Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 75 of 444
Found at i:17770583 original size:32 final size:32
Alignment explanation
Indices: 17770541--17770604 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
17770531 GCCTTATCAC
17770541 ATATAGATACATTTTCACATTCATCACATCGG
1 ATATAGATACATTTTCACATTCATCACATCGG
*
17770573 ATATATATACATTTTCACATTCATCACATCGG
1 ATATAGATACATTTTCACATTCATCACATCGG
17770605 CCATTAGGCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (32 bp):
ATATAGATACATTTTCACATTCATCACATCGG
Found at i:17770584 original size:130 final size:130
Alignment explanation
Indices: 17770443--17770996 Score: 653
Period size: 147 Copynumber: 4.0 Consensus size: 130
17770433 GCCTTATCAC
*
17770443 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATACATACATTTTC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACATTTTC
17770508 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATAGATACATTTTCACATTCATCACATCGG
66 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATAGATACATTTTCACATTCATCACATCGG
*
17770573 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACATTTTC
* *
17770638 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGG
66 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATAGATACATTTTCACATTCATCACATCGG
* *
17770703 CCAT-TAGGCCTTATCACATATACATACATTTTCACATTCATCACCTCGGCCATTAGGCCTTATC
1 --ATATA-----TAT-ACATTTTC--ACA--TT--CA-TCA-CA--TCGGCCATTAGGCCTTATC
* *
17770767 ACATATACATACATTTTCACATTCATCACGTCAGCCATTAGGCCTTATCACATATACATACATTT
48 ACATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAGATACATTT
*
17770832 TCACATTCATCACGTCGG
113 TCACATTCATCACATCGG
* * *
17770850 CCAT-TAGGCCTTATCAAATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATC
1 --ATATA-----TAT-ACATTTTC--ACA--TT--CA-TCA-CA--TCGGCCATTAGGCCTTATC
*
17770914 ACATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATACATACATTT
48 ACATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAGATACATTT
17770979 TCACATTCATCACATCGG
113 TCACATTCATCACATCGG
17770997 CCATTAGGCC
Statistics
Matches: 393, Mismatches: 13, Indels: 19
0.92 0.03 0.04
Matches are distributed among these distances:
130 126 0.32
131 2 0.01
132 2 0.01
136 3 0.01
137 6 0.02
139 3 0.01
141 2 0.01
143 2 0.01
144 3 0.01
145 2 0.01
147 242 0.62
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (130 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACATTTTC
ACATTCATCACGTCGGCCATTAGGCCTTATCACATATAGATACATTTTCACATTCATCACATCGG
Found at i:17770585 original size:81 final size:81
Alignment explanation
Indices: 17770492--17770653 Score: 288
Period size: 81 Copynumber: 2.0 Consensus size: 81
17770482 GCCTTATCAC
*
17770492 ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAGATACATTTTC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAGATACATTTTC
17770557 ACATTCATCACATCGG
66 ACATTCATCACATCGG
* *
17770573 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAGATACATTTTC
*
17770638 ACATTCATCACGTCGG
66 ACATTCATCACATCGG
17770654 CCATTAGGCC
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.35
Consensus pattern (81 bp):
ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAGATACATTTTC
ACATTCATCACATCGG
Found at i:17770628 original size:49 final size:49
Alignment explanation
Indices: 17770573--17771018 Score: 820
Period size: 49 Copynumber: 9.1 Consensus size: 49
17770563 ATCACATCGG
* *
17770573 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
17770622 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
17770671 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
17770720 ATATACATACATTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
17770769 ATATACATACATTTTCACATTCATCACGTCAGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
17770818 ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAA
1 ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
17770867 ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
17770916 ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
17770965 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
17771014 ATATA
1 ATATA
17771019 TTATTATGTA
Statistics
Matches: 388, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 388 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
ATATACATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:17776784 original size:24 final size:23
Alignment explanation
Indices: 17776757--17776805 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
17776747 TGATAACAAT
*
17776757 ATACAGAAAATTCTACCAGTAAAA
1 ATACAGAAAA-GCTACCAGTAAAA
* *
17776781 ATACAGACAAGCTACTAGTAAAA
1 ATACAGAAAAGCTACCAGTAAAA
17776804 AT
1 AT
17776806 GCGATAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 13 0.59
24 9 0.41
ACGTcount: A:0.53, C:0.16, G:0.10, T:0.20
Consensus pattern (23 bp):
ATACAGAAAAGCTACCAGTAAAA
Found at i:17790334 original size:18 final size:18
Alignment explanation
Indices: 17790293--17790336 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
17790283 TATTTAGTAC
17790293 ATACTAGAAACTATAGTTA
1 ATACTA-AAACTATAGTTA
17790312 A-ACTAAAACTATAG-TA
1 ATACTAAAACTATAGTTA
17790328 ACTACTAAA
1 A-TACTAAA
17790337 GACTGCGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 3 0.13
17 9 0.39
18 10 0.43
19 1 0.04
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (18 bp):
ATACTAAAACTATAGTTA
Found at i:17791511 original size:15 final size:15
Alignment explanation
Indices: 17791493--17791524 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
17791483 CATTTCATTA
*
17791493 TTATGTATTTTGTAT
1 TTATGTATTTTATAT
17791508 TTATGTATTTTATAT
1 TTATGTATTTTATAT
17791523 TT
1 TT
17791525 TTCATACATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTATTTTATAT
Found at i:17793243 original size:25 final size:25
Alignment explanation
Indices: 17793191--17793244 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
17793181 GGACTCACCA
*
17793191 CAGCTCGTATGAGCTTACCGATACT
1 CAGCTCGTATGAGCTTACCAATACT
* *
17793216 CAGCTCGTATGAGCTTACTAATATT
1 CAGCTCGTATGAGCTTACCAATACT
17793241 CAGC
1 CAGC
17793245 GCAAAGGAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCAATACT
Found at i:17796196 original size:90 final size:87
Alignment explanation
Indices: 17796038--17796206 Score: 239
Period size: 89 Copynumber: 1.9 Consensus size: 87
17796028 CCAAAAATAA
* * * *
17796038 TATTATTTTAATAGTTTAATATTAAATTAAATTTAATACTTATGTTAATAGTATTTTATTAATTT
1 TATTATTTTAATAGTTTAACATTAAATTAAATCTAATACTTATCTTAATAATATTTTATTAATTT
*
17796103 AATATTATAGTGATAAACATTC
66 AATATTAAAGTGATAAACATTC
* * *
17796125 TATTATTTTAATAAGATTTAACATTAAATTTAATCTAATATTTATCTTGATAAATATTTTATTAA
1 TATTATTTTAAT-AG-TTTAACATTAAATTAAATCTAATACTTATCTTAAT-AATATTTTATTAA
17796190 TTTAATATTAAAGTGAT
63 TTTAATATTAAAGTGAT
17796207 TAAGTTTGAT
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
87 12 0.17
88 2 0.03
89 29 0.41
90 28 0.39
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.50
Consensus pattern (87 bp):
TATTATTTTAATAGTTTAACATTAAATTAAATCTAATACTTATCTTAATAATATTTTATTAATTT
AATATTAAAGTGATAAACATTC
Found at i:17800188 original size:3 final size:3
Alignment explanation
Indices: 17800180--17800215 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
17800170 GAACTAATCC
*
17800180 AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
17800216 GCAAAGCATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:17802367 original size:13 final size:13
Alignment explanation
Indices: 17802346--17802384 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
17802336 TTAGAATCAT
*
17802346 AAAAATTATAAAC
1 AAAAATTATAAAA
*
17802359 AAAATTTATAAAA
1 AAAAATTATAAAA
17802372 AAAAATTATAAAA
1 AAAAATTATAAAA
17802385 TTTTTAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (13 bp):
AAAAATTATAAAA
Found at i:17820156 original size:45 final size:44
Alignment explanation
Indices: 17820096--17820383 Score: 176
Period size: 45 Copynumber: 6.5 Consensus size: 44
17820086 TAAAACCATC
* * *
17820096 AATCTTATGTCCCTGAAGTTGCAGTGGAGCAGACCGAAGATAGCA
1 AATCTTATCT-CCTGAAGTTGCAGTGGAGCAGATCGAAGATAGCT
* * **
17820141 AATCTTATCTTCCTGAAGTTACAGT-GAGGC-GAATCAAAGCCA-CT
1 AATCTTATC-TCCTGAAGTTGCAGTGGA-GCAG-ATCGAAGATAGCT
* ** * * * *
17820185 AACCTTATCTCCTTGAAGACGCAGTGGAGTAGGTCAAAG-TTGCT
1 AATCTTATCTCC-TGAAGTTGCAGTGGAGCAGATCGAAGATAGCT
* * *
17820229 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATGGC-
1 AATCTTATCTCC-TGAAGTTGCAGTGGAGCAGATCGAAGATAGCT
* * * * **
17820273 AAGTCTTATCTTCTTGAAGTTGCAGTGAAGCTGATTGAAGCGA-CT
1 AA-TCTTATC-TCCTGAAGTTGCAGTGGAGCAGATCGAAGATAGCT
* * * *
17820318 AATCTTATCTCCTTGAAATTGTAGTGGAGCAGACCGGAA-ATAGCG
1 AATCTTATCTCC-TGAAGTTGCAGTGGAGCAGATC-GAAGATAGCT
*
17820363 GATCTTATCTCTCTGAAGTTG
1 AATCTTATCTC-CTGAAGTTG
17820384 TGGTAGAGTA
Statistics
Matches: 185, Mismatches: 43, Indels: 30
0.72 0.17 0.12
Matches are distributed among these distances:
43 5 0.03
44 87 0.47
45 89 0.48
46 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCTGAAGTTGCAGTGGAGCAGATCGAAGATAGCT
Found at i:17820222 original size:44 final size:44
Alignment explanation
Indices: 17820174--17820257 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 44
17820164 GTGAGGCGAA
17820174 TCAAAGCCACTAACCTTATCTCCTTGAAGACGCAGTGGAGTAGG
1 TCAAAGCCACTAACCTTATCTCCTTGAAGACGCAGTGGAGTAGG
*** ** **
17820218 TCAAAGTTGCTAGTCTTATCTCCTTGAAGTTGCAGTGGAG
1 TCAAAGCCACTAACCTTATCTCCTTGAAGACGCAGTGGAG
17820258 CAGATTGAAG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
44 33 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (44 bp):
TCAAAGCCACTAACCTTATCTCCTTGAAGACGCAGTGGAGTAGG
Found at i:17820532 original size:44 final size:44
Alignment explanation
Indices: 17820484--17820578 Score: 102
Period size: 44 Copynumber: 2.2 Consensus size: 44
17820474 GTTGCAGCAA
* *
17820484 AGTAGATCGAAGTCGCAAACCTTATCTC-CTTGAAGATGCAGTGG
1 AGTAGATCGAAGTCACAAACCTTATCTCTC-TGAAGATGCAGTAG
* * * * *
17820528 AGTAGGTTGAAGTTACAAATCTTATCTCTCTGAAGTTGCAGTAG
1 AGTAGATCGAAGTCACAAACCTTATCTCTCTGAAGATGCAGTAG
*
17820572 AGCAGAT
1 AGTAGAT
17820579 AAAACAAGTA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (44 bp):
AGTAGATCGAAGTCACAAACCTTATCTCTCTGAAGATGCAGTAG
Found at i:17822002 original size:27 final size:27
Alignment explanation
Indices: 17821972--17822253 Score: 138
Period size: 27 Copynumber: 10.4 Consensus size: 27
17821962 AATGCCTTCA
*
17821972 ATTTATAAAATTACCAAAGTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* * * ***
17821999 ATTTACAGAATTATCGTTTTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* * **
17822026 ATTTATAGAATTGCCATTTTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* ***
17822053 ATTTATAGAATTACCGTTTTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* * * ***
17822080 ATTTACAGAATTAGCGTTTTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* *** *
17822107 ATTTATAGAATTACCGTTTTACCCTTG
1 ATTTATAAAATTACCAAATTACCCTCG
* * * *
17822134 ATTTAAAAAAATTACTAAAATACCCTTG
1 ATTT-ATAAAATTACCAAATTACCCTCG
* * * *
17822162 GTTTACAAAATCACCAAAATACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* *
17822189 A-TCAGTAAAATTACCAAAATACCC-CTG
1 ATTTA-TAAAATTACCAAATTACCCTC-G
* * * *
17822216 ATTTGTGAAATTATCGAAA-TACTCTCG
1 ATTTATAAAATTA-CCAAATTACCCTCG
*
17822243 ATTTGTAAAAT
1 ATTTATAAAAT
17822254 ATCAAAATAC
Statistics
Matches: 209, Mismatches: 40, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
26 3 0.01
27 181 0.87
28 25 0.12
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (27 bp):
ATTTATAAAATTACCAAATTACCCTCG
Found at i:17822031 original size:54 final size:54
Alignment explanation
Indices: 17821972--17822212 Score: 205
Period size: 54 Copynumber: 4.4 Consensus size: 54
17821962 AATGCCTTCA
* *
17821972 ATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTATCGTTTTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCG
* * ** *
17822026 ATTTATAGAATTGCCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCG
* * * *** * *
17822080 ATTTACAGAATTAGCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTTG
1 ATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCG
* * * * * * * ****
17822134 ATTTAAAAAAATTACTAAAATACCCTTGGTTTACAAAATCACCAAAATACCCTCG
1 ATTT-ATAAAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCG
* *
17822189 A-TCAGTAAAATTACCAAAATACCC
1 ATTTA-TAAAATTACCAAATTACCC
17822213 CTGATTTGTG
Statistics
Matches: 152, Mismatches: 33, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
53 1 0.01
54 118 0.78
55 33 0.22
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (54 bp):
ATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCG
Found at i:17822296 original size:27 final size:27
Alignment explanation
Indices: 17822258--17822364 Score: 151
Period size: 27 Copynumber: 4.0 Consensus size: 27
17822248 TAAAATATCA
17822258 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
17822285 AAATACCCCTGTAGGGTAGAAATACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
17822312 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
17822339 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
17822365 ATTTTTCCCC
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:17822321 original size:54 final size:53
Alignment explanation
Indices: 17822247--17822360 Score: 176
Period size: 54 Copynumber: 2.1 Consensus size: 53
17822237 CTCTCGATTT
17822247 GTAAAATA-TCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
1 GTAAAATACT-AAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
* * *
17822300 GTAGAAATACTAAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGG
1 GTA-AAATACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
17822354 GTAAAAT
1 GTAAAAT
17822361 TACCATTTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
53 7 0.12
54 48 0.86
55 1 0.02
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (53 bp):
GTAAAATACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
Found at i:17822603 original size:25 final size:25
Alignment explanation
Indices: 17822569--17822663 Score: 138
Period size: 25 Copynumber: 3.8 Consensus size: 25
17822559 AGGAAGTGCT
* *
17822569 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
17822594 AAAAGGGCTTTGCCCCAGTTTACCTA
1 AAAAGGGCTTTGCCCCAGTTTACC-A
* *
17822620 AAAA-AGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
17822644 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
17822664 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
24 5 0.08
25 54 0.86
26 4 0.06
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:17834518 original size:13 final size:14
Alignment explanation
Indices: 17834481--17834517 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
17834471 TGGAAAATAT
* *
17834481 AAATTGAAAAGCAG
1 AAATTAAAAAGAAG
17834495 AAATTAAAAAGAAG
1 AAATTAAAAAGAAG
17834509 AAATTAAAA
1 AAATTAAAA
17834518 GGCTCAACTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.68, C:0.03, G:0.14, T:0.16
Consensus pattern (14 bp):
AAATTAAAAAGAAG
Found at i:17834569 original size:56 final size:56
Alignment explanation
Indices: 17834501--17834609 Score: 191
Period size: 56 Copynumber: 1.9 Consensus size: 56
17834491 GCAGAAATTA
17834501 AAAAGAAGAAATTAAAAGGCTCAACTCACCTCTCGCAATAAAAGTTGATTTTTTTG
1 AAAAGAAGAAATTAAAAGGCTCAACTCACCTCTCGCAATAAAAGTTGATTTTTTTG
* **
17834557 AAAAGCAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAAAGAAGAAATTAAAAGGCTCAACTCACCTCTCGCAATAAAAGTTGATTTTT
17834610 GAAACATTCA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.28
Consensus pattern (56 bp):
AAAAGAAGAAATTAAAAGGCTCAACTCACCTCTCGCAATAAAAGTTGATTTTTTTG
Found at i:17834746 original size:76 final size:78
Alignment explanation
Indices: 17834573--17835302 Score: 442
Period size: 75 Copynumber: 9.4 Consensus size: 78
17834563 AGAAATTAAA
*
17834573 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATTCAAAAAAAATTGACAATACC
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATTCAAAAAAAATTGACAATACC
*
17834638 TCAGCGTGTCCCG
66 TCAGCGTGCCCCG
* *
17834651 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACA-TC-CAAAAAATTGACAATACG
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATTCAAAAAAAATTGACAATACC
*
17834714 TCAGTGTGCCCCG
66 TCAGCGTGCCCCG
*** * *** *
17834727 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT--TTGA-TGAACCTAAATT-AAAACTAC
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATTCAAAAAAAATTGACAA-TAC
* *
17834788 CTCAGCGTGTTCCTG
65 CTCAGCGTG-CCCCG
* *
17834803 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAGCATAAATTGAAAAAACATTAAT
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTG-AAA-C----ATT-CAAAAA-A--AAT
* * * *
17834867 TGAAAATACCTCAACGTTCCCTG
56 TGACAATACCTCAGCGTGCCCCG
* * ** * *
17834890 AGGCTCAACTCACCTCTCATAATATGAGTTGATTTTTGAAA-A-GC---GGAACTTGAAAATACC
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATTCAAAAAAAATTGACAATACC
** *
17834950 TCAGCGTGTAAGCCA
66 TCAGCGTG--CCCCG
* * * * * * * *
17834965 ATGCTCAACTCACCTCTCACAATACGAGTTAATTTTT-----TTTTAAAGTAGAATTTGAAAATA
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATTCAAA--AAAAATTGACAATA
**
17835025 CCTTGGCGTGCCCCG
64 CCTCAGCGTGCCCCG
* * * *
17835040 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AA-A---AACAGAAATTGA-AATTAC
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATTCAAAAAAAATTGACAA-TAC
* *
17835099 CTCAGCGTGTCCTG
65 CTCAGCGTGCCCCG
* * * * *
17835113 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAA-A---AAGCAGAAATTGAAAATAC
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATTCAA-AAAAAATTGACAATAC
** * **
17835174 CTCAATGTGTCTTG
65 CTCAGCGTGCCCCG
* * * *
17835188 AGGCTCGACTCACCTCTCGCAATATGAGTTG-GTTTTGACAA-A--CAGAAACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGA-AACATTCA-AAA-A-AAATTGACAA
**
17835249 TACCTCAGCACGTGAGCCG
62 TACCTCAG--CGTGCCCCG
* * *
17835268 AGGGTCAACTCACCTCTCGCACTATGAGTTGATTT
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTT
17835303 AAAAAACAGA
Statistics
Matches: 524, Mismatches: 87, Indels: 79
0.76 0.13 0.11
Matches are distributed among these distances:
72 2 0.00
73 75 0.14
74 16 0.03
75 147 0.28
76 102 0.19
77 23 0.04
78 59 0.11
80 32 0.06
81 3 0.01
83 1 0.00
84 1 0.00
85 2 0.00
86 1 0.00
87 37 0.07
88 19 0.04
89 4 0.01
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATTCAAAAAAAATTGACAATACC
TCAGCGTGCCCCG
Found at i:17850307 original size:31 final size:31
Alignment explanation
Indices: 17850265--17850335 Score: 119
Period size: 31 Copynumber: 2.3 Consensus size: 31
17850255 AAAAGATACA
17850265 ATTT-AGTCATTGAATTATTTGAAA-GTTTTT
1 ATTTAAGTCATTGAATTATTT-AAATGTTTTT
17850295 ATTTAAGTCATTGAATTATTTAAATGTTTTT
1 ATTTAAGTCATTGAATTATTTAAATGTTTTT
17850326 ATTTAAGTCA
1 ATTTAAGTCA
17850336 CTAAGTTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
30 7 0.18
31 32 0.82
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.52
Consensus pattern (31 bp):
ATTTAAGTCATTGAATTATTTAAATGTTTTT
Found at i:17850345 original size:31 final size:31
Alignment explanation
Indices: 17850265--17850345 Score: 105
Period size: 31 Copynumber: 2.6 Consensus size: 31
17850255 AAAAGATACA
*
17850265 ATTT-AGTCATTGAATTATTTGAAAGTTTTT
1 ATTTAAGTCACTGAATTATTTGAAAGTTTTT
*
17850295 ATTTAAGTCATTGAATTATTT-AAATGTTTTT
1 ATTTAAGTCACTGAATTATTTGAAA-GTTTTT
17850326 ATTTAAGTCACT-AAGTTATT
1 ATTTAAGTCACTGAA-TTATT
17850346 AAGATTTTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
30 9 0.19
31 38 0.81
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.52
Consensus pattern (31 bp):
ATTTAAGTCACTGAATTATTTGAAAGTTTTT
Found at i:17858737 original size:56 final size:56
Alignment explanation
Indices: 17858554--17858756 Score: 221
Period size: 56 Copynumber: 3.6 Consensus size: 56
17858544 CATTAAGTAC
* * * * ** *
17858554 TCACCACAAAGGCTTTCCATTC-AGAGTCTCGCCACAAAGGCATCCTTTAAGAGGT
1 TCACCACAAAGGCTTACCTTTCTAGAGTTTTGCCACAAAGGTGTCCTTTAACAGGT
** * * * *
17858609 TCGA-CATGAAGCCTTACCCTTCAAGAGTTTTTCCACAAAGGTTGTCCTTTAACAGGT
1 TC-ACCACAAAGGCTTACCTTTCTAGAGTTTTGCCACAAAGG-TGTCCTTTAACAGGT
* * *
17858666 TTACCACAAACGCTTACCTTTCTAGAGTTTTGCCACAAAGGTGTCCTTTACCAGGT
1 TCACCACAAAGGCTTACCTTTCTAGAGTTTTGCCACAAAGGTGTCCTTTAACAGGT
*
17858722 TCACCACAAAGGCTTACCTTTCTGGAGTTTTGCCA
1 TCACCACAAAGGCTTACCTTTCTAGAGTTTTGCCA
17858757 TAAATGTTGT
Statistics
Matches: 121, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
55 15 0.12
56 63 0.52
57 43 0.36
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (56 bp):
TCACCACAAAGGCTTACCTTTCTAGAGTTTTGCCACAAAGGTGTCCTTTAACAGGT
Found at i:17858741 original size:28 final size:27
Alignment explanation
Indices: 17858641--17858742 Score: 82
Period size: 28 Copynumber: 3.6 Consensus size: 27
17858631 AAGAGTTTTT
* *
17858641 CCACAAAGGTTGTCCTTTAACAGGTTTA
1 CCACAAAGGTT-ACCTTTACCAGGTTTA
* * *
17858669 CCACAAACGCTTACCTTT-CTAGAGTTTTG
1 CCACAAA-GGTTACCTTTACCAG-G-TTTA
*
17858698 CCACAAAGGTGT-CCTTTACCAGGTTCA
1 CCACAAAGGT-TACCTTTACCAGGTTTA
17858725 CCACAAAGGCTTACCTTT
1 CCACAAAGG-TTACCTTT
17858743 CTGGAGTTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
27 14 0.24
28 27 0.47
29 17 0.29
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (27 bp):
CCACAAAGGTTACCTTTACCAGGTTTA
Found at i:17858995 original size:53 final size:53
Alignment explanation
Indices: 17858912--17859020 Score: 164
Period size: 53 Copynumber: 2.1 Consensus size: 53
17858902 ACCCACCAGT
* * *
17858912 TATGGTCTTATTTCTATATGATGTCATAACCAACTAGTTACGGTCTTACACGA
1 TATGGTCTTATTTCCATATGATATCATAACCAACTAGTTACGATCTTACACGA
* * *
17858965 TATGGTCTTTTTTCCATATGATATCGTAACCCACTAGTTACGATCTTACACGA
1 TATGGTCTTATTTCCATATGATATCATAACCAACTAGTTACGATCTTACACGA
17859018 TAT
1 TAT
17859021 AGTTCTTCAG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.39
Consensus pattern (53 bp):
TATGGTCTTATTTCCATATGATATCATAACCAACTAGTTACGATCTTACACGA
Found at i:17864961 original size:11 final size:11
Alignment explanation
Indices: 17864945--17865000 Score: 76
Period size: 11 Copynumber: 5.0 Consensus size: 11
17864935 ACCTTTTTTA
*
17864945 TTTCTTCTCTT
1 TTTCTTTTCTT
17864956 TTTCTTTTCTT
1 TTTCTTTTCTT
*
17864967 TTTCTTTTCCT
1 TTTCTTTTCTT
17864978 TTTCTTTTTCTT
1 TTTC-TTTTCTT
*
17864990 TTCCTTTTCTT
1 TTTCTTTTCTT
17865001 CACACCATAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
11 31 0.77
12 9 0.22
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTCTTTTCTT
Found at i:17864963 original size:6 final size:6
Alignment explanation
Indices: 17864952--17864997 Score: 60
Period size: 6 Copynumber: 8.0 Consensus size: 6
17864942 TTATTTCTTC
* *
17864952 TCTTTT TC-TTT TCTTTT TC-TTT TCCTTT TCTTTT TCTTTT CCTTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
17864998 CTTCACACCA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
5 10 0.28
6 26 0.72
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (6 bp):
TCTTTT
Found at i:17864972 original size:17 final size:17
Alignment explanation
Indices: 17864952--17865000 Score: 89
Period size: 17 Copynumber: 2.9 Consensus size: 17
17864942 TTATTTCTTC
*
17864952 TCTTTTTCTTTTCTTTT
1 TCTTTTCCTTTTCTTTT
17864969 TCTTTTCCTTTTCTTTT
1 TCTTTTCCTTTTCTTTT
17864986 TCTTTTCCTTTTCTT
1 TCTTTTCCTTTTCTT
17865001 CACACCATAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (17 bp):
TCTTTTCCTTTTCTTTT
Found at i:17865250 original size:20 final size:20
Alignment explanation
Indices: 17865225--17865263 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
17865215 CTTTTACAAT
17865225 TCTTG-TCAAATCCTTGATAA
1 TCTTGTTCAAAT-CTTGATAA
*
17865245 TCTTGTTGAAATCTTGATA
1 TCTTGTTCAAATCTTGATA
17865264 CCAATCGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (20 bp):
TCTTGTTCAAATCTTGATAA
Found at i:17873394 original size:7 final size:7
Alignment explanation
Indices: 17873382--17873410 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
17873372 TGCTTTCCAC
17873382 TTCTTTT
1 TTCTTTT
17873389 TTC-TTT
1 TTCTTTT
17873395 TTCTTTT
1 TTCTTTT
17873402 TTCTTTT
1 TTCTTTT
17873409 TT
1 TT
17873411 GTTTGTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TTCTTTT
Found at i:17873398 original size:13 final size:13
Alignment explanation
Indices: 17873382--17873409 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
17873372 TGCTTTCCAC
17873382 TTCTTTTTTCTTT
1 TTCTTTTTTCTTT
17873395 TTCTTTTTTCTTT
1 TTCTTTTTTCTTT
17873408 TT
1 TT
17873410 TGTTTGTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (13 bp):
TTCTTTTTTCTTT
Found at i:17873407 original size:20 final size:20
Alignment explanation
Indices: 17873382--17873420 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
17873372 TGCTTTCCAC
*
17873382 TTCTTTTTTCTTTTTCTTTT
1 TTCTTTTTTCTTTGTCTTTT
*
17873402 TTCTTTTTTGTTTGTCTTT
1 TTCTTTTTTCTTTGTCTTT
17873421 ACTGTATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (20 bp):
TTCTTTTTTCTTTGTCTTTT
Found at i:17875775 original size:11 final size:11
Alignment explanation
Indices: 17875759--17875792 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
17875749 GGGCATGTGG
*
17875759 ACCACACCGCC
1 ACCACACGGCC
*
17875770 ACCACAAGGCC
1 ACCACACGGCC
17875781 ACCACACGGCC
1 ACCACACGGCC
17875792 A
1 A
17875793 TGTGCCTCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.32, C:0.53, G:0.15, T:0.00
Consensus pattern (11 bp):
ACCACACGGCC
Found at i:17877013 original size:32 final size:32
Alignment explanation
Indices: 17876963--17877035 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
17876953 GTCTGTGTTG
*
17876963 CTTGCCCGTGTGAGCCACACGCCCAGA-TTGGC
1 CTTGCCCGTGTGACCCACACGCCCA-ACTTGGC
*
17876995 CTTGGCCGTGTGACCCACACGCCCAACTTGGC
1 CTTGCCCGTGTGACCCACACGCCCAACTTGGC
*
17877027 CTAGCCCGT
1 CTTGCCCGT
17877036 CTAGCCTACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
31 1 0.03
32 35 0.97
ACGTcount: A:0.15, C:0.40, G:0.26, T:0.19
Consensus pattern (32 bp):
CTTGCCCGTGTGACCCACACGCCCAACTTGGC
Found at i:17885804 original size:16 final size:17
Alignment explanation
Indices: 17885783--17885816 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
17885773 CTTTGAGAAG
17885783 CTCAAG-TCTGTTCTGA
1 CTCAAGCTCTGTTCTGA
17885799 CTCAAGCTTCTGTTCTGA
1 CTCAAGC-TCTGTTCTGA
17885817 TTCAGCCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
18 10 0.62
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.38
Consensus pattern (17 bp):
CTCAAGCTCTGTTCTGA
Found at i:17889370 original size:13 final size:13
Alignment explanation
Indices: 17889327--17889370 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
17889317 AGGGTAGTAT
17889327 TCTGTTTATCTGA
1 TCTGTTTATCTGA
*
17889340 TCTGTATATCTGA
1 TCTGTTTATCTGA
17889353 TTCTGTTTA-CTGTA
1 -TCTGTTTATCTG-A
17889367 TCTG
1 TCTG
17889371 AAAAGGGCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 19 0.70
14 8 0.30
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (13 bp):
TCTGTTTATCTGA
Found at i:17891346 original size:14 final size:15
Alignment explanation
Indices: 17891316--17891349 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
17891306 TGACCTTTTT
17891316 AATTTTGTTTAATTG
1 AATTTTGTTTAATTG
*
17891331 AATTTT-TTTCATTG
1 AATTTTGTTTAATTG
17891345 AATTT
1 AATTT
17891350 GACTATTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.26, C:0.03, G:0.09, T:0.62
Consensus pattern (15 bp):
AATTTTGTTTAATTG
Found at i:17897013 original size:33 final size:33
Alignment explanation
Indices: 17896944--17897016 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 33
17896934 ATTTCTCTTA
*
17896944 TCATTATTTGTTTAGTTTTATTTTTTAATCAATT
1 TCATTATTTGTTTAGTATTATTTTTTAA-CAATT
*
17896978 TCATTATTTTTTTA-TATTATTATTTTAA-AATTT
1 TCATTATTTGTTTAGTATTATT-TTTTAACAA-TT
17897011 TCATTA
1 TCATTA
17897017 ATAGAAAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
32 2 0.06
33 14 0.40
34 19 0.54
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.64
Consensus pattern (33 bp):
TCATTATTTGTTTAGTATTATTTTTTAACAATT
Found at i:17910691 original size:22 final size:21
Alignment explanation
Indices: 17910634--17910692 Score: 59
Period size: 22 Copynumber: 2.9 Consensus size: 21
17910624 ATTATTTTAT
* *
17910634 TGTATATT-ATAG-TATAGTA
1 TGTATATTCATTGATATAATA
17910653 TGTATATTCATTGATATAATA
1 TGTATATTCATTGATATAATA
* *
17910674 TGTTATATTGATTTATATA
1 TG-TATATTCATTGATATA
17910693 TTCATTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 8 0.24
20 3 0.09
21 8 0.24
22 14 0.42
ACGTcount: A:0.36, C:0.02, G:0.12, T:0.51
Consensus pattern (21 bp):
TGTATATTCATTGATATAATA
Found at i:17916145 original size:12 final size:12
Alignment explanation
Indices: 17916125--17916246 Score: 71
Period size: 12 Copynumber: 10.5 Consensus size: 12
17916115 TCTTAAAATT
17916125 ATAAATAATATA
1 ATAAATAATATA
*
17916137 ATGAATAATATAAA
1 ATAAATAATAT--A
17916151 CATAAATAATATA
1 -ATAAATAATATA
17916164 ATAAATAATAT-
1 ATAAATAATATA
* *
17916175 AT-GATATACATA
1 ATAAATA-ATATA
*
17916187 ATATATAATA-A
1 ATAAATAATATA
*
17916198 A-AAATTATATA
1 ATAAATAATATA
* * *
17916209 GTAAGTAATATT
1 ATAAATAATATA
17916221 AT-AATAA-A-A
1 ATAAATAATATA
*
17916230 GTAAA-AATATA
1 ATAAATAATATA
17916241 ATAAAT
1 ATAAAT
17916247 TCTATATAAT
Statistics
Matches: 81, Mismatches: 17, Indels: 24
0.66 0.14 0.20
Matches are distributed among these distances:
9 3 0.04
10 13 0.16
11 17 0.21
12 33 0.41
13 4 0.05
14 1 0.01
15 10 0.12
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (12 bp):
ATAAATAATATA
Found at i:17916194 original size:27 final size:27
Alignment explanation
Indices: 17916124--17916191 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
17916114 TTCTTAAAAT
*
17916124 TATAAATAATATAATGAATAATATAAA
1 TATAAATAATATAATAAATAATATAAA
* *
17916151 CATAAATAATATAATAAATAATATATGA
1 TATAAATAATATAATAAATAATATA-AA
*
17916179 TATACATAATATA
1 TATAAATAATATA
17916192 TAATAAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
27 23 0.66
28 12 0.34
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (27 bp):
TATAAATAATATAATAAATAATATAAA
Found at i:17916229 original size:30 final size:30
Alignment explanation
Indices: 17916150--17916229 Score: 85
Period size: 30 Copynumber: 2.6 Consensus size: 30
17916140 AATAATATAA
*
17916150 ACATAAATAATATAATAAATAATATATGATAT
1 ACAT-AAT-ATATAATAAAAAATATATGATAT
17916182 ACATAATATATAATAAAAAAT-TAT-ATAGT
1 ACATAATATATAATAAAAAATATATGATA-T
17916211 A-AGTAATATTATAATAAAA
1 ACA-TAATA-TATAATAAAA
17916230 GTAAAAATAT
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
28 4 0.09
29 10 0.23
30 23 0.52
31 3 0.07
32 4 0.09
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.34
Consensus pattern (30 bp):
ACATAATATATAATAAAAAATATATGATAT
Found at i:17918355 original size:119 final size:119
Alignment explanation
Indices: 17918070--17918544 Score: 691
Period size: 119 Copynumber: 4.0 Consensus size: 119
17918060 TGAGTCTGTT
* * * **
17918070 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTTCTTGTAAACATAAGAATGTCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* * * * * *
17918135 AATCATCTTGGATCTTGCTTCGGTATAAACCTCTGAAGGCTAGATCTACCATGTC
66 AATCATCTTGGATC-TGCTTCAGTATAAACATCTGAAAGCTAGATCTGCTATATC
* * * * *
17918190 TAAGAAAATCTGAAAGTCAAATCTGCTATGTCCTTGATTTGTTCCTTGTGAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* *
17918255 AATCATCTTGGATCTGCTTCAGTATAAACATCTAAAAGCTAGATCTGCTATATT
66 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCTAGATCTGCTATATC
*
17918309 TGAGAACATCTGAGAGTTAAATCTGCTATGTCCTCGATTT-TCTCCTTGTAAACACAAGAATACC
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGT-TCCTTGTAAACACAAGAATACC
* *
17918373 AAATCAACTTGGATCTGCTTCAGTATAAACATCTGAAAGTTAGATCTGCTATATC
65 AAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCTAGATCTGCTATATC
* * *
17918428 TGGGAACGTCTGAGAGTCAAATCTGCTATGTCCCCGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* *
17918493 AATCATCTTAGATCTGCTTCAATATAAACATCTGAAAGCTAGATCTGCTATA
66 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCTAGATCTGCTATA
17918545 CTGCGGCCTA
Statistics
Matches: 319, Mismatches: 34, Indels: 5
0.89 0.09 0.01
Matches are distributed among these distances:
118 1 0.00
119 246 0.77
120 72 0.23
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (119 bp):
TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCTAGATCTGCTATATC
Found at i:17930556 original size:9 final size:9
Alignment explanation
Indices: 17930537--17930640 Score: 56
Period size: 9 Copynumber: 11.2 Consensus size: 9
17930527 ATCTTAAAAT
*
17930537 TATAAATAA
1 TATATATAA
17930546 TATA-ATGAA
1 TATATAT-AA
17930555 TA-ATATAAA
1 TATATAT-AA
*
17930564 TATAAATAA
1 TATATATAA
17930573 TATA-ATAAA
1 TATATAT-AA
*
17930582 TAATATATGA
1 T-ATATATAA
*
17930592 TATACATAA
1 TATATATAA
17930601 TATATAATAA
1 TATAT-ATAA
*
17930611 -A-AAATAA
1 TATATATAA
17930618 TATAATAAGTAA
1 TAT-AT-A-TAA
17930630 TATATATAA
1 TATATATAA
17930639 TA
1 TA
17930641 AAAGTAAAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 24
0.70 0.07 0.22
Matches are distributed among these distances:
7 4 0.05
8 7 0.09
9 39 0.52
10 14 0.19
11 5 0.07
12 6 0.08
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.35
Consensus pattern (9 bp):
TATATATAA
Found at i:17930558 original size:12 final size:12
Alignment explanation
Indices: 17930538--17930660 Score: 91
Period size: 12 Copynumber: 10.5 Consensus size: 12
17930528 TCTTAAAATT
17930538 ATAAATAATATA
1 ATAAATAATATA
*
17930550 ATGAATAATATAAA
1 ATAAATAATAT--A
17930564 TATAAATAATATA
1 -ATAAATAATATA
17930577 ATAAATAATAT-
1 ATAAATAATATA
* *
17930588 AT-GATATACATA
1 ATAAATA-ATATA
*
17930600 ATATATAATA-A
1 ATAAATAATATA
17930611 A-AAATAATATA
1 ATAAATAATATA
*
17930622 ATAAGTAATAT-
1 ATAAATAATATA
17930633 ATATAATAA-A-A
1 ATA-AATAATATA
*
17930644 GTAAA-AATATA
1 ATAAATAATATA
17930655 ATAAAT
1 ATAAAT
17930661 GCTATATAAT
Statistics
Matches: 87, Mismatches: 11, Indels: 26
0.70 0.09 0.21
Matches are distributed among these distances:
9 2 0.02
10 13 0.15
11 20 0.23
12 37 0.43
13 4 0.05
14 1 0.01
15 10 0.11
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (12 bp):
ATAAATAATATA
Found at i:17930574 original size:27 final size:28
Alignment explanation
Indices: 17930537--17930642 Score: 108
Period size: 27 Copynumber: 3.6 Consensus size: 28
17930527 ATCTTAAAAT
*
17930537 TATAAATAATATAATGAATAATATA-AA
1 TATAAATAATATAATAAATAATATATAA
*
17930564 TATAAATAATATAATAAATAATATATGA
1 TATAAATAATATAATAAATAATATATAA
* *
17930592 TATACATAATATATAATAAAAAATAATATAA
1 TATAAAT-A-ATATAATAAATAAT-ATATAA
17930623 TA-AGTAATATATATAATAAA
1 TATA--AATA-ATATAATAAA
17930643 AGTAAAAATA
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
27 24 0.36
28 7 0.10
29 1 0.01
30 14 0.21
31 19 0.28
32 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (28 bp):
TATAAATAATATAATAAATAATATATAA
Found at i:17930586 original size:7 final size:7
Alignment explanation
Indices: 17930533--17930642 Score: 68
Period size: 7 Copynumber: 15.4 Consensus size: 7
17930523 ACAAATCTTA
*
17930533 AAATTAT
1 AAATAAT
17930540 AAATAAT
1 AAATAAT
17930547 ATAATGAAT
1 A-AAT-AAT
17930556 -AAT-AT
1 AAATAAT
17930561 AAAT-AT
1 AAATAAT
17930567 AAATAAT
1 AAATAAT
17930574 --ATAAT
1 AAATAAT
17930579 AAATAAT
1 AAATAAT
*
17930586 ATATGATAT
1 AAAT-A-AT
*
17930595 ACATAAT
1 AAATAAT
*
17930602 ATATAAT
1 AAATAAT
*
17930609 AAAAAAT
1 AAATAAT
17930616 AATATAAT
1 AA-ATAAT
*
17930624 AAGTAAT
1 AAATAAT
17930631 ATATATAAT
1 A-A-ATAAT
17930640 AAA
1 AAA
17930643 AGTAAAAATA
Statistics
Matches: 83, Mismatches: 9, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
5 7 0.08
6 9 0.11
7 41 0.49
8 13 0.16
9 13 0.16
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.34
Consensus pattern (7 bp):
AAATAAT
Found at i:17930668 original size:33 final size:31
Alignment explanation
Indices: 17930600--17930660 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
17930590 GATATACATA
* *
17930600 ATATATAATAAAAAATAATATAATAAGTAAT
1 ATATATAATAAAAAAAAATATAATAAATAAT
17930631 ATATATAATAAAAGTAAAAATATAATAAAT
1 ATATATAATAAAA--AAAAATATAATAAAT
17930661 GCTATATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 13 0.50
33 13 0.50
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (31 bp):
ATATATAATAAAAAAAAATATAATAAATAAT
Found at i:17930787 original size:19 final size:17
Alignment explanation
Indices: 17930763--17930806 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
17930753 ATAGATTTTG
17930763 AAATAAATAAATTATAAAA
1 AAATAAA-AAATT-TAAAA
17930782 AAATAACAAAATTTAAAA
1 AAATAA-AAAATTTAAAA
*
17930800 TAATAAA
1 AAATAAA
17930807 GAAAAGGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 1 0.04
18 10 0.43
19 11 0.48
20 1 0.04
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (17 bp):
AAATAAAAAATTTAAAA
Found at i:17933160 original size:127 final size:125
Alignment explanation
Indices: 17932887--17933449 Score: 628
Period size: 127 Copynumber: 4.4 Consensus size: 125
17932877 ACGGTAAACC
** ** * * * * * * **
17932887 GAAACCCAGCACGATTGGGCACGATTTATCGAATTTCCAAATACGAAACATTGCCACATTTTAAA
1 GAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCGTTTTATT
* * * * ** *
17932952 TTGAGAAAACATGGATGGAATTTCAAAAGGATATTCTGTATTTTAGTCGAATGAAAAATC
66 TTAAGAAAGCGTGGATGAAATTTCAAAAGGATATTCCATATTTTAGTCGAATGAAAAATT
* *
17933012 GAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAGCACGAAATATTACCTCGTTTTATT
1 GAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCGTTTTATT
* *
17933077 TTAAGAAAGCGTGGATGAAATTTCAAAAAAGGATATTCCATATTTTAGTCGAGTGGAAAATT
66 TTAAGAAAGCGTGGATGAAATTTC--AAAAGGATATTCCATATTTTAGTCGAATGAAAAATT
* * *
17933139 GAAGCCTAGCACGATTGGGCACGACTTCCCAAACTTCCAAACACGAAATATTGCCTCGTTTTATT
1 GAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCGTTTTATT
* * * *
17933204 TTAAGTAAA-CGCGGATGAATTTTAAAAAAAGGATATTCCATA-TTTAGTCGAATGAACAAAAT
66 TTAAG-AAAGCGTGGATGAAATTT--CAAAAGGATATTCCATATTTTAGTCGAATGAA-AAATT
* * * * *
17933266 GAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCCTTTTAG
1 GAAACCCAGCACGATTGGGCACGACCTCCCAAACT-TCCAAACACGAAATATTGCCTCGTTTTA-
* * * * * *
17933331 TTTTTTAA-AAAGCATGGACGAAATTTCCAAAGGATATTCCGTATTTTAGCCGAATGGAAAATT
64 --TTTTAAGAAAGCGTGGATGAAATTTCAAAAGGATATTCCATATTTTAGTCGAATGAAAAATT
* *
17933394 GAAGCCCAGCACGATTGGGCACGACCTCCCAAACTTCCCAACACGAAATATTGCCT
1 GAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCT
17933450 TATGTTGAGA
Statistics
Matches: 368, Mismatches: 58, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
125 71 0.19
126 12 0.03
127 176 0.48
128 78 0.21
129 15 0.04
130 10 0.03
131 6 0.02
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (125 bp):
GAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCGTTTTATT
TTAAGAAAGCGTGGATGAAATTTCAAAAGGATATTCCATATTTTAGTCGAATGAAAAATT
Found at i:17933391 original size:255 final size:253
Alignment explanation
Indices: 17932976--17933449 Score: 695
Period size: 255 Copynumber: 1.9 Consensus size: 253
17932966 ATGGAATTTC
**
17932976 AAAAGGATATTCTGTATTTTAGTCGAATGAAAAATCGAAACCCAGCACGATTGGGCACGACCTCC
1 AAAAGGATATTCCATATTTTAGTCGAATGAAAAATCGAAACCCAGCACGATTGGGCACGACCTCC
* * * * *
17933041 CAAACTTCCAAGCACGAAATATTACCTCGTTTTATTTTAAGAAAGCGTGGATGAAATTTCAAAAA
66 CAAACTCCCAAACACGAAATATTACCTCCTTTTATTTTAAGAAAGCATGGACGAAATTTC-AAAA
* * * *
17933106 AGGATATTCCATATTTTAGTCGAGTGGAAAATTGAAGCCTAGCACGATTGGGCACGACTTCCCAA
130 AGGATATTCCATATTTTAGCCGAATGGAAAATTGAAGCCCAGCACGATTGGGCACGACCTCCCAA
17933171 ACTTCCAAACACGAAATATTGCCTCGTTTTATTTTAAGTAAACGCGGATGAATTTTAAA
195 ACTTCCAAACACGAAATATTGCCTCGTTTTATTTTAAGTAAACGCGGATGAATTTTAAA
*
17933230 AAAAGGATATTCCATA-TTTAGTCGAATGAACAAAAT-GAAACCCAGCACGATTGGGCACGATCT
1 AAAAGGATATTCCATATTTTAGTCGAATG-A-AAAATCGAAACCCAGCACGATTGGGCACGACCT
* * *
17933293 CTCAAACTCCCCAAATACGAAATATTGCCTCCTTTTAGTTTTTTAA-AAAGCATGGACGAAATTT
64 CCCAAACT-CCCAAACACGAAATATTACCTCCTTTTA---TTTTAAGAAAGCATGGACGAAATTT
* *
17933357 C-CAAAGGATATTCCGTATTTTAGCCGAATGGAAAATTGAAGCCCAGCACGATTGGGCACGACCT
125 CAAAAAGGATATTCCATATTTTAGCCGAATGGAAAATTGAAGCCCAGCACGATTGGGCACGACCT
*
17933421 CCCAAACTTCCCAACACGAAATATTGCCT
190 CCCAAACTTCCAAACACGAAATATTGCCT
17933450 TATGTTGAGA
Statistics
Matches: 196, Mismatches: 18, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
253 12 0.06
254 48 0.24
255 113 0.58
257 17 0.09
258 6 0.03
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (253 bp):
AAAAGGATATTCCATATTTTAGTCGAATGAAAAATCGAAACCCAGCACGATTGGGCACGACCTCC
CAAACTCCCAAACACGAAATATTACCTCCTTTTATTTTAAGAAAGCATGGACGAAATTTCAAAAA
GGATATTCCATATTTTAGCCGAATGGAAAATTGAAGCCCAGCACGATTGGGCACGACCTCCCAAA
CTTCCAAACACGAAATATTGCCTCGTTTTATTTTAAGTAAACGCGGATGAATTTTAAA
Found at i:17935537 original size:45 final size:45
Alignment explanation
Indices: 17935466--17935973 Score: 299
Period size: 45 Copynumber: 11.4 Consensus size: 45
17935456 AAGATCTGTA
* *
17935466 ATTTTCAGTCTGCTTC-CTGCAACTTCAGGAAGATAAAACTTGCC
1 ATTTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGCC
* * **
17935510 GTCTTCAGTCTGCTCCACTGCAACTTCA-GAGAGATAAGACTTGTT
1 ATTTTCAGTCTGCTCCACTGCAACTTCAGGA-AGATAAGACTTGCC
* * **
17935555 ATTTTC-GATCTTCTCCA-TAGTCGA-TAT-ATGG-AGATAAGA-TCTGTA
1 ATTTTCAG-TCTGCTCCACT-G-CAACT-TCA-GGAAGATAAGACT-TGCC
* *
17935600 ATTTTCAGTCTGCTTC-CTGCAACTTCAGGAAGATAAGACTTACC
1 ATTTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGCC
* * * *
17935644 GTCTTCAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTTGCC
1 ATTTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGCC
* * * **
17935689 ATTTTC-GATCTGATCCA-TAGCCGA-TACATGG-AGATAAGA-TCTGTA
1 ATTTTCAG-TCTGCTCCACT-G-CAACTTCA-GGAAGATAAGACT-TGCC
* * *
17935734 ACTTTT-AGTCTGCTTC-CTGCATCTTCAGGAAGATAAGACTTGCT
1 A-TTTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGCC
* * * * * *
17935778 GTCTTCAGTTTGCTCCACTACAACTTCAGGGAGATAAGACTTGTC
1 ATTTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGCC
* * **
17935823 ATTTTC-GATCTGCTCCA-TAGCCGA-TACATGG-AGATAAGA-TCTGTA
1 ATTTTCAG-TCTGCTCCACT-G-CAACTTCA-GGAAGATAAGACT-TGCC
* * *
17935868 ACTTTT-AGTCTACTTC-CTGCAACTTCAGGAAGATAAGACTTGCT
1 A-TTTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGCC
* * * *
17935912 ATGTACAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTC
1 ATTTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGCC
17935957 ATTTTC-GATCTGCTCCA
1 ATTTTCAG-TCTGCTCCA
17935974 TAGCCGATAC
Statistics
Matches: 353, Mismatches: 68, Indels: 85
0.70 0.13 0.17
Matches are distributed among these distances:
43 17 0.05
44 95 0.27
45 218 0.62
46 22 0.06
47 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (45 bp):
ATTTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGCC
Found at i:17935615 original size:134 final size:134
Alignment explanation
Indices: 17935434--17936161 Score: 1043
Period size: 134 Copynumber: 5.4 Consensus size: 134
17935424 TAAAATCTAA
* *
17935434 TCCATAGTCGATACATGGAAATAAGATCTGTAA-TTTTCAGTCTGCTTCCTGCAACTTCAGGAAG
1 TCCATAGCCGATACATGGAGATAAGATCTGTAACTTTT-AGTCTGCTTCCTGCAACTTCAGGAAG
* * * *
17935498 ATAAAACTTGCCGTCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTTATTTTCGA
65 ATAAGACTTGCTGTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCATTTTCGA
*
17935563 TCTTC
130 TCTGC
* *
17935568 TCCATAGTCGATATATGGAGATAAGATCTGTAA-TTTTCAGTCTGCTTCCTGCAACTTCAGGAAG
1 TCCATAGCCGATACATGGAGATAAGATCTGTAACTTTT-AGTCTGCTTCCTGCAACTTCAGGAAG
* * * *
17935632 ATAAGACTTACCGTCTTCAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTTGCCATTTTCGA
65 ATAAGACTTGCTGTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCATTTTCGA
*
17935697 TCTGA
130 TCTGC
*
17935702 TCCATAGCCGATACATGGAGATAAGATCTGTAACTTTTAGTCTGCTTCCTGCATCTTCAGGAAGA
1 TCCATAGCCGATACATGGAGATAAGATCTGTAACTTTTAGTCTGCTTCCTGCAACTTCAGGAAGA
* *
17935767 TAAGACTTGCTGTCTTCAGTTTGCTCCACTACAACTTCAGGGAGATAAGACTTGTCATTTTCGAT
66 TAAGACTTGCTGTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCATTTTCGAT
17935832 CTGC
131 CTGC
*
17935836 TCCATAGCCGATACATGGAGATAAGATCTGTAACTTTTAGTCTACTTCCTGCAACTTCAGGAAGA
1 TCCATAGCCGATACATGGAGATAAGATCTGTAACTTTTAGTCTGCTTCCTGCAACTTCAGGAAGA
* * *
17935901 TAAGACTTGCTATGTACAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCATTTTCGAT
66 TAAGACTTGCTGTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCATTTTCGAT
17935966 CTGC
131 CTGC
*
17935970 TCCATAGCCGATACATGGAGATAAGATCTGTAACTTTTAGTCTGCTTCCTACAACTTCAGGAAGA
1 TCCATAGCCGATACATGGAGATAAGATCTGTAACTTTTAGTCTGCTTCCTGCAACTTCAGGAAGA
* * ** * * *** * * * * *
17936035 TAAGACTAG-TGGCTAAAATCTGCTCTA-TAGCCGGTACATGGAGATAAGACTCGCCATTTTTGA
66 TAAGACTTGCTGTCTTCAGTCTGCTCCACT-GCAACTTCAGGGAGATAAGACTTGTCATTTTCGA
17936098 TCTGC
130 TCTGC
* *
17936103 TCCATAGCCGATACATAGAGATAAGATCTGTAA-TTTTCAGTCTGCTTCCTACAACTTCA
1 TCCATAGCCGATACATGGAGATAAGATCTGTAACTTTT-AGTCTGCTTCCTGCAACTTCA
17936162 AGACAATAAG
Statistics
Matches: 546, Mismatches: 45, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
132 5 0.01
133 96 0.18
134 441 0.81
135 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (134 bp):
TCCATAGCCGATACATGGAGATAAGATCTGTAACTTTTAGTCTGCTTCCTGCAACTTCAGGAAGA
TAAGACTTGCTGTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCATTTTCGAT
CTGC
Found at i:17935677 original size:89 final size:88
Alignment explanation
Indices: 17935468--17935970 Score: 254
Period size: 89 Copynumber: 5.6 Consensus size: 88
17935458 GATCTGTAAT
* * *** * *
17935468 TTTCAGTCTGCTTCC--TGCAACTTCAGGAAGATAAAACTTGCCGTCTTCAGTCTGCTCCACTGC
1 TTTCAGTCTGC-TCCATTGCAACTTCAGGGAGATAAGACTTGTAATTTTCAGTCTGCTTC-CTGC
***
17935531 AACTTCA-GAGAGATAAGACTTGTTA
64 AACTTCAGGA-AGATAAGACTTACCA
* * * *
17935556 TTTTC-GATCTTCTCCATAGTCGA-TAT-ATGGAGATAAGA-TCTGTAATTTTCAGTCTGCTTCC
1 -TTTCAG-TCTGCTCCATTG-CAACT-TCAGGGAGATAAGACT-TGTAATTTTCAGTCTGCTTCC
*
17935617 TGCAACTTCAGGAAGATAAGACTTACCG
61 TGCAACTTCAGGAAGATAAGACTTACCA
** *
17935645 TCTTCAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTTGCCATTTTC-GATCTG-ATCCATA
1 T-TTCAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTTGTAATTTTCAG-TCTGCTTCC-T-
* * *
17935708 GCCGA-TACATGG-AGATAAGATCTGTAAC-
62 G-CAACTTCA-GGAAGATAAGA-CT-TACCA
* * * * * * * *
17935736 TTTTAGTCTGCTTCC--TGCATCTTCAGGAAGATAAGACTTGCT-GTCTTCAGTTTGCTCCACTA
1 TTTCAGTCTGC-TCCATTGCAACTTCAGGGAGATAAGACTTG-TAATTTTCAGTCTGCTTC-CTG
* **
17935798 CAACTTCAGGGAGATAAGACTTGTCA
63 CAACTTCAGGAAGATAAGACTTACCA
* * * * *
17935824 TTTTC-GATCTGCTCCATAGCCGA-TACATGGAGATAAGA-TCTGTAACTTTT-AGTCTACTTCC
1 -TTTCAG-TCTGCTCCATTG-CAACTTCAGGGAGATAAGACT-TGTAA-TTTTCAGTCTGCTTCC
* *
17935885 TGCAACTTCAGGAAGATAAGACTTGCTA
61 TGCAACTTCAGGAAGATAAGACTTACCA
* * *
17935913 TGTACAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCATTTTC-GATCTGCT
1 T-TTCAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTTGTAATTTTCAG-TCTGCT
17935971 CCATAGCCGA
Statistics
Matches: 310, Mismatches: 63, Indels: 82
0.68 0.14 0.18
Matches are distributed among these distances:
87 2 0.01
88 30 0.10
89 179 0.58
90 78 0.25
91 18 0.06
92 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (88 bp):
TTTCAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTTGTAATTTTCAGTCTGCTTCCTGCAA
CTTCAGGAAGATAAGACTTACCA
Found at i:17936014 original size:45 final size:43
Alignment explanation
Indices: 17935540--17936148 Score: 166
Period size: 45 Copynumber: 13.6 Consensus size: 43
17935530 CAACTTCAGA
* * * * *
17935540 GAGATAAGACTTGTTATTTTCGATCTTCTCCATAGTCGATATATG
1 GAGATAAGAC-TGTAATTTTAG-TCTGCTCCATAGCCGATACATG
* *
17935585 GAGATAAGATCTGTAATTTTCAGTCTGCTTCC-T-G-CAACTTCA-G
1 GAGATAAGA-CTGTAATTTT-AGTCTGC-TCCATAGCCGA-TACATG
* * * * * *
17935628 GAAGATAAGACT-TACCGTCTTCAGTCTGCTCCATTG-CAACTTCAGG
1 G-AGATAAGACTGTA--AT-TTTAGTCTGCTCCATAGCCGA-TACATG
** * *
17935674 GAGATAAGACTTGCCATTTTCGATCTGATCCATAGCCGATACATG
1 GAGATAAGAC-TGTAATTTTAG-TCTGCTCCATAGCCGATACATG
*** *
17935719 GAGATAAGATCTGTAACTTTTAGTCTGCTTCC-T-GCATCTTCA-G
1 GAGATAAGA-CTGTAA-TTTTAGTCTGC-TCCATAGCCGATACATG
* * * * * *
17935762 GAAGATAAGACTTGCT-GTCTTCAGTTTGCTCCACTA--CAACTTCAGG
1 G-AGATAAGAC-TG-TAAT-TTTAGTCTGCTCCA-TAGCCGA-TACATG
* *
17935808 GAGATAAGACTTGTCATTTTCGATCTGCTCCATAGCCGATACATG
1 GAGATAAGAC-TGTAATTTTAG-TCTGCTCCATAGCCGATACATG
* * *
17935853 GAGATAAGATCTGTAACTTTTAGTCTACTTCC-T-G-CAACTTCA-G
1 GAGATAAGA-CTGTAA-TTTTAGTCTGC-TCCATAGCCGA-TACATG
** * * *
17935896 GAAGATAAGACTTGCT-ATGTACAGTCTGCTCCACT-G-CAACTTCAGG
1 G-AGATAAGAC-TG-TAAT-TTTAGTCTGCTCCA-TAGCCGA-TACATG
* *
17935942 GAGATAAGACTTGTCATTTTCGATCTGCTCCATAGCCGATACATG
1 GAGATAAGAC-TGTAATTTTAG-TCTGCTCCATAGCCGATACATG
* *
17935987 GAGATAAGATCTGTAACTTTTAGTCTGCTTCC-TA--CAACTTCA-G
1 GAGATAAGA-CTGTAA-TTTTAGTCTGC-TCCATAGCCGA-TACATG
*** ** * * *
17936030 GAAGATAAGACTAGTGGCTAAAATCTGCTCTATAGCCGGTACATG
1 G-AGATAAGACT-GTAATTTTAGTCTGCTCCATAGCCGATACATG
** * *
17936075 GAGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATACATA
1 GAGATAAGACT-GTAATTTTAG-TCTGCTCCATAGCCGATACATG
17936120 GAGATAAGATCTGTAATTTTCAGTCTGCT
1 GAGATAAGA-CTGTAATTTT-AGTCTGCT
17936149 TCCTACAACT
Statistics
Matches: 423, Mismatches: 82, Indels: 118
0.68 0.13 0.19
Matches are distributed among these distances:
42 4 0.01
43 40 0.09
44 106 0.25
45 225 0.53
46 48 0.11
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (43 bp):
GAGATAAGACTGTAATTTTAGTCTGCTCCATAGCCGATACATG
Found at i:17936026 original size:89 final size:88
Alignment explanation
Indices: 17935445--17936041 Score: 244
Period size: 89 Copynumber: 6.7 Consensus size: 88
17935435 CCATAGTCGA
* * * * *
17935445 TACATGGAAATAAGA-TCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAAACTTGC
1 TACATGGAGATAAGACT-TGTAATTTT-AGTCTGCTTCCTACAACTTCAGGGAGATAAGACTTGT
* *
17935509 CGTCTTC-AGTCTGCTCCACT-GCAAC
64 CATTTTCGA-TCTGCTCCA-TAGCAAC
* * * * * *
17935534 TTCA-GAGAGATAAGACTTGTTATTTTCGATCTTC-TCCATAGTCGA-TAT-ATGGAGATAAGA-
1 TACATG-GAGATAAGACTTGTAATTTTAG-TCTGCTTCC-TA--CAACT-TCAGGGAGATAAGAC
*
17935594 TCTGTAATTTTC-AGTCTGCTTCC-T-GCAAC
60 T-TGTCATTTTCGA-TCTGC-TCCATAGCAAC
* **** * *
17935623 TTCA-GGAAGATAAGACTTACCGTCTTCAGTCTGC-TCCATTGCAACTTCAGGGAGATAAGACTT
1 TACATGG-AGATAAGACTTGTAAT-TTTAGTCTGCTTCC--TACAACTTCAGGGAGATAAGACTT
* * *
17935686 GCCATTTTCGATCTGATCCATAGCCGA-
62 GTCATTTTCGATCTGCTCCATAG-CAAC
* * *
17935713 TACATGGAGATAAGA-TCTGTAACTTTTAGTCTGCTTCCTGCATCTTCAGGAAGATAAGACTTG-
1 TACATGGAGATAAGACT-TGTAA-TTTTAGTCTGCTTCCTACAACTTCAGGGAGATAAGACTTGT
*
17935776 C-TGTCTTC-AGTTTGCTCCACTA-CAAC
64 CAT-T-TTCGA-TCTGCTCCA-TAGCAAC
* * * * * * *
17935802 TTCAGGGAGATAAGACTTGTCATTTTCGATCTGC-TCCATAGCCGA-TACATGGAGATAAGA-TC
1 TACATGGAGATAAGACTTGTAATTTTAG-TCTGCTTCC-TA--CAACTTCAGGGAGATAAGACT-
* * *
17935864 TGTAACTTTTAG-TCTACTTCC-T-GCAAC
61 TGTCA-TTTTCGATCTGC-TCCATAGCAAC
* ** * *
17935891 TTCA-GGAAGATAAGACTTGCT-ATGTACAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT
1 TACATGG-AGATAAGACTTG-TAAT-TTTAGTCTGCTTC-CTACAACTTCAGGGAGATAAGACTT
*
17935954 GTCATTTTCGATCTGCTCCATAGCCGA-
62 GTCATTTTCGATCTGCTCCATAG-CAAC
*
17935981 TACATGGAGATAAGA-TCTGTAACTTTTAGTCTGCTTCCTACAACTTCAGGAAGATAAGACT
1 TACATGGAGATAAGACT-TGTAA-TTTTAGTCTGCTTCCTACAACTTCAGGGAGATAAGACT
17936042 AGTGGCTAAA
Statistics
Matches: 381, Mismatches: 72, Indels: 110
0.68 0.13 0.20
Matches are distributed among these distances:
87 1 0.00
88 37 0.10
89 212 0.56
90 103 0.27
91 26 0.07
92 1 0.00
93 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (88 bp):
TACATGGAGATAAGACTTGTAATTTTAGTCTGCTTCCTACAACTTCAGGGAGATAAGACTTGTCA
TTTTCGATCTGCTCCATAGCAAC
Found at i:17947747 original size:127 final size:124
Alignment explanation
Indices: 17947478--17948041 Score: 553
Period size: 127 Copynumber: 4.5 Consensus size: 124
17947468 AACGATAAAC
* ** * * * * * *
17947478 CGAAACCCAGCACGATTGGGCACGA-TTGATCGAATTTCCAAATACGAAACATTGCCACATTTTA
1 CGAAACCCAGCACGATTGGGCACGACCT-CCCAAACTTCCAAACACGAAATATTGCCTCGTTTTA
** * * * * **
17947542 AATTGAGAAAACATGGATGGAATTTCAAAAGGATATTCTGTATTTTAGTCGAATGAAAAAT
65 TTTTAAGAAAGCGTGGAT-AAATTTCAAAAGGATATTCCATATTTTAGTCGAATGAAAAAT
* * *
17947603 CGAAACCCAGCACGATTGGGTACGACCTCCCAAACTTCCAAGCACGAAATATTACCTCGTTTTAT
1 CGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCGTTTTAT
* *
17947668 TTTAAGAAAGCGTGGATAAAATTTCAAAAATGGATATTCCATATTTTAGTCGAGTGGAAAAT
66 TTTAAGAAAGCGTGGAT-AAATTTC-AAAA-GGATATTCCATATTTTAGTCGAATGAAAAAT
* * * *
17947730 TGAAGCCCAGCACGATTGGGCATGACTTCCCAAACTTCCAAACACGAAATATTGCCTCGTTTTAT
1 CGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCGTTTTAT
* * * *
17947795 TTTAAGTAAA-CGCGGATGAATTTAAAAAAAAAGGATATTCCATA-TTTAGTCGAATGAACAAAA
66 TTTAAG-AAAGCGTGGATAAATTT----CAAAAGGATATTCCATATTTTAGTCGAATGAA-AAAT
* * * * *
17947858 CGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCCTTTTA
1 CGAAACCCAGCACGATTGGGCACGACCTCCCAAACT-TCCAAACACGAAATATTGCCTCGTTTT-
* * * * *
17947923 ATTTTTTAA-AAAGCATGGACGAAATTTC-AAAGGATATTCCGTATTTTAGCCGAATGGAAAAT
64 A--TTTTAAGAAAGCGTGGA-TAAATTTCAAAAGGATATTCCATATTTTAGTCGAATGAAAAAT
* * * *
17947985 TGAAGCCCAGCACGATTGGGCACGACCTCCAAAACTTCCCAACACGAAATATTGCCT
1 CGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCT
17948042 TCTGCTGAGA
Statistics
Matches: 361, Mismatches: 62, Indels: 31
0.80 0.14 0.07
Matches are distributed among these distances:
125 69 0.19
126 28 0.08
127 157 0.43
128 60 0.17
129 28 0.08
130 4 0.01
131 4 0.01
132 11 0.03
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (124 bp):
CGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCGTTTTAT
TTTAAGAAAGCGTGGATAAATTTCAAAAGGATATTCCATATTTTAGTCGAATGAAAAAT
Found at i:17947869 original size:255 final size:254
Alignment explanation
Indices: 17947568--17948041 Score: 677
Period size: 255 Copynumber: 1.9 Consensus size: 254
17947558 ATGGAATTTC
** * *
17947568 AAAAGGATATTCTGTATTTTAGTCGAATGAAAAATCGAAACCCAGCACGATTGGGTACGACCTCC
1 AAAAGGATATTCCATATTTTAGTCGAATGAAAAAACGAAACCCAGCACGATTGGGCACGACCTCC
* * * * *
17947633 CAAACT-TCCAAGCACGAAATATTACCTCGTTTT-A-TTTTAAGAAAGCGTGGATAAAATTTCAA
66 CAAACTCCCCAAACACGAAATATTACCTCCTTTTAATTTTTAA-AAAGCATGGACAAAATTTC--
* * * *
17947695 AAATGGATATTCCATATTTTAGTCGAGTGGAAAATTGAAGCCCAGCACGATTGGGCATGACTTCC
128 AAA-GGATATTCCATATTTTAGCCGAATGGAAAATTGAAGCCCAGCACGATTGGGCACGACCTCC
*
17947760 CAAACTTCCAAACACGAAATATTGCCTCGTTTTATTTTAAGTAAACGCGGATGAATTTAAAAA
192 AAAACTTCCAAACACGAAATATTGCCTCGTTTTATTTTAAGTAAACGCGGATGAATTTAAAAA
*
17947823 AAAAGGATATTCCATA-TTTAGTCGAATGAACAAAACGAAACCCAGCACGATTGGGCACGATCTC
1 AAAAGGATATTCCATATTTTAGTCGAATGAA-AAAACGAAACCCAGCACGATTGGGCACGACCTC
* * * *
17947887 TCAAACTCCCCAAATACGAAATATTGCCTCCTTTTAATTTTTTAAAAAGCATGGACGAAATTTCA
65 CCAAACTCCCCAAACACGAAATATTACCTCCTTTTAA-TTTTTAAAAAGCATGGACAAAATTTCA
*
17947952 AAGGATATTCCGTATTTTAGCCGAATGGAAAATTGAAGCCCAGCACGATTGGGCACGACCTCCAA
129 AAGGATATTCCATATTTTAGCCGAATGGAAAATTGAAGCCCAGCACGATTGGGCACGACCTCCAA
*
17948017 AACTTCCCAACACGAAATATTGCCT
194 AACTTCCAAACACGAAATATTGCCT
17948042 TCTGCTGAGA
Statistics
Matches: 193, Mismatches: 21, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
254 14 0.07
255 131 0.68
256 25 0.13
257 1 0.01
258 16 0.08
259 6 0.03
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.27
Consensus pattern (254 bp):
AAAAGGATATTCCATATTTTAGTCGAATGAAAAAACGAAACCCAGCACGATTGGGCACGACCTCC
CAAACTCCCCAAACACGAAATATTACCTCCTTTTAATTTTTAAAAAGCATGGACAAAATTTCAAA
GGATATTCCATATTTTAGCCGAATGGAAAATTGAAGCCCAGCACGATTGGGCACGACCTCCAAAA
CTTCCAAACACGAAATATTGCCTCGTTTTATTTTAAGTAAACGCGGATGAATTTAAAAA
Found at i:17951555 original size:5 final size:5
Alignment explanation
Indices: 17951545--17951569 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
17951535 TGTACTAACG
17951545 TGTTT TGTTT TGTTT TGTTT TGTTT
1 TGTTT TGTTT TGTTT TGTTT TGTTT
17951570 ATGACTGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80
Consensus pattern (5 bp):
TGTTT
Found at i:17952692 original size:38 final size:38
Alignment explanation
Indices: 17952642--17952717 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
17952632 GGTTGGAGGA
17952642 AAAAGTTAAGGCAATGAAGAATGTTGACTACTATTATG
1 AAAAGTTAAGGCAATGAAGAATGTTGACTACTATTATG
*
17952680 AAAAGTTAAGGCAATGGAGAATGTTGACTACTATTATG
1 AAAAGTTAAGGCAATGAAGAATGTTGACTACTATTATG
17952718 GGGTTGACGC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (38 bp):
AAAAGTTAAGGCAATGAAGAATGTTGACTACTATTATG
Found at i:17954070 original size:12 final size:12
Alignment explanation
Indices: 17954047--17954076 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
17954037 GATTTTATTG
17954047 TTCTTT-GAATT
1 TTCTTTCGAATT
17954058 TTCTTTCGAATT
1 TTCTTTCGAATT
17954070 TTCTTTC
1 TTCTTTC
17954077 ATTTTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.33
12 12 0.67
ACGTcount: A:0.13, C:0.17, G:0.07, T:0.63
Consensus pattern (12 bp):
TTCTTTCGAATT
Found at i:17954773 original size:11 final size:11
Alignment explanation
Indices: 17954753--17954786 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
17954743 GATAGTCATC
*
17954753 AAACCCAAAAA
1 AAACCAAAAAA
17954764 AAACCAAAAAA
1 AAACCAAAAAA
17954775 AAACTCAAAAAA
1 AAAC-CAAAAAA
17954787 CTCAAAAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.76, C:0.21, G:0.00, T:0.03
Consensus pattern (11 bp):
AAACCAAAAAA
Found at i:17956673 original size:220 final size:220
Alignment explanation
Indices: 17956282--17956727 Score: 669
Period size: 220 Copynumber: 2.0 Consensus size: 220
17956272 AGGTTTGACT
* * *
17956282 ATCCTATCACCCTAAGTAGTAGTGGAGTAGGTTGAAAATTGTAAATCTTGCCTCCCTGAAGTTGC
1 ATCCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAAATTGCAAATCTTGCCTCCCTGAAGTTGC
* * *
17956347 AGGGGAGCAGATCAAAGACGATGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAATTA
66 AGGGGAGCAGATAAAAAACGATGAGCCTTAACCCCCTAAGCAATAGGGTAACAGGCTAGAAATTA
* * * * *
17956412 CAGATCTTGTCTCCCTGAAGCTGCAGTGGAACAGATCGAAGATGGTGAATCTTGTC-TCTCTAAC
131 CAGATCTTATCTCCCTGAAGCTGCAGTGAAACAGATCGAAGACGGCGAATCTTATCTTCT-TAAC
*
17956476 CAGTAGCGGAGCAGATTTAAGCCACC
195 CAGTAGCAGAGCAGATTTAAGCCACC
* * *
17956502 ATCCTACCTCCCTAAGCAGTAGTGGAGTAGGTTGAAAATTGCAGATCTTGCCTCCCTGAAGTTGT
1 ATCCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAAATTGCAAATCTTGCCTCCCTGAAGTTGC
* *
17956567 AGTGGAGCAGATAAAAAACGATGAGCCTTAACCCCCTAAGCAATAGGGTAACAGGCTAGAAATTG
66 AGGGGAGCAGATAAAAAACGATGAGCCTTAACCCCCTAAGCAATAGGGTAACAGGCTAGAAATTA
* * *
17956632 TAGATCTTATCTCCCTGAAGTTGCAGTGAAATAGATCGAAGACGGCGAATCTTATCTTCTTAACC
131 CAGATCTTATCTCCCTGAAGCTGCAGTGAAACAGATCGAAGACGGCGAATCTTATCTTCTTAACC
* * *
17956697 AGTAGTAGAGCAGATTTAAGCTACT
196 AGTAGCAGAGCAGATTTAAGCCACC
17956722 ATCCTA
1 ATCCTA
17956728 TCTCTCTGAA
Statistics
Matches: 202, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
220 199 0.99
221 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (220 bp):
ATCCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAAATTGCAAATCTTGCCTCCCTGAAGTTGC
AGGGGAGCAGATAAAAAACGATGAGCCTTAACCCCCTAAGCAATAGGGTAACAGGCTAGAAATTA
CAGATCTTATCTCCCTGAAGCTGCAGTGAAACAGATCGAAGACGGCGAATCTTATCTTCTTAACC
AGTAGCAGAGCAGATTTAAGCCACC
Found at i:17956832 original size:45 final size:45
Alignment explanation
Indices: 17956773--17957204 Score: 384
Period size: 45 Copynumber: 9.6 Consensus size: 45
17956763 CCCAAGTCTC
17956773 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGCAGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGCAGATCTT
**
17956818 ATCTCCCTGAAGTTGCAGTGGAGCAGA-TCGAAGCCA-CA-ATCCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGTTAGCAGAT-CTT
** * * * * * *
17956862 ATCTTTCTAAAGTTGCAGTAGAGCAGGA-TAAAATCAGCCA-AGTCTC
1 ATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAGTTAG-CAGA-TCTT
* * * *
17956908 ATATCCCTGAAGTTGCAGTAGAGCAGACTAAAGTTAGCAGATCTC
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGCAGATCTT
* * *
17956953 ATCTCCTTGAAGTTGCAATGGAGCAAACTGAAGTTAGCAGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGCAGATCTT
* **
17956998 ATCTCCCTGAAGTTGCAGAGGAGCAGA-TCGAAGCCA-CA-ATCCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGTTAGCAGAT-CTT
* * ** * * *
17957042 ATCTCTCTGAACTTGCAGTAAAGTAGGA-T-AA-TATCACCCA-AGTCTC
1 ATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAGT-T-A-GCAGA-TCTT
* * *
17957088 ATCTCCCTAAAGTTGCACTGGAGCAGACTGAAGTTAGCAGATCTC
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGCAGATCTT
*
17957133 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGGAGTTAGCAGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGCAGATCTT
*
17957178 ACCTCCCTGAAGTTGCAGTGGAGCAGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGA
17957205 TCGAAGCCAC
Statistics
Matches: 316, Mismatches: 51, Indels: 40
0.78 0.13 0.10
Matches are distributed among these distances:
43 6 0.02
44 57 0.18
45 187 0.59
46 60 0.19
47 5 0.02
48 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (45 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGCAGATCTT
Found at i:17956895 original size:135 final size:134
Alignment explanation
Indices: 17956704--17956977 Score: 404
Period size: 135 Copynumber: 2.0 Consensus size: 134
17956694 ACCAGTAGTA
** * * * * *
17956704 GAGCAGATTTAAGCTACTATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGATAAAATTACCCAAG
1 GAGCAGATCGAAGCCACAATCCTATCTCTCTAAAGTTGCAGTAGAGCAGGATAAAATCACCCAAG
* * * *
17956769 TCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGC
66 TCTCATATCCCTGAAGTTGCAGTAGAGCAGACTAAAGTTAGCAGATCTCATCTCCCTGAAGTTGC
*
17956834 AGTG
131 AATG
* *
17956838 GAGCAGATCGAAGCCACAATCCTTATCTTTCTAAAGTTGCAGTAGAGCAGGATAAAATCAGCCAA
1 GAGCAGATCGAAGCCACAATCC-TATCTCTCTAAAGTTGCAGTAGAGCAGGATAAAATCACCCAA
*
17956903 GTCTCATATCCCTGAAGTTGCAGTAGAGCAGACTAAAGTTAGCAGATCTCATCTCCTTGAAGTTG
65 GTCTCATATCCCTGAAGTTGCAGTAGAGCAGACTAAAGTTAGCAGATCTCATCTCCCTGAAGTTG
17956968 CAATG
130 CAATG
17956973 GAGCA
1 GAGCA
17956978 AACTGAAGTT
Statistics
Matches: 124, Mismatches: 15, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
134 18 0.15
135 106 0.85
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (134 bp):
GAGCAGATCGAAGCCACAATCCTATCTCTCTAAAGTTGCAGTAGAGCAGGATAAAATCACCCAAG
TCTCATATCCCTGAAGTTGCAGTAGAGCAGACTAAAGTTAGCAGATCTCATCTCCCTGAAGTTGC
AATG
Found at i:17956926 original size:90 final size:89
Alignment explanation
Indices: 17956773--17957293 Score: 393
Period size: 90 Copynumber: 5.8 Consensus size: 89
17956763 CCCAAGTCTC
* * * * * *
17956773 ATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGT
1 ATCTCTCTGAAGTTGCAGTAGAGCAGGA-TAAAATCAGCAGATCTCATCTCCCTGAAGTTGCAGT
17956837 GGAGCAGATCGAAGCCACAATCCTT
65 GGAGCAGATCGAAGCCACAATCCTT
* * *
17956862 ATCTTTCTAAAGTTGCAGTAGAGCAGGATAAAATCAGCCA-AGTCTCATATCCCTGAAGTTGCAG
1 ATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATCAG-CAGA-TCTCATCTCCCTGAAGTTGCAG
* * ** *
17956926 TAGAGCAGA-CTAAAGTTAGCAGAT-CTC
64 TGGAGCAGATC-GAAGCCA-CA-ATCCTT
* * * * * * *
17956953 ATCTC-CTTGAAGTTGCAATGGAGCA-AACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAG
1 ATCTCTC-TGAAGTTGCAGTAGAGCAGGA-TAAAATCAGCAGATCTCATCTCCCTGAAGTTGCAG
*
17957016 AGGAGCAGATCGAAGCCACAATCCTT
64 TGGAGCAGATCGAAGCCACAATCCTT
* * * * * * *
17957042 ATCTCTCTGAACTTGCAGTAAAGTAGGATAATATCACCCA-AGTCTCATCTCCCTAAAGTTGCAC
1 ATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATCA-GCAGA-TCTCATCTCCCTGAAGTTGCAG
** *
17957106 TGGAGCAGA-CTGAAGTTAGCAGAT-CTC
64 TGGAGCAGATC-GAAGCCA-CA-ATCCTT
* * ** * * * *
17957133 ATCTCCCTGAAGTTGCAGTGGAGCA-GACTGGAGTTAGCAGATCTTACCTCCCTGAAGTTGCAGT
1 ATCTCTCTGAAGTTGCAGTAGAGCAGGA-TAAAATCAGCAGATCTCATCTCCCTGAAGTTGCAGT
17957197 GGAGCAGATCGAAGCCACAATCCTT
65 GGAGCAGATCGAAGCCACAATCCTT
* * *
17957222 ATCTCTCTGAAGTTACGGTAGAGCAGGATAAAAAT-A-CACGAAC-CGTATCTCCCTGAAGTTGC
1 ATCTCTCTGAAGTTGCAGTAGAGCAGGAT-AAAATCAGCA-GATCTC--ATCTCCCTGAAGTTGC
*
17957284 AATGGAGCAG
62 AGTGGAGCAG
17957294 TTACAGTAGA
Statistics
Matches: 328, Mismatches: 77, Indels: 53
0.72 0.17 0.12
Matches are distributed among these distances:
88 6 0.02
89 87 0.27
90 171 0.52
91 60 0.18
92 4 0.01
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (89 bp):
ATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATCAGCAGATCTCATCTCCCTGAAGTTGCAGTG
GAGCAGATCGAAGCCACAATCCTT
Found at i:17956997 original size:180 final size:180
Alignment explanation
Indices: 17956733--17957254 Score: 796
Period size: 180 Copynumber: 2.9 Consensus size: 180
17956723 TCCTATCTCT
* * *
17956733 CTGAAGTTGTAGTAGAGCAGGA-TAAAATTACCCA-AGTCTCATCTCCCTGAAGTTGCAGTGGAG
1 CTGAAGTTGCAGTAGAGCA-GACTAAAGTTA-GCAGA-TCTCATCTCCCTGAAGTTGCAGTGGAG
17956796 CAGACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCT
63 CAGACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCT
* * *
17956861 TATCTTTCTAAAGTTGCAGTAGAGCAGGATAAAATCAGCCAAGTCTCATATCC
128 TATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATCACCCAAGTCTCATATCC
* * *
17956914 CTGAAGTTGCAGTAGAGCAGACTAAAGTTAGCAGATCTCATCTCCTTGAAGTTGCAATGGAGCAA
1 CTGAAGTTGCAGTAGAGCAGACTAAAGTTAGCAGATCTCATCTCCCTGAAGTTGCAGTGGAGCAG
*
17956979 ACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATCGAAGCCACAATCCTTAT
66 ACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTAT
* * * * *
17957044 CTCTCTGAACTTGCAGTAAAGTAGGATAATATCACCCAAGTCTCATCTCC
131 CTCTCTGAAGTTGCAGTAGAGCAGGATAAAATCACCCAAGTCTCATATCC
* * * *
17957094 CTAAAGTTGCACTGGAGCAGACTGAAGTTAGCAGATCTCATCTCCCTGAAGTTGCAGTGGAGCAG
1 CTGAAGTTGCAGTAGAGCAGACTAAAGTTAGCAGATCTCATCTCCCTGAAGTTGCAGTGGAGCAG
* *
17957159 ACTGGAGTTAGCAGATCTTACCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTAT
66 ACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTAT
* *
17957224 CTCTCTGAAGTTACGGTAGAGCAGGATAAAA
131 CTCTCTGAAGTTGCAGTAGAGCAGGATAAAA
17957255 ATACACGAAC
Statistics
Matches: 308, Mismatches: 31, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
180 282 0.92
181 26 0.08
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (180 bp):
CTGAAGTTGCAGTAGAGCAGACTAAAGTTAGCAGATCTCATCTCCCTGAAGTTGCAGTGGAGCAG
ACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTAT
CTCTCTGAAGTTGCAGTAGAGCAGGATAAAATCACCCAAGTCTCATATCC
Found at i:17965879 original size:25 final size:22
Alignment explanation
Indices: 17965821--17965880 Score: 57
Period size: 25 Copynumber: 2.5 Consensus size: 22
17965811 CAACCACTTT
17965821 TTTTATATTAAAATATATTTTTA
1 TTTT-TATTAAAATATATTTTTA
* * *
17965844 CTTTAAATAAAATATTATTATTTTA
1 TTTTTATTAAAATA-TA-T-TTTTA
17965869 TTTTTATTAAAA
1 TTTTTATTAAAA
17965881 ACATTTAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
22 8 0.29
23 5 0.18
24 1 0.04
25 14 0.50
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTTTATTAAAATATATTTTTA
Found at i:17966406 original size:60 final size:60
Alignment explanation
Indices: 17966313--17966431 Score: 229
Period size: 60 Copynumber: 2.0 Consensus size: 60
17966303 TTATTTTTTA
*
17966313 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATGATGTTATAAATTGTTGTGTTTG
17966373 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATGATGTTATAAATTGTTGTGTTT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATGATGTTATAAATTGTTGTGTTT
17966432 AGTTTAGTAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATGATGTTATAAATTGTTGTGTTTG
Found at i:17966508 original size:84 final size:78
Alignment explanation
Indices: 17966414--17966609 Score: 254
Period size: 72 Copynumber: 2.6 Consensus size: 78
17966404 TAGGATGATG
17966414 TTATAAATTGTTGTGTTTAGTTTAGTATTTGATGAGTTTTTAGTAATGTAAAATAATTTTATTAA
1 TTATAAATTGTTGTGTTT-G--T-GT-TTTG-TGAGTTTTTAGTAATGTAAAATAATTTTATTAA
17966479 ATATTTTGTTAGTAATTTA
60 ATATTTTGTTAGTAATTTA
17966498 TTATAAA----T-TG-TTGTGTTTTGTGAGTTTTTAGTAATGTAAAATAATTTTATTAAATATTT
1 TTATAAATTGTTGTGTTTGTGTTTTGTGAGTTTTTAGTAATGTAAAATAATTTTATTAAATATTT
17966557 TGTTAGTAATTTA
66 TGTTAGTAATTTA
17966570 TTATAAA----T-TG-TTGTGTTTTGTGAGTTTTTAGTAATGTAAA
1 TTATAAATTGTTGTGTTTGTGTTTTGTGAGTTTTTAGTAATGTAAA
17966610 TTATTTTGTT
Statistics
Matches: 112, Mismatches: 0, Indels: 12
0.90 0.00 0.10
Matches are distributed among these distances:
72 92 0.82
73 4 0.04
74 2 0.02
75 1 0.01
77 1 0.01
78 2 0.02
79 2 0.02
80 1 0.01
84 7 0.06
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (78 bp):
TTATAAATTGTTGTGTTTGTGTTTTGTGAGTTTTTAGTAATGTAAAATAATTTTATTAAATATTT
TGTTAGTAATTTA
Found at i:17966526 original size:72 final size:70
Alignment explanation
Indices: 17966441--17966738 Score: 388
Period size: 72 Copynumber: 4.3 Consensus size: 70
17966431 TAGTTTAGTA
17966441 TTTGATGAGTTTTTAGTAATGTAAAATAATTTTATTAAATATTTTGTTAGTAATTTATTATAAAT
1 TTTG-TGAGTTTTTAGTAATGTAAAATAATTTTATTAAAT-TTTT-TTAGTAATTTATTATAAAT
17966506 TGTTGTGT
63 TGTTGTGT
17966514 TTTGTGAGTTTTTAGTAATGTAAAATAATTTTATTAAATATTTTGTTAGTAATTTATTATAAATT
1 TTTGTGAGTTTTTAGTAATGTAAAATAATTTTATTAAAT-TTTT-TTAGTAATTTATTATAAATT
17966579 GTTGTGT
64 GTTGTGT
* *
17966586 TTTGTGAGTTTTTAGTAATG-----TAA----ATT--ATTTTGTTAGTAATTTATTATAAATTAT
1 TTTGTGAGTTTTTAGTAATGTAAAATAATTTTATTAAATTTTTTTAGTAATTTATTATAAATTGT
17966640 TGTGT
66 TGTGT
* *
17966645 TTTGTGAGTTTTTATTAATGTAAAATTATTTTGA-TAAATTTTTTTAAG-AATTTATTATAAATT
1 TTTGTGAGTTTTTAGTAATGTAAAATAATTTT-ATTAAATTTTTTT-AGTAATTTATTATAAATT
*
17966708 GTTTTGT
64 GTTGTGT
*
17966715 TTTATGAGTTTTTAGTAATGTAAA
1 TTTGTGAGTTTTTAGTAATGTAAA
17966739 TTTCTTAAAA
Statistics
Matches: 203, Mismatches: 9, Indels: 29
0.84 0.04 0.12
Matches are distributed among these distances:
59 45 0.22
60 3 0.01
61 2 0.01
63 3 0.01
64 2 0.01
67 3 0.01
68 1 0.00
69 1 0.00
70 49 0.24
71 2 0.01
72 88 0.43
73 4 0.02
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.55
Consensus pattern (70 bp):
TTTGTGAGTTTTTAGTAATGTAAAATAATTTTATTAAATTTTTTTAGTAATTTATTATAAATTGT
TGTGT
Found at i:17966566 original size:34 final size:34
Alignment explanation
Indices: 17966453--17966566 Score: 104
Period size: 34 Copynumber: 3.2 Consensus size: 34
17966443 TGATGAGTTT
17966453 TTAGTAATGTAAAATAATTTTATTAAATATTTTG
1 TTAGTAATGTAAAATAATTTTATTAAATATTTTG
* ** * *** *
17966487 TTAGTAATTTATTATAAATTGTTGTGTTTTGTGAGTTT-
1 TTAGTAATGTAAAAT-AA-T-TT-TATTAAAT-ATTTTG
17966525 TTAGTAATGTAAAATAATTTTATTAAATATTTTG
1 TTAGTAATGTAAAATAATTTTATTAAATATTTTG
17966559 TTAGTAAT
1 TTAGTAAT
17966567 TTATTATAAA
Statistics
Matches: 58, Mismatches: 16, Indels: 12
0.67 0.19 0.14
Matches are distributed among these distances:
33 4 0.07
34 24 0.41
35 4 0.07
36 2 0.03
37 4 0.07
38 16 0.28
39 4 0.07
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (34 bp):
TTAGTAATGTAAAATAATTTTATTAAATATTTTG
Found at i:17966586 original size:26 final size:26
Alignment explanation
Indices: 17966548--17966645 Score: 72
Period size: 26 Copynumber: 3.5 Consensus size: 26
17966538 ATAATTTTAT
*
17966548 TAAA-TATTTTGTTAGTAATTTATTA
1 TAAATTATTGTGTTAGTAATTTATTA
* * * *
17966573 TAAATTGTTGTGTTTTGTGAGTTTTTAGTAATG
1 TAAATTATTGTG-TTAGT-A--ATTTA-T--TA
*
17966606 TAAATTATTTTGTTAGTAATTTATTA
1 TAAATTATTGTGTTAGTAATTTATTA
17966632 TAAATTATTGTGTT
1 TAAATTATTGTGTT
17966646 TTGTGAGTTT
Statistics
Matches: 54, Mismatches: 11, Indels: 15
0.68 0.14 0.19
Matches are distributed among these distances:
25 4 0.07
26 19 0.35
27 4 0.07
28 2 0.04
29 4 0.07
30 4 0.07
31 2 0.04
32 4 0.07
33 11 0.20
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (26 bp):
TAAATTATTGTGTTAGTAATTTATTA
Found at i:17966611 original size:33 final size:32
Alignment explanation
Indices: 17966573--17966674 Score: 90
Period size: 26 Copynumber: 3.3 Consensus size: 32
17966563 TAATTTATTA
*
17966573 TAAATTGTTGTGTTTTGTGAGTTTTTAGTAATG
1 TAAATTATTGTGTTTTGTGAGTTTTTA-TAATG
* * * *
17966606 TAAATTATTTTG-TTAGT-A--ATTTAT--TA
1 TAAATTATTGTGTTTTGTGAGTTTTTATAATG
17966632 TAAATTATTGTGTTTTGTGAGTTTTTATTAATG
1 TAAATTATTGTGTTTTGTGAGTTTTTA-TAATG
17966665 TAAAATTATT
1 T-AAATTATT
17966675 TTGATAAATT
Statistics
Matches: 52, Mismatches: 9, Indels: 15
0.68 0.12 0.20
Matches are distributed among these distances:
26 12 0.23
27 4 0.08
28 2 0.04
29 4 0.08
30 4 0.08
31 2 0.04
32 4 0.08
33 12 0.23
34 8 0.15
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (32 bp):
TAAATTATTGTGTTTTGTGAGTTTTTATAATG
Found at i:17966630 original size:131 final size:129
Alignment explanation
Indices: 17966476--17966740 Score: 428
Period size: 131 Copynumber: 2.0 Consensus size: 129
17966466 ATAATTTTAT
*
17966476 TAAA-TATTTTGTTAGTAATTTATTATAAATTGTTGTGTTTTGTGAGTTTTTAGTAATGTAAAAT
1 TAAATTATTTTGTTAGTAATTTATTATAAATTATTGTGTTTTGTGAGTTTTTAGTAATGTAAAAT
*
17966540 AATTTT-ATTAAATATTTTGTT-AGTAATTTATTATAAATTGTTGTGTTTTGTGAGTTTTTAGTA
66 AATTTTGA-TAAAT-TTTT-TTAAG-AATTTATTATAAATTGTTGTGTTTTATGAGTTTTTAGTA
17966603 ATG
127 ATG
*
17966606 TAAATTATTTTGTTAGTAATTTATTATAAATTATTGTGTTTTGTGAGTTTTTATTAATGTAAAAT
1 TAAATTATTTTGTTAGTAATTTATTATAAATTATTGTGTTTTGTGAGTTTTTAGTAATGTAAAAT
* *
17966671 TATTTTGATAAATTTTTTTAAGAATTTATTATAAATTGTTTTGTTTTATGAGTTTTTAGTAATG
66 AATTTTGATAAATTTTTTTAAGAATTTATTATAAATTGTTGTGTTTTATGAGTTTTTAGTAATG
17966735 TAAATT
1 TAAATT
17966741 TCTTAAAAAA
Statistics
Matches: 127, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
129 48 0.38
130 10 0.08
131 68 0.54
132 1 0.01
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (129 bp):
TAAATTATTTTGTTAGTAATTTATTATAAATTATTGTGTTTTGTGAGTTTTTAGTAATGTAAAAT
AATTTTGATAAATTTTTTTAAGAATTTATTATAAATTGTTGTGTTTTATGAGTTTTTAGTAATG
Found at i:17966644 original size:59 final size:59
Alignment explanation
Indices: 17966548--17966677 Score: 226
Period size: 59 Copynumber: 2.2 Consensus size: 59
17966538 ATAATTTTAT
*
17966548 TAAA-TATTTTGTTAGTAATTTATTATAAATTGTTGTGTTTTGTGAGTTTTTAGTAATG
1 TAAATTATTTTGTTAGTAATTTATTATAAATTATTGTGTTTTGTGAGTTTTTAGTAATG
*
17966606 TAAATTATTTTGTTAGTAATTTATTATAAATTATTGTGTTTTGTGAGTTTTTATTAATG
1 TAAATTATTTTGTTAGTAATTTATTATAAATTATTGTGTTTTGTGAGTTTTTAGTAATG
17966665 TAAAATTATTTTG
1 T-AAATTATTTTG
17966678 ATAAATTTTT
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
58 4 0.06
59 53 0.78
60 11 0.16
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (59 bp):
TAAATTATTTTGTTAGTAATTTATTATAAATTATTGTGTTTTGTGAGTTTTTAGTAATG
Found at i:17966648 original size:31 final size:31
Alignment explanation
Indices: 17966554--17966649 Score: 90
Period size: 31 Copynumber: 3.2 Consensus size: 31
17966544 TTATTAAATA
*
17966554 TTTTGTTAGTAATTTATTATAAATTGTTGTG
1 TTTTGTTAGTAATTTATTATAAATTATTGTG
* * * ** * * *
17966585 TTTTGTGAGT-TTTTAGTA-ATGTAAAT-TA
1 TTTTGTTAGTAATTTATTATAAATTATTGTG
17966613 TTTTGTTAGTAATTTATTATAAATTATTGTG
1 TTTTGTTAGTAATTTATTATAAATTATTGTG
17966644 TTTTGT
1 TTTTGT
17966650 GAGTTTTTAT
Statistics
Matches: 45, Mismatches: 17, Indels: 6
0.66 0.25 0.09
Matches are distributed among these distances:
28 10 0.22
29 9 0.20
30 10 0.22
31 16 0.36
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (31 bp):
TTTTGTTAGTAATTTATTATAAATTATTGTG
Found at i:17969102 original size:33 final size:32
Alignment explanation
Indices: 17969065--17969221 Score: 118
Period size: 33 Copynumber: 4.8 Consensus size: 32
17969055 TTTCGGCTCG
*
17969065 TATCCACCATCGTACTCCACTCCTCTCTGCCCA
1 TATCCACCA-CGTACTCCACTCCTCTCAGCCCA
* * *
17969098 TATCCATCGC-CATACTCCACTCCTCTCAGCTCG
1 TATCCA-C-CACGTACTCCACTCCTCTCAGCCCA
** *
17969131 TATCCACCACTGTACTCCACTCCTCTCAATCCG
1 TATCCACCAC-GTACTCCACTCCTCTCAGCCCA
* ** * * *
17969164 TATCCACCGCCGTACTCTGCTCTTCCCAGCCCG
1 TATCCACC-ACGTACTCCACTCCTCTCAGCCCA
* *
17969197 TATCCACCGCCGAACTCCACTCCTC
1 TATCCACC-ACGTACTCCACTCCTC
17969222 CCGACTCAAA
Statistics
Matches: 100, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
31 1 0.01
32 2 0.02
33 94 0.94
34 2 0.02
35 1 0.01
ACGTcount: A:0.18, C:0.48, G:0.09, T:0.25
Consensus pattern (32 bp):
TATCCACCACGTACTCCACTCCTCTCAGCCCA
Found at i:17969137 original size:66 final size:65
Alignment explanation
Indices: 17969060--17969221 Score: 180
Period size: 66 Copynumber: 2.4 Consensus size: 65
17969050 GCTTCTTTCG
** * *
17969060 GCTCGTATCCACCATCGTACTCCACTCCTCTCTGCCCATATCCATCGCCATACTCCACTCCTCTC
1 GCTCGTATCCACCA-CGTACTCCACTCCTCTCAACCCATATCCACCGCCATACTCCACTCCTCCC
17969125 A
65 A
* * * ** *
17969126 GCTCGTATCCACCACTGTACTCCACTCCTCTCAATCCGTATCCACCGCCGTACTCTGCTCTTCCC
1 GCTCGTATCCACCAC-GTACTCCACTCCTCTCAACCCATATCCACCGCCATACTCCACTCCTCCC
17969191 A
65 A
* * *
17969192 GCCCGTATCCACCGCCGAACTCCACTCCTC
1 GCTCGTATCCACC-ACGTACTCCACTCCTC
17969222 CCGACTCAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
65 1 0.01
66 79 0.98
67 1 0.01
ACGTcount: A:0.17, C:0.48, G:0.10, T:0.25
Consensus pattern (65 bp):
GCTCGTATCCACCACGTACTCCACTCCTCTCAACCCATATCCACCGCCATACTCCACTCCTCCCA
Found at i:17983712 original size:3 final size:3
Alignment explanation
Indices: 17983686--17983761 Score: 52
Period size: 3 Copynumber: 26.0 Consensus size: 3
17983676 ATTTTCGGCA
* * * *
17983686 AAG AAA AAG AAG AAA AAG AGAG AAG AAG -GG AAG AAG -GG AAG AAG
1 AAG AAG AAG AAG AAG AAG A-AG AAG AAG AAG AAG AAG AAG AAG AAG
* *
17983730 -GG AAG AAG -AG AAG AAG AAG AAAG AAA AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG
17983762 GAGAGGAGGA
Statistics
Matches: 55, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
2 5 0.09
3 44 0.80
4 6 0.11
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:17983718 original size:8 final size:8
Alignment explanation
Indices: 17983707--17983745 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
17983697 GAAAAAGAGA
17983707 GAAGAAGG
1 GAAGAAGG
17983715 GAAGAAGG
1 GAAGAAGG
17983723 GAAGAAGG
1 GAAGAAGG
*
17983731 GAAGAAGA
1 GAAGAAGG
17983739 GAAGAAG
1 GAAGAAG
17983746 AAGAAAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (8 bp):
GAAGAAGG
Found at i:17983746 original size:8 final size:8
Alignment explanation
Indices: 17983693--17983746 Score: 60
Period size: 8 Copynumber: 7.1 Consensus size: 8
17983683 GCAAAGAAAA
17983693 AGAAGAA-
1 AGAAGAAG
17983700 A-AAG-AG
1 AGAAGAAG
17983706 AGAAGAAG
1 AGAAGAAG
*
17983714 GGAAGAAG
1 AGAAGAAG
*
17983722 GGAAGAAG
1 AGAAGAAG
*
17983730 GGAAGAAG
1 AGAAGAAG
17983738 AGAAGAAG
1 AGAAGAAG
17983746 A
1 A
17983747 AGAAAGAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
5 1 0.02
6 4 0.10
7 4 0.10
8 33 0.79
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (8 bp):
AGAAGAAG
Found at i:17983759 original size:16 final size:17
Alignment explanation
Indices: 17983686--17983761 Score: 54
Period size: 16 Copynumber: 4.6 Consensus size: 17
17983676 ATTTTCGGCA
17983686 AAGAAA-AAGAAGAAA-
1 AAGAAAGAAGAAGAAAG
* *
17983701 AAGAGAGAAGAAG--GG
1 AAGAAAGAAGAAGAAAG
* *
17983716 AAGAAGGGAAGAAGGGAAG
1 AAGAA-AGAAGAA-GAAAG
17983735 AAGAGAAGAAGAAGAAAG
1 AAGA-AAGAAGAAGAAAG
17983753 AA-AAAGAAG
1 AAGAAAGAAG
17983762 GAGAGGAGGA
Statistics
Matches: 47, Mismatches: 7, Indels: 13
0.70 0.10 0.19
Matches are distributed among these distances:
15 9 0.19
16 18 0.38
17 2 0.04
18 6 0.13
19 11 0.23
20 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (17 bp):
AAGAAAGAAGAAGAAAG
Found at i:17983846 original size:14 final size:14
Alignment explanation
Indices: 17983794--17983859 Score: 64
Period size: 14 Copynumber: 4.6 Consensus size: 14
17983784 CGGCTGAGAG
17983794 AAGAAAAAGAA--A
1 AAGAAAAAGAAGGA
17983806 AAGAAAAAGAGAAGGA
1 AAG-AAAA-AGAAGGA
* *
17983822 GAAGAAGAAGAGGGA
1 -AAGAAAAAGAAGGA
*
17983837 AGGAAAAAGAAGGA
1 AAGAAAAAGAAGGA
17983851 AAGAAAAAG
1 AAGAAAAAG
17983860 GTAATTTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
12 3 0.07
13 4 0.09
14 23 0.53
15 6 0.14
16 4 0.09
17 3 0.07
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
AAGAAAAAGAAGGA
Found at i:17983846 original size:17 final size:17
Alignment explanation
Indices: 17983802--17983859 Score: 50
Period size: 19 Copynumber: 3.4 Consensus size: 17
17983792 AGAAGAAAAA
*
17983802 GAAAAAGAAAAAGAGAAG
1 GAAAAAG-AAGAGAGAAG
*
17983820 GAGAAGAAGAAGAGGGAAG
1 GA-AA-AAGAAGAGAGAAG
17983839 GAAAAAGAAG-GA-AA-
1 GAAAAAGAAGAGAGAAG
17983853 GAAAAAG
1 GAAAAAG
17983860 GTAATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
14 7 0.20
15 2 0.06
16 1 0.03
17 6 0.17
18 4 0.11
19 12 0.34
20 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
GAAAAAGAAGAGAGAAG
Found at i:17985002 original size:72 final size:72
Alignment explanation
Indices: 17984862--17985002 Score: 210
Period size: 72 Copynumber: 2.0 Consensus size: 72
17984852 AGTCCGAGCG
* * *
17984862 ATCGCATTCACATTCGATTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACTATTTCCCGG
1 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCCCAG
17984927 GCTCGTC
66 GCTCGTC
* * * * *
17984934 ATCGCATTCACTTTCGGCTGATACTTCTTATCATCCGGATTTTGCGGGCAATGACAATTTCTCAG
1 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCCCAG
17984999 GCTC
66 GCTC
17985003 ATCGGGGGGC
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (72 bp):
ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCCCAG
GCTCGTC
Found at i:17989174 original size:19 final size:17
Alignment explanation
Indices: 17989140--17989176 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
17989130 AAATTAGACC
17989140 TTCTTTTTTTCTTCTCT
1 TTCTTTTTTTCTTCTCT
17989157 TTCTTTTTCTTCCTTCTCT
1 TTCTTTTT-TT-CTTCTCT
17989176 T
1 T
17989177 CTCCTTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 2 0.11
19 8 0.44
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (17 bp):
TTCTTTTTTTCTTCTCT
Found at i:17989176 original size:15 final size:15
Alignment explanation
Indices: 17989138--17989176 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
17989128 AAAAATTAGA
*
17989138 CCTTCTTTTTTTCTT
1 CCTTCTCTTTTTCTT
17989153 CTCTT-TCTTTTTCTT
1 C-CTTCTCTTTTTCTT
17989168 CCTTCTCTT
1 CCTTCTCTT
17989177 CTCCTTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 3 0.14
15 15 0.71
16 3 0.14
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (15 bp):
CCTTCTCTTTTTCTT
Found at i:17989727 original size:4 final size:4
Alignment explanation
Indices: 17989705--17989765 Score: 50
Period size: 4 Copynumber: 14.0 Consensus size: 4
17989695 TTTCGAGTAA
* *
17989705 AATT AAATT AATTT GATT AATT AATT AAATTT AATT AATT AGTT AATT
1 AATT -AATT AA-TT AATT AATT AATT -AA-TT AATT AATT AATT AATT
*
17989753 AATCA AATT AATT
1 AAT-T AATT AATT
17989766 CGGTTAGGGG
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
4 30 0.65
5 14 0.30
6 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:17989728 original size:18 final size:19
Alignment explanation
Indices: 17989705--17989745 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
17989695 TTTCGAGTAA
*
17989705 AATTAAATT-AATTTGATT
1 AATTAAATTAAATTTAATT
17989723 AATT-AATTAAATTTAATT
1 AATTAAATTAAATTTAATT
17989741 AATTA
1 AATTA
17989746 GTTAATTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
AATTAAATTAAATTTAATT
Found at i:17989731 original size:22 final size:24
Alignment explanation
Indices: 17989705--17989765 Score: 72
Period size: 26 Copynumber: 2.5 Consensus size: 24
17989695 TTTCGAGTAA
17989705 AATTAAATTAATT-TGA-TTAATT
1 AATTAAATTAATTATGAGTTAATT
*
17989727 AATTAAATTTAATTAATTAGTTAATT
1 AATTAAA-TTAATT-ATGAGTTAATT
*
17989753 AATCAAATTAATT
1 AATTAAATTAATT
17989766 CGGTTAGGGG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 7 0.21
23 6 0.18
25 8 0.24
26 12 0.36
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48
Consensus pattern (24 bp):
AATTAAATTAATTATGAGTTAATT
Found at i:17989750 original size:18 final size:18
Alignment explanation
Indices: 17989705--17989750 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
17989695 TTTCGAGTAA
*
17989705 AATTAAATT-AATTTGATT
1 AATT-AATTAAATTTAATT
17989723 AATTAATTAAATTTAATT
1 AATTAATTAAATTTAATT
*
17989741 AATTAGTTAA
1 AATTAATTAA
17989751 TTAATCAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (18 bp):
AATTAATTAAATTTAATT
Found at i:17989772 original size:26 final size:26
Alignment explanation
Indices: 17989704--17989765 Score: 81
Period size: 27 Copynumber: 2.4 Consensus size: 26
17989694 ATTTCGAGTA
* * *
17989704 AAATTAAATTAATTTGATTAATTAATT
1 AAATTTAATTAATTAG-TTAATTAATC
17989731 AAATTTAATTAATTAGTTAATTAATC
1 AAATTTAATTAATTAGTTAATTAATC
17989757 AAA-TTAATT
1 AAATTTAATT
17989766 CGGTTAGGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
25 6 0.19
26 12 0.38
27 14 0.44
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (26 bp):
AAATTTAATTAATTAGTTAATTAATC
Found at i:17990705 original size:234 final size:236
Alignment explanation
Indices: 17990272--17991090 Score: 1317
Period size: 236 Copynumber: 3.5 Consensus size: 236
17990262 AAAATAGTAT
* * * * * *
17990272 TGGAGCATTTACGATTAGATAATTGATTTATACATGATGATATTGGGATAATGTTGTAATTGTTT
1 TGGAGCATTTAGGGTTAGATGATTGATTTATGCATGATAATATTGGAATAATGTTGTAATTGTTT
* * * *
17990337 CT-AGTTTTTATCTATAAAAAATGGTGTTTAATCATGATATTTAGTTTCAGTCAATGACCAAAAT
66 CTGA-TTTTTATCTATAAAAAATGGTGTTTAATCATGATATTTGGTTTCATTCAAGGACCAAAAA
17990401 AGGTTTG-TTAGTTACTGCTACCCA-TTGTTTTCTTGATGGAATCAGTTAAAAGTTATGGAATTT
130 AGGTTTGTTTA-TTACTGCTACCCATTTGTTTTCTTGATGGAATCAGTTAAAAGTTATGGAATTT
*
17990464 TTGCACGTTGTAAACAATTTGATGAAGTTCTCGGAAATCATCC
194 TTGCACGTTGTAAACAATTTGATGAAGTTCTCGGAAATCATCG
17990507 TGGAGCATTTAGGGTTAGATGATTGATTTATGCATGATAATATTGGAATAATGTTGTAATTGTTT
1 TGGAGCATTTAGGGTTAGATGATTGATTTATGCATGATAATATTGGAATAATGTTGTAATTGTTT
17990572 CTGA-TTTTATCTAT-AAAAATGGTGTTTAATCATGATATTTGGTTTCATTCAAGGACCAAAAAA
66 CTGATTTTTATCTATAAAAAATGGTGTTTAATCATGATATTTGGTTTCATTCAAGGACCAAAAAA
* *
17990635 GGTTTGTTTATTACTGCTACCCATTTATTTTCTTGATGGAATCAATTAAAAGTTATGGAATTTTT
131 GGTTTGTTTATTACTGCTACCCATTTGTTTTCTTGATGGAATCAGTTAAAAGTTATGGAATTTTT
* *
17990700 GCACGTTATAAACAATTTGATGAAGTTCTTGGAAATCATCG
196 GCACGTTGTAAACAATTTGATGAAGTTCTCGGAAATCATCG
* * *
17990741 TAGAGCATTTAGGGTTAGATGA-TCATTTTATGCATGATAATATTGGAATAATGTTGTAATTATT
1 TGGAGCATTTAGGGTTAGATGATTGA-TTTATGCATGATAATATTGGAATAATGTTGTAATTGTT
*
17990805 TCTAATTTTTATCTATAAAAAATGGTGTTTAATCATGATATTTGGTTTCATTCAAGGACCAAAAA
65 TCTGATTTTTATCTATAAAAAATGGTGTTTAATCATGATATTTGGTTTCATTCAAGGACCAAAAA
* * * *
17990870 GGGTTTGTTTATTACTGCTACCCATTTGTTTTCTTGATGGAACCAGTTAAAAGGTATGGAATTTC
130 AGGTTTGTTTATTACTGCTACCCATTTGTTTTCTTGATGGAATCAGTTAAAAGTTATGGAATTTT
*
17990935 TGCACGTTGTGAACAATTTGATGAAGTTCTCGGAAATCATCG
195 TGCACGTTGTAAACAATTTGATGAAGTTCTCGGAAATCATCG
* * * *
17990977 TGGAGCATTTAGGGTTAGATGATCGGTTTATGCATGATAATATTAGAATAATGTTGTAATTGTTC
1 TGGAGCATTTAGGGTTAGATGATTGATTTATGCATGATAATATTGGAATAATGTTGTAATTGTTT
17991042 CTGATTTTTATCTATAAAAAATGGTGTTTAATCATGATATTTGGTTTCA
66 CTGATTTTTATCTATAAAAAATGGTGTTTAATCATGATATTTGGTTTCA
17991091 ATCATGCAAT
Statistics
Matches: 541, Mismatches: 36, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
233 66 0.12
234 152 0.28
235 71 0.13
236 252 0.47
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.41
Consensus pattern (236 bp):
TGGAGCATTTAGGGTTAGATGATTGATTTATGCATGATAATATTGGAATAATGTTGTAATTGTTT
CTGATTTTTATCTATAAAAAATGGTGTTTAATCATGATATTTGGTTTCATTCAAGGACCAAAAAA
GGTTTGTTTATTACTGCTACCCATTTGTTTTCTTGATGGAATCAGTTAAAAGTTATGGAATTTTT
GCACGTTGTAAACAATTTGATGAAGTTCTCGGAAATCATCG
Found at i:17991747 original size:64 final size:64
Alignment explanation
Indices: 17991643--17991767 Score: 160
Period size: 64 Copynumber: 2.0 Consensus size: 64
17991633 TCTTTCGAGC
* * * * * *
17991643 AATTAATCTAATTGTTGAGCCATATTCCTATGCTAATAATGTCGACCAAATTGATTAAGAATTA
1 AATTAATCTAACTATGGAGCCATATTCCTATGCCAATAATGTCAACCAAATTAATTAAGAATTA
* ** *
17991707 AATTAATCTAACTATGGAGCTATATTCCTATGCCGGTAATGTTAACCAAATTAATTAAGAA
1 AATTAATCTAACTATGGAGCCATATTCCTATGCCAATAATGTCAACCAAATTAATTAAGAA
17991768 CTATCCCAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
64 51 1.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.34
Consensus pattern (64 bp):
AATTAATCTAACTATGGAGCCATATTCCTATGCCAATAATGTCAACCAAATTAATTAAGAATTA
Found at i:17996460 original size:17 final size:17
Alignment explanation
Indices: 17996438--17996472 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
17996428 GAACTAAAAT
17996438 TTACTTGTGGCCACCAC
1 TTACTTGTGGCCACCAC
17996455 TTACTTGTGGCCACCAC
1 TTACTTGTGGCCACCAC
17996472 T
1 T
17996473 GAGCCCTCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.31
Consensus pattern (17 bp):
TTACTTGTGGCCACCAC
Found at i:18000943 original size:9 final size:9
Alignment explanation
Indices: 18000929--18000980 Score: 50
Period size: 9 Copynumber: 5.3 Consensus size: 9
18000919 TAATAAATGA
18000929 AATTTAAAT
1 AATTTAAAT
18000938 AATTTAATAT
1 AATTTAA-AT
*
18000948 AATAATAAAT
1 AAT-TTAAAT
18000958 GATATTTAAAT
1 -A-ATTTAAAT
*
18000969 AATTTATAT
1 AATTTAAAT
18000978 AAT
1 AAT
18000981 GATATATGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
9 17 0.47
10 8 0.22
11 9 0.25
12 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (9 bp):
AATTTAAAT
Found at i:18000947 original size:31 final size:31
Alignment explanation
Indices: 18000912--18001038 Score: 139
Period size: 31 Copynumber: 4.0 Consensus size: 31
18000902 TAAAAACTTA
*
18000912 AATATACTAATAAATGAAATTTAAATAATTT
1 AATATAATAATAAATGAAATTTAAATAATTT
*
18000943 AATATAATAATAAATGATATTTAAATAATTT
1 AATATAATAATAAATGAAATTTAAATAATTT
* * *
18000974 -ATATAATGATATATGAAATATTTAACTAATTT
1 AATATAATAATAAATG-AA-ATTTAAATAATTT
* * * *
18001006 AATAAAATAATACATAAAATATAAATTAATTT
1 AATATAATAATAAATGAAATTTAAA-TAATTT
18001038 A
1 A
18001039 TTTTTTATAC
Statistics
Matches: 80, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
30 13 0.16
31 35 0.44
32 21 0.26
33 11 0.14
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.39
Consensus pattern (31 bp):
AATATAATAATAAATGAAATTTAAATAATTT
Found at i:18000981 original size:23 final size:22
Alignment explanation
Indices: 18000939--18000985 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
18000929 AATTTAAATA
18000939 ATTTAATATAATAATAAATGAT
1 ATTTAATATAATAATAAATGAT
*
18000961 ATTTAA-ATAATTTATATAATGAT
1 ATTTAATATAA-TAATA-AATGAT
18000984 AT
1 AT
18000986 ATGAAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 4 0.18
22 10 0.45
23 8 0.36
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (22 bp):
ATTTAATATAATAATAAATGAT
Found at i:18003894 original size:13 final size:13
Alignment explanation
Indices: 18003848--18003897 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 13
18003838 GCTTTTTCCC
18003848 ATCAGTTTTTTTT
1 ATCAGTTTTTTTT
* * *
18003861 TTC--TTTCTTTC
1 ATCAGTTTTTTTT
*
18003872 ATCAGCTTTTTTT
1 ATCAGTTTTTTTT
18003885 ATCAGTTTTTTTT
1 ATCAGTTTTTTTT
18003898 TAAACTTCAG
Statistics
Matches: 27, Mismatches: 8, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
11 8 0.30
13 19 0.70
ACGTcount: A:0.12, C:0.14, G:0.06, T:0.68
Consensus pattern (13 bp):
ATCAGTTTTTTTT
Found at i:18006791 original size:28 final size:27
Alignment explanation
Indices: 18006739--18006791 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
18006729 CTATTCAGAA
* *
18006739 ATCAGTGTTAACTAGGCCTTAGCCCAT
1 ATCAGTATTAACTAGGCCATAGCCCAT
*
18006766 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTAGGCCATAGCCC
18006792 CTTACAGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTAGGCCATAGCCCAT
Found at i:18006876 original size:60 final size:59
Alignment explanation
Indices: 18006753--18006887 Score: 148
Period size: 60 Copynumber: 2.2 Consensus size: 59
18006743 GTGTTAACTA
* * *
18006753 GGCCTTAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG
1 GGCC-TAGCCCATATCAGTATCAATCTGGACCATAGCCCATTACAGT-ACAGAGTATACTG
* * *
18006814 GGCCTAGCCCATATCAGTATCAATCTGGATCGTAGCCCTATTACAAGT-C-GAGATATATTG
1 GGCCTAGCCCATATCAGTATCAATCTGGACCATAGCCC-ATTAC-AGTACAGAG-TATACTG
*
18006874 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
18006888 TAACACAGTT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 3 0.05
60 50 0.78
61 8 0.12
62 3 0.05
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (59 bp):
GGCCTAGCCCATATCAGTATCAATCTGGACCATAGCCCATTACAGTACAGAGTATACTG
Found at i:18006923 original size:19 final size:20
Alignment explanation
Indices: 18006880--18006935 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
18006870 ATTGGGCCTT
18006880 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
18006900 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
18006919 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
18006936 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:18008645 original size:153 final size:153
Alignment explanation
Indices: 18008367--18008673 Score: 614
Period size: 153 Copynumber: 2.0 Consensus size: 153
18008357 TGAATGCCCG
18008367 AACTGCAGCTCGAACCCCAGACCTCCGTCTGCCTTGCGCCCACCTCCGTGCTACTGGCCACTGCA
1 AACTGCAGCTCGAACCCCAGACCTCCGTCTGCCTTGCGCCCACCTCCGTGCTACTGGCCACTGCA
18008432 CCATGCTTTCTACCTTGCTAATACATGGTCACAATAAATTATAAACCTTACCTGCTTCAGTTCTG
66 CCATGCTTTCTACCTTGCTAATACATGGTCACAATAAATTATAAACCTTACCTGCTTCAGTTCTG
18008497 ACCCACTTTAAAAATTAAACAGA
131 ACCCACTTTAAAAATTAAACAGA
18008520 AACTGCAGCTCGAACCCCAGACCTCCGTCTGCCTTGCGCCCACCTCCGTGCTACTGGCCACTGCA
1 AACTGCAGCTCGAACCCCAGACCTCCGTCTGCCTTGCGCCCACCTCCGTGCTACTGGCCACTGCA
18008585 CCATGCTTTCTACCTTGCTAATACATGGTCACAATAAATTATAAACCTTACCTGCTTCAGTTCTG
66 CCATGCTTTCTACCTTGCTAATACATGGTCACAATAAATTATAAACCTTACCTGCTTCAGTTCTG
18008650 ACCCACTTTAAAAATTAAACAGA
131 ACCCACTTTAAAAATTAAACAGA
18008673 A
1 A
18008674 TTCACCTGCA
Statistics
Matches: 154, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
153 154 1.00
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.26
Consensus pattern (153 bp):
AACTGCAGCTCGAACCCCAGACCTCCGTCTGCCTTGCGCCCACCTCCGTGCTACTGGCCACTGCA
CCATGCTTTCTACCTTGCTAATACATGGTCACAATAAATTATAAACCTTACCTGCTTCAGTTCTG
ACCCACTTTAAAAATTAAACAGA
Found at i:18009276 original size:23 final size:25
Alignment explanation
Indices: 18009221--18009277 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 25
18009211 TGAAAATTTC
18009221 AAATACAATAATATATATATGTTCCT
1 AAAT-CAATAATATATATATGTTCCT
18009247 -AAT-AATAAT-TATA-AT-TTCCAT
1 AAATCAATAATATATATATGTTCC-T
18009268 AAATCAATAA
1 AAATCAATAA
18009278 AAATAGATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
20 4 0.14
21 3 0.11
22 7 0.25
23 11 0.39
25 3 0.11
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.37
Consensus pattern (25 bp):
AAATCAATAATATATATATGTTCCT
Found at i:18009977 original size:3 final size:3
Alignment explanation
Indices: 18009969--18010457 Score: 132
Period size: 3 Copynumber: 158.7 Consensus size: 3
18009959 TAAATTAATA
18009969 TAT TAT TAT TACT TAT TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * *
18010016 CAC TAT TAT TAT TAC T-T TAC TAT TAT AAT T-T AAT GTAT TGT CAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
* * * * *
18010060 TAT TAC TAT TAT T-T TAT TAT TAT CAC TAT TAT TAT TAT T-T TAG TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
18010106 TA- AACT AAT TAAGT TCA- TAT TGT TAT TAT TA- TAT TAT ATAT TCT
1 TAT TA-T TAT T-A-T T-AT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * *
18010150 CT-T T-T TGT GT-T TATT TATT TAT TGT T-T TAT TAT TAAT TAA T-T
1 -TAT TAT TAT -TAT TA-T TA-T TAT TAT TAT TAT TAT T-AT TAT TAT
* * * *
18010192 TAG TAT TAT TAAT TAT TAAT TAT TAAT TAT TAT T-T TCCT TAT TAA CAT
1 TAT TAT TAT T-AT TAT T-AT TAT T-AT TAT TAT TAT T-AT TAT TAT TAT
* * * * *
18010240 GTCAT CAT T-T TAT TAA TA- TAT GAT TAT TAC TAT TGT TAAT GTAT TAT
1 -T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT
* * * * * * *
18010287 TAT TTT CTACT T-T GACT TGT TGT GTCCT TAT TAC TAT TAT TGT TAT
1 TAT TAT -TA-T TAT TA-T TAT TAT -T-AT TAT TAT TAT TAT TAT TAT
* * * * * *
18010333 TGT TAT TAT TCAT GTAT ATAT TAT GAT TAT TGT TAT TAT TAA CAT TCT
1 TAT TAT TAT T-AT -TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
18010381 TAT TGT TAC TAT TAT TTT TAT TCCT T-T TAT TATT TAT TAT CAA TA-
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TA-T TAT TAT TAT TAT
*
18010426 TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
18010458 ACACTCTTTA
Statistics
Matches: 356, Mismatches: 85, Indels: 90
0.67 0.16 0.17
Matches are distributed among these distances:
2 28 0.08
3 262 0.74
4 57 0.16
5 9 0.03
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:18010040 original size:41 final size:41
Alignment explanation
Indices: 18009969--18010097 Score: 131
Period size: 41 Copynumber: 3.2 Consensus size: 41
18009959 TAAATTAATA
* *
18009969 TATTATTATTAC--TTATTATTA-TTTATTATTATTATTAT
1 TATTATTATCACTATTATTATTATTTTATTATTATAATTAT
* *
18010007 TATTATTATCACTATTATTATTACTTTACTATTATAATT-T
1 TATTATTATCACTATTATTATTATTTTATTATTATAATTAT
* * * * * *
18010047 AATGTATTGTCATTATTACTATTATTTTATTATTATCACTAT
1 TAT-TATTATCACTATTATTATTATTTTATTATTATAATTAT
18010089 TATTATTAT
1 TATTATTAT
18010098 TTTAGTACTA
Statistics
Matches: 73, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
38 11 0.15
40 12 0.16
41 47 0.64
42 3 0.04
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.60
Consensus pattern (41 bp):
TATTATTATCACTATTATTATTATTTTATTATTATAATTAT
Found at i:18010116 original size:26 final size:26
Alignment explanation
Indices: 18010060--18010112 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
18010050 GTATTGTCAT
* * *
18010060 TATTACTATTATTTTATTATTATCAC
1 TATTACTATTATTTTAGTACTATAAC
*
18010086 TATTATTATTATTTTAGTACTA-AAC
1 TATTACTATTATTTTAGTACTATAAC
18010111 TA
1 TA
18010113 ATTAAGTTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (26 bp):
TATTACTATTATTTTAGTACTATAAC
Found at i:18010204 original size:14 final size:14
Alignment explanation
Indices: 18010175--18010225 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
18010165 TATTTATTGT
18010175 TTTATTATTAATTAA
1 TTTATTATT-ATTAA
*
18010190 TTTAGTATTATTAA
1 TTTATTATTATTAA
18010204 -TTATTAATTATTAA
1 TTTATT-ATTATTAA
18010218 -TTATTATT
1 TTTATTATT
18010226 TTCCTTATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 7 0.21
14 18 0.55
15 8 0.24
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (14 bp):
TTTATTATTATTAA
Found at i:18010206 original size:7 final size:7
Alignment explanation
Indices: 18010196--18010223 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
18010186 TTAATTTAGT
18010196 ATTATTA
1 ATTATTA
18010203 ATTATTA
1 ATTATTA
18010210 ATTATTA
1 ATTATTA
18010217 ATTATTA
1 ATTATTA
18010224 TTTTCCTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATTA
Found at i:18010552 original size:17 final size:17
Alignment explanation
Indices: 18010526--18010559 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
18010516 TTTTATTATC
* *
18010526 ATTATTACTATCGTATT
1 ATTATCACTATCATATT
18010543 ATTATCACTATCATATT
1 ATTATCACTATCATATT
18010560 TTCATCTATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.15, G:0.03, T:0.50
Consensus pattern (17 bp):
ATTATCACTATCATATT
Found at i:18014002 original size:19 final size:19
Alignment explanation
Indices: 18013978--18014017 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
18013968 AATACATATG
18013978 AATGCAGTCAAGTATTAAA
1 AATGCAGTCAAGTATTAAA
18013997 AATGCAGTCAAGTATTAAA
1 AATGCAGTCAAGTATTAAA
18014016 AA
1 AA
18014018 AACTACCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.25
Consensus pattern (19 bp):
AATGCAGTCAAGTATTAAA
Found at i:18019530 original size:25 final size:25
Alignment explanation
Indices: 18019496--18019547 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
18019486 ATTGGTTACT
*
18019496 TAGTGTCCAAGAAACTACTAATTGG
1 TAGTGTCCAAGAAACTACAAATTGG
18019521 TAGTGTCCAAGAAACTACAAATTGG
1 TAGTGTCCAAGAAACTACAAATTGG
18019546 TA
1 TA
18019548 AACTTGAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (25 bp):
TAGTGTCCAAGAAACTACAAATTGG
Found at i:18022791 original size:63 final size:62
Alignment explanation
Indices: 18022598--18022807 Score: 186
Period size: 63 Copynumber: 3.3 Consensus size: 62
18022588 ATCTATTTCC
* * * * * *
18022598 AAAATAGTGAGTTACATGGCATGGACACATGCCTATGTATCCAGCCCGTGTACCTTTGATTCT
1 AAAACAGTGAGTTACAT-GCCTGGACACACGCCTGTGTCTCCAGCCCGTGTACCTTTAATTCT
* * * * * * * ** * * *
18022661 AAAATAGTAAGTTACACTGCTTAGACACACACCCGTTTCTCCAGCCTATGTGCCTCTAATTCC
1 AAAACAGTGAGTTACA-TGCCTGGACACACGCCTGTGTCTCCAGCCCGTGTACCTTTAATTCT
* * * *
18022724 AAAACAGTGAGTTACATAGCCTGGACACACGCTTGTGTCTCTAGCCCGTATACCTTTTATTCT
1 AAAACAGTGAGTTACAT-GCCTGGACACACGCCTGTGTCTCCAGCCCGTGTACCTTTAATTCT
*
18022787 AAAACAATGAGTTACATGCCT
1 AAAACAGTGAGTTACATGCCT
18022808 ATGTCTTTAG
Statistics
Matches: 113, Mismatches: 32, Indels: 5
0.75 0.21 0.03
Matches are distributed among these distances:
62 5 0.04
63 107 0.95
64 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (62 bp):
AAAACAGTGAGTTACATGCCTGGACACACGCCTGTGTCTCCAGCCCGTGTACCTTTAATTCT
Found at i:18022822 original size:126 final size:126
Alignment explanation
Indices: 18022582--18022808 Score: 303
Period size: 126 Copynumber: 1.8 Consensus size: 126
18022572 ATCACAGTCC
* * * *
18022582 ATGTGCATCTATTTCCAAAATAGTGAGTTACATGGCATGGACACATGCCTATGTATCCAGCCCGT
1 ATGTGCATCTAATTCCAAAACAGTGAGTTACATAGCATGGACACACGCCTATGTATCCAGCCCGT
* * * *
18022647 GTACCTTTGATTCTAAAATAGTAAGTTACACTGCTTAGACACACACCCGTTTCTCCAGCCT
66 ATACCTTTGATTCTAAAACAATAAGTTACACTGCCTAGACACACACCCGTTTCTCCAGCCT
* * * * * *
18022708 ATGTGCCTCTAATTCCAAAACAGTGAGTTACATAGCCTGGACACACGCTTGTGTCTCTAGCCCGT
1 ATGTGCATCTAATTCCAAAACAGTGAGTTACATAGCATGGACACACGCCTATGTATCCAGCCCGT
* *
18022773 ATACCTTTTATTCTAAAACAATGAGTTACA-TGCCTA
66 ATACCTTTGATTCTAAAACAATAAGTTACACTGCCTA
18022809 TGTCTTTAGC
Statistics
Matches: 85, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
125 5 0.06
126 80 0.94
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (126 bp):
ATGTGCATCTAATTCCAAAACAGTGAGTTACATAGCATGGACACACGCCTATGTATCCAGCCCGT
ATACCTTTGATTCTAAAACAATAAGTTACACTGCCTAGACACACACCCGTTTCTCCAGCCT
Found at i:18024455 original size:45 final size:45
Alignment explanation
Indices: 18024391--18024495 Score: 149
Period size: 45 Copynumber: 2.3 Consensus size: 45
18024381 ATTGTAATTA
* *
18024391 CTCACATGAGCTGTGAATCGAGACATTAAGCTTTACTCGATGCTT-
1 CTCACATGAGCTGTGAATCGAGACATTAACCTTTACTCGAT-ATTG
* **
18024436 CTCACATGAGTTGTGAATCGAGATGTTAACCTTTACTCGATATTG
1 CTCACATGAGCTGTGAATCGAGACATTAACCTTTACTCGATATTG
18024481 CTCACATGAGCTGTG
1 CTCACATGAGCTGTG
18024496 GAGAATCCGC
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 2 0.04
45 51 0.96
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (45 bp):
CTCACATGAGCTGTGAATCGAGACATTAACCTTTACTCGATATTG
Found at i:18028484 original size:13 final size:14
Alignment explanation
Indices: 18028460--18028492 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
18028450 TACAGAAAAT
18028460 AGAATCAAATATAC
1 AGAATCAAATATAC
*
18028474 A-AATCAGATATAC
1 AGAATCAAATATAC
18028487 AGAATC
1 AGAATC
18028493 CTACCCCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.55, C:0.15, G:0.09, T:0.21
Consensus pattern (14 bp):
AGAATCAAATATAC
Found at i:18032058 original size:46 final size:46
Alignment explanation
Indices: 18032006--18032504 Score: 678
Period size: 46 Copynumber: 10.8 Consensus size: 46
18031996 AGTGTGCTCT
* *
18032006 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
18032052 CTGATATGAAAT-ATGTAAGATCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGA-GTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
18032098 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCACGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
18032144 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
18032190 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * **
18032236 ATGATGGGAAAATGAATAAGACCATAATTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
18032283 GTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
18032329 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
18032375 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * * *
18032421 ATGACGGGAAAATGAATAATACAATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
18032468 ATAACA-GAAAATGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
18032505 TATGACATCA
Statistics
Matches: 407, Mismatches: 42, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
46 328 0.81
47 79 0.19
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Done.