Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 67 of 444
Found at i:15870104 original size:16 final size:16
Alignment explanation
Indices: 15870083--15870133 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
15870073 TGAATTACTG
15870083 ATTACAGGCCTATTCC
1 ATTACAGGCCTATTCC
15870099 ATTACA-GCTCTATTCC
1 ATTACAGGC-CTATTCC
*
15870115 ATTACAGCCCTATTCC
1 ATTACAGGCCTATTCC
15870131 ATT
1 ATT
15870134 CCAATGAACC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
15 2 0.06
16 29 0.91
17 1 0.03
ACGTcount: A:0.25, C:0.31, G:0.08, T:0.35
Consensus pattern (16 bp):
ATTACAGGCCTATTCC
Found at i:15874106 original size:21 final size:20
Alignment explanation
Indices: 15874074--15874114 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
15874064 AACCGATAAT
15874074 TTAGGAAATTTTCAAAAAAC
1 TTAGGAAATTTTCAAAAAAC
* *
15874094 TTAGTAAAGTTTTCCAAAAAC
1 TTAGGAAA-TTTTCAAAAAAC
15874115 AGGGGACACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.32
Consensus pattern (20 bp):
TTAGGAAATTTTCAAAAAAC
Found at i:15876763 original size:20 final size:21
Alignment explanation
Indices: 15876729--15876782 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
15876719 TGATGATATT
*
15876729 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
15876750 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
15876770 TTTTATTATTTTA
1 TTATATTATTTTA
15876783 TTATTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:15876788 original size:11 final size:11
Alignment explanation
Indices: 15876772--15876806 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
15876762 ATGAGATATT
15876772 TTATTATTTTA
1 TTATTATTTTA
*
15876783 TTATTATTTCA
1 TTATTATTTTA
15876794 TTATTATTTTA
1 TTATTATTTTA
15876805 TT
1 TT
15876807 CTTAATTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:15878939 original size:46 final size:46
Alignment explanation
Indices: 15878887--15879068 Score: 222
Period size: 46 Copynumber: 4.0 Consensus size: 46
15878877 AGTGTGCTCT
*
15878887 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
15878933 CTGATATGAAATGTGTAAAACCATGGTTGAAGGATATCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
15878979 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
15879025 ATGACA-GAAAATGAGTAAGGCCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
15879069 TCATGCCAAA
Statistics
Matches: 117, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
45 1 0.01
46 116 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:15879372 original size:16 final size:17
Alignment explanation
Indices: 15879351--15879383 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15879341 ATGATGAAGC
*
15879351 ATGAAAT-ATTGATATA
1 ATGAAATGAGTGATATA
15879367 ATGAAATGAGTGATATA
1 ATGAAATGAGTGATATA
15879384 TGCTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.33
Consensus pattern (17 bp):
ATGAAATGAGTGATATA
Found at i:15880701 original size:11 final size:12
Alignment explanation
Indices: 15880679--15880707 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
15880669 GCCCGCATTA
15880679 ATTTTTTATATT
1 ATTTTTTATATT
15880691 ATTTTTT-TATT
1 ATTTTTTATATT
15880702 ATTTTT
1 ATTTTT
15880708 AAATATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
ATTTTTTATATT
Found at i:15880864 original size:30 final size:30
Alignment explanation
Indices: 15880830--15880892 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
15880820 ACTTAAGAAG
15880830 CAAATG-CTTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTT-TAAAATAATAAAAAAATTAA
*
15880860 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
15880890 CAA
1 CAA
15880893 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.90
31 3 0.10
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAAAAAATTAA
Found at i:15883771 original size:47 final size:48
Alignment explanation
Indices: 15883655--15883786 Score: 185
Period size: 47 Copynumber: 2.8 Consensus size: 48
15883645 GTGCGAGTGA
* * * *
15883655 TACCTTGATTTGGCTACCGGCCATGGCATAGGTATTTCAGGGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCAGGGAGAAGT
* *
15883703 TACCTTGATTTGGCTACGGGCCACGGTATAGGTACTTC-GGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCAGGGAGAAGT
* *
15883750 TACCTTGAGTTGGCTATGGGCCATGGTATAGGTACTT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTT
15883787 ATCGGATAAG
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 41 0.55
48 34 0.45
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.31
Consensus pattern (48 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCAGGGAGAAGT
Found at i:15886147 original size:136 final size:137
Alignment explanation
Indices: 15885901--15886186 Score: 513
Period size: 136 Copynumber: 2.1 Consensus size: 137
15885891 TATTGGGCCT
**
15885901 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTTACAATAAACTGGGCCT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTTACAATAAACTGGGCCT
*
15885966 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAA
66 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-A
15886031 ACATATGC
130 ACATATGC
*
15886039 AAGCCCATTTGGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCA-A-TTACAATAAACTGGGCCT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTTACAATAAACTGGGCCT
15886102 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
66 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
15886167 CATATGC
131 CATATGC
15886174 AAGCCCATTTGGG
1 AAGCCCATTTGGG
15886187 GAGACTACTC
Statistics
Matches: 144, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
135 22 0.15
136 80 0.56
137 1 0.01
138 41 0.28
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTTACAATAAACTGGGCCT
TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
CATATGC
Found at i:15888003 original size:26 final size:26
Alignment explanation
Indices: 15887967--15888127 Score: 281
Period size: 26 Copynumber: 6.2 Consensus size: 26
15887957 CATGAAATTC
15887967 TTATCATGAAACATTTACCTAACACA
1 TTATCATGAAACATTTACCTAACACA
15887993 TTATCATGAAACATTTACCTAACACA
1 TTATCATGAAACATTTACCTAACACA
* *
15888019 TTATCATAAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACACA
15888045 TTATCATGAAACATTTACCTAAC-CA
1 TTATCATGAAACATTTACCTAACACA
15888070 TTATCATGAAACATTTACCTAACACA
1 TTATCATGAAACATTTACCTAACACA
15888096 TTATCATGAAACATTTACCTAAC-CTA
1 TTATCATGAAACATTTACCTAACAC-A
15888122 TTATCA
1 TTATCA
15888128 ATTTGTATCA
Statistics
Matches: 130, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
25 26 0.20
26 104 0.80
ACGTcount: A:0.41, C:0.24, G:0.03, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACACA
Found at i:15888095 original size:77 final size:78
Alignment explanation
Indices: 15887967--15888127 Score: 297
Period size: 77 Copynumber: 2.1 Consensus size: 78
15887957 CATGAAATTC
15887967 TTATCATGAAACATTTACCTAACACATTATCATGAAACATTTACCTAACACATTATCATAAAACA
1 TTATCATGAAACATTTACCTAACACATTATCATGAAACATTTACCTAACACATTATCATAAAACA
15888032 TTTACCTAACCCA
66 TTTACCTAACCCA
*
15888045 TTATCATGAAACATTTACCTAAC-CATTATCATGAAACATTTACCTAACACATTATCATGAAACA
1 TTATCATGAAACATTTACCTAACACATTATCATGAAACATTTACCTAACACATTATCATAAAACA
*
15888109 TTTACCTAACCTA
66 TTTACCTAACCCA
15888122 TTATCA
1 TTATCA
15888128 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
77 58 0.72
78 23 0.28
ACGTcount: A:0.41, C:0.24, G:0.03, T:0.32
Consensus pattern (78 bp):
TTATCATGAAACATTTACCTAACACATTATCATGAAACATTTACCTAACACATTATCATAAAACA
TTTACCTAACCCA
Found at i:15888735 original size:20 final size:22
Alignment explanation
Indices: 15888710--15888749 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15888700 TGGCATGCAT
*
15888710 GATATT-AAA-TTTGATTTTAG
1 GATATTGAAACTTGGATTTTAG
15888730 GATATTGAAACTTGGATTTT
1 GATATTGAAACTTGGATTTT
15888750 GAATTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 3 0.18
22 8 0.47
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (22 bp):
GATATTGAAACTTGGATTTTAG
Found at i:15889084 original size:30 final size:30
Alignment explanation
Indices: 15889050--15889109 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
15889040 TAGGCTGGGT
15889050 TTGGGTGGTTACAATATTTATATAAACTAA
1 TTGGGTGGTTACAATATTTATATAAACTAA
15889080 TTGGGTGGTTACAATATTTATATAAACTAA
1 TTGGGTGGTTACAATATTTATATAAACTAA
15889110 CTTATTCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.40
Consensus pattern (30 bp):
TTGGGTGGTTACAATATTTATATAAACTAA
Found at i:15889320 original size:64 final size:64
Alignment explanation
Indices: 15889218--15889354 Score: 188
Period size: 64 Copynumber: 2.2 Consensus size: 64
15889208 TTAACTGCTG
**
15889218 AATTTGTA-TTAGATAATGCAATTATTTAAGTTTATTTTTTTATC-AAATTAATATTTAAATACT
1 AATTTGTATTTAGATAATGCAATTATTTAACATTATTTTTTT-TCTAAATTAATATTTAAATACT
* * * *
15889281 AATTTATATTTAGATATTGTAATTATTTAACATTATTTTTTTTCTAAATTAATATTTAGATACT
1 AATTTGTATTTAGATAATGCAATTATTTAACATTATTTTTTTTCTAAATTAATATTTAAATACT
*
15889345 AGTTTGTATT
1 AATTTGTATT
15889355 AATTTACTAA
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
63 9 0.14
64 55 0.86
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.53
Consensus pattern (64 bp):
AATTTGTATTTAGATAATGCAATTATTTAACATTATTTTTTTTCTAAATTAATATTTAAATACT
Found at i:15889496 original size:29 final size:30
Alignment explanation
Indices: 15889449--15889506 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
15889439 TTGATTTAAT
* *
15889449 GTGCAATTGTATACATG-AACTTTAATTTG
1 GTGCAATTATACACATGAAACTTTAATTTG
*
15889478 GTGCAATTATACACGTGAAACTTTAATTT
1 GTGCAATTATACACATGAAACTTTAATTT
15889507 CTATTTAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.40
Consensus pattern (30 bp):
GTGCAATTATACACATGAAACTTTAATTTG
Found at i:15889617 original size:23 final size:23
Alignment explanation
Indices: 15889568--15889617 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
15889558 TTGGATAAAT
**
15889568 ATAATTATTTATGTATGCAATTT
1 ATAATTATTTATGTATGCAATAA
*
15889591 ATAATTATTTATGTATGTAATAA
1 ATAATTATTTATGTATGCAATAA
15889614 ATAA
1 ATAA
15889618 ATATAAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (23 bp):
ATAATTATTTATGTATGCAATAA
Found at i:15892684 original size:21 final size:21
Alignment explanation
Indices: 15892660--15892699 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15892650 CATTTTAAAA
15892660 TTATGTATATATATATTTTCT
1 TTATGTATATATATATTTTCT
* *
15892681 TTATTTTTATATATATTTT
1 TTATGTATATATATATTTT
15892700 TACATTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.68
Consensus pattern (21 bp):
TTATGTATATATATATTTTCT
Found at i:15892709 original size:21 final size:21
Alignment explanation
Indices: 15892667--15892708 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
15892657 AAATTATGTA
**
15892667 TATATATATTTTCTTTATTTT
1 TATATATATTTTCTACATTTT
15892688 TATATATATTTT-TACATTTT
1 TATATATATTTTCTACATTTT
15892708 T
1 T
15892709 TTAAAGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (21 bp):
TATATATATTTTCTACATTTT
Found at i:15893814 original size:21 final size:22
Alignment explanation
Indices: 15893772--15893814 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
15893762 TAAACGAAGT
* *
15893772 ACAATATTATTTAACTACATAA
1 ACAATATAATTTAACTAAATAA
15893794 ACAATATAATTT-ACTAAATAA
1 ACAATATAATTTAACTAAATAA
15893815 TTACATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (22 bp):
ACAATATAATTTAACTAAATAA
Found at i:15895836 original size:26 final size:26
Alignment explanation
Indices: 15895800--15895909 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
15895790 TGATACAAAT
15895800 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
15895826 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
15895852 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
15895878 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
15895904 TGATAA
1 TGATAA
15895910 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:15901672 original size:25 final size:25
Alignment explanation
Indices: 15901633--15901739 Score: 180
Period size: 25 Copynumber: 4.2 Consensus size: 25
15901623 TGATACAAAT
*
15901633 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
15901659 TGATAAT-GGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
15901683 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
15901708 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
15901734 TGATAA
1 TGATAA
15901740 GAATTTCATG
Statistics
Matches: 79, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
24 9 0.11
25 53 0.67
26 17 0.22
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:15913671 original size:146 final size:145
Alignment explanation
Indices: 15913407--15913682 Score: 349
Period size: 146 Copynumber: 1.9 Consensus size: 145
15913397 TTTGGGTACT
*
15913407 CTGAGGTATCTTTAATTCATGTTTTCAAAAATCAATTCATATTACGAGAAATGAGTTGAGCCTCA
1 CTGAGGTATCTTTAATTCATGTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCA
* * * * * ** *
15913472 GGTCACACGCTGAGGTATTTTTAGTTTATGTTTCAAAAAATTGACTCATATTGCGAGAGGTGAGT
66 AG-CACACGCTGAGGTAATTTCAATTTATGCTTCAAAAAATCAACTCATATTGCGAGAAGTGAGT
15913537 CAAGCCTCAGGTCACG
130 CAAGCCTCAGGTCACG
* * * * * **
15913553 CTGAGGTGTTTTTAATTCCTGTTGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
1 CTGAGGTATCTTTAATTCATG-T-TTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCT
*
15913618 CAAG-ACACGTTGA-GTAATTTCAATTTATGCTTCAAAAAAATCAACTCATATTGCGAGAAGTGA
64 CAAGCACACGCTGAGGTAATTTCAATTTATGCTTC-AAAAAATCAACTCATATTGCGAGAAGTGA
15913681 GT
128 GT
15913683 TGAGCCTCGG
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
145 16 0.15
146 54 0.49
147 1 0.01
148 39 0.35
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (145 bp):
CTGAGGTATCTTTAATTCATGTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCA
AGCACACGCTGAGGTAATTTCAATTTATGCTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTC
AAGCCTCAGGTCACG
Found at i:15913682 original size:72 final size:72
Alignment explanation
Indices: 15913407--15913710 Score: 299
Period size: 74 Copynumber: 4.2 Consensus size: 72
15913397 TTTGGGTACT
* * * * *
15913407 CTGAGGTATCTTTAATTCATGTTTTC-AAAAATCAATTCATATTACGAGAAATGAGTTGAGCCTC
1 CTGAGGTATTTTTAATTTATG-TTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC
15913471 AGGTCACACG
65 AGG--ACACG
* ** * **
15913481 CTGAGGTATTTTTAGTTTATGTTTCAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCA
1 CTGAGGTATTTTTAATTTATGTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA
*
15913546 GGTCACG
66 GGACACG
* * * *
15913553 CTGAGGTGTTTTTAATTCCTGTTGTTTC-AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCC
1 CTGAGGTATTTTTAATT--T-ATGTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCC
*
15913617 TCAAGACACG
63 TCAGGACACG
* * * *
15913627 TTGA-GTAATTTCAATTTATGCTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC
1 CTGAGGTATTTTTAATTTATGTTTC-AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC
* *
15913691 GGGGCACG
65 AGGACACG
* *
15913699 CCGAGATATTTT
1 CTGAGGTATTTT
15913711 CAAATTCTCT
Statistics
Matches: 186, Mismatches: 37, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
70 5 0.03
71 1 0.01
72 62 0.33
73 18 0.10
74 94 0.51
75 6 0.03
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (72 bp):
CTGAGGTATTTTTAATTTATGTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA
GGACACG
Found at i:15913724 original size:146 final size:147
Alignment explanation
Indices: 15913429--15913728 Score: 338
Period size: 146 Copynumber: 2.0 Consensus size: 147
15913419 TAATTCATGT
* * * *
15913429 TTTCAAAAATCAATTCATATTACGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTT
1 TTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAG-CACACGCTGAGGTAATTTC
* * ** * * * *
15913494 AGTTTATGTTTCAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGG
65 AATTTATGCTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTCAAGCCTCAGGGCACGCCGAGA
* * *
15913559 TGTTTTTAATTCCTGTTG
130 TATTTTAAATTCCTCTTG
* * ** *
15913577 TTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGTTGA-GTAATTTCA
1 TTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGCACACGCTGAGGTAATTTCA
** *
15913640 ATTTATGCTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGA
66 ATTTATGCTTC-AAAAAATCAACTCATATTGCGAGAAGTGAGTCAAGCCTCAGGGCACGCCGAGA
15913705 TATTTTCAAATT-CTCTTG
130 TATTTT-AAATTCCTCTTG
15913723 -TTCAAA
1 TTTCAAA
15913729 TCCTGTCTTT
Statistics
Matches: 127, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
145 22 0.17
146 62 0.49
147 4 0.03
148 39 0.31
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (147 bp):
TTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGCACACGCTGAGGTAATTTCA
ATTTATGCTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTCAAGCCTCAGGGCACGCCGAGAT
ATTTTAAATTCCTCTTG
Found at i:15913869 original size:171 final size:171
Alignment explanation
Indices: 15913577--15913949 Score: 520
Period size: 171 Copynumber: 2.2 Consensus size: 171
15913567 ATTCCTGTTG
* * *
15913577 TTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGTAATTTCAAT
1 TTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTAAGTAATTTCAAT
15913642 TTATGCTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGATA
66 TTATGCTTC-AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGATA
15913707 TTTTCAAATTCTCTTGTTCAAATCCTGTCTTTAATTTTTACT
130 TTTTCAAATTCTCTTGTTCAAATCCTGTCTTTAATTTTTACT
*
15913749 TTTCCAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTAAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTAA-GTAATTTCAA
* * * *
15913814 TTTATGTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTA
65 TTTATGCTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGATA
* * * *
15913878 TTTTC-AATT-TC-TATT----T--T-TC--CAATTTCTGCT
130 TTTTCAAATTCTCTTGTTCAAATCCTGTCTTTAATTTTTACT
*
15913908 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC
15913950 GGGTCACATG
Statistics
Matches: 186, Mismatches: 14, Indels: 15
0.87 0.07 0.07
Matches are distributed among these distances:
159 48 0.26
161 2 0.01
162 1 0.01
164 1 0.01
168 3 0.02
169 2 0.01
170 4 0.02
171 56 0.30
172 50 0.27
173 19 0.10
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (171 bp):
TTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTAAGTAATTTCAAT
TTATGCTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGATAT
TTTCAAATTCTCTTGTTCAAATCCTGTCTTTAATTTTTACT
Found at i:15913877 original size:71 final size:71
Alignment explanation
Indices: 15913749--15913887 Score: 206
Period size: 71 Copynumber: 2.0 Consensus size: 71
15913739 AATTTTTACT
* *
15913749 TTTCCAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTAAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAA
15913814 TTTATG
66 TTTATG
* ** * * *
15913820 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAA
15913885 TTT
66 TTT
15913888 CTATTTTTCC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
71 60 1.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (71 bp):
TTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAA
TTTATG
Found at i:15914060 original size:90 final size:88
Alignment explanation
Indices: 15913820--15914064 Score: 280
Period size: 90 Copynumber: 2.8 Consensus size: 88
15913810 TCAATTTATG
* *
15913820 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC-GCTGAGGTATTTTCA
1 TTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACTGCTGAGGTATTTTCA
** * * * **
15913884 ATTTCTATTTTTCCAATTTCTGC
66 AAATCTACTTTTCAAAATTAAGC
*
15913907 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTT
1 -TTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC-TGCT-GAGGTATTT
*
15913971 TCAAAATCTGCTTTTCAAAATTAAG-
63 TCAAAATCTACTTTTCAAAATTAAGC
* * * *
15913996 TTTCAAAAGAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTAAGCTATTT
1 TTTC-AAA-AACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC-TGCTGAGGTATTT
15914061 TCAA
63 TCAA
15914065 GTTCTATGTC
Statistics
Matches: 136, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
88 52 0.38
89 4 0.03
90 79 0.58
91 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (88 bp):
TTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACTGCTGAGGTATTTTCA
AAATCTACTTTTCAAAATTAAGC
Found at i:15915498 original size:14 final size:14
Alignment explanation
Indices: 15915481--15915509 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15915471 TCTTCTCCCC
15915481 TCTCCCCTCTCCTT
1 TCTCCCCTCTCCTT
15915495 TCTCCCCTCTCCTT
1 TCTCCCCTCTCCTT
15915509 T
1 T
15915510 TCTCTCTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (14 bp):
TCTCCCCTCTCCTT
Found at i:15915499 original size:21 final size:19
Alignment explanation
Indices: 15915466--15915506 Score: 64
Period size: 21 Copynumber: 2.1 Consensus size: 19
15915456 GTGGCCGAAG
15915466 CCCTCTCTTCTCCCCTCTC
1 CCCTCTCTTCTCCCCTCTC
15915485 CCCTCTCCTTTCTCCCCTCTC
1 CCCTCT-C-TTCTCCCCTCTC
15915506 C
1 C
15915507 TTTTCTCTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 6 0.30
20 1 0.05
21 13 0.65
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (19 bp):
CCCTCTCTTCTCCCCTCTC
Found at i:15916594 original size:36 final size:37
Alignment explanation
Indices: 15916527--15916599 Score: 105
Period size: 36 Copynumber: 2.0 Consensus size: 37
15916517 GAACATTGAA
15916527 ACTATGTATACATACATATATATATTAATTATTTATT
1 ACTATGTATACATACATATATATATTAATTATTTATT
* *
15916564 ACTATGTATATACTTCA-ATAT-TATTAATTATTTATT
1 ACTATGTATACA-TACATATATATATTAATTATTTATT
15916600 TTATCACTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
36 15 0.45
37 15 0.45
38 3 0.09
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.51
Consensus pattern (37 bp):
ACTATGTATACATACATATATATATTAATTATTTATT
Found at i:15926191 original size:131 final size:129
Alignment explanation
Indices: 15925989--15926473 Score: 481
Period size: 131 Copynumber: 3.7 Consensus size: 129
15925979 AGATTCGATA
* * * * * *
15925989 TTTGGCAATTCGCGGAATAATGCCCTAACGTGTTGGGTTGCGATTTCGCGTTTGCTCAAAACAAT
1 TTTGACAATTCG-AGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGCTCAAAACAAT
*
15926054 CAAATATCCCTTCGAAATTTCACTCATGTCTTATAAAAATCCTTTAAAACGAAGGCAATACTTGG
65 CGAATATCCCTT-GAAATTTCACTCATGTCTTATAAAAA-CCTTTAAAACGAAGGCAATACTTGG
15926119 TG
128 TG
* * * *
15926121 TTTGATAATTCGAGAATCATGCCCTATCGTGCTAGGTTGTGATTTCTCGTTTGTTCAAAACAATC
1 TTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGCTCAAAACAATC
* * * * ** *
15926186 GAATATTCCTTTAAGTTTTCACTCGTGT-TTATTAAAAACCTCCCAAAACGAAGACAATACTTGG
66 GAATATCCCTTGAA-ATTTCACTCATGTCTTA-TAAAAACCT-TTAAAACGAAGGCAATACTTGG
15926250 TG
128 TG
*
15926252 TTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATC
1 TTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGCTCAAAACAATC
* * ** * * * * *
15926317 GAATATTCCTTTAGGTTTTCTCTCATGTCTTTTAGGAAAACACTTTAAAACAAAGGCGAT-GTTC
66 GAATATCCCTTGA-AATTTCACTCATGTCTTATA--AAAAC-CTTTAAAACGAAGGCAATACTT-
*
15926381 AAG-G
126 -GGTG
* * * * * * * *
15926385 TTTGGCAATTCGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCAAAACGATT
1 TTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGCTCAAAACAATC
* *
15926450 GAAGATCCCTTCGGAATTTCACTC
66 GAATATCCCTT-GAAATTTCACTC
15926474 GTATTTTCTA
Statistics
Matches: 294, Mismatches: 48, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
130 8 0.03
131 180 0.61
132 14 0.05
133 89 0.30
134 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (129 bp):
TTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGCTCAAAACAATC
GAATATCCCTTGAAATTTCACTCATGTCTTATAAAAACCTTTAAAACGAAGGCAATACTTGGTG
Found at i:15926472 original size:264 final size:262
Alignment explanation
Indices: 15925989--15926475 Score: 572
Period size: 264 Copynumber: 1.8 Consensus size: 262
15925979 AGATTCGATA
* * *
15925989 TTTGGCAATTCGCGGAATAATGCCCTAACGTGTTGGGTTGCGATTTCGCGTTTGCTCAAAACAAT
1 TTTGACAATTCGCAGAATAATGCCCTAACGTGCTGGGTTGCGATTTCGCGTTTGCTCAAAACAAT
* * *
15926054 CAAATATCCCTTCGAAATTTCACTCATGTCTTATAAAAATCCTTTAAAACGAAGGCAATACTTGG
66 CAAATATCCCTTAGAAATTTCACTCATGTCTTATAAAAATCCTTTAAAACAAAGGCAATACTTAG
* * *
15926119 TGTTTGATAATTCGAGAATCATGCCCTATCGTGCTAGGTTGTGATTTCTCGTTTGTTCAAAACAA
131 TGTTTGACAATTCGAGAATCATGCCCTATCGTGCTAGGTTGCGATTTCTCATTTGTTCAAAACAA
* * *
15926184 TCGAATATTCCTTTAAGTTTTCACTCGTGTTTATTAAAAACCTCCCAAAACGAAGACAATACTTG
196 TCGAAGATCCCTTGAAG-TTTCACTCGTGTTTATTAAAAACCTCCCAAAACGAAGACAATACTTG
15926249 GTG
260 GTG
* * * *
15926252 TTTGACAATTCG-AGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAAT
1 TTTGACAATTCGCAGAATAATGCCCTAACGTGCTGGGTTGCGATTTCGCGTTTGCTCAAAACAAT
* * ** * * * *
15926316 CGAATATTCCTTTAG-GTTTTCTCTCATGTCTTTTAGGAAAA-CACTTTAAAACAAAGGCGAT-G
66 CAAATA-TCCCTTAGAAATTTCACTCATGTCTTATA--AAAATC-CTTTAAAACAAAGGCAATAC
* * * * *
15926378 TTCAAG-GTTTGGCAATTCGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCA
127 TT--AGTGTTTGACAATTCGAGAATCATGCCCTATCGTGCTAGGTTGCGATTTCTCATTTGTTCA
* *
15926442 AAACGATTGAAGATCCCTTCGGAA-TTTCACTCGT
190 AAACAATCGAAGATCCCTT--GAAGTTTCACTCGT
15926476 ATTTTCTAAG
Statistics
Matches: 185, Mismatches: 31, Indels: 15
0.80 0.13 0.06
Matches are distributed among these distances:
262 67 0.36
263 20 0.11
264 95 0.51
265 1 0.01
266 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (262 bp):
TTTGACAATTCGCAGAATAATGCCCTAACGTGCTGGGTTGCGATTTCGCGTTTGCTCAAAACAAT
CAAATATCCCTTAGAAATTTCACTCATGTCTTATAAAAATCCTTTAAAACAAAGGCAATACTTAG
TGTTTGACAATTCGAGAATCATGCCCTATCGTGCTAGGTTGCGATTTCTCATTTGTTCAAAACAA
TCGAAGATCCCTTGAAGTTTCACTCGTGTTTATTAAAAACCTCCCAAAACGAAGACAATACTTGG
TG
Found at i:15927592 original size:25 final size:25
Alignment explanation
Indices: 15927550--15927616 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
15927540 TATTTTGGAG
* *
15927550 AGAAGA-AATTTTTTTTGAGATTCA
1 AGAAGAGATTTTTTTTTGAAATTCA
15927574 AGAAGAGATTTTTTTTTGAAATTCA
1 AGAAGAGATTTTTTTTTGAAATTCA
* * *
15927599 AGAGGGGTTTTTTTTTTG
1 AGAAGAGATTTTTTTTTG
15927617 GGAACAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 6 0.16
25 31 0.84
ACGTcount: A:0.30, C:0.03, G:0.21, T:0.46
Consensus pattern (25 bp):
AGAAGAGATTTTTTTTTGAAATTCA
Found at i:15928332 original size:3 final size:3
Alignment explanation
Indices: 15928115--15928317 Score: 94
Period size: 3 Copynumber: 66.7 Consensus size: 3
15928105 TTTTCTTGCA
* * *
15928115 TAT TATT TAC TAT TAT TAT TAT TACCT TCAT T-T CAT TAT TAT TAT TAC
1 TAT TA-T TAT TAT TAT TAT TAT TA--T T-AT TAT TAT TAT TAT TAT TAT
** * * * * *
15928163 TAT TGC TAT TTT TTT TGT TGT T-T ATAT TTT TAT T-T ATAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT -TAT TAT TAT
* * * *
15928208 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT CTCCGT GAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT
* * * * *
15928256 TAT TAT TAT TAT T-T TGT TA- TAT TAT TGT TA- TAT TAT CAC TAT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
15928301 TCT TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA
15928318 CTACAACTAT
Statistics
Matches: 151, Mismatches: 34, Indels: 30
0.70 0.16 0.14
Matches are distributed among these distances:
2 9 0.06
3 131 0.87
4 7 0.05
5 2 0.01
6 2 0.01
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:15928505 original size:21 final size:21
Alignment explanation
Indices: 15928460--15928540 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
15928450 TTTCTCTGTT
** *
15928460 TTATTACTATTATTAATATCA
1 TTATTACTATTATTTTTATTA
*
15928481 TTATTACTATTATTTTTATTT
1 TTATTACTATTATTTTTATTA
15928502 TTATT--T-TTATTTTTATTA
1 TTATTACTATTATTTTTATTA
* * *
15928520 CTACTACTGTTATTTTTATTA
1 TTATTACTATTATTTTTATTA
15928541 ACATATTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
18 14 0.28
19 1 0.02
20 1 0.02
21 34 0.68
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.64
Consensus pattern (21 bp):
TTATTACTATTATTTTTATTA
Found at i:15928538 original size:6 final size:6
Alignment explanation
Indices: 15928490--15928518 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
15928480 ATTATTACTA
15928490 TTATTT TTATTT TTATTT TTATTT TTATT
1 TTATTT TTATTT TTATTT TTATTT TTATT
15928519 ACTACTACTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTATTT
Found at i:15928661 original size:20 final size:20
Alignment explanation
Indices: 15928609--15928661 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
15928599 CAACATATAC
*
15928609 TATTAT-TATTAATGTACTAT
1 TATTATATATTTAT-TACTAT
* *
15928629 TATTTTCTATTTATTACTAT
1 TATTATATATTTATTACTAT
*
15928649 TATTATATTTTTA
1 TATTATATATTTA
15928662 CCCATTACTC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (20 bp):
TATTATATATTTATTACTAT
Found at i:15937141 original size:205 final size:205
Alignment explanation
Indices: 15936789--15938398 Score: 2645
Period size: 205 Copynumber: 7.9 Consensus size: 205
15936779 GTAATAGGCC
* * *
15936789 ACACATAGTAGATCTCGCCTTCAGATG-TTT-ATGCTGAAGCGGATCCAAGATGGTTTGGCATCC
1 ACACATAGCAGATCTCGCCTTCAGACGATTTCA--CTGAAGCAGATCCAAGATGGTTTGGCATCC
*
15936852 TTGTGTTTACAAGGAGCAAATCGAACACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCA
64 TTGTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCA
* * * *
15936917 AATCTAAGATGATTTGTCGTCTTTGTATCGTCAGAGAAAGAATTGAAGTTTGGCATCTTCACTTT
129 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
*
15936982 GATGAAGAGCAG
194 GATGGAGAGCAG
* * *
15936994 ACACATAGCAGATCTCACCTTCAGATGATTTCGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
15937059 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
*
15937124 TCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAATGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
15937189 TGGAGAGCAG
196 TGGAGAGCAG
* *
15937199 ACACATAGCAGATCTCGCCTTCAGACGATTTTACTGAAGCAGATCCAAGATAGTTTGGCATCCTT
1 ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
* *
15937264 GTGTTTACAAGGAGCAAATCGAAAACATAGTTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
* *
15937329 TCTAAGATGATTTGTCGTCTCTGTATTGTCAAAGAACGAATTGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
15937394 TGGAGAGCAG
196 TGGAGAGCAG
15937404 ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
15937469 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
* * *
15937534 TCTAAGACGATTTTTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATTTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
15937599 TGGAGAGCAG
196 TGGAGAGCAG
15937609 ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
*
15937674 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGTTTTCACGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
* *
15937739 TCTAAGAAGATCTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
* *
15937804 TGGATAACAG
196 TGGAGAGCAG
* *
15937814 ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGGAGCAGATCCAAGATGGTTTGGCATCTTT
1 ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
* * *
15937879 GTGTTTACAAGGAACAAATCGAAGACATGGTTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
*
15937944 TCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCAAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
15938009 TGGAGAGCAG
196 TGGAGAGCAG
* * *
15938019 ACACATAGCAGATCTCGCCTTTAGATGATTTCACTGAAGCAAATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
* * *
15938084 GTGTTTACAAGGAACAAATCGAAGACATGGTTGATTTGGCTTTCACGTGATTACGA-GAAAGCAA
66 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATG-AAGCAA
*
15938148 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
130 ATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
15938213 ATGGAGAGCAG
195 ATGGAGAGCAG
* * * * *
15938224 ACACATAGCAGATCTCACCTTCGGATG-TTTACGCTGAAGCGGATCCAAGATGGTTTGGCATCCT
1 ACACATAGCAGATCTCGCCTTCAGACGATTT-CACTGAAGCAGATCCAAGATGGTTTGGCATCCT
* * * * * * *
15938288 TATGCTTACAAGGAGCAAATCGAA-TCATAGTTGATTTGGCTTTCACGTGCTTACGTTAAAGCAA
65 TGTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAA
* * * *
15938352 ATCTAAGATGATTTGGCATCTCTGTATTGTCAGGGAACAAATCGAAG
130 ATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAG
15938399 AAAAAGATCT
Statistics
Matches: 1327, Mismatches: 73, Indels: 11
0.94 0.05 0.01
Matches are distributed among these distances:
204 80 0.06
205 1244 0.94
206 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (205 bp):
ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
TCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
TGGAGAGCAG
Found at i:15938520 original size:44 final size:43
Alignment explanation
Indices: 15938452--15938537 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 43
15938442 GATTTCAGCA
*
15938452 TGGCATCCCTGTGTTTATAAGGAACA-AGTTGAAGACAGCAGATT
1 TGGCATCCCTGTGTTTATAAGGAACAGA-TCGAAGA-AGCAGATT
**
15938496 TGGCATCCCTGTGTTTATGGGGAACAGATCGAAGAAGCAGAT
1 TGGCATCCCTGTGTTTATAAGGAACAGATCGAAGAAGCAGAT
15938538 CAAGAACTCA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 7 0.18
44 30 0.79
45 1 0.03
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (43 bp):
TGGCATCCCTGTGTTTATAAGGAACAGATCGAAGAAGCAGATT
Found at i:15938987 original size:24 final size:25
Alignment explanation
Indices: 15938959--15939010 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
15938949 TATTTTGGAG
*
15938959 AGAAGA-AATTTTTTTTGAGATTCA
1 AGAAGAGAATTTTTTTTGAAATTCA
*
15938983 AGAAGAGATTTTTTTTTGAAATTCA
1 AGAAGAGAATTTTTTTTGAAATTCA
15939008 AGA
1 AGA
15939011 GGGTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.40
Consensus pattern (25 bp):
AGAAGAGAATTTTTTTTGAAATTCA
Found at i:15939001 original size:25 final size:25
Alignment explanation
Indices: 15938959--15939024 Score: 82
Period size: 24 Copynumber: 2.7 Consensus size: 25
15938949 TATTTTGGAG
* *
15938959 AGAAGA-AATTTTTTTTGAGATTCA
1 AGAAGAGATTTTTTTTTGAAATTCA
15938983 AGAAGAGATTTTTTTTTGAAATTCA
1 AGAAGAGATTTTTTTTTGAAATTCA
* *
15939008 AG-AGGGTTTTTTTTTTG
1 AGAAGAGATTTTTTTTTG
15939025 GGAACAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 19 0.51
25 18 0.49
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (25 bp):
AGAAGAGATTTTTTTTTGAAATTCA
Found at i:15939737 original size:3 final size:3
Alignment explanation
Indices: 15939523--15939722 Score: 88
Period size: 3 Copynumber: 65.7 Consensus size: 3
15939513 TTTTCTTGCA
* * *
15939523 TAT TATT TAC TAT TAT TAT TAT TACCT TCAT T-T CAT TAT TAT TAT TAC
1 TAT TA-T TAT TAT TAT TAT TAT TA--T T-AT TAT TAT TAT TAT TAT TAT
** * * * * *
15939571 TAT TGC TAT TTT TTT TGT TGT T-T ATAT TTT TAT T-T ATAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT -TAT TAT TAT
* * * *
15939616 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT CTCCGT GAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT TAT
* * * * * *
15939664 TAT TAT TAT T-T TGT TA- TAT TAT TGT TA- TAT TAT CAC TAT TTT TCT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
15939709 TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TA
15939723 CTACAACTAT
Statistics
Matches: 148, Mismatches: 34, Indels: 30
0.70 0.16 0.14
Matches are distributed among these distances:
2 9 0.06
3 128 0.86
4 7 0.05
5 2 0.01
6 2 0.01
ACGTcount: A:0.27, C:0.08, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:15939912 original size:21 final size:21
Alignment explanation
Indices: 15939867--15939947 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
15939857 TTTCTCTGTT
** *
15939867 TTATTACTATTATTAATATCA
1 TTATTACTATTATTTTTATTA
*
15939888 TTATTACTATTATTTTTATTT
1 TTATTACTATTATTTTTATTA
15939909 TTATT--T-TTATTTTTATTA
1 TTATTACTATTATTTTTATTA
* * *
15939927 CTACTACTGTTATTTTTATTA
1 TTATTACTATTATTTTTATTA
15939948 ACATATTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
18 14 0.28
19 1 0.02
20 1 0.02
21 34 0.68
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.64
Consensus pattern (21 bp):
TTATTACTATTATTTTTATTA
Found at i:15939945 original size:6 final size:6
Alignment explanation
Indices: 15939897--15939925 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
15939887 ATTATTACTA
15939897 TTATTT TTATTT TTATTT TTATTT TTATT
1 TTATTT TTATTT TTATTT TTATTT TTATT
15939926 ACTACTACTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTATTT
Found at i:15940068 original size:20 final size:20
Alignment explanation
Indices: 15940016--15940068 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
15940006 CAACATATAC
*
15940016 TATTAT-TATTAATGTACTAT
1 TATTATATATTTAT-TACTAT
* *
15940036 TATTTTCTATTTATTACTAT
1 TATTATATATTTATTACTAT
*
15940056 TATTATATTTTTA
1 TATTATATATTTA
15940069 CCCATTACTC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (20 bp):
TATTATATATTTATTACTAT
Found at i:15941364 original size:64 final size:64
Alignment explanation
Indices: 15941291--15941501 Score: 146
Period size: 64 Copynumber: 3.2 Consensus size: 64
15941281 CTGGGCCAGA
*
15941291 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* ** * ** *
15941355 GCCCATTTCAAAATACATGCAACATCAATAAACATATG-C-AAG-CCC--ATTTGGGTAACAGTG
1 GCCCATTTC-AGAT---T-----A-CAATAAAC-TGGGCCTTAGCCCCTTATTCAGATAACA---
* *
15941415 GTACTGGGCCAGA-
52 GTA-TGGCCCATAG
*
15941428 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
15941492 GCCCATTTCA
1 GCCCATTTCA
15941502 AAATACATGC
Statistics
Matches: 105, Mismatches: 21, Indels: 42
0.62 0.12 0.25
Matches are distributed among these distances:
62 2 0.02
63 16 0.15
64 23 0.22
65 6 0.06
67 9 0.09
68 1 0.01
69 1 0.01
70 9 0.09
72 6 0.06
73 14 0.13
74 16 0.15
75 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:15941503 original size:137 final size:136
Alignment explanation
Indices: 15941257--15941542 Score: 545
Period size: 137 Copynumber: 2.1 Consensus size: 136
15941247 TATTGGGCCT
**
15941257 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
15941322 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
15941387 CATATGC
130 CATATGC
15941394 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
15941459 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
15941524 ATATGC
131 ATATGC
15941530 AAGCCCATTTGGG
1 AAGCCCATTTGGG
15941543 GAGACTACTC
Statistics
Matches: 147, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
136 22 0.15
137 125 0.85
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:15941827 original size:25 final size:27
Alignment explanation
Indices: 15941790--15941842 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
15941780 TCAAACATGC
15941790 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* *
15941816 ATTTCGGT-AATTTTACACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
15941842 A
1 A
15941843 AACAGTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:15943354 original size:26 final size:26
Alignment explanation
Indices: 15943318--15943453 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
15943308 CATGATATTC
15943318 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
15943344 TTATCATGAAACATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
15943370 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
15943396 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
15943422 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
15943448 TTATCA
1 TTATCA
15943454 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:15944115 original size:3 final size:3
Alignment explanation
Indices: 15944107--15944233 Score: 84
Period size: 3 Copynumber: 42.7 Consensus size: 3
15944097 TGGTTTCGAC
* * *
15944107 AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT ACCT -AT GAT ACT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
* * * * *
15944151 AAT AGT AAT AAT AAG AA- AATT AAT ATT AGT ATT AAT AAT AAT GGAA-
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT --AAT
* * *
15944197 AAT AAT AAT AAC AAT GAT AAT -AT AGT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
15944234 AAGTGAAATT
Statistics
Matches: 97, Mismatches: 18, Indels: 18
0.73 0.14 0.14
Matches are distributed among these distances:
2 9 0.09
3 83 0.86
4 3 0.03
5 2 0.02
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:15944258 original size:43 final size:43
Alignment explanation
Indices: 15944171--15944261 Score: 105
Period size: 43 Copynumber: 2.1 Consensus size: 43
15944161 ATAAGAAAAT
* *
15944171 TAATATTAGTATTAATAATAATGGAAAATAATAATAACAATGA
1 TAATATTAGTAATAATAATAAAGGAAAATAATAATAACAATGA
* * *
15944214 TAATA-TAGTAATAATAATAAAAGTGAAATTAATAGTAA-ATTGA
1 TAATATTAGTAATAATAAT-AAAG-GAAAATAATAATAACAATGA
15944257 TAATA
1 TAATA
15944262 ATAATGTATG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
42 12 0.29
43 17 0.41
44 12 0.29
ACGTcount: A:0.56, C:0.01, G:0.10, T:0.33
Consensus pattern (43 bp):
TAATATTAGTAATAATAATAAAGGAAAATAATAATAACAATGA
Found at i:15945965 original size:20 final size:19
Alignment explanation
Indices: 15945942--15945987 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
15945932 GTATGTACAC
15945942 AATATATATAATATATTAAA
1 AATATATATAATA-ATTAAA
*
15945962 AATATATATAATAGTTAAA
1 AATATATATAATAATTAAA
15945981 AA-ATATA
1 AATATATA
15945988 CATTGTAGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 5 0.20
19 7 0.28
20 13 0.52
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
AATATATATAATAATTAAA
Found at i:15945968 original size:18 final size:20
Alignment explanation
Indices: 15945945--15945987 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
15945935 TGTACACAAT
15945945 ATATATAAT-ATA-TTAAAA
1 ATATATAATAATAGTTAAAA
15945963 ATATAT-ATAATAGTTAAAA
1 ATATATAATAATAGTTAAAA
15945982 A-ATATA
1 ATATATA
15945988 CATTGTAGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.09
18 13 0.59
19 7 0.32
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (20 bp):
ATATATAATAATAGTTAAAA
Found at i:15946222 original size:35 final size:35
Alignment explanation
Indices: 15946176--15946317 Score: 214
Period size: 35 Copynumber: 4.0 Consensus size: 35
15946166 ATAATCTTCA
*
15946176 ATGATATGCAATCTTAGATATTG-TACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATA-TGATACAATCTTAGAT
*
15946212 ATAATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
15946247 ATGGTTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
15946282 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
15946318 AGATATGATT
Statistics
Matches: 98, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
34 2 0.02
35 79 0.81
36 4 0.04
37 13 0.13
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:15946224 original size:18 final size:18
Alignment explanation
Indices: 15946184--15946317 Score: 168
Period size: 18 Copynumber: 7.6 Consensus size: 18
15946174 CAATGATATG
15946184 CAATCTTAGATAT--TGTA
1 CAATCTTAGATATGAT-TA
* * *
15946201 CAATCTTAAATATAATTG
1 CAATCTTAGATATGATTA
15946219 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
* *
15946236 CAATCTTAGATATGGTTG
1 CAATCTTAGATATGATTA
15946254 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
15946271 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
15946289 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
15946308 CAATCTTAGA
1 CAATCTTAGA
15946318 AGATATGATT
Statistics
Matches: 101, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
17 43 0.43
18 46 0.46
19 12 0.12
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:15946822 original size:18 final size:17
Alignment explanation
Indices: 15946798--15946857 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
15946788 CCAATATATT
15946798 TTATATTTTTTATATAA
1 TTATATTTTTTATATAA
*
15946815 TTAT-TATTCTTATA-AA
1 TTATAT-TTTTTATATAA
15946831 -TATATTTTTTATTATATA
1 TTATATTTTTTA-TATA-A
15946849 TTATATTTT
1 TTATATTTT
15946858 AAATTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
15 8 0.23
16 6 0.17
17 12 0.34
18 1 0.03
19 8 0.23
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATATTTTTTATATAA
Found at i:15946842 original size:15 final size:16
Alignment explanation
Indices: 15946799--15946857 Score: 59
Period size: 16 Copynumber: 3.5 Consensus size: 16
15946789 CAATATATTT
15946799 TATATTTTTTATATAA
1 TATATTTTTTATATAA
15946815 T-TATTATTCTTATA-AA
1 TATATT-TT-TTATATAA
15946831 TATATTTTTTATTATATA
1 TATATTTTTTA-TATA-A
15946849 TTATATTTT
1 -TATATTTT
15946858 AAATTTATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
15 7 0.19
16 10 0.28
17 10 0.28
18 1 0.03
19 8 0.22
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TATATTTTTTATATAA
Found at i:15946882 original size:26 final size:26
Alignment explanation
Indices: 15946834--15946883 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
15946824 TTATAAATAT
* * * *
15946834 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
15946860 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
15946884 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:15949592 original size:40 final size:41
Alignment explanation
Indices: 15949537--15949613 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
15949527 ATCCGCTCTA
* *
15949537 CTGCTCCACTGCAACTT-AGTGAGATAAGCTTTGTTTTGAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTTTGAT
*
15949577 CTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTT
15949614 ATTCATAACT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 16 0.48
41 17 0.52
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (41 bp):
CTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTTTGAT
Found at i:15949869 original size:86 final size:87
Alignment explanation
Indices: 15949749--15950310 Score: 643
Period size: 86 Copynumber: 6.4 Consensus size: 87
15949739 AGATAGGATG
* *
15949749 GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCA
1 GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGACCCATCGCCTTCGATCTGTTTCCCT
*
15949814 ACTGCTTAGGGTGATAAGATCT
66 ACTGCTTAGGGAGATAAGATCT
* * * *** * * *
15949836 GT-AATTTAGTCTGTTACCCTACTGCTTAAGGGTTTAAGACGTGTCACCCTCGATCTGTTTCCCA
1 GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGACCCATCGCCTTCGATCTGTTTCCCT
* * *
15949900 ACTACTTAGGGGGTGGTTAAGATCT
66 ACTGCTTA--GGG-AGATAAGATCT
* * * *
15949925 GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTGATG-CCCTTCGTCTTCGATCTG-CTCCA
1 GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTT-AAGACCCATCGCCTTCGATCTGTTTCC-
15949988 CTACTGCTTAGGGAGATAAGATCT
64 CTACTGCTTAGGGAGATAAGATCT
** * * * * *
15950012 G-CGATTTAGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTG-CTCCAC
1 GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGACCCATCGCCTTCGATCTGTTTCC-C
15950075 TACTGCTTAGGGAGATAAGATCT
65 TACTGCTTAGGGAGATAAGATCT
* * *
15950098 GTAAATTTATCCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCGCCTTCGATCTGTTTCCCT
1 GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGACCCATCGCCTTCGATCTGTTTCCCT
*
15950163 ACTGCTTAGGG-GTTAAGATCT
66 ACTGCTTAGGGAGATAAGATCT
* * * *
15950184 ATAAATTCAGCCTGTTACCCTATTGCTTAGGGGTTTAA-AGCCCATCGCATTAGATCTGTTTCCC
1 GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGA-CCCATCGCCTTCGATCTGTTTCCC
* * *
15950248 TACTGCTGAGGGGGTTAAGATCT
65 TACTGCTTAGGGAGATAAGATCT
* *
15950271 GTAAATCGTCAGCCTGTTACCCTACTGTTTAGGGGGTTAA
1 GTAAAT--TCAGCCTGTTACCCTACTGCTTAGGGGTTTAA
15950311 AGCTTATGAA
Statistics
Matches: 409, Mismatches: 53, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
85 3 0.01
86 213 0.52
87 89 0.22
88 9 0.02
89 43 0.11
90 50 0.12
91 2 0.00
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (87 bp):
GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGACCCATCGCCTTCGATCTGTTTCCCT
ACTGCTTAGGGAGATAAGATCT
Found at i:15949950 original size:176 final size:173
Alignment explanation
Indices: 15949749--15950310 Score: 686
Period size: 173 Copynumber: 3.2 Consensus size: 173
15949739 AGATAGGATG
*
15949749 GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCA
1 GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCT
* *
15949814 ACTGCTTAGGGTGATAAGATCTGTAATTTAGTCTGTTACCCTACTGCTTAAGGGTTTAAGA-CGT
66 ACTGCTTAGGG-GATAAGATCTGTAATTTAGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCT
* * * *
15949878 GTCACCCTCGATCTGTTTCCCAACTACTTAGGGGGTGGTTAAGATCT
130 -TCGCCTTCGATCTGTTTCCCTACTGCTTA-GGGG-GGTTAAGATCT
* * * * *
15949925 GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTGATGCCCTTCGTCTTCGATCTG-CTCCAC
1 GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCC-C
**
15949989 TACTGCTTAGGGAGATAAGATCTGCGATTTAGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCC
65 TACTGCTTAGGG-GATAAGATCTGTAATTTAGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCC
* * * *
15950054 TTCGTCTTCGATCTG-CTCCACTACTGCTTA-GGGAGATAAGATCT
129 TTCGCCTTCGATCTGTTTCC-CTACTGCTTAGGGGGGTTAAGATCT
* * * *
15950098 GTAAATTTATCCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCGCCTTCGATCTGTTTCCCT
1 GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCT
* * * * *
15950163 ACTGCTTAGGGGTTAAGATCTATAAATTCAGCCTGTTACCCTATTGCTTAGGGGTTTAA-AGCCC
66 ACTGCTTAGGGGATAAGATCTGT-AATTTAGTCTGTTACCCTACTGCTTAGGGGTTTAAGA-CCC
* * * *
15950227 ATCGCATTAGATCTGTTTCCCTACTGCTGA-GGGGGTTAAGATCT
129 TTCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGGTTAAGATCT
* *
15950271 GTAAATCGTCAGCCTGTTACCCTACTGTTTAGGGGGTTAA
1 GTAAAT--TCAGCCTGTTACCCTACTGCTTAGGGGTTTAA
15950311 AGCTTATGAA
Statistics
Matches: 330, Mismatches: 47, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
172 10 0.03
173 144 0.44
174 9 0.03
175 34 0.10
176 131 0.40
177 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (173 bp):
GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCT
ACTGCTTAGGGGATAAGATCTGTAATTTAGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTT
CGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGGTTAAGATCT
Found at i:15949995 original size:44 final size:44
Alignment explanation
Indices: 15949944--15950086 Score: 138
Period size: 44 Copynumber: 3.3 Consensus size: 44
15949934 GCCTGTTACC
15949944 CTACTGCTTAGGGGTTTGATGCCCTTCGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGTTTGATGCCCTTCGTCTTCGATCTGCTCCA
** * * *
15949988 CTACTGCTTAGGGAGATAAGAT---CTGCGAT-TTAG-TCTGTTACC-
1 CTACTGCTTAGGG-G-TTTGATGCCCTTCG-TCTTCGATCTGCT-CCA
*
15950030 CTACTGCTTAGGGGTTT-AAGACCCTTCGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGTTTGATG-CCCTTCGTCTTCGATCTGCTCCA
15950074 CTACTGCTTAGGG
1 CTACTGCTTAGGG
15950087 AGATAAGATC
Statistics
Matches: 77, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 1 0.01
42 19 0.25
43 18 0.23
44 32 0.42
45 1 0.01
46 4 0.05
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.34
Consensus pattern (44 bp):
CTACTGCTTAGGGGTTTGATGCCCTTCGTCTTCGATCTGCTCCA
Found at i:15950094 original size:44 final size:44
Alignment explanation
Indices: 15949965--15950094 Score: 153
Period size: 42 Copynumber: 3.0 Consensus size: 44
15949955 GGGTTTGATG
15949965 CCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 CCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* * * * *
15950009 -TCTGCGAT-TTAG-TCTGTTACC-CTACTGCTTAGGG-GTTTAAGA
1 CCCTTCG-TCTTCGATCTGCT-CCACTACTGCTTAGGGAG-ATAAGA
15950051 CCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 CCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
15950095 TCTGTAAATT
Statistics
Matches: 68, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
41 1 0.01
42 24 0.35
43 18 0.26
44 24 0.35
45 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (44 bp):
CCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
Found at i:15962287 original size:3 final size:3
Alignment explanation
Indices: 15962279--15962399 Score: 63
Period size: 3 Copynumber: 40.7 Consensus size: 3
15962269 TATAAAAGAC
* * * *
15962279 AAT AAT AAT AAT AAT AAT -AT AAT ACCT -AT GAT ACT AAT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
* * * * *
15962323 AAT AAG AAG AA- AATT AAT ATT AGT ATT AAT AAT AAT GGAA- AAT AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT --AAT AAT AAT
* * *
15962369 AAT AAC AAT GAT AAT -AT AGT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
15962400 AAGTGAAATT
Statistics
Matches: 91, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
2 9 0.10
3 77 0.85
4 3 0.03
5 2 0.02
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:15962783 original size:22 final size:22
Alignment explanation
Indices: 15962724--15962783 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
15962714 CGTGACATAC
* *
15962724 AATAGTATAAAAGACATATAACT
1 AATAATATAAAA-ATATATAACT
* *
15962747 AATAATATTACAATATAT-ACAT
1 AATAATATAAAAATATATAAC-T
15962769 AATAATATAAAAATA
1 AATAATATAAAAATA
15962784 ATATTAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
21 2 0.07
22 19 0.63
23 9 0.30
ACGTcount: A:0.60, C:0.07, G:0.03, T:0.30
Consensus pattern (22 bp):
AATAATATAAAAATATATAACT
Found at i:15962808 original size:24 final size:23
Alignment explanation
Indices: 15962758--15962842 Score: 73
Period size: 24 Copynumber: 3.5 Consensus size: 23
15962748 ATAATATTAC
* * *
15962758 AATATATACATAATAATATAAAAAT
1 AATATATA-A-AAAAATATATACAT
15962783 AATAT-TAAAAAAACCTATATACAT
1 AATATATAAAAAAA--TATATACAT
* *
15962807 AACATATATGAAAAATATATACAT
1 AATATATA-AAAAAATATATACAT
15962831 AATATATAAAAA
1 AATATATAAAAA
15962843 TGTATCCGTA
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
22 4 0.08
23 4 0.08
24 29 0.59
25 7 0.14
26 5 0.10
ACGTcount: A:0.62, C:0.07, G:0.01, T:0.29
Consensus pattern (23 bp):
AATATATAAAAAAATATATACAT
Found at i:15963037 original size:19 final size:20
Alignment explanation
Indices: 15963014--15963066 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
15963004 TATGTACACA
*
15963014 ATATATATAATATATTAAAAT
1 ATATATATAATA-GTTAAAAT
*
15963035 ATATATATAATAGTTAAAAA
1 ATATATATAATAGTTAAAAT
*
15963055 ATATACATAATA
1 ATATATATAATA
15963067 TAATGTTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (20 bp):
ATATATATAATAGTTAAAAT
Found at i:15966234 original size:46 final size:46
Alignment explanation
Indices: 15966184--15966359 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
15966174 TGGTTGAGCA
15966184 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
15966230 TCCGAAATCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
15966275 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
15966323 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15966360 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 64 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:15966340 original size:93 final size:93
Alignment explanation
Indices: 15966181--15966351 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
15966171 GGATGGTTGA
* *
15966181 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAAATCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAAATCGTTGAGT
15966246 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* **
15966274 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAAATCGTTGAGT
15966339 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
15966352 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAAATCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:15968353 original size:3 final size:3
Alignment explanation
Indices: 15968345--15968386 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
15968335 AGGAATACTG
*
15968345 TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15968387 ATAAATAAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:15969107 original size:43 final size:43
Alignment explanation
Indices: 15968996--15969088 Score: 186
Period size: 43 Copynumber: 2.2 Consensus size: 43
15968986 AAAATTTTGT
15968996 GGCGTTTGTTGGAAAAGCGCCGCTAAAAGCCACGGCCTTTAGC
1 GGCGTTTGTTGGAAAAGCGCCGCTAAAAGCCACGGCCTTTAGC
15969039 GGCGTTTGTTGGAAAAGCGCCGCTAAAAGCCACGGCCTTTAGC
1 GGCGTTTGTTGGAAAAGCGCCGCTAAAAGCCACGGCCTTTAGC
15969082 GGCGTTT
1 GGCGTTT
15969089 TTCTGGCAGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.23
Consensus pattern (43 bp):
GGCGTTTGTTGGAAAAGCGCCGCTAAAAGCCACGGCCTTTAGC
Found at i:15969479 original size:21 final size:21
Alignment explanation
Indices: 15969466--15969562 Score: 135
Period size: 21 Copynumber: 4.6 Consensus size: 21
15969456 TCTGCTGCCA
15969466 TCGCTGCTGCCTCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
15969487 TCGCT-CGTGCCTCTGCCTCCC
1 TCGCTGC-TGCCTCTGCCTCCC
*
15969508 TCGCTGCTGCCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
15969529 TCGTTGCTG-CTACTGCCTCCC
1 TCGCTGCTGCCT-CTGCCTCCC
*
15969550 TCTCTGCTGCCTC
1 TCGCTGCTGCCTC
15969563 CGCTCTAAGT
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
20 2 0.03
21 62 0.93
22 3 0.04
ACGTcount: A:0.01, C:0.49, G:0.20, T:0.30
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:15970127 original size:26 final size:26
Alignment explanation
Indices: 15970090--15970225 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
15970080 TGATACAAAT
* *
15970090 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15970116 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
15970142 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15970168 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15970194 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15970220 TGATAA
1 TGATAA
15970226 GAATTCATGT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:15972240 original size:135 final size:137
Alignment explanation
Indices: 15971997--15972281 Score: 529
Period size: 135 Copynumber: 2.1 Consensus size: 137
15971987 TGAGTAGTCT
15971997 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
15972062 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGG-CCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
15972126 ACTGTTA
131 ACTGTTA
*
15972133 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
15972197 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
15972262 ACTGTTA
131 ACTGTTA
**
15972269 CCTGAATGGGCTT
1 CCCAAATGGGCTT
15972282 AGGCCCAATA
Statistics
Matches: 145, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
135 99 0.68
136 46 0.32
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:15976085 original size:26 final size:26
Alignment explanation
Indices: 15976048--15976182 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
15976038 TGATACAAAT
*
15976048 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15976074 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15976099 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15976125 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15976151 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15976177 TGATAA
1 TGATAA
15976183 GAATTCATGT
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
25 24 0.23
26 80 0.77
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15976103 original size:51 final size:52
Alignment explanation
Indices: 15976048--15976182 Score: 245
Period size: 51 Copynumber: 2.6 Consensus size: 52
15976038 TGATACAAAT
15976048 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
15976099 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
* *
15976151 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
15976183 GAATTCATGT
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
51 47 0.58
52 34 0.42
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:15978213 original size:135 final size:135
Alignment explanation
Indices: 15977952--15978234 Score: 507
Period size: 135 Copynumber: 2.1 Consensus size: 135
15977942 GAGTAGTCTC
15977952 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCTATGGGCCATACT
15978017 GTTATCTGAATAAGGGGCTAAGGCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACCAC
66 GTTATCTGAATAAGGGGCTAAGGCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACCAC
15978082 TGTTA
131 TGTTA
*
15978087 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGG-CTATGGGCCATAC
15978151 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCC-AGTACC
65 TGTTATCTGAATAAGGGGCTAAGG-CCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACC
15978215 ACTGTTA
129 ACTGTTA
**
15978222 CCTGAATGGGCTT
1 CCCAAATGGGCTT
15978235 AGGCCCAATA
Statistics
Matches: 143, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
134 29 0.20
135 81 0.57
136 33 0.23
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (135 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACCAC
TGTTA
Found at i:15984331 original size:9 final size:9
Alignment explanation
Indices: 15984310--15984430 Score: 63
Period size: 9 Copynumber: 13.6 Consensus size: 9
15984300 TATATATTAC
*
15984310 GTAAGTTAA
1 GTAAGTTAT
15984319 GTAAGCTT-T
1 GTAAG-TTAT
15984328 GTAAGTTAT
1 GTAAGTTAT
15984337 GTAAGTTAT
1 GTAAGTTAT
* *
15984346 GTTA-TGAT
1 GTAAGTTAT
* *
15984354 ATACATTTAT
1 GTA-AGTTAT
**
15984364 GTAAGGCAT
1 GTAAGTTAT
15984373 GTAAGTTAT
1 GTAAGTTAT
* *
15984382 GATATGATAT
1 G-TAAGTTAT
* *
15984392 AT-ATTTAT
1 GTAAGTTAT
15984400 GT-A-TTAT
1 GTAAGTTAT
*
15984407 GTAAGTTGT
1 GTAAGTTAT
15984416 GTAAGTTAT
1 GTAAGTTAT
15984425 GATAAG
1 G-TAAG
15984431 ATATATATTT
Statistics
Matches: 83, Mismatches: 21, Indels: 15
0.70 0.18 0.13
Matches are distributed among these distances:
7 6 0.07
8 12 0.14
9 48 0.58
10 17 0.20
ACGTcount: A:0.34, C:0.02, G:0.21, T:0.43
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:15984451 original size:56 final size:56
Alignment explanation
Indices: 15984384--15984615 Score: 348
Period size: 56 Copynumber: 4.2 Consensus size: 56
15984374 TAAGTTATGA
15984384 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
* *
15984440 TATGATATATATTTGGA-GTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
1 TATGATATATATTT--ATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
* * *
15984497 TATGAAATATATTTATGTATTATGTTAGTTGTGTAAGTTATGATATGATATATATT
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
* *
15984553 TATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATG-TAAG-T-TAT-TA
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
15984605 TATGATATATA
1 TATGATATATA
15984616 ATAAATATTA
Statistics
Matches: 163, Mismatches: 10, Indels: 10
0.89 0.05 0.05
Matches are distributed among these distances:
52 12 0.07
53 3 0.02
54 1 0.01
55 4 0.02
56 91 0.56
57 51 0.31
58 1 0.01
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.49
Consensus pattern (56 bp):
TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
Found at i:15984513 original size:113 final size:112
Alignment explanation
Indices: 15984384--15984594 Score: 361
Period size: 113 Copynumber: 1.9 Consensus size: 112
15984374 TAAGTTATGA
*
15984384 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
1 TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
15984449 TATTTGGA-GTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
66 TATTT--ATGTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
* *
15984497 TATGAAATATATTTATGTATTATGTTAGTTGTGTAAGTTATGATATGATATATATTTATGATATA
1 TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
*
15984562 TATTTATGTATTATGTAAGTTTTGTAAGTTATG
66 TATTTATGTATTATGTAAGTTGTGTAAGTTATG
15984595 TAAGTTATTA
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
111 1 0.01
112 25 0.27
113 67 0.72
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (112 bp):
TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
TATTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
Found at i:15984558 original size:13 final size:13
Alignment explanation
Indices: 15984540--15984569 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
15984530 TAAGTTATGA
15984540 TATGATATATATT
1 TATGATATATATT
15984553 TATGATATATATT
1 TATGATATATATT
15984566 TATG
1 TATG
15984570 TATTATGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (13 bp):
TATGATATATATT
Found at i:15984589 original size:9 final size:9
Alignment explanation
Indices: 15984572--15984602 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
15984562 TATTTATGTA
15984572 TTATGTAAG
1 TTATGTAAG
*
15984581 TTTTGTAAG
1 TTATGTAAG
15984590 TTATGTAAG
1 TTATGTAAG
15984599 TTAT
1 TTAT
15984603 TATATGATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.19, T:0.52
Consensus pattern (9 bp):
TTATGTAAG
Found at i:15985051 original size:37 final size:37
Alignment explanation
Indices: 15985007--15985097 Score: 104
Period size: 36 Copynumber: 2.5 Consensus size: 37
15984997 AAATTATATT
*
15985007 AATTGATAAATATTGAAATAT-TG-AAAT-ATATTTAA
1 AATTGATAAATATTGAAATATAAGCAAATCAT-TTTAA
15985042 AATGTTGAT-AA-A-TGAAATATAAGCAAATCATTTTAA
1 AA--TTGATAAATATTGAAATATAAGCAAATCATTTTAA
15985078 AATTGATAAATATTGAAATA
1 AATTGATAAATATTGAAATA
15985098 CATTAAAGCA
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
34 13 0.28
35 6 0.13
36 14 0.30
37 14 0.30
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.36
Consensus pattern (37 bp):
AATTGATAAATATTGAAATATAAGCAAATCATTTTAA
Found at i:15987040 original size:58 final size:59
Alignment explanation
Indices: 15986950--15987078 Score: 197
Period size: 58 Copynumber: 2.2 Consensus size: 59
15986940 TTTCAAATTG
* * ** *
15986950 GGGAGAAAGGGGTAATTATTTTAGGGTTTCGAATTAGGGAAAATGGGGG-AATAAACTA
1 GGGAGAAGGGGGTAATTATTTTAGGGATTCGAAGAAGGGAAAATGGGGGAAATAAACCA
*
15987008 GGGAGAAGGGGGTGATTATTTTAGGGATTCGAAGAAGGGAAAATGGGGGAAATAAACCA
1 GGGAGAAGGGGGTAATTATTTTAGGGATTCGAAGAAGGGAAAATGGGGGAAATAAACCA
15987067 GGGAGAAGGGGG
1 GGGAGAAGGGGG
15987079 AACTCGGTGT
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
58 44 0.69
59 20 0.31
ACGTcount: A:0.36, C:0.04, G:0.40, T:0.20
Consensus pattern (59 bp):
GGGAGAAGGGGGTAATTATTTTAGGGATTCGAAGAAGGGAAAATGGGGGAAATAAACCA
Found at i:15987565 original size:114 final size:115
Alignment explanation
Indices: 15987157--15987681 Score: 543
Period size: 114 Copynumber: 4.6 Consensus size: 115
15987147 TGTTTTCACC
* * **
15987157 TAGCGCCGCTAAAGGCAAACCAATTGTGGCGTTTTAACAT-AAACGCCACTAAAAAAACAAACAA
1 TAGCGCCGCTAAA-GCAAACCTATTGTGGCGTTTTAACCTAAAACGCCACTAAAAATCCAAACAA
* * * *
15987221 AACGACACCGTTTTGATATAAACAAATAAACTTTAGTGGCGTTT-T-TCCG
65 AACGACACCGTTTTGATATAAACAAATAACCATTAGTGGCGTTTATAACCT
* * * * * *
15987270 TAGCGCCGCTAAGGCAAATCAATTGCGGCGTTTCACCCTAAAACGCCACTAAAAATCCAAA-AAA
1 TAGCGCCGCTAAAGCAAACCTATTGTGGCGTTTTAACCTAAAACGCCACTAAAAATCCAAACAAA
* * *
15987334 ACGACGA-CGTTTTCATATGAACAGAATAA-CATTTAGTGGCGTTTTATCACC-
66 ACGAC-ACCGTTTTGATATAAACA-AATAACCA-TTAGTGGCG-TTTATAACCT
* *** * * * *
15987385 AAGCGCCGCTAAAGGCGAAA-CTATTCCAGCGTTTTACCCTAAAACGCCACTAATAAT-CGAATA
1 TAGCGCCGCTAAA-GC-AAACCTATTGTGGCGTTTTAACCTAAAACGCCACTAAAAATCCAAACA
* *
15987448 AAACTACATCGTTTTGATATAAACAAATTAACCATTAGTGGCGTTTAT-ACCT
64 AAACGACACCGTTTTGATATAAACAAA-TAACCATTAGTGGCGTTTATAACCT
* * * * *
15987500 TAGCGCCGCTAAATCAAACCTATTGTGGCGTTTGAACCAAAAATGCCACTAAAAATCCATA-AAA
1 TAGCGCCGCTAAAGCAAACCTATTGTGGCGTTTTAACCTAAAACGCCACTAAAAATCCAAACAAA
* * *
15987564 ACTACACCGTTTTGATCTAAACAAAATAACCCTTAGTGGCGTTTATAACCT
66 ACGACACCGTTTTGATATAAAC-AAATAACCATTAGTGGCGTTTATAACCT
* * *
15987615 T-GCGCCGCTAAATCAACCCTATTGTGGCGTTTTAACCTAAAACGCCACTAAAAATCCAAAGAAA
1 TAGCGCCGCTAAAGCAAACCTATTGTGGCGTTTTAACCTAAAACGCCACTAAAAATCCAAACAAA
15987679 ACG
66 ACG
15987682 GTGTCGTCTT
Statistics
Matches: 349, Mismatches: 44, Indels: 36
0.81 0.10 0.08
Matches are distributed among these distances:
112 44 0.13
113 49 0.14
114 132 0.38
115 50 0.14
116 69 0.20
117 5 0.01
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (115 bp):
TAGCGCCGCTAAAGCAAACCTATTGTGGCGTTTTAACCTAAAACGCCACTAAAAATCCAAACAAA
ACGACACCGTTTTGATATAAACAAATAACCATTAGTGGCGTTTATAACCT
Found at i:15987603 original size:230 final size:226
Alignment explanation
Indices: 15987148--15987681 Score: 608
Period size: 228 Copynumber: 2.3 Consensus size: 226
15987138 CATTTGCGGT
* *
15987148 GTTT-TCACCTAGCGCCGCTAAAGGCAAACCAATTGTGGCGTTTTAACAT-AAACGCCACTAAAA
1 GTTTATCACCTAGCGCCGCTAAAGGCAAA-CTATTGTGGCGTTTTAACCTAAAACGCCACT-AAA
* * *
15987211 AAACAAACAAAACGACACCGTTTTGATATAAACAAATAAACTTTAGTGGCGTTTTTCCGTAGCGC
64 AATCAAACAAAACGACACCGTTTTGATATAAACAAATAAACATTAGTGGCGTTTTACCGTAGCGC
* * * *
15987276 CGCTAAGGCAAATCAATTGCGGCGTTTCACCCTAAAACGCCACTAAAAATCCAAAAAAACGACGA
129 CGCTAAAGCAAACCAATTGCGGCGTTTCAACCAAAAACGCCACTAAAAATCCAAAAAAACGACGA
* * *
15987341 CGTTTTCATATGAACAGAATAACATTTAGTGGC
194 CGTTTTCATATAAACAAAATAACACTTAGTGGC
* *** * *
15987374 GTTTTATCACCAAGCGCCGCTAAAGGCGAAACTATTCCAGCGTTTTACCCTAAAACGCCACTAAT
1 G-TTTATCACCTAGCGCCGCTAAAGGC-AAACTATTGTGGCGTTTTAACCTAAAACGCCACTAAA
* * * * * *
15987439 AATCGAATAAAACTACATCGTTTTGATATAAACAAATTAACCATTAGTGGCGTTTATACCTTAGC
64 AATCAAACAAAACGACACCGTTTTGATATAAACAAA-TAAACATTAGTGGCGTTT-TACCGTAGC
* * * * * * *
15987504 GCCGCTAAATCAAACCTATTGTGGCGTTTGAACCAAAAATGCCACTAAAAATCCATAAAAACTAC
127 GCCGCTAAAGCAAACCAATTGCGGCGTTTCAACCAAAAACGCCACTAAAAATCCAAAAAAACGAC
* * *
15987569 -ACCGTTTTGATCTAAACAAAATAACCCTTAGTGGC
192 GA-CGTTTTCATATAAACAAAATAACACTTAGTGGC
* * * *
15987604 GTTTATAACCTTGCGCCGCTAAA-TCAACCCTATTGTGGCGTTTTAACCTAAAACGCCACTAAAA
1 GTTTATCACCTAGCGCCGCTAAAGGCAA-ACTATTGTGGCGTTTTAACCTAAAACGCCACTAAAA
*
15987668 ATCCAAAGAAAACG
65 AT-CAAACAAAACG
15987682 GTGTCGTCTT
Statistics
Matches: 252, Mismatches: 47, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
226 1 0.00
227 5 0.02
228 100 0.40
229 57 0.23
230 89 0.35
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.25
Consensus pattern (226 bp):
GTTTATCACCTAGCGCCGCTAAAGGCAAACTATTGTGGCGTTTTAACCTAAAACGCCACTAAAAA
TCAAACAAAACGACACCGTTTTGATATAAACAAATAAACATTAGTGGCGTTTTACCGTAGCGCCG
CTAAAGCAAACCAATTGCGGCGTTTCAACCAAAAACGCCACTAAAAATCCAAAAAAACGACGACG
TTTTCATATAAACAAAATAACACTTAGTGGC
Found at i:15988572 original size:16 final size:17
Alignment explanation
Indices: 15988551--15988583 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
15988541 ATAGTTTAGT
15988551 GTTTAGTG-TTTAGGGG
1 GTTTAGTGTTTTAGGGG
15988567 GTTTAGTGTTTTAGGGG
1 GTTTAGTGTTTTAGGGG
15988584 TTATAGATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.12, C:0.00, G:0.42, T:0.45
Consensus pattern (17 bp):
GTTTAGTGTTTTAGGGG
Found at i:15988584 original size:16 final size:16
Alignment explanation
Indices: 15988551--15988630 Score: 55
Period size: 16 Copynumber: 5.2 Consensus size: 16
15988541 ATAGTTTAGT
15988551 GTTTAGTG-TTTAGGGG
1 GTTTAGTGTTTTA-GGG
15988567 GTTTAGTGTTTTAGGG
1 GTTTAGTGTTTTAGGG
* *
15988583 G-TTA-TAG-ATTA-GT
1 GTTTAGT-GTTTTAGGG
*
15988596 GTTTATGTTTTTTA-GG
1 GTTTA-GTGTTTTAGGG
*
15988612 GTTTAGGGTTTTAGGG
1 GTTTAGTGTTTTAGGG
15988628 GTT
1 GTT
15988631 AAATGACTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
13 2 0.04
14 7 0.14
15 10 0.20
16 27 0.54
17 4 0.08
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (16 bp):
GTTTAGTGTTTTAGGG
Found at i:15988586 original size:45 final size:45
Alignment explanation
Indices: 15988524--15988631 Score: 139
Period size: 45 Copynumber: 2.4 Consensus size: 45
15988514 TGGGGTTTAA
** *
15988524 TTAGGGTTTTAAAGGTTATAGTTTAGTGTTTA-G-TGTTTAGGGGGT
1 TTAGGGTTTTAGGGGTTATAGATTAGTGTTTATGTTGTTTA--GGGT
* *
15988569 TTAGTGTTTTAGGGGTTATAGATTAGTGTTTATGTTTTTTAGGGT
1 TTAGGGTTTTAGGGGTTATAGATTAGTGTTTATGTTGTTTAGGGT
15988614 TTAGGGTTTTAGGGGTTA
1 TTAGGGTTTTAGGGGTTA
15988632 AATGACTTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
45 49 0.89
46 1 0.02
47 5 0.09
ACGTcount: A:0.19, C:0.00, G:0.32, T:0.49
Consensus pattern (45 bp):
TTAGGGTTTTAGGGGTTATAGATTAGTGTTTATGTTGTTTAGGGT
Found at i:15988683 original size:41 final size:41
Alignment explanation
Indices: 15988638--15988926 Score: 241
Period size: 41 Copynumber: 7.1 Consensus size: 41
15988628 GTTAAATGAC
* *
15988638 TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCTAAAACGCCGCTATTGCTCTGGT
* * *
15988679 TTTTAGTGGC-TTTTACAC-AAAGCGCCGCTAATT-CTTTGGT
1 TTTTAGCGGCGTTTTAC-CTAAAACGCCGCT-ATTGCTCTGGT
* * * *
15988719 TTTTAGTGGCGTTTTACC-AAAAGCGCCACTAATGCTCTGGC
1 TTTTAGCGGCGTTTTACCTAAAA-CGCCGCTATTGCTCTGGT
*** * * *
15988760 TTTTAGCGGCGTTTTTGGTAAAACGCCACTATTGCTATGTT
1 TTTTAGCGGCGTTTTACCTAAAACGCCGCTATTGCTCTGGT
* * * * * **
15988801 TTTTGGTGGCGTTTT-CTGTAAAACGCCGCTATTTCTATAAT
1 TTTTAGCGGCGTTTTAC-CTAAAACGCCGCTATTGCTCTGGT
**
15988842 TTTTAGCGGCGTTTT-GTTAAAACGCCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTTACCTAAAACGCCGCTATTGCTCTGGT
***
15988881 TTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTCTGTGT
1 TTTTAGCGGCGTTTTACCTAAAACGCCGCTATTGCTCTG-GT
15988923 TTTT
1 TTTT
15988927 CAATTTTTGC
Statistics
Matches: 206, Mismatches: 32, Indels: 19
0.80 0.12 0.07
Matches are distributed among these distances:
39 16 0.08
40 77 0.37
41 103 0.50
42 10 0.05
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCTAAAACGCCGCTATTGCTCTGGT
Found at i:15988802 original size:81 final size:80
Alignment explanation
Indices: 15988638--15988926 Score: 244
Period size: 81 Copynumber: 3.5 Consensus size: 80
15988628 GTTAAATGAC
* ** * *
15988638 TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCTGGTTTTTAGTGGC-TTTTACACAAAGC
1 TTTTAGCGGCGTTTTACC-AAAACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTGATAAAAC
*
15988702 GCCGCTAATT-CTTTGGT
65 GCCGCT-ATTGCTAT-GT
* * * *
15988719 TTTTAGTGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGCTTTTAGCGGCGTTTTTGGTAAAAC
1 TTTTAGCGGCGTTTTACCAAAA-CGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTGATAAAAC
*
15988784 GCCACTATTGCTATGTT
65 GCCGCTATTGCTATG-T
* * * * * * ** *
15988801 TTTTGGTGGCGTTTT-CTGTAAAACGCCGCTATTTCTATAATTTTTAGCGGCG-TTTTGTTAAAA
1 TTTTAGCGGCGTTTTAC--CAAAACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTGATAAAA
*
15988864 CGCCGCTATTGCTCTGT
64 CGCCGCTATTGCTATGT
*** *
15988881 TTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTCTGTGTTTTT
1 TTTTAGCGGCG-TTTTACCAAAACGCCGCTAATGCTCTG-GTTTTT
15988927 CAATTTTTGC
Statistics
Matches: 169, Mismatches: 30, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
80 32 0.19
81 80 0.47
82 53 0.31
83 4 0.02
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (80 bp):
TTTTAGCGGCGTTTTACCAAAACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTGATAAAACG
CCGCTATTGCTATGT
Found at i:15990422 original size:19 final size:19
Alignment explanation
Indices: 15990399--15990437 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
15990389 AAAAATTTGT
* *
15990399 TAAAATATAAA-AATTATA
1 TAAAAAATAAAGAAATATA
15990417 TAAAAAATAAAGAAATATA
1 TAAAAAATAAAGAAATATA
15990436 TA
1 TA
15990438 TACATAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (19 bp):
TAAAAAATAAAGAAATATA
Found at i:15990439 original size:21 final size:20
Alignment explanation
Indices: 15990400--15990546 Score: 59
Period size: 20 Copynumber: 7.0 Consensus size: 20
15990390 AAAATTTGTT
15990400 AAAATATAAAAATTATATAA
1 AAAATATAAAAATTATATAA
*
15990420 AAAATA-AAGAAATATATATAC
1 AAAATATAA-AAAT-TATATAA
* * *
15990441 ATAATTTTAAAATGTATATAATTTTTA
1 AAAATATAAAAAT-TATAT-A-----A
15990468 AAAATATAAAAA-TATA-AA
1 AAAATATAAAAATTATATAA
* *
15990486 GAAAATTTAAAAAATATATAA
1 -AAAATATAAAAATTATATAA
* *
15990507 AATAAT-GAAAAAGTATATAA
1 AA-AATATAAAAATTATATAA
* * *
15990527 ATAATCTAAATATATATATA
1 AAAATATAAAAAT-TATATA
15990547 TATATATAAA
Statistics
Matches: 96, Mismatches: 16, Indels: 29
0.68 0.11 0.21
Matches are distributed among these distances:
18 1 0.01
19 16 0.17
20 33 0.34
21 30 0.31
22 2 0.02
23 1 0.01
25 4 0.04
27 9 0.09
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (20 bp):
AAAATATAAAAATTATATAA
Found at i:15990542 original size:19 final size:18
Alignment explanation
Indices: 15990497--15990544 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
15990487 AAAATTTAAA
15990497 AAATATATA-AAATAATG
1 AAATATATATAAATAATG
* *
15990514 AAAAAGTATATAAATAATCT
1 AAATA-TATATAAATAAT-G
15990534 AAATATATATA
1 AAATATATATA
15990545 TATATATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 4 0.16
18 4 0.16
19 13 0.52
20 4 0.16
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (18 bp):
AAATATATATAAATAATG
Found at i:15993918 original size:26 final size:26
Alignment explanation
Indices: 15993889--15994000 Score: 158
Period size: 26 Copynumber: 4.3 Consensus size: 26
15993879 TGGTACAAAT
15993889 TGATAAGAGGTTAGGTAAATG-TTCAA
1 TGATAAGAGGTTAGGTAAATGTTTC-A
* *
15993915 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAGAGGTTAGGTAAATGTTTCA
15993941 TGATAATG-GGTTAGGTAAATGTTTCA
1 TGATAA-GAGGTTAGGTAAATGTTTCA
15993967 TGATAATG-GGTTAGGTAAATGTTTCA
1 TGATAA-GAGGTTAGGTAAATGTTTCA
15993993 TGATAAGA
1 TGATAAGA
15994001 ATTTCATGTC
Statistics
Matches: 79, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.01
26 76 0.96
27 2 0.03
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAAGAGGTTAGGTAAATGTTTCA
Found at i:15993945 original size:52 final size:52
Alignment explanation
Indices: 15993889--15994000 Score: 174
Period size: 52 Copynumber: 2.2 Consensus size: 52
15993879 TGGTACAAAT
15993889 TGATAAGAGGTTAGGTAAATG-TTCAATGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAGAGGTTAGGTAAATGTTTC-ATGATAATAGGTTAGGTAAATGTTCCA
* *
15993941 TGATAATG-GGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAA-GAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCA
15993993 TGATAAGA
1 TGATAAGA
15994001 ATTTCATGTC
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
51 1 0.02
52 50 0.91
53 4 0.07
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.35
Consensus pattern (52 bp):
TGATAAGAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCA
Found at i:15997467 original size:78 final size:78
Alignment explanation
Indices: 15997369--15997530 Score: 290
Period size: 78 Copynumber: 2.1 Consensus size: 78
15997359 CATGATATTC
*
15997369 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAATCC-ATTATCATGGAAC
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAA-CCTATTATCAAGGAAC
15997433 ATTTACCTAACCTA
65 ATTTACCTAACCTA
*
15997447 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCAAGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCTATTATCAAGGAACA
15997512 TTTACCTAACCTA
66 TTTACCTAACCTA
15997525 TTATCA
1 TTATCA
15997531 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
77 2 0.02
78 79 0.98
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (78 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCTATTATCAAGGAACA
TTTACCTAACCTA
Found at i:15997531 original size:26 final size:26
Alignment explanation
Indices: 15997369--15997530 Score: 254
Period size: 26 Copynumber: 6.2 Consensus size: 26
15997359 CATGATATTC
*
15997369 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
15997395 TTATCATGAAACATTTACCTAATCC-A
1 TTATCATGAAACATTTACCTAA-CCTA
*
15997421 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
15997447 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
15997473 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
15997499 TTATCAAGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
15997525 TTATCA
1 TTATCA
15997531 ATTTGTATCA
Statistics
Matches: 128, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
25 2 0.02
26 124 0.97
27 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:15998859 original size:27 final size:26
Alignment explanation
Indices: 15998755--15998869 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
15998745 TGGAGGAAGC
* *
15998755 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
*
15998782 GATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
15998809 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* **
15998836 GTATCTGGTGACTCTATCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
15998863 GTTCTGG
1 GTTCTGG
15998870 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 56 0.72
28 16 0.21
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:15998862 original size:54 final size:54
Alignment explanation
Indices: 15998755--15998869 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
15998745 TGGAGGAAGC
* *
15998755 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTACCACATATATCT
* * * *
15998809 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTATCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTACCACATATATCT
15998863 GTTCTGG
1 GTTCTGG
15998870 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTACCACATATATCT
Found at i:16000976 original size:3 final size:3
Alignment explanation
Indices: 16000968--16001198 Score: 67
Period size: 3 Copynumber: 76.7 Consensus size: 3
16000958 AATGAAAACG
* * * * * * * *
16000968 ATA ATA ATA A-A ATA TTA TTG ATA ATA ATA ATA GTA GTA AAA ATT TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
16001015 ATA ATA CTA ATG ATA ATG ATA ATA GTA TTA ATA AGA ATA TTA ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
16001063 GTA TTA ATA ATA ATG ATA ATA GTA ATA GAAA ATA AGA ATGA A-A ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA AT-A ATA ATA
** * * * *
16001109 AT- ATA GCA ATA GTA ATA A-A AGTA AAA ATA ATG ATA ATA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA
* * * * *
16001153 GTA GTA ATA AGCA GTA ATA ATA ACA ATA AT- ATAA ATA ATAA ATA AT
1 ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA AT-A ATA AT-A ATA AT
16001199 CTAAAGTTTG
Statistics
Matches: 159, Mismatches: 58, Indels: 22
0.67 0.24 0.09
Matches are distributed among these distances:
2 10 0.06
3 137 0.86
4 12 0.08
ACGTcount: A:0.57, C:0.02, G:0.10, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:16001082 original size:24 final size:25
Alignment explanation
Indices: 16001016--16001083 Score: 77
Period size: 24 Copynumber: 2.7 Consensus size: 25
16001006 AAAATTTTAA
*
16001016 TAATACTAATGATAATGATAATAGTAT
1 TAATAATAATGATAAT-AT-ATAGTAT
*
16001043 TAATAAGAAT-ATTAATAT-TAGTAT
1 TAATAATAATGA-TAATATATAGTAT
16001067 TAATAATAATGATAATA
1 TAATAATAATGATAATA
16001084 GTAATAGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
24 20 0.56
25 1 0.03
26 3 0.08
27 12 0.33
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.38
Consensus pattern (25 bp):
TAATAATAATGATAATATATAGTAT
Found at i:16001445 original size:3 final size:3
Alignment explanation
Indices: 16001439--16001538 Score: 76
Period size: 3 Copynumber: 32.7 Consensus size: 3
16001429 AAAGTAAAAA
* * * * * * * * *
16001439 AAT AAT AAT AAT AAC AGT AAT AAA AAT GAT AGT AGT GAT ATT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
16001487 AAT AAT AAT AAT AAT AAT AAT AGGA- AAT AAT AAT AAT AAT ATAT ACT
1 AAT AAT AAT AAT AAT AAT AAT A--AT AAT AAT AAT AAT AAT A-AT AAT
16001534 AAT AA
1 AAT AA
16001539 CAACAACAAT
Statistics
Matches: 76, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
2 1 0.01
3 70 0.92
4 4 0.05
5 1 0.01
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:16001641 original size:22 final size:21
Alignment explanation
Indices: 16001600--16001649 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
16001590 TAGATTACCA
**
16001600 ATAATAATAGTAAAAAAAA-T
1 ATAATAAGGGTAAAAAAAATT
16001620 ATTAATAAGGGTAATAAAAAATT
1 A-TAATAAGGGTAA-AAAAAATT
16001643 ATAATAA
1 ATAATAA
16001650 TAATAATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 1 0.04
21 10 0.40
22 12 0.48
23 2 0.08
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (21 bp):
ATAATAAGGGTAAAAAAAATT
Found at i:16006889 original size:20 final size:19
Alignment explanation
Indices: 16006865--16006919 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
16006855 ATATTTTTTT
16006865 ATAATTTTATACTTTTTAAA
1 ATAATTTTATA-TTTTTAAA
*
16006885 TTAATTTTA-ATTTTTAAA
1 ATAATTTTATATTTTTAAA
16006903 ATAATTTTTATATTTTT
1 ATAA-TTTTATATTTTT
16006920 TTGAATTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 11 0.35
19 6 0.19
20 14 0.45
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (19 bp):
ATAATTTTATATTTTTAAA
Found at i:16010299 original size:42 final size:42
Alignment explanation
Indices: 16010232--16010372 Score: 135
Period size: 42 Copynumber: 3.3 Consensus size: 42
16010222 GGTCTTGTAT
* * *
16010232 GTAATTCA-ATATCGATGCCTCTGTCCCAGACAGGGTCTTATAC
1 GTAATTCAGATA-CGATGCC-GTGTCCCAGACACGGTCTTACAC
* *
16010275 G-AATTCAGATACGATGCCGATGTCCCGGACATGGTCTTACAC
1 GTAATTCAGATACGATGCCG-TGTCCCAGACACGGTCTTACAC
* *
16010317 GTAGATTTCAAAT-CGAGGCCTGTGTCCCAGACACGGTCTTACAC
1 GTA-A-TTCAGATACGATGCC-GTGTCCCAGACACGGTCTTACAC
16010361 GATAATTCAGAT
1 G-TAATTCAGAT
16010373 CAATACAAAC
Statistics
Matches: 82, Mismatches: 9, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
42 33 0.40
43 11 0.13
44 29 0.35
45 9 0.11
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (42 bp):
GTAATTCAGATACGATGCCGTGTCCCAGACACGGTCTTACAC
Found at i:16012675 original size:17 final size:19
Alignment explanation
Indices: 16012653--16012695 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
16012643 ATGGAAATAT
16012653 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
16012670 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
16012689 AATCTTA
1 AATCTTA
16012696 GAAGATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 1 0.04
19 16 0.70
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:16012685 original size:19 final size:19
Alignment explanation
Indices: 16012661--16012697 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
16012651 ATAATCTTCA
16012661 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
16012680 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
16012698 AGATATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:16012723 original size:22 final size:22
Alignment explanation
Indices: 16012661--16012720 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 22
16012651 ATAATCTTCA
16012661 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
16012680 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
16012702 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
16012721 GATTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.43
22 8 0.23
23 12 0.34
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:16013011 original size:18 final size:17
Alignment explanation
Indices: 16012988--16013021 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16012978 GTTTCTTGAT
*
16012988 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
16013006 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
16013022 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:16021651 original size:78 final size:78
Alignment explanation
Indices: 16021522--16021716 Score: 273
Period size: 78 Copynumber: 2.5 Consensus size: 78
16021512 AAAGAAACAG
** * * * *
16021522 ATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCATATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTGTATTAGACAGAGAGCAGATCAAAGACACAGCAGATCTGACCTTCATTGAAG
16021587 CAGATCCAAGATA
66 CAGATCCAAGATA
* * *
16021600 ATTTGGCATCTCTGTATTAGACAGTGAGCATATCGAAGACACAGCAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTGTATTAGACAGAGAGCAGATCAAAGACACAGCAGATCTGACCTTCATTGAAG
*
16021665 CAGATCCAAGATG
66 CAGATCCAAGATA
* * *
16021678 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCCAAGA
1 ATTTGGCATCTCTGTATTAGACAGAGAGCAGATCAAAGA
16021717 TGATTTGGCA
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 103 1.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (78 bp):
ATTTGGCATCTCTGTATTAGACAGAGAGCAGATCAAAGACACAGCAGATCTGACCTTCATTGAAG
CAGATCCAAGATA
Found at i:16021726 original size:119 final size:123
Alignment explanation
Indices: 16021585--16021899 Score: 350
Period size: 119 Copynumber: 2.5 Consensus size: 123
16021575 CCTTCATTGA
* * *
16021585 AGCAGATCCAAGATAATTTGGCATCTCTGTATTAGACAGTGAGCATATCGAAGACACAGCAGATC
1 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACACAGCAGATC
*
16021650 TGACCTTCA-T-T-GAAGCAGATCCAAGAT-GATTTGGCATCTCTGTATTAGACGGGG
66 TGACCTTCATTATCGAAGCAGATCCAAGATAGATTTGGCATCTCTGTATTAGAAGGGG
* * * *
16021704 AGCAGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATT
1 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACACAGCAGATC
16021769 TGACCTTCATGTGTTTACATCGAAGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGAAG
66 TGACCTTCA-----TT--ATCGAAGCAGATCCAAGAT---AGATTTGGCATCTCTGTATTAGAAG
16021834 GGG
121 GGG
* ** * * *
16021837 AGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGAAACAG
1 AGCAGATCCAAGAT----GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACACAG
16021900 ATTTGGCATC
Statistics
Matches: 163, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
119 67 0.41
125 1 0.01
128 1 0.01
129 16 0.10
133 37 0.23
137 41 0.25
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (123 bp):
AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACACAGCAGATC
TGACCTTCATTATCGAAGCAGATCCAAGATAGATTTGGCATCTCTGTATTAGAAGGGG
Found at i:16021856 original size:45 final size:45
Alignment explanation
Indices: 16021718--16021991 Score: 304
Period size: 45 Copynumber: 6.1 Consensus size: 45
16021708 GATCCAAGAT
* * *
16021718 GATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAG--ATAACA
* * * * * * * *
16021765 GATTTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAAATCGAAGATAACA
* *
16021810 GATTTGGCATCTCTGTATTAGAAGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
* *
16021855 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
*
16021899 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
* * *
16021944 GATTTGGCGTCTCTGTATTAGACGGGGAGCAAATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
16021989 GAT
1 GAT
16021992 CAAAGATAGC
Statistics
Matches: 192, Mismatches: 28, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
44 47 0.24
45 114 0.59
46 3 0.02
47 23 0.12
48 4 0.02
49 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
Found at i:16021913 original size:89 final size:88
Alignment explanation
Indices: 16021677--16021983 Score: 354
Period size: 89 Copynumber: 3.5 Consensus size: 88
16021667 GATCCAAGAT
* *
16021677 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCCAAG-A-TGATTTGGCATCTTTGTATTAGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCCAAGAACAGATTTGGCATCTCTGTATTAGA
* *
16021740 CGGGGAGCAGATCGAAGACATAGCA
66 CGGGGAGCAGATCG--GAGATAACA
* * * * *
16021765 GATTTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACAGATTTGGCATCTCTGTA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCCAAGA--ACAGATTTGGCATCTCTGTA
* *
16021827 TTAGAAGGGGAGCAAATCGGAGATAACA
61 TTAGACGGGGAGCAGATCGGAGATAACA
**
16021855 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGAAACAGATTTGGCATCTCTGTATTAG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCCAAG-AACAGATTTGGCATCTCTGTATTAG
*
16021920 ACGGGGAGCAGATCGAAGATAACA
65 ACGGGGAGCAGATCGGAGATAACA
* * *
16021944 GATTTGGCGTCTCTGTATTAGACGGGGAGCAAATCAAAGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCCAAGA
16021984 TAGCAGATCA
Statistics
Matches: 183, Mismatches: 25, Indels: 22
0.80 0.11 0.10
Matches are distributed among these distances:
87 2 0.01
88 26 0.14
89 88 0.48
90 30 0.16
91 4 0.02
92 33 0.18
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26
Consensus pattern (88 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCCAAGAACAGATTTGGCATCTCTGTATTAGA
CGGGGAGCAGATCGGAGATAACA
Found at i:16021985 original size:134 final size:136
Alignment explanation
Indices: 16021661--16021991 Score: 391
Period size: 134 Copynumber: 2.5 Consensus size: 136
16021651 GACCTTCATT
* *
16021661 GAAGCAGATCCAAGAT----GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCCAAGAT---G
1 GAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATACAG
* * *
16021719 ATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACCTTCATGTGTT
66 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACATTCATGTGAT
16021784 TACATC
131 TACATC
* * **
16021790 GAAGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGAAGGGGAGCAAATCGGAGATAACA
1 GAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGAT-ACA
* *
16021855 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-A-A-CAGATTTGGCATCTC-TGT-
65 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACAT-TCATGTG
*
16021915 ATTAGA-C
129 ATTACATC
* * *
16021922 GGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAAATCAAAGATAG
1 --GAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATA-
16021987 CAGAT
63 CAGAT
16021992 CAAAGATAGC
Statistics
Matches: 173, Mismatches: 17, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
129 16 0.09
132 1 0.01
133 42 0.24
134 72 0.42
135 3 0.02
136 1 0.01
137 38 0.22
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (136 bp):
GAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATACAG
ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACATTCATGTGAT
TACATC
Found at i:16021993 original size:14 final size:14
Alignment explanation
Indices: 16021971--16022005 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
16021961 TTAGACGGGG
*
16021971 AGCAAATCAAAGAT
1 AGCAGATCAAAGAT
16021985 AGCAGATCAAAGAT
1 AGCAGATCAAAGAT
16021999 AGCAGAT
1 AGCAGAT
16022006 ATCGCCTTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.51, C:0.14, G:0.20, T:0.14
Consensus pattern (14 bp):
AGCAGATCAAAGAT
Found at i:16022381 original size:19 final size:19
Alignment explanation
Indices: 16022357--16022447 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
16022347 ATAATCTTCA
16022357 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
16022376 ATGATATGCAATCATAGAT
1 ATGATATGCAATCTTAGAT
16022395 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
16022412 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
16022430 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
16022448 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
16 1 0.01
17 14 0.21
18 15 0.22
19 37 0.55
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:16022426 original size:54 final size:53
Alignment explanation
Indices: 16022345--16022447 Score: 163
Period size: 54 Copynumber: 1.9 Consensus size: 53
16022335 TCATATGGAA
16022345 ATATAATCTTCAATGATATGCAATCTTAGATATGATATGCAATCATAGATATG
1 ATATAATCTTCAATGATATGCAATCTTAGATATGATATGCAATCATAGATATG
* *
16022398 ATATAATCTTAGATATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA
1 ATATAATCTT-CA-ATGATATGCAATCTTAGATATGATATGCAATCATAGA
16022448 AGATATGATT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
53 10 0.22
54 31 0.67
55 5 0.11
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.37
Consensus pattern (53 bp):
ATATAATCTTCAATGATATGCAATCTTAGATATGATATGCAATCATAGATATG
Found at i:16022473 original size:22 final size:22
Alignment explanation
Indices: 16022357--16022470 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
16022347 ATAATCTTCA
16022357 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
16022376 ATGATATGCAATC--A-TAGAT
1 ATGATATGCAATCTTAGAAGAT
16022395 ATGATAT--AATCTTAG---AT
1 ATGATATGCAATCTTAGAAGAT
16022412 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
16022430 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
16022452 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
16022471 GATTTAATTT
Statistics
Matches: 79, Mismatches: 2, Indels: 24
0.75 0.02 0.23
Matches are distributed among these distances:
16 1 0.01
17 11 0.14
18 13 0.16
19 34 0.43
22 8 0.10
23 12 0.15
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Done.