621184 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15621210 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15621236 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15621262 TGATAA
1 TGATAA
15621268 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:15622749 original size:27 final size:26
Alignment explanation
Indices: 15622708--15622782 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 26
15622698 AAAAGTAGCT
* *
15622708 AAATTACTATAATACCCCTATGTATGA
1 AAATTACTATTATACCCCTAGGTAT-A
*
15622735 AAATTACTATTATACCCCTAGGTGTA
1 AAATTACTATTATACCCCTAGGTATA
**
15622761 AAATTACCGTTATACCCCTAGG
1 AAATTACTATTATACCCCTAGG
15622783 GTTAATTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 21 0.49
27 22 0.51
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (26 bp):
AAATTACTATTATACCCCTAGGTATA
Found at i:15622979 original size:28 final size:26
Alignment explanation
Indices: 15622883--15622997 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
15622873 TGGAGGAAGC
* *
15622883 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
** *
15622910 AATATGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
15622937 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* *
15622964 GTATCTGGTGACTCTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
15622991 GTTCTGG
1 GTTCTGG
15622998 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.69
28 17 0.23
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:15622990 original size:54 final size:54
Alignment explanation
Indices: 15622883--15622997 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
15622873 TGGAGGAAGC
*
15622883 GTTCTGGTGGCTATGCCACAAATATCTAATATGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTAATATGGTGACTCTGCCACATATATCT
* * * * * *
15622937 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCT-AATATGGTGACTCTGCCACATATATCT
15622991 GTTCTGG
1 GTTCTGG
15622998 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 36 0.68
55 17 0.32
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTAATATGGTGACTCTGCCACATATATCT
Found at i:15624525 original size:10 final size:10
Alignment explanation
Indices: 15624505--15624578 Score: 50
Period size: 11 Copynumber: 7.4 Consensus size: 10
15624495 TACAAACTTA
15624505 TAAAAATTAT
1 TAAAAATTAT
15624515 TCAAAAA-TAT
1 T-AAAAATTAT
15624525 T-AAAATTGAT
1 TAAAAATT-AT
*
15624535 ATAAACA-TA-
1 -TAAAAATTAT
15624544 T-AAAATTAT
1 TAAAAATTAT
*
15624553 AAAAAATTAT
1 TAAAAATTAT
15624563 TAAAAAATTAT
1 T-AAAAATTAT
15624574 CTAAA
1 -TAAA
15624579 CATAGTTAGG
Statistics
Matches: 50, Mismatches: 4, Indels: 19
0.68 0.05 0.26
Matches are distributed among these distances:
7 3 0.06
8 7 0.14
9 1 0.02
10 16 0.32
11 19 0.38
12 4 0.08
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:15624529 original size:19 final size:18
Alignment explanation
Indices: 15624507--15624567 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 18
15624497 CAAACTTATA
15624507 AAAATTATTCAAAAATATT
1 AAAATTATT-AAAAATATT
*
15624526 AAAATTGATATAAACATA-T
1 AAAATT-AT-TAAAAATATT
*
15624545 AAAATTATAAAAAATTATT
1 AAAATTATTAAAAA-TATT
15624564 AAAA
1 AAAA
15624568 AATTATCTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
17 4 0.11
18 4 0.11
19 18 0.51
20 8 0.23
21 1 0.03
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (18 bp):
AAAATTATTAAAAATATT
Found at i:15624578 original size:12 final size:11
Alignment explanation
Indices: 15624545--15624578 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
15624535 ATAAACATAT
15624545 AAAATTA-TAA
1 AAAATTATTAA
15624555 AAAATTATTAA
1 AAAATTATTAA
15624566 AAAATTATCTAA
1 AAAATTAT-TAA
15624578 A
1 A
15624579 CATAGTTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 7 0.32
11 11 0.50
12 4 0.18
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATTATTAA
Done.