Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 68 of 444
Found at i:16022762 original size:18 final size:17
Alignment explanation
Indices: 16022739--16022772 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16022729 TTTCTAGGAT
*
16022739 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
16022757 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
16022773 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:16035221 original size:42 final size:42
Alignment explanation
Indices: 16035174--16035258 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
16035164 TGTAACTTAG
16035174 TTACATAATTTGAAATAAAATTTTTTATTTTTATTTTTACTC
1 TTACATAATTTGAAATAAAATTTTTTATTTTTATTTTTACTC
16035216 TTACATAATTTGAAATAAAATTTTTTATTTTTATTTTTACTC
1 TTACATAATTTGAAATAAAATTTTTTATTTTTATTTTTACTC
16035258 T
1 T
16035259 ATCTTTTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (42 bp):
TTACATAATTTGAAATAAAATTTTTTATTTTTATTTTTACTC
Found at i:16047753 original size:18 final size:20
Alignment explanation
Indices: 16047726--16047766 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
16047716 AATCTCTTGA
16047726 ATTTTATCTTT-TTAC-ATT
1 ATTTTATCTTTATTACTATT
*
16047744 ATTTTGTCTTTATTACTATT
1 ATTTTATCTTTATTACTATT
16047764 ATT
1 ATT
16047767 ACAAAAACCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 10 0.50
19 4 0.20
20 6 0.30
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (20 bp):
ATTTTATCTTTATTACTATT
Found at i:16048317 original size:17 final size:17
Alignment explanation
Indices: 16048288--16048320 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
16048278 AAATAACCTC
16048288 TTTTAGAAGTTTCAAAT
1 TTTTAGAAGTTTCAAAT
16048305 TTTTA-AAGCTTTCAAA
1 TTTTAGAAG-TTTCAAA
16048321 GGAAGCTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.45
Consensus pattern (17 bp):
TTTTAGAAGTTTCAAAT
Found at i:16051277 original size:20 final size:20
Alignment explanation
Indices: 16051234--16051312 Score: 81
Period size: 20 Copynumber: 4.0 Consensus size: 20
16051224 GACTTGTTTG
*
16051234 AAAATCATTTTGA-TGTG-TT
1 AAAATCATTTTAACT-TGATT
* *
16051253 AAAATGAATTTAACTTGATT
1 AAAATCATTTTAACTTGATT
* * *
16051273 GAAATCATTTTGACTTGGTT
1 AAAATCATTTTAACTTGATT
16051293 AAAATCATTTTAACTTGATT
1 AAAATCATTTTAACTTGATT
16051313 TTAAAATTGT
Statistics
Matches: 47, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
19 12 0.26
20 35 0.74
ACGTcount: A:0.35, C:0.08, G:0.13, T:0.44
Consensus pattern (20 bp):
AAAATCATTTTAACTTGATT
Found at i:16051284 original size:39 final size:41
Alignment explanation
Indices: 16051225--16051312 Score: 119
Period size: 40 Copynumber: 2.2 Consensus size: 41
16051215 AACAATTCTG
* *
16051225 ACTTGTTTGAAAATCATTTTGA--TGTGTTAAAATGAATTTA
1 ACTTGATTGAAAATCATTTTGACTTG-GTTAAAATCAATTTA
*
16051265 ACTTGATTG-AAATCATTTTGACTTGGTTAAAATCATTTTA
1 ACTTGATTGAAAATCATTTTGACTTGGTTAAAATCAATTTA
16051305 ACTTGATT
1 ACTTGATT
16051313 TTAAAATTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
39 12 0.28
40 29 0.67
41 2 0.05
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (41 bp):
ACTTGATTGAAAATCATTTTGACTTGGTTAAAATCAATTTA
Found at i:16059689 original size:16 final size:16
Alignment explanation
Indices: 16059668--16059701 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
16059658 ACACACCCCC
*
16059668 TTTTTCTTTTTCTTTT
1 TTTTTCTTTTTATTTT
16059684 TTTTTCTTTTTATTTT
1 TTTTTCTTTTTATTTT
16059700 TT
1 TT
16059702 CTCCTTTCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTTTCTTTTTATTTT
Found at i:16060946 original size:22 final size:24
Alignment explanation
Indices: 16060920--16060972 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
16060910 GTAGGATATG
* *
16060920 TCTGATATA-TTATGTGATAT-AC
1 TCTGATATAGCTATATGATATAAC
16060942 TCTGATA-AGCTATATGATATAAC
1 TCTGATATAGCTATATGATATAAC
16060965 TCTGATAT
1 TCTGATAT
16060973 GTTAAACAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 1 0.04
22 16 0.62
23 9 0.35
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (24 bp):
TCTGATATAGCTATATGATATAAC
Found at i:16071308 original size:13 final size:14
Alignment explanation
Indices: 16071290--16071337 Score: 57
Period size: 13 Copynumber: 3.5 Consensus size: 14
16071280 CGAAAGAAAG
16071290 AAGAAAA-AAAATA
1 AAGAAAATAAAATA
16071303 AAGAAAATAAAATA
1 AAGAAAATAAAATA
16071317 AA-AAAATGAAAA-A
1 AAGAAAAT-AAAATA
16071330 AACGAAAA
1 AA-GAAAA
16071338 CAATAACACA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
13 15 0.48
14 12 0.39
15 4 0.13
ACGTcount: A:0.81, C:0.02, G:0.08, T:0.08
Consensus pattern (14 bp):
AAGAAAATAAAATA
Found at i:16073399 original size:143 final size:142
Alignment explanation
Indices: 16073141--16073429 Score: 506
Period size: 143 Copynumber: 2.0 Consensus size: 142
16073131 TATATCACCA
* * *
16073141 CTTCAAATCAACATATTTTCCATCATCAATTTTTTTAAATTTGCATTTCATAAATATTCTCTTTC
1 CTTCAAATCAACATATTTTCCATCACCAAATTGTTTAAATTTGCATTTCATAAATATTCTCTTTC
*
16073206 ACAGTACTTATGGATACGATAACTCAACATTACTTGTCACTTTATTACTTGATACGATTCTGTAC
66 ACAGTACCTATGGATACGATAACTCAACATTACTTGTCACTTTATTACTTGATACGATTCTGTA-
16073271 ACTTGCACATTTC
130 ACTTGCACATTTC
16073284 CTTCAAATCAACATATTTTCCATCACCAAATTGTTTAAATTTGCATTTCATAAATATTCTCTTTC
1 CTTCAAATCAACATATTTTCCATCACCAAATTGTTTAAATTTGCATTTCATAAATATTCTCTTTC
* * *
16073349 ACAGTCCCTATGGATACGATAACTCGACATTAGTTGTCACTTTATTACTTGATACGATTCTGTAA
66 ACAGTACCTATGGATACGATAACTCAACATTACTTGTCACTTTATTACTTGATACGATTCTGTAA
16073414 CTTGCACATTTC
131 CTTGCACATTTC
16073426 CTTC
1 CTTC
16073430 GTTCCAAGTT
Statistics
Matches: 139, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
142 17 0.12
143 122 0.88
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (142 bp):
CTTCAAATCAACATATTTTCCATCACCAAATTGTTTAAATTTGCATTTCATAAATATTCTCTTTC
ACAGTACCTATGGATACGATAACTCAACATTACTTGTCACTTTATTACTTGATACGATTCTGTAA
CTTGCACATTTC
Found at i:16082842 original size:17 final size:17
Alignment explanation
Indices: 16082822--16082873 Score: 104
Period size: 17 Copynumber: 3.1 Consensus size: 17
16082812 GGGCCTACAA
16082822 GCCCATGTGGCCCACAC
1 GCCCATGTGGCCCACAC
16082839 GCCCATGTGGCCCACAC
1 GCCCATGTGGCCCACAC
16082856 GCCCATGTGGCCCACAC
1 GCCCATGTGGCCCACAC
16082873 G
1 G
16082874 GCCTAAATCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 35 1.00
ACGTcount: A:0.17, C:0.46, G:0.25, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:16084742 original size:51 final size:51
Alignment explanation
Indices: 16084656--16084764 Score: 182
Period size: 51 Copynumber: 2.1 Consensus size: 51
16084646 TGAAATTTTA
* * *
16084656 TGTGCTCGCAAGCTTGACTTAGTGAGTTACAAATACATTTAGTATAGCAAT
1 TGTGATCGCAAGCTTGACTCAGTGAGTTACAAATACATTCAGTATAGCAAT
*
16084707 TGTGATCGCAAGCTTGACTCAGTGAGTTACCAATACATTCAGTATAGCAAT
1 TGTGATCGCAAGCTTGACTCAGTGAGTTACAAATACATTCAGTATAGCAAT
16084758 TGTGATC
1 TGTGATC
16084765 CTTACTCTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (51 bp):
TGTGATCGCAAGCTTGACTCAGTGAGTTACAAATACATTCAGTATAGCAAT
Found at i:16085243 original size:12 final size:13
Alignment explanation
Indices: 16085219--16085260 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
16085209 GAAAGGATTA
16085219 TTAATACTTTAAAG
1 TTAATA-TTTAAAG
*
16085233 TTAAT-TTTAAAA
1 TTAATATTTAAAG
16085245 TTAATATTTAATAG
1 TTAATATTTAA-AG
16085259 TT
1 TT
16085261 GAAATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 11 0.46
13 5 0.21
14 8 0.33
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (13 bp):
TTAATATTTAAAG
Found at i:16085268 original size:26 final size:26
Alignment explanation
Indices: 16085218--16085272 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
16085208 GGAAAGGATT
*
16085218 ATTAATACTTTAAAGTTAATTTTAAA
1 ATTAATACTTTAAAGTTAATATTAAA
16085244 ATTAATA-TTTAATAGTTGAA-ATTAAA
1 ATTAATACTTTAA-AGTT-AATATTAAA
16085270 ATT
1 ATT
16085273 TAAAAAATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 5 0.19
26 19 0.73
27 2 0.08
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.45
Consensus pattern (26 bp):
ATTAATACTTTAAAGTTAATATTAAA
Found at i:16087654 original size:29 final size:29
Alignment explanation
Indices: 16087594--16087658 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 29
16087584 TTCTATTTAT
* *
16087594 GTTTAGGGTTTTTGAGTTTGGAGATTTTG
1 GTTTAGGGTTGTTGAATTTGGAGATTTTG
*
16087623 GTTTA-GGTTGTTGAATTTGGGGATTTTG
1 GTTTAGGGTTGTTGAATTTGGAGATTTTG
*
16087651 GGTTAGGG
1 GTTTAGGG
16087659 ATTTTTGGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 24 0.77
29 7 0.23
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.48
Consensus pattern (29 bp):
GTTTAGGGTTGTTGAATTTGGAGATTTTG
Found at i:16087661 original size:14 final size:14
Alignment explanation
Indices: 16087642--16087678 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
16087632 GTTGAATTTG
16087642 GGGATTTTGGGTTA
1 GGGATTTTGGGTTA
*
16087656 GGGATTTTTGGTTA
1 GGGATTTTGGGTTA
*
16087670 GGGCTTTTG
1 GGGATTTTG
16087679 ATTTTGGGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.11, C:0.03, G:0.41, T:0.46
Consensus pattern (14 bp):
GGGATTTTGGGTTA
Found at i:16090881 original size:15 final size:15
Alignment explanation
Indices: 16090861--16090892 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
16090851 ATGAAGCTAA
16090861 GGAGATACAAAGAAG
1 GGAGATACAAAGAAG
16090876 GGAGATACAAAGAAG
1 GGAGATACAAAGAAG
16090891 GG
1 GG
16090893 TAGCTTTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.06, G:0.38, T:0.06
Consensus pattern (15 bp):
GGAGATACAAAGAAG
Found at i:16091411 original size:31 final size:31
Alignment explanation
Indices: 16091376--16091447 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
16091366 AAGATAAATA
*
16091376 ATGCTATTTATTTTTCACCAATTTATTACTG
1 ATGCTATTTATTTTGCACCAATTTATTACTG
*
16091407 ATGCTATTTGTTTTGCACCAATTTATTACTG
1 ATGCTATTTATTTTGCACCAATTTATTACTG
16091438 ATG-T-TTTATT
1 ATGCTATTTATT
16091448 ATGTTTTGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 5 0.13
30 1 0.03
31 32 0.84
ACGTcount: A:0.24, C:0.14, G:0.10, T:0.53
Consensus pattern (31 bp):
ATGCTATTTATTTTGCACCAATTTATTACTG
Found at i:16091971 original size:28 final size:30
Alignment explanation
Indices: 16091927--16091989 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 30
16091917 ATGATAGCAA
16091927 GAATGAAGGTTTCGATTCGAAGATGATTT-
1 GAATGAAGGTTTCGATTCGAAGATGATTTG
*
16091956 GAATGAA-GTTTTGATTCGAAGATGATTTG
1 GAATGAAGGTTTCGATTCGAAGATGATTTG
16091985 GAATG
1 GAATG
16091990 GGGAAAATGG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 20 0.62
29 12 0.38
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.35
Consensus pattern (30 bp):
GAATGAAGGTTTCGATTCGAAGATGATTTG
Found at i:16092699 original size:159 final size:158
Alignment explanation
Indices: 16092384--16092703 Score: 478
Period size: 159 Copynumber: 2.0 Consensus size: 158
16092374 GGTGAGGGTC
* * * *
16092384 ACAACATAAGATCATGCCTTCAACCTAACACAACTGGATCACAGATATATCGTAAACACTTTTTT
1 ACAACAGAAGACCATGCATTCAACCTAACACAACTGGATCACAGATATATCATAAACACTTTTTT
* * *
16092449 ACTATCAAGTTTTGAAATATTTAAGTCTAATTTGGGGTTGTGATTTTTTTGTCTTAGTCTAGTAC
66 ACTATCAAATTTTGAAATATTTAAATCTAATTTGGGGTTGTAATTTTTTTGTCTTAGTCTAGTAC
16092514 AAGTACAAGAACTAAAAGCTAAAAAAAGA
131 AAGTACAAGAACTAAAAGC-AAAAAAAGA
* *
16092543 ACAACAGAAGACCATGCATTCAGCCTAACACAACTGGATCACAGTTATATCATAAACACTTTTTT
1 ACAACAGAAGACCATGCATTCAACCTAACACAACTGGATCACAGATATATCATAAACACTTTTTT
* *
16092608 ACTGTCAAATTTTGAAATATTTAAATCTAATTTGGGGTTTTAATTTTTTTTTGTCTTAGTCTAGT
66 ACTATCAAATTTTGAAATATTTAAATCTAATTTGGGGTTGTAA--TTTTTTTGTCTTAGTCTAGT
* * *
16092673 ACGAGTACAGGAACTAGAAGCCAAAAAAAGA
129 ACAAGTACAAGAACTAAAAG-CAAAAAAAGA
16092704 TGGTATATCA
Statistics
Matches: 144, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
159 97 0.67
161 46 0.32
162 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (158 bp):
ACAACAGAAGACCATGCATTCAACCTAACACAACTGGATCACAGATATATCATAAACACTTTTTT
ACTATCAAATTTTGAAATATTTAAATCTAATTTGGGGTTGTAATTTTTTTGTCTTAGTCTAGTAC
AAGTACAAGAACTAAAAGCAAAAAAAGA
Found at i:16097752 original size:9 final size:9
Alignment explanation
Indices: 16097727--16097757 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
16097717 AATTTGTGAA
16097727 AAATAAAAT
1 AAATAAAAT
16097736 AGAATAAAAT
1 A-AATAAAAT
16097746 AAATAAAAT
1 AAATAAAAT
16097755 AAA
1 AAA
16097758 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:16106466 original size:29 final size:29
Alignment explanation
Indices: 16106434--16106494 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
16106424 AAAGTTCAGC
*
16106434 TAATTTTGTTAATACTAGTTCGGTTCGGT
1 TAATTTGGTTAATACTAGTTCGGTTCGGT
* *
16106463 TAATTTGGTTAATATTAGTTTGGTTCGGT
1 TAATTTGGTTAATACTAGTTCGGTTCGGT
16106492 TAA
1 TAA
16106495 CCGTTTGAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.23, C:0.07, G:0.21, T:0.49
Consensus pattern (29 bp):
TAATTTGGTTAATACTAGTTCGGTTCGGT
Found at i:16106865 original size:29 final size:29
Alignment explanation
Indices: 16106833--16106898 Score: 123
Period size: 29 Copynumber: 2.3 Consensus size: 29
16106823 TAATTTCAAA
16106833 GTATAAAATAGTATCTAAGTATTAATTAC
1 GTATAAAATAGTATCTAAGTATTAATTAC
16106862 GTATAAAATAGTATCTAAGTATTAATTAC
1 GTATAAAATAGTATCTAAGTATTAATTAC
*
16106891 GTAAAAAA
1 GTATAAAA
16106899 ACATAAACTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.35
Consensus pattern (29 bp):
GTATAAAATAGTATCTAAGTATTAATTAC
Found at i:16107009 original size:52 final size:52
Alignment explanation
Indices: 16106952--16107056 Score: 183
Period size: 52 Copynumber: 2.0 Consensus size: 52
16106942 TTTTTTCGTG
*
16106952 TAGAGTTGGATTATATAATGAAAGTAGATAAGAAGTGTGATGTTTACAGTTT
1 TAGAGTTGGATTATATAATGAAAGCAGATAAGAAGTGTGATGTTTACAGTTT
* *
16107004 TAGAGTTGGATTATATAATGAAAGCAGATGAGAAGTGTGGTGTTTACAGTTT
1 TAGAGTTGGATTATATAATGAAAGCAGATAAGAAGTGTGATGTTTACAGTTT
16107056 T
1 T
16107057 GGGGTGTTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (52 bp):
TAGAGTTGGATTATATAATGAAAGCAGATAAGAAGTGTGATGTTTACAGTTT
Found at i:16107996 original size:127 final size:127
Alignment explanation
Indices: 16107811--16108312 Score: 729
Period size: 127 Copynumber: 4.0 Consensus size: 127
16107801 TTTTTATTGA
* * * * * * *
16107811 AGAAAACGTAGACGGAATTTTAAAAGGATATTTGATTATTTGGATAAACAGAAA-ATCAAAACCC
1 AGAAAATGTGGACGAAATTTTAAAGGGAAATTTGATTATTTAGACAAAC-GAAAGATCAAAACCC
* * * * * * * *
16107875 AGCACGCTAGGGTACGATTTCC-CGTATTCCCAAACATCAATCATTGCCTTTGTTTTAAAATTT
65 AGCACGTTAGGGCACGA-TCCCTCGAATTTCTAAACATCAATCATCGCCTTTGTTTTAAAGTTT
*
16107938 AGAAAATTTGGACGAAATTTTAAAGGGAAATTTGATTATTTAGACAAACGAAAGATCAAAACCCA
1 AGAAAATGTGGACGAAATTTTAAAGGGAAATTTGATTATTTAGACAAACGAAAGATCAAAACCCA
* * * *
16108003 GCACGTTAGGGCACGGTCCCTCGAATTTCTGAACATCAATCATCACCTTTATTTTAAAGTTT
66 GCACGTTAGGGCACGATCCCTCGAATTTCTAAACATCAATCATCGCCTTTGTTTTAAAGTTT
* *
16108065 AGAAAATGTGGACAAAATTTTAAAGGGAAATTTGATTATTTAGACAAACGAAAGATCGAAACCCA
1 AGAAAATGTGGACGAAATTTTAAAGGGAAATTTGATTATTTAGACAAACGAAAGATCAAAACCCA
16108130 GCACGTTAGGGCACGATCCCTCGAATTTCTAAACATCAATCATCGCCTTTGTTTTAAAGTTT
66 GCACGTTAGGGCACGATCCCTCGAATTTCTAAACATCAATCATCGCCTTTGTTTTAAAGTTT
* * * *
16108192 AGAAAACGCGGACGAAATTTTAAAGGGAAATTTAATTATTTAGACAAACGAAAGATCGAAACCCA
1 AGAAAATGTGGACGAAATTTTAAAGGGAAATTTGATTATTTAGACAAACGAAAGATCAAAACCCA
*
16108257 GCACGTTAGGGCACGATCCCTCGAATTTCTAAACATCAAACATCGCCTTTGTTTTA
66 GCACGTTAGGGCACGATCCCTCGAATTTCTAAACATCAATCATCGCCTTTGTTTTA
16108313 TAAAGTCGAC
Statistics
Matches: 341, Mismatches: 32, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
126 7 0.02
127 334 0.98
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (127 bp):
AGAAAATGTGGACGAAATTTTAAAGGGAAATTTGATTATTTAGACAAACGAAAGATCAAAACCCA
GCACGTTAGGGCACGATCCCTCGAATTTCTAAACATCAATCATCGCCTTTGTTTTAAAGTTT
Found at i:16110021 original size:14 final size:14
Alignment explanation
Indices: 16110002--16110051 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
16109992 TGCATAAAGA
16110002 AAATTTTAAAATAG
1 AAATTTTAAAATAG
* *
16110016 AAATTTT-ACATAAC
1 AAATTTTAAAAT-AG
16110030 AAATTTTAAAATAG
1 AAATTTTAAAATAG
16110044 AAATTTTA
1 AAATTTTA
16110052 CATAACAACT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 3 0.10
14 24 0.80
15 3 0.10
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (14 bp):
AAATTTTAAAATAG
Found at i:16110035 original size:28 final size:28
Alignment explanation
Indices: 16110002--16110059 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
16109992 TGCATAAAGA
16110002 AAATTTTAAAATAGAAATTTTACATAAC
1 AAATTTTAAAATAGAAATTTTACATAAC
16110030 AAATTTTAAAATAGAAATTTTACATAAC
1 AAATTTTAAAATAGAAATTTTACATAAC
16110058 AA
1 AA
16110060 CTTTAAGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.34
Consensus pattern (28 bp):
AAATTTTAAAATAGAAATTTTACATAAC
Found at i:16113331 original size:44 final size:43
Alignment explanation
Indices: 16113166--16113683 Score: 284
Period size: 45 Copynumber: 11.9 Consensus size: 43
16113156 AATTAGTAAC
* * * * *
16113166 TTCAACCTGCTCTACTGCAACTTTAGGGAGATAAG-CTTAATGGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GT-GT
* * * * **
16113210 TTCAATCTACTCCATTGCAACTTTAGGGAGATAAGATTTGCCAT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TGT
* * * * *
16113254 CTTCAGTCTACTCCACTGTAACTTTAGGAAGATAAGACTTGTGAT
1 -TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTG-T
* * *
16113299 TTCAACCTGCTCCACCGCAACTTCAGGGAGATAAG-GTT-TGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGT
** * * ** **
16113340 TTTGATCTGCTCTACTACAACTTCAAAGAGATAAGA-TTCGCCAT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-G-TGT
* ** * *
16113384 CTTCAATCTACTCTGCTGTAACTTCAGGGAGATAAAACTTGTGGCT
1 -TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT-G-T
* * * *
16113430 TT-AACCTGCTCCACTACAACTTCAAGGAGATAAG-GTT-TGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGT
** * * * * * *
16113470 TTTGATCTGCTCTACTACAATTTCAGAGAGATAAGATCATCTGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGTGT
* *
16113514 CTTCAGTCTGCTCCTCTGCAACTTCAGGGAGATAAGACTTGTGGCT
1 -TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT-G-T
* * * *
16113560 TT-AACCTGCTCCACTGCAACTTTAGGGAGTTAAG-GTT-TGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGT
** * * *
16113600 TTTGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCATCTGT-T
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-C-T-TGTGT
* * *
16113645 TTCAGTTTGCTCCTCTGCAACTTCAGGGAGATAAGACTT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT
16113684 TTGGCTTTAA
Statistics
Matches: 357, Mismatches: 92, Indels: 52
0.71 0.18 0.10
Matches are distributed among these distances:
40 6 0.02
41 85 0.24
42 5 0.01
43 8 0.02
44 119 0.33
45 129 0.36
46 5 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (43 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGT
Found at i:16113403 original size:130 final size:129
Alignment explanation
Indices: 16113227--16113695 Score: 575
Period size: 130 Copynumber: 3.6 Consensus size: 129
16113217 TACTCCATTG
* * * * * *
16113227 CAACTTTAGGGAGATAAGATTTGCCATCTTCAGTCTACTCCACTGTAACTTTAGGAAGATAAGAC
1 CAACTTCAGAGAGATAAGATTCGCCATCTTCAGTCTACT-CTCTGTAACTTCAGGGAGATAAGAC
* *
16113292 TTGT-GATTTCAACCTGCTCCACCGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTACT
65 TTGTGGCTTT-AACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTACT
16113356 A
129 A
* * *
16113357 CAACTTCAAAGAGATAAGATTCGCCATCTTCAATCTACTCTGCTGTAACTTCAGGGAGATAAAAC
1 CAACTTCAGAGAGATAAGATTCGCCATCTTCAGTCTACTCT-CTGTAACTTCAGGGAGATAAGAC
* *
16113422 TTGTGGCTTTAACCTGCTCCACTACAACTTCAAGGAGATAAGGTTTGTTTTGATCTGCTCTACTA
65 TTGTGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTACTA
* * ** * *
16113487 CAATTTCAGAGAGATAAGA-TCATCTGTCTTCAGTCTGCTCCTCTGCAACTTCAGGGAGATAAGA
1 CAACTTCAGAGAGATAAGATTC-GCCATCTTCAGTCTACT-CTCTGTAACTTCAGGGAGATAAGA
* *
16113551 CTTGTGGCTTTAACCTGCTCCACTGCAACTTTAGGGAGTTAAGGTTTGTTTTGATCTGCTCTACT
64 CTTGTGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTACT
*
16113616 G
129 A
* * ** * * * *
16113617 CAACTTTAGAGAGATAAGA-TCATCTGTTTTCAGTTTGCTCCTCTGCAACTTCAGGGAGATAAGA
1 CAACTTCAGAGAGATAAGATTC-GCCATCTTCAGTCTACT-CTCTGTAACTTCAGGGAGATAAGA
*
16113681 CTTTTGGCTTTAACC
64 CTTGTGGCTTTAACC
16113696 GATGTTGCTA
Statistics
Matches: 303, Mismatches: 32, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
129 3 0.01
130 294 0.97
131 6 0.02
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (129 bp):
CAACTTCAGAGAGATAAGATTCGCCATCTTCAGTCTACTCTCTGTAACTTCAGGGAGATAAGACT
TGTGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTACTA
Found at i:16113663 original size:45 final size:45
Alignment explanation
Indices: 16113435--16113680 Score: 183
Period size: 41 Copynumber: 5.7 Consensus size: 45
16113425 TGGCTTTAAC
* * * * *
16113435 CTGCTCCACTACAACTTCAAGGAGATAAGGT--T-TGTTTTGA-T
1 CTGCTCCTCTGCAACTTCAGGGAGATAAGATCATCTGTTTTCAGT
* * * *
16113476 CTGCT-CTACTACAATTTCAGAGAGATAAGATCATCTGTCTTCAGT
1 CTGCTCCT-CTGCAACTTCAGGGAGATAAGATCATCTGTTTTCAGT
* * * **
16113521 CTGCTCCTCTGCAACTTCAGGGAGATAAGA-CTTGTGGCTTT-AAC
1 CTGCTCCTCTGCAACTTCAGGGAGATAAGATCATCT-GTTTTCAGT
* * * * *
16113565 CTGCTCCACTGCAACTTTAGGGAGTTAAGGT--T-TGTTTTGA-T
1 CTGCTCCTCTGCAACTTCAGGGAGATAAGATCATCTGTTTTCAGT
* *
16113606 CTGCT-CTACTGCAACTTTAGAGAGATAAGATCATCTGTTTTCAGT
1 CTGCTCCT-CTGCAACTTCAGGGAGATAAGATCATCTGTTTTCAGT
*
16113651 TTGCTCCTCTGCAACTTCAGGGAGATAAGA
1 CTGCTCCTCTGCAACTTCAGGGAGATAAGA
16113681 CTTTTGGCTT
Statistics
Matches: 160, Mismatches: 30, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
40 2 0.01
41 53 0.33
42 2 0.01
43 3 0.02
44 43 0.27
45 53 0.33
46 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33
Consensus pattern (45 bp):
CTGCTCCTCTGCAACTTCAGGGAGATAAGATCATCTGTTTTCAGT
Found at i:16124870 original size:127 final size:126
Alignment explanation
Indices: 16124718--16125080 Score: 396
Period size: 127 Copynumber: 2.9 Consensus size: 126
16124708 GCATTTAAAA
* ** * *
16124718 AAATTTTAAAAGGATATCCGGTTATTCAGTCAAACGATAAATTGAAACCCAGCACGTTAGGGCAC
1 AAATTTTAAAGGGATATTTGATTATTTAGTCAAACGA-AAATTGAAACCCAGCACGTTAGGGCAC
** *
16124783 GATTTCTCGAATTTCTAAACA-CAAAAT-ATTACCTTAT-TTTT-TTATTGAAGAAAATGTGGAC
65 GATTTCTCGAATTTCTAAACATC--AATCATTACCTT-TGTTTTAAAATT-AAGAAAACGTGGA-
16124844 AG
125 AG
*
16124846 -AATTTTAAAGGGATATTTGATTATTTGGAT-AAACAGAAAATTGAAACCCAGCACGTTAGGGCA
1 AAATTTTAAAGGGATATTTGATTATTTAG-TCAAAC-GAAAATTGAAACCCAGCACGTTAGGGCA
* * * * * *
16124909 CGATTTCCCGAATTCCCAAACATCAATCATTGCCTTTGTTTTAAAATTTAGAAAACGTGGATG
64 CGATTTCTCGAATTTCTAAACATCAATCATTACCTTTGTTTTAAAATTAAGAAAACGTGGAAG
* * *
16124972 AAATTTTAAAGGGAAATTTGATTATTTAGACAAACGAAAGATCGAAACCCAGCACGTTAGGGCAC
1 AAATTTTAAAGGGATATTTGATTATTTAGTCAAACGAAA-ATTGAAACCCAGCACGTTAGGGCAC
** * **
16125037 GATCCCTCAAATTTCTAAACATCAATCATCGCCTTTGTTTTAAA
65 GATTTCTCGAATTTCTAAACATCAATCATTACCTTTGTTTTAAA
16125081 GTTTATGTTA
Statistics
Matches: 200, Mismatches: 26, Indels: 19
0.82 0.11 0.08
Matches are distributed among these distances:
126 9 0.05
127 184 0.92
128 7 0.04
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (126 bp):
AAATTTTAAAGGGATATTTGATTATTTAGTCAAACGAAAATTGAAACCCAGCACGTTAGGGCACG
ATTTCTCGAATTTCTAAACATCAATCATTACCTTTGTTTTAAAATTAAGAAAACGTGGAAG
Found at i:16127690 original size:127 final size:127
Alignment explanation
Indices: 16127483--16127716 Score: 432
Period size: 127 Copynumber: 1.8 Consensus size: 127
16127473 AATGCAGATG
* *
16127483 AAATTTTAAAGGGAAATTTGATTGTTTAGACAAACGAAAGATCCAAACCCAGCACGTTAGGGCAC
1 AAATTTTAAAGGGAAATTTGATTATTTAGACAAACAAAAGATCCAAACCCAGCACGTTAGGGCAC
*
16127548 GATCCCTCGAATTTCTAAACATCAATCATCGCCTTTGTTTTAAAGTTTAGAAAACACAGACA
66 GATCCCTCGAATTTCTAAACATCAAACATCGCCTTTGTTTTAAAGTTTAGAAAACACAGACA
*
16127610 AAATTTTAAAGGGAAATTTGATTATTTAGACAAACAAAAGATCGAAACCCAGCACGTTAGGGCAC
1 AAATTTTAAAGGGAAATTTGATTATTTAGACAAACAAAAGATCCAAACCCAGCACGTTAGGGCAC
16127675 GATCCCTCGAATTTCTAAACATCAAACATCGCCTTTGTTTTA
66 GATCCCTCGAATTTCTAAACATCAAACATCGCCTTTGTTTTA
16127717 TAAAGTCGAC
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
127 103 1.00
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (127 bp):
AAATTTTAAAGGGAAATTTGATTATTTAGACAAACAAAAGATCCAAACCCAGCACGTTAGGGCAC
GATCCCTCGAATTTCTAAACATCAAACATCGCCTTTGTTTTAAAGTTTAGAAAACACAGACA
Found at i:16130951 original size:19 final size:19
Alignment explanation
Indices: 16130927--16130964 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
16130917 GAAATGAATA
*
16130927 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
16130946 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
16130965 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:16132129 original size:30 final size:30
Alignment explanation
Indices: 16132090--16132202 Score: 190
Period size: 30 Copynumber: 3.8 Consensus size: 30
16132080 TGATGGTGTC
16132090 GGTGCAAGTGGGAGACAAGGTGGTGGAGTA
1 GGTGCAAGTGGGAGACAAGGTGGTGGAGTA
* *
16132120 GGTGTAAGTGGGAGGCAAGGTGGTGGAGTA
1 GGTGCAAGTGGGAGACAAGGTGGTGGAGTA
16132150 GGTGCAAGTGGGAGACAAGGTGGTGGAGTA
1 GGTGCAAGTGGGAGACAAGGTGGTGGAGTA
* *
16132180 AGTGCAAGTGGGAGGCAAGGTGG
1 GGTGCAAGTGGGAGACAAGGTGG
16132203 CTAAGGTTTT
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 77 1.00
ACGTcount: A:0.26, C:0.06, G:0.51, T:0.17
Consensus pattern (30 bp):
GGTGCAAGTGGGAGACAAGGTGGTGGAGTA
Found at i:16132804 original size:133 final size:133
Alignment explanation
Indices: 16132595--16133176 Score: 918
Period size: 133 Copynumber: 4.4 Consensus size: 133
16132585 TAGGGAGATA
* * *
16132595 AGATTTGCTGTCTTCGATCTGCTCCACTGCAAT-TTCAGGGAAACAAGATTTACAATCTTTAGCC
1 AGATTTGCCGTCTTCGATCTGCTCCACTGCAATCTT-AGGGAAACAAGATCTACAATCTTCAGCC
* **
16132659 TACTCCACTACAACTTTAGGGAGCTAGGATAGTGGTTTAAATCTGCTTCACTGCAACATCAGGAA
65 TACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGGAA
*
16132724 GCTT
130 GCCT
* * * *
16132728 AGATTCGCCGTCTTCGATCTACTCCACTACAATCTTAGGGAAATAAGATCTACAATCTTCAGCCT
1 AGATTTGCCGTCTTCGATCTGCTCCACTGCAATCTTAGGGAAACAAGATCTACAATCTTCAGCCT
16132793 ACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGGAAG
66 ACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGGAAG
16132858 CCT
131 CCT
* * * *
16132861 AGATTCGCCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATTTTCAACCT
1 AGATTTGCCGTCTTCGATCTGCTCCACTGCAATCTTAGGGAAACAAGATCTACAATCTTCAGCCT
** *
16132926 ACTCCACTACAACTTTAGGGAGCTAGGATGGTGGTTTAAAT-TACTTCACTGCAACATCAGGAAG
66 ACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGGAAG
16132990 CCT
131 CCT
* * *
16132993 AGATTTGCCGTCTTCGATATGCTCCACTGCAATCTCAGGGAAATAAGATCTACAATCTTCAGCCT
1 AGATTTGCCGTCTTCGATCTGCTCCACTGCAATCTTAGGGAAACAAGATCTACAATCTTCAGCCT
16133058 ACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGGAAG
66 ACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGGAAG
16133123 CCT
131 CCT
* *
16133126 AGATTTGCCGTCTTCGATCTACTCCACTACAAT-TTCAGGGAAACAAGATCT
1 AGATTTGCCGTCTTCGATCTGCTCCACTGCAATCTT-AGGGAAACAAGATCT
16133177 GTAGGATTCA
Statistics
Matches: 413, Mismatches: 33, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
132 125 0.30
133 286 0.69
134 2 0.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (133 bp):
AGATTTGCCGTCTTCGATCTGCTCCACTGCAATCTTAGGGAAACAAGATCTACAATCTTCAGCCT
ACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGGAAG
CCT
Found at i:16133083 original size:265 final size:266
Alignment explanation
Indices: 16132595--16133176 Score: 1006
Period size: 265 Copynumber: 2.2 Consensus size: 266
16132585 TAGGGAGATA
* * *
16132595 AGATTTGCTGTCTTCGATCTGCTCCACTGCAATTTCAGGGAAACAAGATTTACAATCTTTAGCCT
1 AGATTTGCCGTCTTCGATCTGCTCCACTGCAATTTCAGGGAAACAAGATCTACAATCTTTAACCT
*
16132660 ACTCCACTACAACTTTAGGGAGCTAGGATAGTGGTTTAAATCTGCTTCACTGCAACATCAGGAAG
66 ACTCCACTACAACTTTAGGGAGCTAGGATAGTGGTTTAAATCTACTTCACTGCAACATCAGGAAG
* * *
16132725 CTTAGATTCGCCGTCTTCGATCTACTCCACTACAATCTTAGGGAAATAAGATCTACAATCTTCAG
131 CCTAGATTCGCCGTCTTCGATATACTCCACTACAATCTCAGGGAAATAAGATCTACAATCTTCAG
16132790 CCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGG
196 CCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGG
16132855 AAGCCT
261 AAGCCT
* *
16132861 AGATTCGCCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAAT-TTTCAACC
1 AGATTTGCCGTCTTCGATCTGCTCCACTGCAATTTCAGGGAAACAAGATCTACAATCTTT-AACC
*
16132925 TACTCCACTACAACTTTAGGGAGCTAGGATGGTGGTTTAAAT-TACTTCACTGCAACATCAGGAA
65 TACTCCACTACAACTTTAGGGAGCTAGGATAGTGGTTTAAATCTACTTCACTGCAACATCAGGAA
* * *
16132989 GCCTAGATTTGCCGTCTTCGATATGCTCCACTGCAATCTCAGGGAAATAAGATCTACAATCTTCA
130 GCCTAGATTCGCCGTCTTCGATATACTCCACTACAATCTCAGGGAAATAAGATCTACAATCTTCA
16133054 GCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAG
195 GCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAG
16133119 GAAGCCT
260 GAAGCCT
* *
16133126 AGATTTGCCGTCTTCGATCTACTCCACTACAATTTCAGGGAAACAAGATCT
1 AGATTTGCCGTCTTCGATCTGCTCCACTGCAATTTCAGGGAAACAAGATCT
16133177 GTAGGATTCA
Statistics
Matches: 298, Mismatches: 17, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
265 202 0.68
266 96 0.32
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (266 bp):
AGATTTGCCGTCTTCGATCTGCTCCACTGCAATTTCAGGGAAACAAGATCTACAATCTTTAACCT
ACTCCACTACAACTTTAGGGAGCTAGGATAGTGGTTTAAATCTACTTCACTGCAACATCAGGAAG
CCTAGATTCGCCGTCTTCGATATACTCCACTACAATCTCAGGGAAATAAGATCTACAATCTTCAG
CCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGG
AAGCCT
Found at i:16134074 original size:16 final size:16
Alignment explanation
Indices: 16134055--16134088 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
16134045 ATAACACTTG
16134055 AAATAATAAACACCCT
1 AAATAATAAACACCCT
* *
16134071 AAATAGTAAATACCCT
1 AAATAATAAACACCCT
16134087 AA
1 AA
16134089 CTATCAGACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.21, G:0.03, T:0.21
Consensus pattern (16 bp):
AAATAATAAACACCCT
Found at i:16134412 original size:17 final size:15
Alignment explanation
Indices: 16134390--16134428 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
16134380 TATGTATTAT
16134390 TAATATAACATATGATA
1 TAATATAACATA--ATA
*
16134407 TAATATTACATAATA
1 TAATATAACATAATA
16134422 TAATATA
1 TAATATA
16134429 TTTTATAGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 9 0.45
17 11 0.55
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (15 bp):
TAATATAACATAATA
Found at i:16137169 original size:19 final size:19
Alignment explanation
Indices: 16137145--16137182 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
16137135 GAAATGAATA
*
16137145 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
16137164 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
16137183 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:16138379 original size:15 final size:16
Alignment explanation
Indices: 16138346--16138387 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
16138336 GAGGTTAGGT
*
16138346 TTTTTTCTTTTCTTCA
1 TTTTTTATTTTCTTCA
*
16138362 TTTTTTATTTT-TTTA
1 TTTTTTATTTTCTTCA
16138377 TTTTTTATTTT
1 TTTTTTATTTT
16138388 GGGTTGTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTTTATTTTCTTCA
Found at i:16138930 original size:126 final size:129
Alignment explanation
Indices: 16138677--16139283 Score: 948
Period size: 126 Copynumber: 4.8 Consensus size: 129
16138667 CCCCGTCTAA
16138677 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCT-CGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATC---T
*
16138741 ATCTTCGATCTGCTCTCCGCCGCTAC-GAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCG-C
63 ATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
16138804 -C
128 GC
*
16138805 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC-ATC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATC
16138869 TTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
66 TTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16138933 TACAGAGACGCCAAATC---TATCTTCGATCTGCTCT-CGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATC---T
*
16138994 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATC---TA--TTCGATCTGCTCTCCGCC
63 ATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
16139054 GC
128 GC
* *
16139056 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCTGCTACAGAGATGCCAAATC-ATC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATC
16139120 TTCGATCTGCTC-TCG-CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
66 TTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16139182 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATC---T
16139247 ATCTTCGATCTGCTCTT---CGCTACAGAGACGCCAAATC
63 ATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATC
16139284 ATCTTGGATT
Statistics
Matches: 448, Mismatches: 9, Indels: 43
0.90 0.02 0.09
Matches are distributed among these distances:
121 20 0.04
122 2 0.00
123 52 0.12
124 24 0.05
125 44 0.10
126 132 0.29
127 22 0.05
128 94 0.21
129 42 0.09
130 15 0.03
131 1 0.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (129 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATC
TTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:16138931 original size:44 final size:44
Alignment explanation
Indices: 16138677--16139283 Score: 978
Period size: 44 Copynumber: 14.4 Consensus size: 44
16138667 CCCCGTCTAA
16138677 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCT-CGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16138720 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16138764 TAC-GAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCG-C-C
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16138805 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
16138849 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTTCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16138889 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16138933 TACAGAGACGCCAAATC---TATCTTCGATCTGCTCT-CGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16138973 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16139017 TACAGAGACGCCAAATC---TA--TTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
16139056 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
16139100 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCT-CG-CGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16139138 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16139182 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
16139226 TACAGAGACGCCAAATCTATTATCTTCGATCTGCTCT---TCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16139267 TACAGAGACGCCAAATC
1 TACAGAGACGCCAAATC
16139284 ATCTTGGATT
Statistics
Matches: 531, Mismatches: 10, Indels: 48
0.90 0.02 0.08
Matches are distributed among these distances:
38 18 0.03
39 39 0.07
40 77 0.15
41 43 0.08
42 55 0.10
43 93 0.18
44 206 0.39
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:16138935 original size:84 final size:84
Alignment explanation
Indices: 16138677--16139297 Score: 949
Period size: 84 Copynumber: 7.4 Consensus size: 84
16138667 CCCCGTCTAA
16138677 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTC-TCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATC----ATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTT
16138741 ATCTTCGATCTGCTCTCCGCCGC
62 ATCTTCGATCTGCTCTCCGCCGC
*
16138764 TAC-GAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCG-C-CTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATC----ATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTT
16138826 ATCTTCGATCTGCTCTCCGCCGC
62 ATCTTCGATCTGCTCTCCGCCGC
*
16138849 TACAGAGATGCCAAATCATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATCT
1 TACAGAGACGCCAAATCATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATCT
16138914 TCGATCTGCTCTCCGCCGC
66 TCGATCTGCTCTCCGCCGC
16138933 TACAGAGACGCCAAATCTATCTTCGATCTGCTC-TCGCCGCTACAGAGACGCCAAATCTGTTATC
1 TACAGAGACGCCAAATC-ATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATC
16138997 TTCGATCTGCTCTCCGCCGC
65 TTCGATCTGCTCTCCGCCGC
* *
16139017 TACAGAGACGCCAAATC-TATTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCT
1 TACAGAGACGCCAAATCATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATCT
*
16139081 TCGATCTGCTCTCCGCTGC
66 TCGATCTGCTCTCCGCCGC
*
16139100 TACAGAGATGCCAAATCATCTTCGATCTGCTC-TCG-CGCTACAGAGACGCCAAATCTGTTATCT
1 TACAGAGACGCCAAATCATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATCT
16139163 TCGATCTGCTCTCCGCCGC
66 TCGATCTGCTCTCCGCCGC
* *
16139182 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATT
1 TACAGAGACGCCAAATC----ATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTT
*
16139247 ATCTTCGATCTGCTCT---TCGC
62 ATCTTCGATCTGCTCTCCGCCGC
* *
16139267 TACAGAGACGCCAAATCATCTTGGATTTGCT
1 TACAGAGACGCCAAATCATCTTCGATCTGCT
16139298 TCAACGTAAA
Statistics
Matches: 504, Mismatches: 17, Indels: 32
0.91 0.03 0.06
Matches are distributed among these distances:
81 12 0.02
82 93 0.18
83 68 0.13
84 142 0.28
85 83 0.16
86 60 0.12
87 7 0.01
88 39 0.08
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.28
Consensus pattern (84 bp):
TACAGAGACGCCAAATCATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATCT
TCGATCTGCTCTCCGCCGC
Found at i:16139606 original size:61 final size:64
Alignment explanation
Indices: 16139488--16139610 Score: 191
Period size: 61 Copynumber: 2.0 Consensus size: 64
16139478 TCATGTATCC
16139488 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
16139552 ATGCTTTATGTCAAATAATTAGGATG-T-T-A-TGAAATGAATCAAATGTTCCTAACTAAATG
1 ATGC-TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATG
16139611 AATGGTTATG
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
61 29 0.52
62 1 0.02
63 1 0.02
64 5 0.09
65 20 0.36
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:16150306 original size:19 final size:19
Alignment explanation
Indices: 16150282--16150319 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
16150272 TTGAGATTGC
*
16150282 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
16150301 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
16150320 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:16158110 original size:15 final size:17
Alignment explanation
Indices: 16158076--16158118 Score: 63
Period size: 15 Copynumber: 2.6 Consensus size: 17
16158066 GAGGTTAGGT
*
16158076 TTTTTTCTTTTTCTTCA
1 TTTTTTATTTTTCTTCA
16158093 TTTTTTATTTTT-TT-A
1 TTTTTTATTTTTCTTCA
16158108 TTTTTTATTTT
1 TTTTTTATTTT
16158119 GGGTTGTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 12 0.48
16 2 0.08
17 11 0.44
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTTATTTTTCTTCA
Found at i:16158500 original size:84 final size:84
Alignment explanation
Indices: 16158402--16159008 Score: 902
Period size: 84 Copynumber: 7.2 Consensus size: 84
16158392 CCCCGTCTAA
16158402 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCGCCGCTACAGAGACGCCAAATCTGTTAT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCGCCGCTACAGAGACGCCAAATCTGTTAT
16158467 CTTCGATCTGCTCCGCCGC
66 CTTCGATCTGCTCCGCCGC
16158486 TACAGAGACGCCAAATCT-TTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTG--CTCCGCCGCTACAGAGACGCCAAATCTGTT
16158550 ATCTTCGATCTGCTCTCCGCCGC
64 ATCTTCGATCTG--CTCCGCCGC
16158573 TACAGAGACGCCAAATC----ATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTC--CGCCGCTACAGAGACGCCAAATCTGTT
16158634 ATCTTCGATCTGCTCTCCGCCGC
64 ATCTTCGATCTG--CTCCGCCGC
*
16158657 TACAGAG--GCCAAATC----ATATTCGATCTGCTCTCGCCGCTACAGAGACGCCAAATCTGTTA
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTC-CGCCGCTACAGAGACGCCAAATCTGTTA
*
16158716 TCTTCGATCTGCT-CTCCGC
65 TCTTCGATCTGCTCCGCCGC
16158735 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTG--CTCCGCCGCTACAGAGACGCCAAATCTGTT
16158800 ATCTTCGATCTGCTCTC-CGCGC
64 ATCTTCGATCTGCTC-CGC-CGC
*
16158822 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCGCCGCTACAGAGACGCCAAATCTGTTA
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTC-CGCCGCTACAGAGACGCCAAATCTGTTA
*
16158887 TCTTCGATCTGCT-CTCCGC
65 TCTTCGATCTGCTCCGCCGC
*
16158906 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTG--CTCCGCCGCTACAGAGACGCCAAATCTGTT
*
16158971 ATCTTCGATCTGCTCTC-TCGC
64 ATCTTCGATCTGCTC-CGCCGC
16158992 TACAGAGACGCCAAATC
1 TACAGAGACGCCAAATC
16159009 ATCTTGGATT
Statistics
Matches: 493, Mismatches: 7, Indels: 44
0.91 0.01 0.08
Matches are distributed among these distances:
78 12 0.02
79 2 0.00
80 8 0.02
81 40 0.08
82 25 0.05
83 14 0.03
84 134 0.27
85 127 0.26
86 68 0.14
87 63 0.13
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (84 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCGCCGCTACAGAGACGCCAAATCTGTTAT
CTTCGATCTGCTCCGCCGC
Found at i:16158567 original size:44 final size:44
Alignment explanation
Indices: 16158402--16159008 Score: 987
Period size: 44 Copynumber: 14.4 Consensus size: 44
16158392 CCCCGTCTAA
16158402 TACAGAGACGCCAAATCTGTTATCTTCGATCTG--CTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16158444 TACAGAGACGCCAAATCTGTTATCTTCGATCTG--CTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16158486 TACAGAGACGCCAAATCT-TTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16158529 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
16158573 TACAGAGACGCCAAATC----ATCTTCGATCTGCTCTTCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16158613 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
16158657 TACAGAG--GCCAAATC----ATATTCGATCTGCTCT-CGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16158694 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCT---CCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16158735 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16158779 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCG-CGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
16158822 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCT-CGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16158865 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCT---CCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16158906 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
16158950 TACAGAGACGCCAAATCTATTATCTTCGATCTGCTCT-C-TCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
16158992 TACAGAGACGCCAAATC
1 TACAGAGACGCCAAATC
16159009 ATCTTGGATT
Statistics
Matches: 537, Mismatches: 8, Indels: 40
0.92 0.01 0.07
Matches are distributed among these distances:
37 13 0.02
38 15 0.03
39 8 0.01
40 39 0.07
41 96 0.18
42 90 0.17
43 121 0.23
44 155 0.29
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:16158908 original size:171 final size:171
Alignment explanation
Indices: 16158402--16159008 Score: 1012
Period size: 171 Copynumber: 3.6 Consensus size: 171
16158392 CCCCGTCTAA
16158402 TACAGAGACGCCAAATCTGTTATCTTCGATCTG--CTCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
16158465 ATCTTCGATCTG--CTCCGCCGCTACAGAGACGCCAAATCTTTATCTTCGATCTGCTCTCCGCCG
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTTTATCTTCGATCTGCTCT-CGCCG
16158528 CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
130 CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCT---CCGC
*
16158573 TACAGAGACGCCAAATC----ATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
*
16158634 ATCTTCGATCTGCTCTCCGCCGCTACAGAG--GCCAAATC---ATATTCGATCTGCTCTCGCCGC
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTTTATCTTCGATCTGCTCTCGCCGC
16158694 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGC
131 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGC
16158735 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
*
16158800 ATCTTCGATCTGCTCTCCG-CGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCGCCG
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCT-TTATCTTCGATCTGCTCTCGCCG
16158864 CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGC
130 CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGC
*
16158906 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
*
16158971 ATCTTCGATCTGCTCT-C-TCGCTACAGAGACGCCAAATC
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATC
16159009 ATCTTGGATT
Statistics
Matches: 415, Mismatches: 6, Indels: 31
0.92 0.01 0.07
Matches are distributed among these distances:
162 21 0.05
165 53 0.13
166 77 0.19
167 20 0.05
169 49 0.12
170 20 0.05
171 175 0.42
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (171 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTTTATCTTCGATCTGCTCTCGCCGC
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGC
Found at i:16159332 original size:61 final size:64
Alignment explanation
Indices: 16159214--16159336 Score: 191
Period size: 61 Copynumber: 2.0 Consensus size: 64
16159204 TCATGTATCC
16159214 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
16159278 ATGCTTTATGTCAAATAATTAGGATG-T-T-A-TGAAATGAATCAAATGTTCCTAACTAAATG
1 ATGC-TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATG
16159337 AATGGTTATG
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
61 29 0.52
62 1 0.02
63 1 0.02
64 5 0.09
65 20 0.36
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:16171191 original size:19 final size:19
Alignment explanation
Indices: 16171167--16171204 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
16171157 GAAATGAATA
*
16171167 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
16171186 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
16171205 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:16175079 original size:25 final size:26
Alignment explanation
Indices: 16174985--16175093 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
16174975 CATGATATTC
16174985 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
16175011 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
16175037 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
16175063 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
16175088 TTATCA
1 TTATCA
16175094 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 23 0.28
26 58 0.72
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:16175495 original size:15 final size:17
Alignment explanation
Indices: 16175461--16175503 Score: 63
Period size: 15 Copynumber: 2.6 Consensus size: 17
16175451 GGTTAGGTTT
*
16175461 TTTTTTCTTTTTCTTCA
1 TTTTTTATTTTTCTTCA
16175478 TTTTTTATTTTT-TT-A
1 TTTTTTATTTTTCTTCA
16175493 TTTTTTATTTT
1 TTTTTTATTTT
16175504 GGGTTGTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 12 0.48
16 2 0.08
17 11 0.44
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTTATTTTTCTTCA
Found at i:16185539 original size:33 final size:33
Alignment explanation
Indices: 16185497--16185564 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
16185487 TAAAACTGTT
16185497 AACTTCTTGCTTGTTGTCAAAAAGACAAAGTTC
1 AACTTCTTGCTTGTTGTCAAAAAGACAAAGTTC
16185530 AACTTCTTGCTTGTTGTCAAAAAGACAAAGTTC
1 AACTTCTTGCTTGTTGTCAAAAAGACAAAGTTC
16185563 AA
1 AA
16185565 ATAGCATATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (33 bp):
AACTTCTTGCTTGTTGTCAAAAAGACAAAGTTC
Found at i:16193023 original size:11 final size:11
Alignment explanation
Indices: 16193000--16193038 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
16192990 CTCTAAATAA
*
16193000 AAACAAAAT-G
1 AAACAAATTGG
16193010 AAACAAATTGG
1 AAACAAATTGG
*
16193021 AAACAAATTGT
1 AAACAAATTGG
16193032 AAACAAA
1 AAACAAA
16193039 ATAAAAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.64, C:0.10, G:0.10, T:0.15
Consensus pattern (11 bp):
AAACAAATTGG
Found at i:16193046 original size:22 final size:21
Alignment explanation
Indices: 16192994--16193052 Score: 73
Period size: 22 Copynumber: 2.8 Consensus size: 21
16192984 TTATCTCTCT
16192994 AAATAAAAACAAAATGAAACA
1 AAATAAAAACAAAATGAAACA
* ** *
16193015 AATTGGAAACAAATTGTAAACA
1 AAATAAAAACAAAATG-AAACA
16193037 AAATAAAAACAAAATG
1 AAATAAAAACAAAATG
16193053 TGTTTTGTTC
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 12 0.41
22 17 0.59
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.15
Consensus pattern (21 bp):
AAATAAAAACAAAATGAAACA
Found at i:16202715 original size:3 final size:3
Alignment explanation
Indices: 16202709--16203109 Score: 148
Period size: 3 Copynumber: 133.0 Consensus size: 3
16202699 AAAAGAAAGT
16202709 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GA-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * * * * * *
16202757 ATA ATA ATA AGA ATA ATG ATG ATC ATA AGA GAAA AT- ATA ATT ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* * * *
16202802 GT- ATA A-A AGTA A-A AGTA AAA ATA ATA ATA GTA ATA ATA ATA TTA
1 ATA ATA ATA A-TA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
16202846 ATA AAA AGA ATA ATA AAA ATAA ATA AAA ATA ATA ATGA AT- GTG ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA AT-A ATA ATA ATA
* * * * *
16202892 GTA A-C ATA A-A ATA ATA ATG A-A ATA ACA CTA ATA ATA GA-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * * * * *
16202934 GATA A-G ATAA ATAA ATA ACA ATA ATA ATA ATG AT- ATG TTA ACA ATA
1 -ATA ATA AT-A AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
16202980 ATA ATA ATA ATA A-A GAAA ATA ATA ACA TTTGA ATA ATA ATA GGCTA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA -AT-A ATA ATA ATA --ATA
** ** * * * *
16203026 ATA ATA ACG ATA GCA AAA ATTGA A-A ATA GTA ATA ATG A-A ATA AAA
1 ATA ATA ATA ATA ATA ATA A-T-A ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
16203071 ATA ATA TTA AAA ATA ATA CTA ATA ATA ACA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
16203110 TTAAAATTAA
Statistics
Matches: 289, Mismatches: 78, Indels: 62
0.67 0.18 0.14
Matches are distributed among these distances:
2 21 0.07
3 238 0.82
4 25 0.09
5 5 0.02
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:16207183 original size:115 final size:115
Alignment explanation
Indices: 16206981--16207215 Score: 434
Period size: 115 Copynumber: 2.0 Consensus size: 115
16206971 ATTATATTCA
*
16206981 CGTCATGTAATTTACTTTATTTATGTTATTTTACTCATGTCATTATAACCATGTTATTAATTGTG
1 CGTCATGTAATTTACTTTATTTATGTTATTTTACTCATGTCACTATAACCATGTTATTAATTGTG
* *
16207046 CAGTTCGTGTGAATGTCATATACTGCGTTGAACGTTACGGGTGTATTCCC
66 CAGTTCGTGTGAATGGCATATACTGCGTCGAACGTTACGGGTGTATTCCC
16207096 CGTCATGTAATTTACTTTATTTATGTTATTTTACTCATGTCACTATAACCATGTTATTAATTGTG
1 CGTCATGTAATTTACTTTATTTATGTTATTTTACTCATGTCACTATAACCATGTTATTAATTGTG
*
16207161 TAGTTCGTGTGAATGGCATATACTGCGTCGAACGTTACGGGTGTATTCCC
66 CAGTTCGTGTGAATGGCATATACTGCGTCGAACGTTACGGGTGTATTCCC
16207211 CGTCA
1 CGTCA
16207216 ACTTACAACC
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
115 116 1.00
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (115 bp):
CGTCATGTAATTTACTTTATTTATGTTATTTTACTCATGTCACTATAACCATGTTATTAATTGTG
CAGTTCGTGTGAATGGCATATACTGCGTCGAACGTTACGGGTGTATTCCC
Found at i:16208514 original size:21 final size:21
Alignment explanation
Indices: 16208490--16208551 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
16208480 AGTCGGGTAC
*
16208490 CTCAGTCACACGAGCGTGTCT
1 CTCAATCACACGAGCGTGTCT
* * *
16208511 CTCAATCACATG-GCTATGTAT
1 CTCAATCACACGAGC-GTGTCT
*
16208532 CTCAATCACACAAGCGTGTC
1 CTCAATCACACGAGCGTGTC
16208552 CCCCAGCCAC
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
20 2 0.06
21 27 0.87
22 2 0.06
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (21 bp):
CTCAATCACACGAGCGTGTCT
Found at i:16213311 original size:16 final size:17
Alignment explanation
Indices: 16213283--16213319 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
16213273 TATTTAATGT
16213283 ATAA-ATTTATTTATTA
1 ATAATATTTATTTATTA
16213299 ATAATATTT-TTTATTA
1 ATAATATTTATTTATTA
*
16213315 TTAAT
1 ATAAT
16213320 GTAATAGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATAATATTTATTTATTA
Found at i:16213333 original size:21 final size:19
Alignment explanation
Indices: 16213293--16213335 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
16213283 ATAAATTTAT
* *
16213293 TTATTAATAATATTTTTTA
1 TTATTAATAATAGTTATTA
16213312 TTATTAATGTAATAGTTATTA
1 TTATTAA--TAATAGTTATTA
16213333 TTA
1 TTA
16213336 CTTATTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
21 13 0.65
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
TTATTAATAATAGTTATTA
Found at i:16213871 original size:14 final size:13
Alignment explanation
Indices: 16213832--16213878 Score: 64
Period size: 14 Copynumber: 3.8 Consensus size: 13
16213822 GTATCTCATT
16213832 AAAA-AAATT-TA
1 AAAATAAATTATA
16213843 AAAAT-AATTATA
1 AAAATAAATTATA
16213855 AAAATAAATTCATA
1 AAAATAAATT-ATA
16213869 AAAATAAATT
1 AAAATAAATT
16213879 TAGATAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.25
12 7 0.22
13 4 0.12
14 13 0.41
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATAAATTATA
Found at i:16215263 original size:144 final size:144
Alignment explanation
Indices: 16215086--16215387 Score: 516
Period size: 144 Copynumber: 2.1 Consensus size: 144
16215076 TAATAATCTC
* * * *
16215086 TCTGGTTCTATCCCCAGTGAGATAGGGATGCTCAAATCTCTTTTCGACTTGCAGTTGTCGGACAA
1 TCTGGTTCTATCCCCACTGAGATAGGAATGCTCAAATCTCTTTTCGACTTGCAGTTATCGAACAA
*
16215151 TAATCTCACTGGTGTCATCCCTGATTCCATAGGAAACTTGACCAACTTG-GACAATCTTGTGCTT
66 TAATCTCACTGGTGCCATCCCTGATTCCATAGGAAACTTGACCAACTTGAG-CAATCTTGTGCTT
16215215 AATTTTAATGGGCTT
130 AATTTTAATGGGCTT
16215230 TCTGGTTCTATCCCCACTGAGATAGGAATGCTCAAATCTCTTTTCGACTTGCAGTTATCGAACAA
1 TCTGGTTCTATCCCCACTGAGATAGGAATGCTCAAATCTCTTTTCGACTTGCAGTTATCGAACAA
* *
16215295 TAATCTCACTGGTGCCATCCCTGATTCCATAGGAAACTTGACTAACTTGAGCAATCTTGTGCTTC
66 TAATCTCACTGGTGCCATCCCTGATTCCATAGGAAACTTGACCAACTTGAGCAATCTTGTGCTTA
16215360 ATTTTAATGGGCTT
131 ATTTTAATGGGCTT
*
16215374 TCTGGTTCAATCCC
1 TCTGGTTCTATCCC
16215388 AACTTCCATG
Statistics
Matches: 149, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
144 148 0.99
145 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34
Consensus pattern (144 bp):
TCTGGTTCTATCCCCACTGAGATAGGAATGCTCAAATCTCTTTTCGACTTGCAGTTATCGAACAA
TAATCTCACTGGTGCCATCCCTGATTCCATAGGAAACTTGACCAACTTGAGCAATCTTGTGCTTA
ATTTTAATGGGCTT
Found at i:16217555 original size:5 final size:5
Alignment explanation
Indices: 16217542--16217583 Score: 59
Period size: 5 Copynumber: 8.6 Consensus size: 5
16217532 CTTGGTGTGA
* *
16217542 AAAAA AAAAT AAAAT AAAAT AGAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
16217584 GAACACACAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
4 4 0.12
5 29 0.88
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:16223365 original size:7 final size:8
Alignment explanation
Indices: 16223339--16223364 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
16223329 CAACTTCATT
16223339 AAATAAAA
1 AAATAAAA
16223347 AAATAAAA
1 AAATAAAA
16223355 AAATAAAA
1 AAATAAAA
16223363 AA
1 AA
16223365 TTAAGTCCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAATAAAA
Found at i:16229683 original size:30 final size:30
Alignment explanation
Indices: 16229649--16229713 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
16229639 CAACTTAACA
*
16229649 AACAAATTCCTCTAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
*
16229679 AACAAATGCCTTTAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
16229709 AACAA
1 AACAA
16229714 TAAAATAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.25
Consensus pattern (30 bp):
AACAAATGCCTCTAAAATAATAACAAAATT
Found at i:16229768 original size:22 final size:21
Alignment explanation
Indices: 16229743--16229784 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
16229733 TATCCAAACA
16229743 ATAACAATAAAATAGTAGCAAT
1 ATAACAATAAAAT-GTAGCAAT
* *
16229765 ATAATAGTAAAATGTAGCAA
1 ATAACAATAAAATGTAGCAA
16229785 AATAGAGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.57, C:0.07, G:0.12, T:0.24
Consensus pattern (21 bp):
ATAACAATAAAATGTAGCAAT
Found at i:16229797 original size:21 final size:22
Alignment explanation
Indices: 16229750--16229797 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
16229740 ACAATAACAA
* *
16229750 TAAAATAGTAGCAATATAATAG
1 TAAAATAGTAGCAAAATAAGAG
16229772 TAAAAT-GTAGCAAAATAGAGAG
1 TAAAATAGTAGCAAAATA-AGAG
16229794 -AAAA
1 TAAAA
16229798 CAACAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.58, C:0.04, G:0.17, T:0.21
Consensus pattern (22 bp):
TAAAATAGTAGCAAAATAAGAG
Found at i:16236159 original size:11 final size:11
Alignment explanation
Indices: 16236145--16236189 Score: 63
Period size: 11 Copynumber: 4.1 Consensus size: 11
16236135 TTTTATGTTT
16236145 ATAATATAATA
1 ATAATATAATA
*
16236156 ATAATACAATA
1 ATAATATAATA
*
16236167 ATAATTTAATA
1 ATAATATAATA
*
16236178 ATATTATAATA
1 ATAATATAATA
16236189 A
1 A
16236190 CATAATATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (11 bp):
ATAATATAATA
Found at i:16244231 original size:12 final size:12
Alignment explanation
Indices: 16244211--16244252 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
16244201 AGTATTCCAA
16244211 TTTTT-TTATTT
1 TTTTTATTATTT
16244222 TTTTTATTATTT
1 TTTTTATTATTT
*
16244234 ATTTTATT-TTAT
1 TTTTTATTATT-T
16244246 TTTTTAT
1 TTTTTAT
16244253 AAATTTCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
11 7 0.26
12 20 0.74
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTATTATTT
Found at i:16244238 original size:21 final size:20
Alignment explanation
Indices: 16244210--16244252 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
16244200 AAGTATTCCA
16244210 ATTTTTTTATTTT-TTTTATT
1 ATTTTTTTATTTTATTTT-TT
16244230 ATTTATTTTATTTTATTTTTT
1 ATTT-TTTTATTTTATTTTTT
16244251 AT
1 AT
16244253 AAATTTCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 4 0.19
21 13 0.62
22 4 0.19
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (20 bp):
ATTTTTTTATTTTATTTTTT
Found at i:16244245 original size:17 final size:16
Alignment explanation
Indices: 16244215--16244252 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
16244205 TTCCAATTTT
16244215 TTTATTTTTTTTATTA
1 TTTATTTTTTTTATTA
*
16244231 TTTATTTTATTTTATTT
1 TTTATTTT-TTTTATTA
16244248 TTTAT
1 TTTAT
16244253 AAATTTCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTATTTTTTTTATTA
Found at i:16244258 original size:21 final size:21
Alignment explanation
Indices: 16244214--16244258 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
16244204 ATTCCAATTT
**
16244214 TTTTATTTTTTTTATTATTTA
1 TTTTATTTTTTTTATTATAAA
16244235 TTTTATTTTATTTT-TTATAAA
1 TTTTATTTT-TTTTATTATAAA
16244256 TTT
1 TTT
16244259 CAACAGCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTATTTTTTTTATTATAAA
Found at i:16245002 original size:46 final size:45
Alignment explanation
Indices: 16244935--16245030 Score: 122
Period size: 47 Copynumber: 2.1 Consensus size: 45
16244925 ACCAACACAC
* * * *
16244935 CAGTACGACACATAGTGCCTCATCGG-CCGAAGCCGAAACAGTAA
1 CAGTACGACACAGAGTACCTCATCGGAACAAAGCCGAAACAGTAA
*
16244979 CAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGAAACAGTAA
1 CAGTAC-G-ACACAGAGTACCTCATCGGAACAAAGCCGAAACAGTAA
16245026 CAGTA
1 CAGTA
16245031 ACAGTAATGG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
44 6 0.14
45 1 0.02
46 17 0.39
47 20 0.45
ACGTcount: A:0.38, C:0.27, G:0.21, T:0.15
Consensus pattern (45 bp):
CAGTACGACACAGAGTACCTCATCGGAACAAAGCCGAAACAGTAA
Found at i:16245088 original size:12 final size:12
Alignment explanation
Indices: 16245071--16245095 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16245061 AGTGTCGAAT
16245071 CGGTAACAGTAA
1 CGGTAACAGTAA
16245083 CGGTAACAGTAA
1 CGGTAACAGTAA
16245095 C
1 C
16245096 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:16246187 original size:10 final size:11
Alignment explanation
Indices: 16246165--16246193 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
16246155 GTTTCTTTAT
16246165 ATATAATAATA
1 ATATAATAATA
16246176 ATATAA-AATA
1 ATATAATAATA
16246186 ATATAATA
1 ATATAATA
16246194 TACTTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
ATATAATAATA
Found at i:16256513 original size:40 final size:39
Alignment explanation
Indices: 16256488--16256639 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
16256478 TATGGTGACC
* * *
16256488 CGCACAAATGCCTTCGGGACTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
16256528 CGCACAGTTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
16256567 CTCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
16256606 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
16256640 CAATTCGCAC
Statistics
Matches: 105, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.85
40 16 0.15
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:16260711 original size:28 final size:28
Alignment explanation
Indices: 16260679--16260743 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
16260669 ATTTACTAGA
*
16260679 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
16260707 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
16260735 ATACCCCTA
1 ATACCCCTA
16260744 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:16260890 original size:28 final size:27
Alignment explanation
Indices: 16260849--16260937 Score: 108
Period size: 27 Copynumber: 3.2 Consensus size: 27
16260839 AGGAAGCGTC
16260849 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
16260877 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
16260904 CTGGTGGCACTGCCAAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATATCTGT-T
16260932 CTGGTG
1 CTGGTG
16260938 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 30 0.58
28 22 0.42
ACGTcount: A:0.19, C:0.24, G:0.25, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:16260962 original size:55 final size:55
Alignment explanation
Indices: 16260849--16260962 Score: 126
Period size: 55 Copynumber: 2.1 Consensus size: 55
16260839 AGGAAGCGTC
* * *
16260849 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTT
* * *
16260904 CTGGTGGC-ACTGCCA-AAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGT-T
16260959 CTGG
1 CTGG
16260963 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
54 17 0.34
55 33 0.66
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTT
Found at i:16261423 original size:19 final size:19
Alignment explanation
Indices: 16261399--16261437 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
16261389 TTTTAATTAT
* *
16261399 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
16261418 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
16261437 T
1 T
16261438 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:16262047 original size:11 final size:10
Alignment explanation
Indices: 16262019--16262052 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
16262009 AGCCTGTAAG
16262019 TATTCTGAAT
1 TATTCTGAAT
*
16262029 TTTTCTGAAT
1 TATTCTGAAT
16262039 ATATTCTGAAT
1 -TATTCTGAAT
16262050 TAT
1 TAT
16262053 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:16268525 original size:28 final size:28
Alignment explanation
Indices: 16268493--16268554 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
16268483 ATTTACTAGA
* *
16268493 ATACCCCTATGTGTGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
16268521 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
16268549 ATACCC
1 ATACCC
16268555 GTAGGGTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:16268721 original size:27 final size:28
Alignment explanation
Indices: 16268663--16268752 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
16268653 AGGAAGCGTC
*
16268663 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
16268691 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
16268718 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
16268747 CTGGTG
1 CTGGTG
16268753 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:16268763 original size:29 final size:28
Alignment explanation
Indices: 16268673--16268763 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
16268663 CTGGTGGCTA
* * *
16268673 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
16268701 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
16268728 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
16268757 TGTCACA
1 TGCCACA
16268764 TTTCCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:16269240 original size:19 final size:19
Alignment explanation
Indices: 16269216--16269254 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
16269206 TTTTAATTAT
* *
16269216 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
16269235 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
16269254 T
1 T
16269255 GTGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:16275443 original size:28 final size:27
Alignment explanation
Indices: 16275403--16275559 Score: 104
Period size: 28 Copynumber: 5.6 Consensus size: 27
16275393 ATACAATGTC
*
16275403 TCGCACACTAAGTGCCATTCCTGATGCT
1 TCGCACACTAAGTGCCA-TCCTGATGAT
* *
16275431 TCGCACACTAAGTGCCATCTTTGA-GTTT
1 TCGCACACTAAGTGCCATC-CTGATG-AT
* ** * *
16275459 TAGCATGCTAAGTGCCATCTTTAAT-AT
1 TCGCACACTAAGTGCCATC-CTGATGAT
* * *
16275486 ATCGCACATTAAGTGCCATTTCTGGATGTT
1 -TCGCACACTAAGTGCCA-TCCT-GATGAT
16275516 TCGCACACTAAGTGCCATCCTCGAT-AT
1 TCGCACACTAAGTGCCATCCT-GATGAT
*
16275543 ATCGTACACTAAGTGCC
1 -TCGCACACTAAGTGCC
16275560 GTTTATAAGG
Statistics
Matches: 101, Mismatches: 20, Indels: 16
0.74 0.15 0.12
Matches are distributed among these distances:
27 5 0.05
28 76 0.75
29 19 0.19
30 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (27 bp):
TCGCACACTAAGTGCCATCCTGATGAT
Found at i:16275555 original size:85 final size:84
Alignment explanation
Indices: 16275403--16275559 Score: 199
Period size: 85 Copynumber: 1.9 Consensus size: 84
16275393 ATACAATGTC
* * * **
16275403 TCGCACACTAAGTGCCATTCCTGATGCTTCGCACACTAAGTGCCATCTTTGAGTTTTAGCATGCT
1 TCGCACACTAAGTGCCATTCCTGATGCTTCGCACACTAAGTGCCATCCTCGAGTTATAGCACACT
16275468 AAGTGCCATCTTTAATATA
66 AAGTGCCATCTTTAATATA
* * * * *
16275487 TCGCACATTAAGTGCCATTTCTGGATGTTTCGCACACTAAGTGCCATCCTCGA-TATATCGTACA
1 TCGCACACTAAGTGCCATTCCT-GATGCTTCGCACACTAAGTGCCATCCTCGAGT-TATAGCACA
16275551 CTAAGTGCC
64 CTAAGTGCC
16275560 GTTTATAAGG
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
84 21 0.34
85 40 0.66
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (84 bp):
TCGCACACTAAGTGCCATTCCTGATGCTTCGCACACTAAGTGCCATCCTCGAGTTATAGCACACT
AAGTGCCATCTTTAATATA
Found at i:16282106 original size:19 final size:19
Alignment explanation
Indices: 16282082--16282121 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
16282072 TGGGCCTCGA
16282082 TGGGCCAAAATGGGC-CGTG
1 TGGGCC-AAATGGGCTCGTG
*
16282101 TGGGCCTAATGGGCTCGTG
1 TGGGCCAAATGGGCTCGTG
16282120 TG
1 TG
16282122 CCCACAAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.15, C:0.20, G:0.42, T:0.23
Consensus pattern (19 bp):
TGGGCCAAATGGGCTCGTG
Found at i:16282387 original size:27 final size:27
Alignment explanation
Indices: 16282307--16282420 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 27
16282297 GGTCGTTAAG
* * *
16282307 ACCCCTGACTTGTGAAATTATCGAAAT
1 ACCCTTGATTTGTGAAATTACCGAAAT
* * *
16282334 ACCCTTAATTTGTAAAATTACCAAAAT
1 ACCCTTGATTTGTGAAATTACCGAAAT
* *
16282361 ACCCTTGATTTGTGAAACTACTGAAAT
1 ACCCTTGATTTGTGAAATTACCGAAAT
* * * *
16282388 AGCCTCGATTTTTGAAAATACCGAAAT
1 ACCCTTGATTTGTGAAATTACCGAAAT
16282415 AACCCT
1 -ACCCT
16282421 GTAGGGTAGG
Statistics
Matches: 69, Mismatches: 17, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
27 65 0.94
28 4 0.06
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (27 bp):
ACCCTTGATTTGTGAAATTACCGAAAT
Found at i:16282464 original size:27 final size:26
Alignment explanation
Indices: 16282402--16282460 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
16282392 TCGATTTTTG
*
16282402 AAAATACCGAAATAACCCTGTAGGGT
1 AAAATACCAAAATAACCCTGTAGGGT
* *
16282428 AGGATTACCAAAAT-ACCCTTGTAGGGT
1 A-AAATACCAAAATAACCC-TGTAGGGT
16282455 AAAATA
1 AAAATA
16282461 ACCATTTTGC
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (26 bp):
AAAATACCAAAATAACCCTGTAGGGT
Found at i:16282508 original size:26 final size:26
Alignment explanation
Indices: 16282450--16282514 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
16282440 ATACCCTTGT
* *
16282450 AGGGTAAAATAACCATTTTGCCTTAA
1 AGGGTAAAATGACTATTTTGCCTTAA
*
16282476 AGAGTAAAATGACTATTTTGCCCTT-A
1 AGGGTAAAATGACTATTTTG-CCTTAA
*
16282502 TGGGT-AAATGACT
1 AGGGTAAAATGACT
16282515 GACTTGGTCT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
25 8 0.24
26 21 0.64
27 4 0.12
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (26 bp):
AGGGTAAAATGACTATTTTGCCTTAA
Found at i:16288260 original size:15 final size:16
Alignment explanation
Indices: 16288222--16288261 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
16288212 TGACTATGAA
16288222 ATGTTAA-TGACATTG
1 ATGTTAATTGACATTG
*
16288237 ATGTTAATTTACATT-
1 ATGTTAATTGACATTG
16288252 ATGTTAATTG
1 ATGTTAATTG
16288262 CATAACAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.47
Consensus pattern (16 bp):
ATGTTAATTGACATTG
Found at i:16290801 original size:24 final size:24
Alignment explanation
Indices: 16290767--16290814 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
16290757 TTATAGTGTA
* *
16290767 TGACTAGAAGAAACCCGTTGGGAC
1 TGACTACAAGAAACCCGTCGGGAC
*
16290791 TGACTACAAGAAACTCGTCGGGAC
1 TGACTACAAGAAACCCGTCGGGAC
16290815 CATTGCTGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.23, G:0.27, T:0.17
Consensus pattern (24 bp):
TGACTACAAGAAACCCGTCGGGAC
Found at i:16302628 original size:13 final size:12
Alignment explanation
Indices: 16302590--16302624 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
16302580 AAGATTCTAT
16302590 ATATCTGTTCTG
1 ATATCTGTTCTG
16302602 ATTATCTGATTCTG
1 A-TATCTG-TTCTG
16302616 ATATCTGTT
1 ATATCTGTT
16302625 TCTGTTAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 3 0.14
13 12 0.57
14 6 0.29
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.51
Consensus pattern (12 bp):
ATATCTGTTCTG
Found at i:16307569 original size:7 final size:7
Alignment explanation
Indices: 16307557--16307582 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
16307547 TATATTGCTA
16307557 TTTTTAT
1 TTTTTAT
16307564 TTTTTAT
1 TTTTTAT
16307571 TTTTTAT
1 TTTTTAT
16307578 TTTTT
1 TTTTT
16307583 TTGGTTGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:16308338 original size:60 final size:62
Alignment explanation
Indices: 16308094--16308360 Score: 284
Period size: 60 Copynumber: 4.5 Consensus size: 62
16308084 GTGTCCATTA
* * *
16308094 GACACACAGTC-GTGTGAGTGATTTGGGAAATTAGGGCTT-CCACACGGGCGTGTGATATGG
1 GACACACAGTCTGTGTGACTGATTTGGGAAATTAGGGCTTCCCACACGGGCGTGTGCTTTGG
* * * **
16308154 GACACACAG-CTGTGTAACTGATTTGGGAAATTAGGG-TTCCCACACGAGCGTGTACTTCCG
1 GACACACAGTCTGTGTGACTGATTTGGGAAATTAGGGCTTCCCACACGGGCGTGTGCTTTGG
* * * * *
16308214 GACACAC-GACTGTCTGACTGATTTGAGCAATTAGGGCTT-CCACACAGGCGTGTG-TTATGG
1 GACACACAGTCTGTGTGACTGATTTGGGAAATTAGGGCTTCCCACACGGGCGTGTGCTT-TGG
* * **
16308274 GACACAC-GTCTGTGTAACTGATTTGGGAAATTAGGG-TTCCCACATGGGCGTGTGCTTTAA
1 GACACACAGTCTGTGTGACTGATTTGGGAAATTAGGGCTTCCCACACGGGCGTGTGCTTTGG
* *
16308334 GACACACGGTC-GTGTGACTAATTTGGG
1 GACACACAGTCTGTGTGACTGATTTGGG
16308361 GCTTAGGGAT
Statistics
Matches: 171, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
59 8 0.05
60 156 0.91
61 7 0.04
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.27
Consensus pattern (62 bp):
GACACACAGTCTGTGTGACTGATTTGGGAAATTAGGGCTTCCCACACGGGCGTGTGCTTTGG
Found at i:16308352 original size:120 final size:118
Alignment explanation
Indices: 16308074--16308390 Score: 379
Period size: 120 Copynumber: 2.7 Consensus size: 118
16308064 TTGTCGGAAA
* * * * *
16308074 CCACATGGTCGTGTCCATTAGACACACAGTCGTGTGAGTGATTTGGGAAATTAGGGCTTCCACAC
1 CCACATGGGCGTGTACTTTAGACACAC-GTCGTGTGACTGATTTGGGCAATTAGGGCTTCCACAC
* *
16308139 GGGCGTGTGATATGGGACACACAGCTGTGTAACTGATTTGGGAAATTAGGGTTC
65 AGGCGTGTGTTATGGGACACACAGCTGTGTAACTGATTTGGGAAATTAGGGTTC
* * ** * * *
16308193 CCACACGAGCGTGTACTTCCGGACACACGACTGTCTGACTGATTTGAGCAATTAGGGCTTCCACA
1 CCACATGGGCGTGTACTT-TAGACACACGTC-GTGTGACTGATTTGGGCAATTAGGGCTTCCACA
16308258 CAGGCGTGTGTTATGGGACACAC-GTCTGTGTAACTGATTTGGGAAATTAGGGTTC
64 CAGGCGTGTGTTATGGGACACACAG-CTGTGTAACTGATTTGGGAAATTAGGGTTC
* * * *
16308313 CCACATGGGCGTGTGCTTTAAGACACACGGTCGTGTGACTAATTTGGGGC--TTAGGGATTCCAT
1 CCACATGGGCGTGTACTTT-AGACACAC-GTCGTGTGACTGATTT-GGGCAATTAGGGCTTCCAC
*
16308376 ACAGACGTGTGTTAT
63 ACAGGCGTGTGTTAT
16308391 AAGACACATA
Statistics
Matches: 166, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
119 41 0.25
120 120 0.72
121 5 0.03
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (118 bp):
CCACATGGGCGTGTACTTTAGACACACGTCGTGTGACTGATTTGGGCAATTAGGGCTTCCACACA
GGCGTGTGTTATGGGACACACAGCTGTGTAACTGATTTGGGAAATTAGGGTTC
Found at i:16308394 original size:59 final size:59
Alignment explanation
Indices: 16308114--16308398 Score: 215
Period size: 60 Copynumber: 4.8 Consensus size: 59
16308104 CGTGTGAGTG
* * ** *
16308114 ATTTGGGAAATTAGGGCTTCCACACGGGCGTGTGATATGGGACACACAG-CTGTGTAACTG
1 ATTTGGGAAATTAGGG-TTCCACACAGGCGTGTGTTATAAGACACAC-GTCTGTGTAACTA
* *** * * * *
16308174 ATTTGGGAAATTAGGGTTCC-CACACGAGCGTGTACTT-CCGGACACACGACTGTCTGACTG
1 ATTTGGGAAATTAGGGTTCCACACA-G-GCGTGT-GTTATAAGACACACGTCTGTGTAACTA
* * ** *
16308234 ATTTGAGCAATTAGGGCTTCCACACAGGCGTGTGTTATGGGACACACGTCTGTGTAACTG
1 ATTTGGGAAATTAGGG-TTCCACACAGGCGTGTGTTATAAGACACACGTCTGTGTAACTA
*
16308294 ATTTGGGAAATTAGGGTTCC-CACATGGGCGTGTGCTT-TAAGACACACGGTC-GTGTGACTA
1 ATTTGGGAAATTAGGGTTCCACACA--GGCGTGTG-TTATAAGACACAC-GTCTGTGTAACTA
** * *
16308354 ATTTGGG-GCTTAGGGATTCCATACAGACGTGTGTTATAAGACACA
1 ATTTGGGAAATTAGGG-TTCCACACAGGCGTGTGTTATAAGACACA
16308399 TAGCCGTGAC
Statistics
Matches: 186, Mismatches: 25, Indels: 29
0.77 0.10 0.12
Matches are distributed among these distances:
58 9 0.05
59 34 0.18
60 125 0.67
61 14 0.08
62 4 0.02
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (59 bp):
ATTTGGGAAATTAGGGTTCCACACAGGCGTGTGTTATAAGACACACGTCTGTGTAACTA
Found at i:16314470 original size:21 final size:20
Alignment explanation
Indices: 16314446--16314497 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 20
16314436 AAGTAATTTT
16314446 AATAAAAATAAAATAAAATAA
1 AATAAAAATAAAA-AAAATAA
*
16314467 AAT-AAAAT-AAAAACATAA
1 AATAAAAATAAAAAAAATAA
16314485 AATAATAAATAAA
1 AATAA-AAATAAA
16314498 TATTCTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 9 0.33
19 4 0.15
20 9 0.33
21 5 0.19
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (20 bp):
AATAAAAATAAAAAAAATAA
Found at i:16314489 original size:5 final size:5
Alignment explanation
Indices: 16314450--16314478 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
16314440 AATTTTAATA
16314450 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
16314479 ACATAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:16319602 original size:17 final size:18
Alignment explanation
Indices: 16319582--16319615 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16319572 TTAAAAAAGT
16319582 AAAAA-ATGAAAAAAAAC
1 AAAAATATGAAAAAAAAC
*
16319599 AAAAATTTGAAAAAAAA
1 AAAAATATGAAAAAAAA
16319616 AAGGGGTGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.12
Consensus pattern (18 bp):
AAAAATATGAAAAAAAAC
Found at i:16320277 original size:30 final size:31
Alignment explanation
Indices: 16320217--16320276 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
16320207 TTGTATGTAT
*
16320217 TGTTATTTTAAAAGTCGGTATAATTTTTTTA
1 TGTTATTTTAAAAGTCGATATAATTTTTTTA
*
16320248 TGTTATTTTAAAAGTTGATATAATTTTTT
1 TGTTATTTTAAAAGTCGATATAATTTTTT
16320277 AACTCAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.57
Consensus pattern (31 bp):
TGTTATTTTAAAAGTCGATATAATTTTTTTA
Found at i:16320979 original size:18 final size:21
Alignment explanation
Indices: 16320945--16320990 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
16320935 ACTCCACCCC
*
16320945 TTTTTTTTTCAGATTTTT-GT
1 TTTTTTTTTCAGATTTTTACT
16320965 TTTTTTTTTC-G-TTTTTACT
1 TTTTTTTTTCAGATTTTTACT
16320984 TTTTTTT
1 TTTTTTT
16320991 AACAGAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 5 0.21
19 9 0.38
20 10 0.42
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.80
Consensus pattern (21 bp):
TTTTTTTTTCAGATTTTTACT
Found at i:16320980 original size:19 final size:20
Alignment explanation
Indices: 16320945--16320990 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
16320935 ACTCCACCCC
**
16320945 TTTTTTTTTCAGATTTTTGT
1 TTTTTTTTTCAGATTTTACT
*
16320965 TTTTTTTTTC-GTTTTTACT
1 TTTTTTTTTCAGATTTTACT
16320984 TTTTTTT
1 TTTTTTT
16320991 AACAGAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.80
Consensus pattern (20 bp):
TTTTTTTTTCAGATTTTACT
Found at i:16323676 original size:15 final size:15
Alignment explanation
Indices: 16323656--16323696 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
16323646 GATAAAGTGA
16323656 AAAAATTAAGTGTTG
1 AAAAATTAAGTGTTG
*
16323671 AAAAATTAATTGTTG
1 AAAAATTAAGTGTTG
16323686 AAAAATTAAGT
1 AAAAATTAAGT
16323697 ACTGCAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.34
Consensus pattern (15 bp):
AAAAATTAAGTGTTG
Found at i:16325275 original size:7 final size:7
Alignment explanation
Indices: 16325263--16325293 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
16325253 ATTTTATTTT
16325263 ATTGATA
1 ATTGATA
16325270 ATTGATA
1 ATTGATA
16325277 ATTGATA
1 ATTGATA
16325284 ATTGATA
1 ATTGATA
16325291 ATT
1 ATT
16325294 TTATTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (7 bp):
ATTGATA
Found at i:16329586 original size:46 final size:46
Alignment explanation
Indices: 16329526--16329780 Score: 368
Period size: 46 Copynumber: 5.5 Consensus size: 46
16329516 TTTGACATGA
* * * * * *
16329526 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** **
16329572 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
16329618 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
16329664 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
16329710 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
16329756 TGCCATGGTATCTTTCAACCATGGT
1 TGCCATGGTATCTTTCAACCATGGT
16329781 ATCTTTCAAC
Statistics
Matches: 192, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 188 0.98
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:16329688 original size:92 final size:92
Alignment explanation
Indices: 16329526--16329883 Score: 403
Period size: 92 Copynumber: 3.7 Consensus size: 92
16329516 TTTGACATGA
* * * * * *
16329526 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAA
*** *
16329590 CCATGGTCTTGTTCATTTCATATCACAT
65 CCATGGTCTTACACATTTCATATCACAC
16329618 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
* **
16329683 TATGGTCTTACACATTTCATATCAGGC
66 CATGGTCTTACACATTTCATATCACAC
*
16329710 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
* *
16329775 CATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGC
66 CATGG--TC-TT--A-CA-CAT-TT---CATATC--A-CA--C
*
16329818 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
16329883 C
66 C
16329884 GGGATTTCTT
Statistics
Matches: 230, Mismatches: 19, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
91 4 0.02
92 142 0.62
94 2 0.01
95 2 0.01
97 1 0.00
98 2 0.01
99 2 0.01
100 2 0.01
103 5 0.02
105 1 0.00
108 67 0.29
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.38
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACAC
Found at i:16329777 original size:16 final size:16
Alignment explanation
Indices: 16329758--16329794 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
16329748 TATCAGGCTG
16329758 CCATGGTATCTTTCAA
1 CCATGGTATCTTTCAA
16329774 CCATGGTATCTTTCAA
1 CCATGGTATCTTTCAA
16329790 CCATG
1 CCATG
16329795 ATCTTACACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35
Consensus pattern (16 bp):
CCATGGTATCTTTCAA
Found at i:16329781 original size:62 final size:62
Alignment explanation
Indices: 16329712--16329842 Score: 253
Period size: 62 Copynumber: 2.1 Consensus size: 62
16329702 TATCAGGCTG
*
16329712 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAA
1 CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAA
16329774 CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAA
1 CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAA
16329836 CCATGGT
1 CCATGGT
16329843 CTTACACATT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 68 1.00
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (62 bp):
CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAA
Found at i:16329809 original size:108 final size:108
Alignment explanation
Indices: 16329666--16329883 Score: 418
Period size: 108 Copynumber: 2.0 Consensus size: 108
16329656 TATCAGGTTG
* *
16329666 CCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAACCA
1 CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAACCA
16329731 TGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAA
66 TGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAA
16329774 CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAACCA
1 CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAACCA
16329839 TGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAA
66 TGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAA
16329882 CC
1 CC
16329884 GGGATTTCTT
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 108 1.00
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.35
Consensus pattern (108 bp):
CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAACCA
TGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAA
Found at i:16329824 original size:46 final size:46
Alignment explanation
Indices: 16329774--16329883 Score: 211
Period size: 46 Copynumber: 2.4 Consensus size: 46
16329764 TATCTTTCAA
16329774 CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGCTG
1 CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGCTG
*
16329820 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTG
1 CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGCTG
16329866 CCATGGTATCTTTCAACC
1 CCATGGTATCTTTCAACC
16329884 GGGATTTCTT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 63 1.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.35
Consensus pattern (46 bp):
CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGCTG
Found at i:16333089 original size:27 final size:27
Alignment explanation
Indices: 16333059--16333123 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
16333049 GGGCATATTC
16333059 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
16333086 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
* *
16333113 ATCTTTTTACC
1 GTCATTTTACC
16333124 TAATAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:16333403 original size:27 final size:27
Alignment explanation
Indices: 16333182--16333586 Score: 174
Period size: 27 Copynumber: 14.9 Consensus size: 27
16333172 TCTACAACTA
* * * *
16333182 AGGGTATTTCAGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTATAAATCG
* * *
16333209 ATGGTATTTCTA-TAATTTTTAGAAAGTCA
1 AGGGTATTT-TAGTAA-TTTTATAAA-TCG
* *
16333238 AGGGTATTTCT-GTAACTTTGTAAATC-
1 AGGGTATTT-TAGTAATTTTATAAATCG
* * *
16333264 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTAGTAATTTTATAAATCG
** * * * *
16333292 AGGGTATTTCGGTAATTTCACAAACCA
1 AGGGTATTTTAGTAATTTTATAAATCG
* * *
16333319 AGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTTTAGTAATTTTATAAATCG
* * *
16333345 AGGGGTATTTTGGTAATTTTACAAA-CTA
1 A-GGGTATTTTAGTAATTTTATAAATC-G
*
16333373 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTAGTAATTTTATAAATCG
**** * * *
16333400 AGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTATTTTAGTAATTTTATAAATCG
*** *
16333427 AGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTATTTTAGTAATTTTATAAATCG
***** * *
16333454 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTTAGTAATTTTATAAATCG
* * * * *
16333481 GGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTAGTAATTTTATAAATCG
* * *
16333508 AAGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTTAGTAATTTTATAAATCG
* * * *
16333535 AGGGTATTTCAGTATTTTTACAAA-CTA
1 AGGGTATTTTAGTAATTTTATAAATC-G
**
16333562 AGGGTATTTCGGTAATTTTAGTAAA
1 AGGGTATTTTAGTAATTTTA-TAAA
16333587 CTAAAGTATT
Statistics
Matches: 307, Mismatches: 59, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
26 5 0.02
27 267 0.87
28 20 0.07
29 15 0.05
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTATAAATCG
Found at i:16333404 original size:81 final size:80
Alignment explanation
Indices: 16333154--16333405 Score: 217
Period size: 81 Copynumber: 3.1 Consensus size: 80
16333144 TTTCATCCTA
* * * * ** ** * *
16333154 CAAGGGTGTTTTGGTAAATCTAC-AACTAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
16333218 CTA-TAATTTTTAGAAAGT
66 -TAGTAATTTTT--AAA-T
* * *
16333236 CAAGGGTATTTCT-GTAACTTTGTA-AATC-AGGGGTATTTTGGTAATTTTACAAATTGAGGGTA
1 CAAGGGTATTT-TGGTAA-TTT-TACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTA
** ** *
16333298 TTTCGGTAATTTCACAAAC
63 TTTTAGTAATTT-TTAAAT
16333317 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
16333382 TAGTAATTTTGTAAAT
66 TAGTAATTTT-TAAAT
*
16333398 CGAGGGTA
1 CAAGGGTA
16333406 AAACAGTAAT
Statistics
Matches: 133, Mismatches: 27, Indels: 21
0.73 0.15 0.12
Matches are distributed among these distances:
79 2 0.02
80 7 0.05
81 67 0.50
82 17 0.13
83 36 0.27
84 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
TAGTAATTTTTAAAT
Found at i:16333580 original size:54 final size:54
Alignment explanation
Indices: 16333154--16333586 Score: 257
Period size: 54 Copynumber: 8.0 Consensus size: 54
16333144 TTTCATCCTA
* * * * * * *
16333154 CAAGGGTGTTTTGGTAAATCTAC-AACTAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTATAAAT
* * * * * *
16333207 CAATGGTATTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAA-TTTTACAAACT-AAGGGTATTTCGGTAATTTTATAAAT
* * * * * * *
16333263 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTATAAAT
* * * *
16333317 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTAGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTATAAAT
** * *** * * *
16333370 CTAAGGGTATTTTAGTAATTTTGTAAA-TCGAGGGTAAAACAGTAATTCTGTAAAT
1 C-AAGGGTATTTTAGTAATTTTACAAACT-AAGGGTATTTCGGTAATTTTATAAAT
*** * * * *** * *
16333425 CAAGGGTAAAATAGTAATTCTATAAA-TCGAGGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTACAAACT-AAGGGTATTTCGGTAATTTTATAAAT
** * * * * * *
16333479 CGGGGGTACTTTGGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAA-ACTAAGGGTATTTCGGTAATTTTATAAAT
* * *
16333533 CGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTAGTAAA
1 CAAGGGTATTTTAGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTA-TAAA
16333587 CTAAAGTATT
Statistics
Matches: 294, Mismatches: 74, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
53 17 0.06
54 224 0.76
55 18 0.06
56 35 0.12
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.37
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTATAAAT
Found at i:16339530 original size:30 final size:30
Alignment explanation
Indices: 16339494--16339555 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
16339484 TATTGGATAA
16339494 ATGTAATGAGGCTTGATTCATAAGGCGATG
1 ATGTAATGAGGCTTGATTCATAAGGCGATG
16339524 ATGTAATGAGGCTTGATTCATAAGGCGATG
1 ATGTAATGAGGCTTGATTCATAAGGCGATG
16339554 AT
1 AT
16339556 ATGAAATAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.31
Consensus pattern (30 bp):
ATGTAATGAGGCTTGATTCATAAGGCGATG
Found at i:16339540 original size:15 final size:15
Alignment explanation
Indices: 16339494--16339540 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
16339484 TATTGGATAA
16339494 ATGTAATGAGGCTTG
1 ATGTAATGAGGCTTG
* * *
16339509 AT-TCATAAGGCGATG
1 ATGTAATGAGGC-TTG
16339524 ATGTAATGAGGCTTG
1 ATGTAATGAGGCTTG
16339539 AT
1 AT
16339541 TCATAAGGCG
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
14 7 0.29
15 10 0.42
16 7 0.29
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.32
Consensus pattern (15 bp):
ATGTAATGAGGCTTG
Found at i:16339555 original size:15 final size:15
Alignment explanation
Indices: 16339507--16339555 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
16339497 TAATGAGGCT
16339507 TGATTCATAAGGCGA
1 TGATTCATAAGGCGA
* * *
16339522 TGATGTAATGAGGC-T
1 TGAT-TCATAAGGCGA
16339537 TGATTCATAAGGCGA
1 TGATTCATAAGGCGA
16339552 TGAT
1 TGAT
16339556 ATGAAATAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 7 0.27
15 12 0.46
16 7 0.27
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.31
Consensus pattern (15 bp):
TGATTCATAAGGCGA
Done.