Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 78 of 444
Found at i:18454905 original size:68 final size:69
Alignment explanation
Indices: 18454793--18454924 Score: 203
Period size: 68 Copynumber: 1.9 Consensus size: 69
18454783 AAACAGAAAT
* *
18454793 TGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTTTTTTG
1 TGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTTTTG
18454858 ACAAC
65 ACAAC
* * *
18454863 TGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 TGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTTTT
18454925 TGAAAGACAG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
68 40 0.70
70 17 0.30
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (69 bp):
TGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTTTTGA
CAAC
Found at i:18454939 original size:70 final size:69
Alignment explanation
Indices: 18454794--18454939 Score: 195
Period size: 68 Copynumber: 2.1 Consensus size: 69
18454784 AACAGAAATT
* * *
18454794 GAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTTTTTTGA
1 GAAATTACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTTTTGA
* *
18454859 CAACT
65 AAACA
* *
18454864 GAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGA
1 GAAATTACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGA-TTTTTTTGA
18454928 AAGACA
65 AA-ACA
18454934 GAAATT
1 GAAATT
18454940 GAAAAACGAA
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
68 33 0.49
69 10 0.15
70 24 0.36
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (69 bp):
GAAATTACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTTTTGAA
AACA
Found at i:18455086 original size:88 final size:88
Alignment explanation
Indices: 18454863--18455190 Score: 462
Period size: 88 Copynumber: 3.7 Consensus size: 88
18454853 TTTTGACAAC
* * * * * *
18454863 TGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGA
1 TGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA--TTCTTTCA
* * *
18454928 AAGACAGAA-ATTGAAAA-ACGAAAAT
64 AAAACATAATAATGAAAACA-G-AAAT
* * *
18454953 TGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCA
1 TGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTTTCA
18455018 AAAACATAATAATGAAAACAGAAAT
64 AAAACATAATAATGAAAACAGAAAT
*
18455043 TGAAAATACCTCGGCGTGACCTAAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTTTCAAA
1 TGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTTTCAAA
*
18455108 AACATAATAATGAAGACAGAAAT
66 AACATAATAATGAAAACAGAAAT
18455131 TGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
1 TGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
18455191 GACAAACAGA
Statistics
Matches: 218, Mismatches: 16, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
88 127 0.58
90 45 0.21
91 8 0.04
92 38 0.17
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (88 bp):
TGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTTTCAAA
AACATAATAATGAAAACAGAAAT
Found at i:18455242 original size:73 final size:72
Alignment explanation
Indices: 18455127--18455352 Score: 312
Period size: 72 Copynumber: 3.1 Consensus size: 72
18455117 ATGAAGACAG
* *
18455127 AAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTTG
1 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTG
* *
18455192 ACAAACAG
65 AAAAACAA
* * * **
18455200 AAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-A
1 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
18455264 AAACACAA
66 AAA-ACAA
* * *
18455272 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
18455337 AAAACAA
66 AAAACAA
18455344 AAATT-AAAA
1 AAATTGAAAA
18455353 GGCTTAACTC
Statistics
Matches: 135, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
71 7 0.05
72 70 0.52
73 58 0.43
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.24
Consensus pattern (72 bp):
AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AAAACAA
Found at i:18456026 original size:39 final size:40
Alignment explanation
Indices: 18455895--18456026 Score: 117
Period size: 39 Copynumber: 3.3 Consensus size: 40
18455885 ATAATTTGTA
* * *
18455895 ATAATA-ATATATACACAATATGGTATTTAAAATATATATAT
1 ATAATATATATATACACTA-ATGGTA-TTAAAAAATATATAC
* * * * *
18455936 ATATATATATATGTATA-TAATAGTATTTAAGAATATATAC
1 ATA-ATATATATATACACTAATGGTATTAAAAAATATATAC
* * *
18455976 ATAAGAAATATATA-ACTAATGGCATTAAAAAATATATAC
1 ATAATATATATATACACTAATGGTATTAAAAAATATATAC
18456015 ATAATATATATA
1 ATAATATATATA
18456027 AAATACCTAA
Statistics
Matches: 71, Mismatches: 17, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 1 0.01
39 37 0.52
40 14 0.20
41 8 0.11
42 4 0.06
43 7 0.10
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.37
Consensus pattern (40 bp):
ATAATATATATATACACTAATGGTATTAAAAAATATATAC
Found at i:18457419 original size:30 final size:30
Alignment explanation
Indices: 18457383--18457444 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
18457373 TTTTGAAAAA
18457383 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
18457413 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
18457443 CA
1 CA
18457445 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:18457765 original size:77 final size:79
Alignment explanation
Indices: 18457595--18458724 Score: 338
Period size: 77 Copynumber: 13.7 Consensus size: 79
18457585 ATGTGACCCG
* * *
18457595 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAA-ATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTG-AAAAATACCT
* * * **
18457659 CAGTGTGTGATCTGT
65 CAGCGCGTGAGCTCA
* *
18457674 A-GCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATT-AAAAATAGCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAAATACCTC
18457737 AGCGCGTGAGC-CA
66 AGCGCGTGAGCTCA
* **
18457750 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTG---AA---AAA
** * * * *
18457815 TTGAAAAT-ATCTCGGCATGTGAC-CTG
60 -T--ACCTCA--GC-GCGTGAG-CTC-A
* * * * * *
18457841 AAGCTCAACTCACCACTCACAATATGAGCTGATTTTTTTGAAAGACAGAAATTG-AAAATACCTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAAATACCTC
** * **
18457905 A--ATGT-ATCTTG
66 AGCGCGTGAGCTCA
* * * * *
18457916 AGGCTCAACTCACCTCTCGTAATATGAATTGA--TTTTTGAAA-CT-TAACTTGAAAAGCAGATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTG-AAA--A-A--
** * * *
18457977 TTGAAAAT-ACCTCGATATGTGACTCA
60 -T--ACCTCAGCGCG---TGAG-CTCA
* *
18458003 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATATAAATTGAAGTAAAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATT---G-----AAA
* * * *
18458066 AATACCTCAGTGTGTGATCTGA
58 AATACCTCAGCGCGTGAGCTCA
* *
18458088 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG-AAAATAGCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAAATACCTC
18458151 AGCGCGTGAGC-CA
66 AGCGCGTGAGCTCA
* **
18458164 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTG---AA---AAA
** ** * *
18458229 TTGAAAATACCTCGGCGTGTGAC-CTG
60 -T--ACCT-CAGC-GCGTGAG-CTC-A
* * * * *
18458255 AGGCTCAACTCGCTTCTCGCAATACGAGTTGATTTTTTTTGACA-ATAGAAATTG-AAATTACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGATAGAAATTGAAAAATACCT
**
18458318 CA--GCGTGTCCT-A
65 CAGCGCGTGAGCTCA
** **
18458330 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTTGAAAGGCAGAAATTGAAAAACGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGATAGAAATTG----A--AA
** ** * *
18458395 AATTGAAAATACCTCGGCGTGTGAC-CTG
58 AA-T--ACCT-CAGC-GCGTGAG-CTC-A
* * * * * *
18458423 AGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGACA-ACAGAAATTG-AAATTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAAATACCTC
**
18458486 A--GCGTGTCCT-A
66 AGCGCGTGAGCTCA
** *
18458497 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAAAAATTGAAAAACGGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGATAGAAATTG---AA---A
** ** * *
18458562 AATTGAAAATACCTCGGCGTGTGAC-CTT
58 AA-T--ACCT-CAGC-GCGTGAG-CTC-A
* ** * * *
18458590 AGGCTCAACTCGCCTCTCGCAATACAAGTTGATTTTTTTGACA-ACAGAAATTG-AAATTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAAATACCTC
** *
18458653 A--GCGTGTCCT-G
66 AGCGCGTGAGCTCA
**
18458664 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGATAGAAATTGAAAAA
18458725 ACGGAAATTG
Statistics
Matches: 790, Mismatches: 151, Indels: 221
0.68 0.13 0.19
Matches are distributed among these distances:
71 5 0.01
73 11 0.01
74 58 0.07
75 58 0.07
76 48 0.06
77 164 0.21
78 41 0.05
79 12 0.02
80 6 0.01
81 10 0.01
82 4 0.01
83 8 0.01
84 46 0.06
85 9 0.01
86 20 0.03
87 51 0.06
88 8 0.01
89 18 0.02
90 22 0.03
91 116 0.15
92 13 0.02
93 57 0.07
94 1 0.00
96 4 0.01
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.29
Consensus pattern (79 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAAATACCTC
AGCGCGTGAGCTCA
Found at i:18457924 original size:243 final size:239
Alignment explanation
Indices: 18457215--18458702 Score: 866
Period size: 243 Copynumber: 6.0 Consensus size: 239
18457205 AACAGATATT
*
18457215 AAAAACAGAAATTGAAAATAGCTTAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
** * * * *
18457280 TTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGAATGT
66 TTGATTTTTTGAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCTGAA-GC
* * *
18457344 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTAAAAGACTCAACTCAA
130 TCAACTCACCACTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTGAAA-A-T-ACCTCAA
* ** *
18457407 CTCTCGCAGAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAA
191 ---T-G--TATCTT---GAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG----A
*
18457470 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* *
18457535 TTGA-TTTTTGAAAACAG-AATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGG
66 TTGATTTTTTG-AAACAGAAAT-TGAAAAACAGATTTTGAAAATACCTCGACATGTGACCTGAAG
* * *
18457598 CTCAACTCA-CATCTCGCAATGTGAGTTGATTTTTTTGAAAATATAAATTGAAAAAATACCTCAG
129 CTCAACTCACCA-CTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTG--AAAATACCTCA-
* *
18457662 TGTGTGATC-TGTAGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTG-
190 -ATGT-ATCTTG-AGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
* * * *
18457713 AAAGATAGAAATTAAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * ** * *
18457778 TCGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATATCTCGGCATGTGACCTGAA
66 TTGA-TTTTTTGAAA--CAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCTGAA
* * *
18457843 GCTCAACTCACCACTCACAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTTAAT
128 GCTCAACTCACCACTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCAAT
* *
18457908 GTATCTTGAGGCTCAACTCACCTCTCGTAATATGAATTGATTTTTGAAACTT-A
192 GTATCTTGA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-----TTGA
** * * *
18457961 ACTTGAAAAGCAGATTTTGAAAATACCTC-GATATGTGA-CTCAAGGCTCAACTCACCTCTCGCA
1 A----AAAA-CAGAAATTGAAAATAGCTCAG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCA
* * **
18458024 ATATGAGTTGA-TTTTTGAAAAATATAAATTGAAGTAAA-A-A-----AAAATACCTC-AGTGTG
59 ATATGAGTTGATTTTTTG--AAACAGAAATTGAA--AAACAGATTTTGAAAATACCTCGA-CATG
* *
18458080 TGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAA
119 TGACCTGAAGCTCAACTCACCACTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAA
* ** * ** *
18458145 TAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGG
183 TACCTCA--ATGT-ATCTTGA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT------
18458209 CAGAAA
238 --G--A
* * * ** * * *
18458215 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCTTCTCGCAATA
1 ---AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
* * * ** * *
18458279 CGAGTTGATTTTTT----------TTG-ACAATAGAAATTGAAATTACCTC-AGC--GTGTCCT-
62 TGAGTTGATTTTTTGAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGA-CATGTGACCTG
* ** *
18458329 AAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTTGAAAGGCAGAAATTGAAAAACGA
126 AA-GCTCAACTCACCACTCGCAATATGAGTTGA--TTTTTTT--------G--A---AAACA-G-
** * * * *
18458394 AAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTT
173 AAATTGAAAATACCTC--AATGT-ATCTTGA-GCTCAACTCACCTCTCGCAATATGAGTTGATTT
18458458 TTTTG-
234 TTTTGA
* * * *
18458463 -ACAACAGAAATTGAAATTACCTCAG--CGTG-TCCTAAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
* * ** * *
18458524 GTTGATTTTTTTTTGAAAGGCAAAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCT
65 GTTGA---TTTTTTGAAA--CAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCT
* * * * ** * *
18458589 TAGGCTCAACTCGCCTCTCGCAATACAAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCA
125 GAAGCTCAACTCACCACTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCA
** * *
18458654 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
190 ATGTATCTTGA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
18458703 TTGAAAGGCA
Statistics
Matches: 992, Mismatches: 132, Indels: 232
0.73 0.10 0.17
Matches are distributed among these distances:
238 2 0.00
239 1 0.00
240 2 0.00
241 46 0.05
242 41 0.04
243 150 0.15
244 25 0.03
245 43 0.04
246 149 0.15
247 13 0.01
248 49 0.05
249 31 0.03
250 1 0.00
251 19 0.02
252 57 0.06
253 69 0.07
254 11 0.01
255 135 0.14
256 14 0.01
257 13 0.01
258 34 0.03
259 55 0.06
260 31 0.03
261 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (239 bp):
AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCTGAAGCT
CAACTCACCACTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAATGTAT
CTTGAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
Found at i:18458147 original size:414 final size:408
Alignment explanation
Indices: 18457471--18458535 Score: 1353
Period size: 414 Copynumber: 2.6 Consensus size: 408
18457461 TTTGAAAAAA
* * * *
18457471 AAAACAGAAATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCA--ACGT-ATCCTAAGGCTCAACTCACCTCTCGCAATATGAA
*
18457535 TTGATTTTTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCT
63 TTGATTTTTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCAAGGCT
*
18457600 CAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAATATAAATTGAAAAAATACCTCAGTGT
128 CAACTCACATCTCGCAATATGAGTTGA-TTTTTTGAAAATATAAATTGAAAAAATACCTCAGTGT
* * *
18457665 GTGATCTGTAGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTAAAA
192 GTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTAAAA
18457730 ATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGG
257 ATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGG
*
18457795 CAGAAATTGAAAAACGGAAATTGAAAATATCTCGGCATGTGACCTGAAGCTCAACTCACCACTCA
322 CAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCATGTGACCTGAAGCTCAACTCACCACTCA
*
18457860 CAATATGAGCTGA-TTTTTTTG
387 CAATACGAGCTGATTTTTTTTG
* * * * *
18457881 AAAGACAGAAATTGAAAATACCTTAATGTATCTTGAGGCTCAACTCACCTCTCGTAATATGAATT
1 AAA-ACAGAAATTGAAAATACCTCAACGTATCCTAAGGCTCAACTCACCTCTCGCAATATGAATT
** * * *
18457946 GATTTTTG-AAACTTAA-CTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGACTCAAGGCTC
65 GATTTTTGAAAACAGAATC-TGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCAAGGCTC
*
18458009 AACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTGAAGTAAAAAAAAATACCT
129 AACTCACATCTCGCAATATGAGTTGATTTTTTG-AAAATATAAATT---G----AAAAAATACCT
18458073 CAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
186 CAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
*
18458138 TTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTT
251 TTAAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTT
* * *
18458203 GAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGC
316 GAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCATGTGACCTGAAGCTCAACTCAC
** * *
18458268 TTCTCGCAATACGAGTTGATTTTTTTTG
381 CACTCACAATACGAGCTGATTTTTTTTG
* * * * *
18458296 ACAATAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCA
1 AAAACAGAAATTGAAAATACCTCAACGTATCCTAAGGCTCAACTCACCTCTCGCAATAT--G--A
** * ** * * **
18458361 ATTTTTTTTTGAAAGGCAGAAAT-TGAAAAAC-GAAAATTGAAAATACCTCGGCGTGTGACCTGA
62 ATTGATTTTTGAAA-ACAG-AATCTGAAAAACAG-ATTTTGAAAATACCTCGACATGTGACCCAA
* ** * * * * *
18458424 GGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTG--AAATTACCTCA
124 GGCTCAACTCACATCTCGCAATATGAGTTGA-TTTTTTGAAAATATAAATTGAAAAAATACCTCA
* *
18458487 GCGTGT--CCT-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
188 GTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
18458536 TTGAAAGGCA
Statistics
Matches: 568, Mismatches: 63, Indels: 48
0.84 0.09 0.07
Matches are distributed among these distances:
406 6 0.01
407 13 0.02
408 73 0.13
409 40 0.07
410 43 0.08
411 19 0.03
412 15 0.03
414 259 0.46
415 10 0.02
416 1 0.00
418 11 0.02
419 3 0.01
420 58 0.10
421 11 0.02
422 6 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (408 bp):
AAAACAGAAATTGAAAATACCTCAACGTATCCTAAGGCTCAACTCACCTCTCGCAATATGAATTG
ATTTTTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCAAGGCTCAA
CTCACATCTCGCAATATGAGTTGATTTTTTGAAAATATAAATTGAAAAAATACCTCAGTGTGTGA
TCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTAAAAATAG
CTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGA
AATTGAAAAACGGAAATTGAAAATACCTCGGCATGTGACCTGAAGCTCAACTCACCACTCACAAT
ACGAGCTGATTTTTTTTG
Found at i:18458289 original size:91 final size:91
Alignment explanation
Indices: 18458124--18458293 Score: 234
Period size: 91 Copynumber: 1.9 Consensus size: 91
18458114 GTTGATTTTT
* * *
18458124 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAC
18458189 GAGTCGATTTTTTTGAAAGGCAGAAA
66 GAGTCGATTTTTTTGAAAGGCAGAAA
* * * * * *
18458215 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCTTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
*
18458279 CGAGTTGATTTTTTT
65 CGAGTCGATTTTTTT
18458294 TGACAATAGA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
90 2 0.03
91 66 0.97
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (91 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAC
GAGTCGATTTTTTTGAAAGGCAGAAA
Found at i:18458459 original size:91 final size:89
Alignment explanation
Indices: 18458303--18458478 Score: 221
Period size: 91 Copynumber: 1.9 Consensus size: 89
18458293 TTGACAATAG
* * *
18458303 AAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCGCTCGCAATACGAGTCAA-TTTTT
18458368 TTTGA-AAGGCAGAAATTGAAAAACGA
65 TTTGACAA--CAGAAATTGAAAAACGA
* * * **
18458394 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGA-TTT
1 AAATTGAAAATACCTCAGCGTGT--CCTAAGGCTCAACTCACCGCTCGCAATACGAGTCAATTTT
18458458 TTTTGACAACAGAAATTGAAA
64 TTTTGACAACAGAAATTGAAA
18458479 TTACCTCAGC
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
90 12 0.16
91 30 0.41
92 2 0.03
93 30 0.41
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCGCTCGCAATACGAGTCAATTTTTT
TTGACAACAGAAATTGAAAAACGA
Found at i:18458493 original size:167 final size:167
Alignment explanation
Indices: 18458002--18458870 Score: 1341
Period size: 168 Copynumber: 5.2 Consensus size: 167
18457992 TATGTGACTC
*** * *
18458002 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTGAAAAATATAAATTGAAGTAA--
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAA-AAACG
* * * * * *
18458061 -AAA---AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTT
65 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
* * * *
18458122 TTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-
130 TTTTGACA-ACAGAAATTGAAATTACCTCA--GCGTG-TCCT
*
18458163 AAGGCTCAACTCACCTCTCGCAATATGAGTCGA--TTTTTTTGAAAGGCAGAAATTGAAAAACGG
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGG
*
18458226 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCTTCTCGCAATACGAGTTGATTTT
66 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TTT
*
18458291 TTTTGACAATAGAAATTGAAATTACCTCAGCGTGTCCT
130 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCT
** *
18458329 AAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTTGAAAGGCAGAAATTGAAAAACGA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGG
*
18458394 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTT
66 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
18458459 TTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCT
131 TTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCT
*
18458496 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAAAAATTGAAAAACGG
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGG
* *
18458561 AAATTGAAAATACCTCGGCGTGTGACCTTAGGCTCAACTCGCCTCTCGCAATACAAGTTGATTTT
66 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
18458626 TTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCT
131 TTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCT
*
18458663 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAAACG
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTG-AAAAACG
18458728 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
65 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
*
18458793 TTTTGACAACAGAAATTGAAATTACCTCAGTGTGTCCT
130 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCT
18458831 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
18458871 GAAAATACCT
Statistics
Matches: 659, Mismatches: 36, Indels: 19
0.92 0.05 0.03
Matches are distributed among these distances:
161 32 0.05
162 2 0.00
163 18 0.03
165 5 0.01
166 37 0.06
167 255 0.39
168 300 0.46
169 10 0.02
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (167 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGG
AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
TTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCT
Found at i:18458539 original size:76 final size:75
Alignment explanation
Indices: 18458394--18458535 Score: 214
Period size: 74 Copynumber: 1.9 Consensus size: 75
18458384 TGAAAAACGA
* * *
18458394 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT-ACCTAAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTT
18458459 TTTGACAACAG
65 TTTGACAACAG
* * *
18458470 AAATTGAAATTACCTCAGCGTGT-CCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTT
18458534 TT
66 TT
18458536 TTGAAAGGCA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
74 39 0.65
76 21 0.35
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (75 bp):
AAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTT
TTGACAACAG
Found at i:18458555 original size:335 final size:335
Alignment explanation
Indices: 18458064--18458870 Score: 1343
Period size: 335 Copynumber: 2.4 Consensus size: 335
18458054 GAAGTAAAAA
* * * * * * *
18458064 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* * *
18458129 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
66 A-ACAGAAATTGAAATTACCTCA--GCGTG-TCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
* *
18458193 CGA--TTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGA
127 TGATTTTTTTTTGAAAGGCAAAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGA
* * *
18458256 GGCTCAACTCGCTTCTCGCAATACGAGTTGATTTTTTTTGACAATAGAAATTGAAATTACCTCAG
192 GGCTCAACTCGCCTCTCGCAATACAAGTTGA-TTTTTTTGACAACAGAAATTGAAATTACCTCAG
18458321 CGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTTGAAAGGCAGAAATTG
256 CGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTTGAAAGGCAGAAATTG
18458386 -AAAAACGAAAATTG
321 AAAAAACGAAAATTG
*
18458400 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
18458465 AACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
18458530 TTTTTTTTGAAAGGCAAAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTTAGGCT
131 TTTTTTTTGAAAGGCAAAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCT
18458595 CAACTCGCCTCTCGCAATACAAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGT
196 CAACTCGCCTCTCGCAATACAAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGT
* **
18458660 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAA
261 CCTAAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTTGAAAGGCAGAAATTGAAAAA
*
18458725 ACGGAAATTG
326 ACGAAAATTG
18458735 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
*
18458800 AACAGAAATTGAAATTACCTCAGTGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
18458865 TTTTTT
131 TTTTTT
18458871 GAAAATACCT
Statistics
Matches: 444, Mismatches: 23, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
332 2 0.00
333 37 0.08
334 94 0.21
335 253 0.57
336 58 0.13
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (335 bp):
AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
AACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTTTGAAAGGCAAAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCT
CAACTCGCCTCTCGCAATACAAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGT
CCTAAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTTGAAAGGCAGAAATTGAAAAA
ACGAAAATTG
Found at i:18458686 original size:74 final size:75
Alignment explanation
Indices: 18458560--18458702 Score: 216
Period size: 74 Copynumber: 1.9 Consensus size: 75
18458550 TTGAAAAACG
* * *
18458560 GAAATTGAAAATACCTCGGCGTGTGACCTTAGGCTCAACTCGCCTCTCGCAATACAAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTT
18458625 TTTTGACAACA
65 TTTTGACAACA
* **
18458636 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTT
18458700 TTT
66 TTT
18458703 TTGAAAGGCA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
74 39 0.64
76 22 0.36
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTT
TTTGACAACA
Found at i:18458702 original size:76 final size:75
Alignment explanation
Indices: 18458560--18458723 Score: 215
Period size: 74 Copynumber: 2.1 Consensus size: 75
18458550 TTGAAAAACG
* * *
18458560 GAAATTGAAAATACCTCGGCGTGTGACCTTAGGCTCAACTCGCCTCTCGCAATACAAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTT
18458625 TTTTGACAA-CA
65 TTTTGA-AAGCA
* **
18458636 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGA--TT
18458700 TTTTTGAAAGGCA
64 TTTTTGAAA-GCA
18458713 GAAATTGAAAA
1 GAAATTGAAAA
18458724 AACGGAAATT
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
74 32 0.42
75 2 0.03
76 31 0.40
77 12 0.16
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTT
TTTGAAAGCA
Found at i:18458851 original size:74 final size:75
Alignment explanation
Indices: 18458728--18458872 Score: 220
Period size: 74 Copynumber: 1.9 Consensus size: 75
18458718 TGAAAAAACG
* * *
18458728 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTC-GAGTGTGACCTAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
18458793 TTTTGACAACA
65 TTTTGACAACA
* * *
18458804 GAAATTGAAATTACCTC-AGTGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCGAGTGTGACCTAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
18458868 TTTGA
66 TTTGA
18458873 AAATACCTCA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 47 0.75
76 16 0.25
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGAGTGTGACCTAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:18458903 original size:61 final size:61
Alignment explanation
Indices: 18458808--18458929 Score: 199
Period size: 61 Copynumber: 2.0 Consensus size: 61
18458798 ACAACAGAAA
* * * *
18458808 TTGAAATTACCTCAGTGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TTGAAAATACCTCAGCGCGTCCTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
*
18458869 TTGAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
1 TTGAAAATACCTCAGCGCGTCCTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
18458930 GAAACATACG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (61 bp):
TTGAAAATACCTCAGCGCGTCCTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
Found at i:18458978 original size:137 final size:136
Alignment explanation
Indices: 18458732--18459005 Score: 363
Period size: 137 Copynumber: 2.0 Consensus size: 136
18458722 AAAACGGAAA
* * * * **
18458732 TTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCGCGT-ACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTTGA
* * * * *
18458797 GACAACAGAAATTGAAATTACCTCAGTGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTT
65 AACAACAAAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAATT
*
18458862 GATTTTT
130 GACTTTT
*
18458869 TTGAAAATACCTCAGCGCGT-CCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAA
1 TTGAAAATACCTCAGCGCGTACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTTGAA
* *
18458933 ACATACGAAAAATTGACAA-TGCCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAA
66 ACA-AC-AAAAATTGA-AATTACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAA
18458997 TTGACTTTT
128 TTGACTTTT
18459006 GAAATAAAAC
Statistics
Matches: 119, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
135 41 0.34
136 2 0.02
137 74 0.62
138 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (136 bp):
TTGAAAATACCTCAGCGCGTACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTTGAA
ACAACAAAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAATTG
ACTTTT
Found at i:18459006 original size:76 final size:76
Alignment explanation
Indices: 18458869--18459009 Score: 221
Period size: 76 Copynumber: 1.9 Consensus size: 76
18458859 GTTGATTTTT
* *
18458869 TTGAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCGCGTCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGACTTTTGAAA
18458934 CATACGAAAAA
66 CATACGAAAAA
* * *
18458945 TTGACAATGCCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAA-TTGACTTTTGAA
1 TTGAAAATACCTCAGCGCGTCCCGAGGCTCAACTCACCTCTCGCAATAT-AAGTTGACTTTTGAA
18459009 A
65 A
18459010 TAAAACATCA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
76 57 0.97
77 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (76 bp):
TTGAAAATACCTCAGCGCGTCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGACTTTTGAAA
CATACGAAAAA
Found at i:18469248 original size:2 final size:2
Alignment explanation
Indices: 18469197--18469229 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
18469187 ATGGTATTTA
18469197 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
18469230 ATAGTATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18470621 original size:18 final size:19
Alignment explanation
Indices: 18470594--18470639 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
18470584 ATGAAGAAAT
*
18470594 AATAATAATAAAT-AGAT-A
1 AATAAAAATAAATAAG-TGA
18470612 AATAAAAATAAATAAGTGA
1 AATAAAAATAAATAAGTGA
18470631 AATAAAAAT
1 AATAAAAAT
18470640 GAGAGAGTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.24
Consensus pattern (19 bp):
AATAAAAATAAATAAGTGA
Found at i:18473903 original size:9 final size:9
Alignment explanation
Indices: 18473886--18473925 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
18473876 CCGAAATAAC
18473886 ATTAACCGA
1 ATTAACCGA
*
18473895 ATTACCCGA
1 ATTAACCGA
18473904 ATT-ACCTGA
1 ATTAACC-GA
18473913 ATTAACCGA
1 ATTAACCGA
18473922 ATTA
1 ATTA
18473926 TTTGTATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 2 0.07
9 22 0.81
10 3 0.11
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.28
Consensus pattern (9 bp):
ATTAACCGA
Found at i:18473961 original size:5 final size:6
Alignment explanation
Indices: 18473946--18473992 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
18473936 ATTATATGTT
*
18473946 TTTTTA TTTTTA TTTTTA TTTTTA GTTTTAAA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
18473993 ATTAAATTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 28 0.76
7 8 0.22
8 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:18473982 original size:21 final size:21
Alignment explanation
Indices: 18473957--18474000 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
18473947 TTTTATTTTT
18473957 ATTTTTATTTTTAGTT-TTAA
1 ATTTTTATTTTTAGTTATTAA
*
18473977 ATTTTTATTTTTATTTATTAA
1 ATTTTTATTTTTAGTTATTAA
18473998 ATT
1 ATT
18474001 ATTTGTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (21 bp):
ATTTTTATTTTTAGTTATTAA
Found at i:18478497 original size:21 final size:22
Alignment explanation
Indices: 18478471--18478512 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
18478461 AGATTGAACA
18478471 TATATC-AATAAATCTTTAATT
1 TATATCTAATAAATCTTTAATT
*
18478492 TATATCTTAATAACTCTTTAA
1 TATATC-TAATAAATCTTTAA
18478513 CATAGATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
23 12 0.67
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (22 bp):
TATATCTAATAAATCTTTAATT
Found at i:18480851 original size:16 final size:17
Alignment explanation
Indices: 18480819--18480851 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
18480809 ATGCAGGATT
*
18480819 TTTAAAATTTTTTATTA
1 TTTAAAATTTATTATTA
18480836 TTTAAAA-TTATTATTA
1 TTTAAAATTTATTATTA
18480852 ATGTCAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTAAAATTTATTATTA
Found at i:18481017 original size:2 final size:2
Alignment explanation
Indices: 18481005--18481046 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
18480995 TCTTTCATGT
18481005 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18481046 T
1 T
18481047 GATTTCTCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18487532 original size:161 final size:155
Alignment explanation
Indices: 18487072--18487811 Score: 610
Period size: 155 Copynumber: 4.6 Consensus size: 155
18487062 TTATAATTTG
* * * * * *
18487072 TTTCAAGATGATGTCCATTCT-AACTATGGCCAACATAAAATTTACTTTAA-ATCACCCATTTAC
1 TTTCAAGATCATATCCATTCTAAAC-ATGTCCAACATGAAATTTAC-TTAATATCACCCACTGAC
* * *
18487135 CTTAAAACTTCCA-CTTCTTTATAAGTAACCACAAAATTAGATATCGTCAGGTTACCAAAATAAC
64 CTTAAAAC-T-CATCTTCTTTATAAGTAACCACAAAA--AGGTATCATCAGGTTACCAAAATGAC
* *
18487199 TGACATTTGACGATAACCAAAGT-AGACTCGT
125 TGACATTTGACAATAACCAAAGTAAG-CTCAT
* ** *
18487230 TTTCAAGATCATATCCGTAGTAAACATGTCCAACATGAAATTTACTTAAATATCACCCGCTGACC
1 TTTCAAGATCATATCCATTCTAAACATGTCCAACATGAAATTTACTT-AATATCACCCACTGACC
* *
18487295 TTAAAA--C-TCTTCTTTATAAGTAACCACAAATCCAGGTATCATCTGGTTACTC-AAATGACTG
65 TTAAAACTCATCTTCTTTATAAGTAACCACAAA--AAGGTATCATCAGGTTAC-CAAAATGACTG
*
18487356 ACATTTGACAATAACCAAAGTAAGCCCAT
127 ACATTTGACAATAACCAAAGTAAGCTCAT
* * *
18487385 TTTCAAGATCATATCCATTCTAATCATGTCCAACATGAAATTTACTTCATATTACCCACTGACCT
1 TTTCAAGATCATATCCATTCTAAACATGTCCAACATGAAATTTACTTAATATCACCCACTGACCT
** *
18487450 TAAAACTCTAGTTTCTTCTTTATAAGTAATTACAAAAAGGGTTATCATCCGGTTACCAAAATGAC
66 TAAAACTC-A---TCTTCTTTATAAGTAACCACAAAAA-GG-TATCATCAGGTTACCAAAATGAC
* *
18487515 TGACATTTAACAATAACCAAATTAAGCTCAT
125 TGACATTTGACAATAACCAAAGTAAGCTCAT
* *
18487546 TTTCAAGAT-AAATTCCATTCTAAACATGTCCAACATGAATTATACATTTTTACTTTATAATCAC
1 TTTCAAGATCATA-TCCATTCTAAACATGTCCAACATG----A-A-A--TTTACTTAAT-ATCAC
* * * * ** * ***
18487610 CCAATGACATTAAAACTTTCA-CTTCTTTGTAAGTGACCACAAAATCAAATATCACCCTATTACT
56 CCACTGACCTTAAAAC--TCATCTTCTTTATAAGTAACCACAAAA--AGGTATCATCAGGTTAC-
* * * *
18487674 AAAAATGACTGACATTTTAGACAATAACCAGAGCAGAACTCAT
116 CAAAATGACTGACA-TTT-GACAATAACCAAAGTA-AGCTCAT
* * ** * *
18487717 TTTCAAGATAAAATCCATTCTAGCCATGTCCAACATGAAATTTAGTTCATATCACCCAC--A--T
1 TTTCAAGATCATATCCATTCTAAACATGTCCAACATGAAATTTACTTAATATCACCCACTGACCT
18487778 TAAAACTCCCA-CTTCTTTATAAGTAACCACAAAA
66 TAAAACT--CATCTTCTTTATAAGTAACCACAAAA
18487812 TGGGATATCA
Statistics
Matches: 483, Mismatches: 60, Indels: 78
0.78 0.10 0.13
Matches are distributed among these distances:
154 20 0.04
155 111 0.23
156 5 0.01
157 2 0.00
158 66 0.14
159 21 0.04
160 6 0.01
161 101 0.21
162 8 0.02
163 8 0.02
165 2 0.00
166 2 0.00
167 32 0.07
168 13 0.03
169 13 0.03
170 30 0.06
171 38 0.08
172 5 0.01
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (155 bp):
TTTCAAGATCATATCCATTCTAAACATGTCCAACATGAAATTTACTTAATATCACCCACTGACCT
TAAAACTCATCTTCTTTATAAGTAACCACAAAAAGGTATCATCAGGTTACCAAAATGACTGACAT
TTGACAATAACCAAAGTAAGCTCAT
Found at i:18491686 original size:2 final size:2
Alignment explanation
Indices: 18491676--18491706 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
18491666 AAACAACAGA
18491676 AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT
18491707 TTACAACCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18493961 original size:19 final size:18
Alignment explanation
Indices: 18493930--18493974 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
18493920 TTTTTATTTT
* *
18493930 TAAAAAATTAAATTTAAA
1 TAAAAATTTAAATTCAAA
18493948 TAAAAATTTAAAATTCAAA
1 TAAAAATTT-AAATTCAAA
*
18493967 TTAAAATT
1 TAAAAATT
18493975 ATTAGTATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
TAAAAATTTAAATTCAAA
Found at i:18496717 original size:40 final size:40
Alignment explanation
Indices: 18496650--18496779 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
18496640 AAAAATATTG
* **
18496650 TGAATTGCACATACGTGGCCCTGTTTGTATTTGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTATTAAGTACCCC
* *
18496690 TGAATTGCACATACATGCCCCTATTTGTATTAAGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTATTAAGTACCCC
* * *
18496730 TAAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACTCC
1 TGAATTGCACATACGTGCCCCTGTTTGTA-TTAAGTACCCC
18496771 TGAA-TGCAC
1 TGAATTGCAC
18496780 TTTCTTGCCC
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 66 0.85
41 12 0.15
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (40 bp):
TGAATTGCACATACGTGCCCCTGTTTGTATTAAGTACCCC
Found at i:18503149 original size:114 final size:115
Alignment explanation
Indices: 18502997--18503238 Score: 335
Period size: 114 Copynumber: 2.1 Consensus size: 115
18502987 TGGACATGTA
* * *
18502997 ATGGTCAGCACCATAGTCATTTTAAAAAAAAAATTTGGGTGTTGACCAATAGATGGCTGGCACCA
1 ATGGCCAGCACCATAGTCATTTTAAAAAAAAAATTTGGGTGCTGACCAATAGATGGCCGGCACCA
* * *
18503062 AATACATTTTTTGGGTCCCAAGACATTTTTTTTTTTATTTTGGGCCACTG
66 AATACATTTTTTGGGTCCCAAGACACTTTTTTTTTTACTTTGGGACACTG
* ** * * *
18503112 ATGGCCGGCACCAGT-GTCA-TTTAAAAAAAATTTTTGGGTGCTGGCCAGTAGATGGCCGGCATC
1 ATGGCCAGCACCA-TAGTCATTTTAAAAAAAAAATTTGGGTGCTGACCAATAGATGGCCGGCACC
* *
18503175 AAGTACATTTTTTGGGTCCTAAGACACTTTTTTTTTTACTTTGGGACACTG
65 AAATACATTTTTTGGGTCCCAAGACACTTTTTTTTTTACTTTGGGACACTG
18503226 ATGGCCAGCACCA
1 ATGGCCAGCACCA
18503239 CTTTTTCAAG
Statistics
Matches: 111, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
114 95 0.86
115 15 0.14
116 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (115 bp):
ATGGCCAGCACCATAGTCATTTTAAAAAAAAAATTTGGGTGCTGACCAATAGATGGCCGGCACCA
AATACATTTTTTGGGTCCCAAGACACTTTTTTTTTTACTTTGGGACACTG
Found at i:18503457 original size:28 final size:28
Alignment explanation
Indices: 18503420--18503502 Score: 89
Period size: 27 Copynumber: 3.0 Consensus size: 28
18503410 TTGAGAGAGC
* *
18503420 CATCAAAATGAGAGTGTTTTATAGTGTAT
1 CATC-AAATGAGAGTTTTTTGTAGTGTAT
** *
18503449 CATCAAATGAGTTTTTTTTGTAGTGGAT
1 CATCAAATGAGAGTTTTTTGTAGTGTAT
18503477 --TGCAAATGAGAGTTTTTTGTAGTGTA
1 CAT-CAAATGAGAGTTTTTTGTAGTGTA
18503503 CAACCAAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
26 1 0.02
27 21 0.47
28 19 0.42
29 4 0.09
ACGTcount: A:0.29, C:0.06, G:0.23, T:0.42
Consensus pattern (28 bp):
CATCAAATGAGAGTTTTTTGTAGTGTAT
Found at i:18503510 original size:28 final size:27
Alignment explanation
Indices: 18503425--18503511 Score: 75
Period size: 28 Copynumber: 3.1 Consensus size: 27
18503415 AGAGCCATCA
* * *
18503425 AAATGAGAGTGTTTTATAGTGTATCATC
1 AAATGAGAGTTTTTTGTAGTGTA-CACC
** * ***
18503453 AAATGAGTTTTTTTTGTAGTGGATTGC
1 AAATGAGAGTTTTTTGTAGTGTACACC
18503480 AAATGAGAGTTTTTTGTAGTGTACAACC
1 AAATGAGAGTTTTTTGTAGTGTAC-ACC
18503508 AAAT
1 AAAT
18503512 TTCGGGGTTG
Statistics
Matches: 44, Mismatches: 14, Indels: 2
0.73 0.23 0.03
Matches are distributed among these distances:
27 21 0.48
28 23 0.52
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (27 bp):
AAATGAGAGTTTTTTGTAGTGTACACC
Found at i:18503944 original size:89 final size:89
Alignment explanation
Indices: 18503851--18504280 Score: 471
Period size: 90 Copynumber: 4.8 Consensus size: 89
18503841 TCATTTTTAT
* * * **
18503851 ATTTTCGTGTATTAATTTCTTA-GA-ATGTTTGTATTTTTTTGTAT-TTGTAAATTTAATTTAGT
1 ATTTTCGTGTATTAA-TT-TTACCATATGTTTGTAGTTTGTTGGGTGTT-TAAATTTAATTTAGT
*
18503913 CCGCATTATATGTAGTTTAAATTTAAA
63 CCGTATTATATGTAGTTTAAATTTAAA
* * * *
18503940 ATTTTCGTGTATTAATTTTACCCATCTATTTGTAGTTTGTTGGGTGTTTAAATTTAATTTAATCT
1 ATTTTCGTGTATTAATTTTA-CCATATGTTTGTAGTTTGTTGGGTGTTTAAATTTAATTTAGTCC
*
18504005 ATATTATATAG-AGTTTGAAA-TTAAA
65 GTATTATAT-GTAGTTT-AAATTTAAA
** * **
18504030 ATTTTCGTACATTAATTTTACCCATCTGTTTGTAGTTTGTTGGGTGTTTAAATTTAATTT-GTTT
1 ATTTTCGTGTATTAATTTTA-CCATATGTTTGTAGTTTGTTGGGTGTTTAAATTTAATTTAGTCC
18504094 GTATTATATAG-AGTTTGAAA-TTAAA
65 GTATTATAT-GTAGTTT-AAATTTAAA
* * * * *
18504119 ATTTTCGTGCATTAATTTTACGCATCTATTTATAGTTTGTTAGGTGTTTAAATTTAATTTAGTCC
1 ATTTTCGTGTATTAATTTTAC-CATATGTTTGTAGTTTGTTGGGTGTTTAAATTTAATTTAGTCC
*
18504184 GTATTATATGTAGTTTGAATTTAAA
65 GTATTATATGTAGTTTAAATTTAAA
* * * *
18504209 ATTTTTGTGTATTAATTTTACCCATCTATTTGTAGTTTGTTGGGTGTTTAAATTTATTTTAGTCC
1 ATTTTCGTGTATTAATTTTA-CCATATGTTTGTAGTTTGTTGGGTGTTTAAATTTAATTTAGTCC
18504274 GTATTAT
65 GTATTAT
18504281 TTTTGTTTGA
Statistics
Matches: 301, Mismatches: 29, Indels: 21
0.86 0.08 0.06
Matches are distributed among these distances:
87 3 0.01
88 3 0.01
89 99 0.33
90 189 0.63
91 7 0.02
ACGTcount: A:0.27, C:0.07, G:0.14, T:0.52
Consensus pattern (89 bp):
ATTTTCGTGTATTAATTTTACCATATGTTTGTAGTTTGTTGGGTGTTTAAATTTAATTTAGTCCG
TATTATATGTAGTTTAAATTTAAA
Found at i:18503992 original size:90 final size:90
Alignment explanation
Indices: 18503898--18504280 Score: 567
Period size: 90 Copynumber: 4.3 Consensus size: 90
18503888 TTTGTATTTG
* *
18503898 TAAATTTAATTTAGTCCGCATTATAT-GTAGTTT-AAATTTAAAATTTTCGTGTATTAATTTTAC
1 TAAATTTAATTTAGTCCGTATTATATAG-AGTTTGAAA-TTAAAATTTTCGTGCATTAATTTTAC
18503961 CCATCTATTTGTAGTTTGTTGGGTGTT
64 CCATCTATTTGTAGTTTGTTGGGTGTT
* ** *
18503988 TAAATTTAATTTAATCTATATTATATAGAGTTTGAAATTAAAATTTTCGTACATTAATTTTACCC
1 TAAATTTAATTTAGTCCGTATTATATAGAGTTTGAAATTAAAATTTTCGTGCATTAATTTTACCC
*
18504053 ATCTGTTTGTAGTTTGTTGGGTGTT
66 ATCTATTTGTAGTTTGTTGGGTGTT
** *
18504078 TAAATTTAATTT-GTTTGTATTATATAGAGTTTGAAATTAAAATTTTCGTGCATTAATTTTACGC
1 TAAATTTAATTTAGTCCGTATTATATAGAGTTTGAAATTAAAATTTTCGTGCATTAATTTTACCC
* *
18504142 ATCTATTTATAGTTTGTTAGGTGTT
66 ATCTATTTGTAGTTTGTTGGGTGTT
* * *
18504167 TAAATTTAATTTAGTCCGTATTATAT-GTAGTTTGAATTTAAAATTTTTGTGTATTAATTTTACC
1 TAAATTTAATTTAGTCCGTATTATATAG-AGTTTGAAATTAAAATTTTCGTGCATTAATTTTACC
18504231 CATCTATTTGTAGTTTGTTGGGTGTT
65 CATCTATTTGTAGTTTGTTGGGTGTT
*
18504257 TAAATTTATTTTAGTCCGTATTAT
1 TAAATTTAATTTAGTCCGTATTAT
18504281 TTTTGTTTGA
Statistics
Matches: 265, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
89 82 0.31
90 179 0.68
91 4 0.02
ACGTcount: A:0.28, C:0.07, G:0.14, T:0.51
Consensus pattern (90 bp):
TAAATTTAATTTAGTCCGTATTATATAGAGTTTGAAATTAAAATTTTCGTGCATTAATTTTACCC
ATCTATTTGTAGTTTGTTGGGTGTT
Found at i:18504291 original size:179 final size:181
Alignment explanation
Indices: 18503898--18504280 Score: 567
Period size: 179 Copynumber: 2.1 Consensus size: 181
18503888 TTTGTATTTG
* * *
18503898 TAAATTTAATTTAGTCCGCATTATATGTAGTTT-AAATTTAAAATTTTCGTGTATTAATTTTACC
1 TAAATTTAATTTAGTCCGTATTATATATAGTTTGAAATTTAAAATTTTCGTGCATTAATTTTACC
* * *
18503962 CATCTATTTGTAGTTTGTTGGGTGTTTAAATTTAATTTAATCTATATTATATAGAGTTTGAAATT
66 CATCTATTTATAGTTTGTTAGGTGTTTAAATTTAATTTAATCCATATTATATAGAGTTTGAAATT
*
18504027 AAAATTTTCGTACATTAATTTTACCCATCTGTTTGTAGTTTGTTGGGTGTT
131 AAAATTTTCGTACATTAATTTTACCCATCTATTTGTAGTTTGTTGGGTGTT
** * *
18504078 TAAATTTAATTT-GTTTGTATTATATAGAGTTTGAAA-TTAAAATTTTCGTGCATTAATTTTACG
1 TAAATTTAATTTAGTCCGTATTATATATAGTTTGAAATTTAAAATTTTCGTGCATTAATTTTACC
* * *
18504141 CATCTATTTATAGTTTGTTAGGTGTTTAAATTTAATTTAGTCCGTATTATAT-GTAGTTTGAATT
66 CATCTATTTATAGTTTGTTAGGTGTTTAAATTTAATTTAATCCATATTATATAG-AGTTTGAAAT
* **
18504205 TAAAATTTTTGTGTATTAATTTTACCCATCTATTTGTAGTTTGTTGGGTGTT
130 TAAAATTTTCGTACATTAATTTTACCCATCTATTTGTAGTTTGTTGGGTGTT
*
18504257 TAAATTTATTTTAGTCCGTATTAT
1 TAAATTTAATTTAGTCCGTATTAT
18504281 TTTTGTTTGA
Statistics
Matches: 180, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
178 1 0.01
179 155 0.86
180 24 0.13
ACGTcount: A:0.28, C:0.07, G:0.14, T:0.51
Consensus pattern (181 bp):
TAAATTTAATTTAGTCCGTATTATATATAGTTTGAAATTTAAAATTTTCGTGCATTAATTTTACC
CATCTATTTATAGTTTGTTAGGTGTTTAAATTTAATTTAATCCATATTATATAGAGTTTGAAATT
AAAATTTTCGTACATTAATTTTACCCATCTATTTGTAGTTTGTTGGGTGTT
Found at i:18505894 original size:20 final size:21
Alignment explanation
Indices: 18505871--18505915 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
18505861 TCTCATTTGA
18505871 TTTCATCTAAATTTATTTC-T
1 TTTCATCTAAATTTATTTCAT
*
18505891 TTTCATTTAAATTTATTTCAT
1 TTTCATCTAAATTTATTTCAT
18505912 TTTC
1 TTTC
18505916 CATTTTAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTCATCTAAATTTATTTCAT
Found at i:18505998 original size:60 final size:58
Alignment explanation
Indices: 18505891--18506007 Score: 130
Period size: 60 Copynumber: 1.9 Consensus size: 58
18505881 ATTTATTTCT
* * *
18505891 TTTCATTTAAATTTATTTCATTTTCCATTTTAACTTACGTTTTTTTCATATTAATTTTTG
1 TTTCATTGAAATTTATTTCATTTT-CATTCTAACTTAC-TTTTTTTCACATTAATTTTTG
*
18505951 TTTCATTGAAATTTATTTCATTTT-ATTCTATACTTTA-TTTTCATTTCACATTCATTT
1 TTTCATTGAAATTTATTTCATTTTCATTCTA-AC-TTACTTTT--TTTCACATTAATTT
18506008 AATATTTCAT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
58 9 0.18
59 2 0.04
60 38 0.78
ACGTcount: A:0.24, C:0.13, G:0.03, T:0.61
Consensus pattern (58 bp):
TTTCATTGAAATTTATTTCATTTTCATTCTAACTTACTTTTTTTCACATTAATTTTTG
Found at i:18506134 original size:36 final size:36
Alignment explanation
Indices: 18506083--18506164 Score: 110
Period size: 36 Copynumber: 2.2 Consensus size: 36
18506073 GCAGGCTTCA
* * *
18506083 GCTTGGTGCCAGCCAATGTAAGGCCATTTGTGGCAG
1 GCTTGGTGCCAGCCAATGTAAGACCATCTCTGGCAG
* *
18506119 GCTTGGTGTCGGCCAATGTAAGACCATCTCTGGCAG
1 GCTTGGTGCCAGCCAATGTAAGACCATCTCTGGCAG
18506155 GCCTTGGTGC
1 G-CTTGGTGC
18506165 TGGCCATTCA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
36 32 0.82
37 7 0.18
ACGTcount: A:0.17, C:0.24, G:0.33, T:0.26
Consensus pattern (36 bp):
GCTTGGTGCCAGCCAATGTAAGACCATCTCTGGCAG
Found at i:18506368 original size:44 final size:44
Alignment explanation
Indices: 18506317--18506507 Score: 346
Period size: 44 Copynumber: 4.3 Consensus size: 44
18506307 GAATTAATAT
18506317 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
1 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
*
18506361 ATATAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
1 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
18506405 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
1 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
* * *
18506449 ATTTAATGTGTTTTAAATTAAATATGCATGTATATTGTATTGTA
1 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
18506493 ATTTAATGTGTTTTA
1 ATTTAATGTGTTTTA
18506508 GATTAGGAAT
Statistics
Matches: 142, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 142 1.00
ACGTcount: A:0.37, C:0.01, G:0.12, T:0.50
Consensus pattern (44 bp):
ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
Found at i:18508891 original size:43 final size:43
Alignment explanation
Indices: 18508811--18508900 Score: 126
Period size: 43 Copynumber: 2.1 Consensus size: 43
18508801 TGGTCCGCAC
* * * * *
18508811 GGGCTTGTGCCTCAGTCACACGGCTGTGTGCCTCTCTTCATAT
1 GGGCATGTGCCTCAGTCACACGGCCGTGTACCCCTCTTCACAT
*
18508854 GGGCATGTGCCTCAGTCACATGGCCGTGTACCCCTCTTCACAT
1 GGGCATGTGCCTCAGTCACACGGCCGTGTACCCCTCTTCACAT
18508897 GGGC
1 GGGC
18508901 CTTTGACGTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.13, C:0.32, G:0.27, T:0.28
Consensus pattern (43 bp):
GGGCATGTGCCTCAGTCACACGGCCGTGTACCCCTCTTCACAT
Found at i:18511753 original size:12 final size:12
Alignment explanation
Indices: 18511722--18511747 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18511712 TTCAACTAAT
18511722 AAAGCAAACAAA
1 AAAGCAAACAAA
18511734 AAAGCAAACAAA
1 AAAGCAAACAAA
18511746 AA
1 AA
18511748 CACAAATGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.15, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAGCAAACAAA
Found at i:18512060 original size:114 final size:111
Alignment explanation
Indices: 18511942--18512171 Score: 261
Period size: 111 Copynumber: 2.0 Consensus size: 111
18511932 CCAAAAAAGG
* * *
18511942 TGGTGTTGGCCATCAGTGTCCCAAAGCAAAAAAAAAAAAGTACCTTGGGACTTAAAAATGCACTT
1 TGGTGTCGACCATCAGTGTCCC-AAGCAAAAAAAAAAAAGT--CTTGGGACCTAAAAATGCACTT
*
18512007 GGTGCCT-ACCATCTACT-GCTCAGCACCC-AAATTGTTTTTTAAATGACA-C
63 GGTG-CTGACCATCTACTGGC-CAACACCCAAAATT-TTTTTTAAATGA-ATC
* *** * *
18512056 TGGTGTCGACCATTAGTGTCCCAAGGTGAAAAAAAAATGTCTTGGGACCTAAAAATGTACTTGGT
1 TGGTGTCGACCATCAGTGTCCCAAGCAAAAAAAAAAAAGTCTTGGGACCTAAAAATGCACTTGGT
**
18512121 GCTGATTATCTACTGGCCAACACCCAAAATTTTTTTTAAATGAATC
66 GCTGACCATCTACTGGCCAACACCCAAAATTTTTTTTAAATGAATC
18512167 TGGTG
1 TGGTG
18512172 CCTGCCATTA
Statistics
Matches: 100, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
110 3 0.03
111 57 0.57
112 7 0.07
113 14 0.14
114 19 0.19
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (111 bp):
TGGTGTCGACCATCAGTGTCCCAAGCAAAAAAAAAAAAGTCTTGGGACCTAAAAATGCACTTGGT
GCTGACCATCTACTGGCCAACACCCAAAATTTTTTTTAAATGAATC
Found at i:18512180 original size:111 final size:112
Alignment explanation
Indices: 18511971--18512181 Score: 263
Period size: 111 Copynumber: 1.9 Consensus size: 112
18511961 CCCAAAGCAA
* *
18511971 AAAAAAAAAAGTACCTTGGGACTTAAAAATGCACTTGGTGCCTACCATCTACTGCTCAGCACCCA
1 AAAAAAAAAAGTA-CTTGGGACCTAAAAATGCACTTGGTGCCTACCATCTACTGCTCAACACCCA
*
18512036 AATTGTTTTTTAAATGACACTGGTGTCGACCATTAGTGTCCCAAGGTG
65 AATTGTTTTTTAAATGACACTGGTGCCGACCATTAGTGTCCCAAGGTG
* * **
18512084 AAAAAAAAATGT-CTTGGGACCTAAAAATGTACTTGGTG-CTGATTATCTACTGGC-CAACACCC
1 AAAAAAAAAAGTACTTGGGACCTAAAAATGCACTTGGTGCCT-ACCATCTACT-GCTCAACACCC
18512146 AAAATT-TTTTTTAAATGA-ATCTGGTGCCTG-CCATTA
64 -AAATTGTTTTTTAAATGACA-CTGGTGCC-GACCATTA
18512182 AATGGCCAGA
Statistics
Matches: 86, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
110 3 0.03
111 64 0.74
112 8 0.09
113 11 0.13
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (112 bp):
AAAAAAAAAAGTACTTGGGACCTAAAAATGCACTTGGTGCCTACCATCTACTGCTCAACACCCAA
ATTGTTTTTTAAATGACACTGGTGCCGACCATTAGTGTCCCAAGGTG
Found at i:18514121 original size:59 final size:59
Alignment explanation
Indices: 18513995--18514132 Score: 156
Period size: 59 Copynumber: 2.3 Consensus size: 59
18513985 TTTAGTGTTA
* *
18513995 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
1 ACTGGGCCTTA-CCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTAT
* *
18514056 ACTGGGCC-TACCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT-C-GAGATAT
1 ACTGGGCCTTACCCATATCAATATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TAT
* *
18514115 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTTACCCATAT
18514133 TAACACAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
58 3 0.04
59 39 0.58
60 14 0.21
61 11 0.16
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (59 bp):
ACTGGGCCTTACCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTACAGAGTAT
Found at i:18514150 original size:20 final size:20
Alignment explanation
Indices: 18514125--18514170 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
18514115 ATTGGGCCTT
18514125 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
18514145 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
18514164 GCCCATA
1 GCCCATA
18514171 ACAGAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:18514794 original size:8 final size:8
Alignment explanation
Indices: 18514780--18514819 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
18514770 TCACAAATGC
18514780 CGGCTTTT
1 CGGCTTTT
*
18514788 TGGCTTTT
1 CGGCTTTT
*
18514796 CGACTTTT
1 CGGCTTTT
*
18514804 TGGCTTTT
1 CGGCTTTT
18514812 CGGCTTTT
1 CGGCTTTT
18514820 ACCGATCTAG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.55
Consensus pattern (8 bp):
CGGCTTTT
Found at i:18514804 original size:16 final size:16
Alignment explanation
Indices: 18514783--18514819 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
18514773 CAAATGCCGG
18514783 CTTTTTGGCTTTTCGA
1 CTTTTTGGCTTTTCGA
*
18514799 CTTTTTGGCTTTTCGG
1 CTTTTTGGCTTTTCGA
18514815 CTTTT
1 CTTTT
18514820 ACCGATCTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.03, C:0.19, G:0.19, T:0.59
Consensus pattern (16 bp):
CTTTTTGGCTTTTCGA
Found at i:18526399 original size:13 final size:13
Alignment explanation
Indices: 18526380--18526438 Score: 66
Period size: 13 Copynumber: 4.5 Consensus size: 13
18526370 ATTTAATGAC
18526380 AAATTAAATTATA
1 AAATTAAATTATA
* *
18526393 CAATTAAAATAT-
1 AAATTAAATTATA
*
18526405 AAATTAAATTTAAA
1 AAATTAAA-TTATA
*
18526419 AAATTAGATTATA
1 AAATTAAATTATA
18526432 AAATTAA
1 AAATTAA
18526439 GAAACATATT
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
12 7 0.19
13 22 0.61
14 7 0.19
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (13 bp):
AAATTAAATTATA
Found at i:18526741 original size:87 final size:86
Alignment explanation
Indices: 18526624--18526797 Score: 312
Period size: 87 Copynumber: 2.0 Consensus size: 86
18526614 ATTAGCGGTT
*
18526624 GGTGAGCGGCACGATGTGTTGATTTTTGTTGAAAATGAGAATTAATTTGGTGATTTGAGAATAAG
1 GGTGAGCGGCACGATGTGTTGATTTTTGTTGAAAATAAGAATTAATTTGGTGATTTGAGAATAAG
* *
18526689 GGTAAAGGCATTTATTCAAAA
66 GGTAAAGACATTTATTAAAAA
18526710 GGTGAGCGGCACGATGGTGTTGATTTTTGTTGAAAATAAGAATTAATTTGGTGATTTGAGAATAA
1 GGTGAGCGGCACGAT-GTGTTGATTTTTGTTGAAAATAAGAATTAATTTGGTGATTTGAGAATAA
18526775 GGGTAAAGACATTTATTAAAAA
65 GGGTAAAGACATTTATTAAAAA
18526797 G
1 G
18526798 ATCTTAATAT
Statistics
Matches: 84, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
86 15 0.18
87 69 0.82
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.33
Consensus pattern (86 bp):
GGTGAGCGGCACGATGTGTTGATTTTTGTTGAAAATAAGAATTAATTTGGTGATTTGAGAATAAG
GGTAAAGACATTTATTAAAAA
Found at i:18529945 original size:19 final size:19
Alignment explanation
Indices: 18529921--18529960 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
18529911 TCAATATAGT
18529921 CATTTTTTAATTAATCAAC
1 CATTTTTTAATTAATCAAC
* *
18529940 CATTTTTTTATTAATTAAC
1 CATTTTTTAATTAATCAAC
18529959 CA
1 CA
18529961 ACTTTATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (19 bp):
CATTTTTTAATTAATCAAC
Found at i:18530012 original size:25 final size:23
Alignment explanation
Indices: 18529971--18530022 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 23
18529961 ACTTTATTTG
*
18529971 TATTATTAATTCTATTATTGCTACT
1 TATTATTAATTCCATTATT-CTA-T
18529996 TATTATT-ATTGCCATTATTCTAT
1 TATTATTAATT-CCATTATTCTAT
18530019 TATT
1 TATT
18530023 TCTTATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 5 0.20
24 6 0.24
25 14 0.56
ACGTcount: A:0.27, C:0.12, G:0.04, T:0.58
Consensus pattern (23 bp):
TATTATTAATTCCATTATTCTAT
Found at i:18530143 original size:26 final size:23
Alignment explanation
Indices: 18530091--18530143 Score: 61
Period size: 26 Copynumber: 2.2 Consensus size: 23
18530081 TAATCATTAT
**
18530091 TATTCTTTATTTGTTATTGTTGT
1 TATTCTTTATTTGTTATTGTTAA
18530114 TATTCTATTATTTTCGTTATTGTTAA
1 TATTCT-TTA-TTT-GTTATTGTTAA
18530140 TATT
1 TATT
18530144 GGAGCTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 3 0.12
25 3 0.12
26 13 0.52
ACGTcount: A:0.19, C:0.06, G:0.09, T:0.66
Consensus pattern (23 bp):
TATTCTTTATTTGTTATTGTTAA
Found at i:18543130 original size:75 final size:75
Alignment explanation
Indices: 18543047--18543470 Score: 418
Period size: 75 Copynumber: 5.6 Consensus size: 75
18543037 ATTTCTGTTT
* *
18543047 TCAAAAAAATCAACTCATAATTACGAGAGGTGAGTTGAGCCTCGGGGCACGCCAAGGTATTTTCA
1 TCAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCA
18543112 AATTCTACTT-
65 AATTCTACTTG
*
18543122 TCAAAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCCGAGGTATTTTCA
1 TCAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCA
18543187 AATTCTACTT-
65 AATTCTACTTG
* * ** * * *
18543197 T-AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACG-TGTTGAGTCACTTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCG-AG-GT-ATTTT
**
18543260 C-AATTCCTGTTTTTATG
63 CAAATT-C---TACT-TG
*** * * *
18543277 TCTATTTTCTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGTACACTGAGGTATTT
1 TC-A---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTT
*
18543342 TCAATTATTGT--TTG
62 TCAA--ATTCTACTTG
*
18543356 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC-A
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAA
*
18543420 ATTACTATTTG
66 ATT-CTACTTG
* *
18543431 TC--AAAAATCAACTCATACTGCAAGAGGTGAGTTGAGCCTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
18543471 AGGATATGCT
Statistics
Matches: 296, Mismatches: 32, Indels: 44
0.80 0.09 0.12
Matches are distributed among these distances:
72 4 0.01
73 66 0.22
74 23 0.08
75 139 0.47
78 3 0.01
79 5 0.02
80 2 0.01
82 2 0.01
83 5 0.02
84 3 0.01
85 39 0.13
86 5 0.02
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (75 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAA
ATTCTACTTG
Found at i:18543619 original size:73 final size:73
Alignment explanation
Indices: 18543500--18543702 Score: 291
Period size: 73 Copynumber: 2.8 Consensus size: 73
18543490 TTGATTTTTA
* * *
18543500 TTTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCTTCGCGTCGCA
1 TTTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGCGTCACA
**
18543565 TAGCGAGG
66 TAGAAAGG
* *
18543573 TTTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGGGTCATA
1 TTTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGCGTCACA
18543638 TAGAAAGG
66 TAGAAAGG
* * * *
18543646 TATTTTCAATTTATG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTC
1 T-TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTC
18543703 AGGTCATACG
Statistics
Matches: 118, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
73 105 0.89
74 13 0.11
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (73 bp):
TTTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGCGTCACA
TAGAAAGG
Found at i:18543659 original size:159 final size:158
Alignment explanation
Indices: 18543360--18543666 Score: 338
Period size: 159 Copynumber: 1.9 Consensus size: 158
18543350 TGTTTGTCAA
* * * *
18543360 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTAC
1 AAAAATCAACTCATATTGCGAAAGGTGAATTGAGCCTCGGCGCAAGCTGAGGTATTTTCAATTA-
* **
18543425 TATTTGTCAAAAATCAACTCATACTGCAAGAGGTGAGTTGAGCCTCAGGATATGCTGAGGTATTT
65 TATTTGTCAAAAATCAACTCATACTGCAAGAGGTGAATTGAGCCTCAGGATATGCAAAGGTATTT
* * *
18543490 TTGATTTTTATTTTTCAATTTATGTTTTC
130 TTCATATTTATGTTTCAATTTATGTTTTC
* * *
18543519 AAAAATCAATTCATATTGCTAAAGGTGAATTGAGCTTCGCGTCGCATAGC-GAGGT-TTTTCAAT
1 AAAAATCAACTCATATTGCGAAAGGTGAATTGAGCCTCG-G-CGCA-AGCTGAGGTATTTTCAAT
* * * * *
18543582 T-TATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGGGTCATATAG-AAAG
63 TATAT-TTGTCAAAAATCAACTCATACTGCAAGAGGTGAATTGAGCCTCAGG--ATAT-GCAAAG
18543645 GTA-TTTTCA-ATTTATGTTTCAA
124 GTATTTTTCATATTTATGTTTCAA
18543667 AAATCAACTC
Statistics
Matches: 123, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
158 3 0.02
159 85 0.69
160 15 0.12
161 17 0.14
162 3 0.02
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (158 bp):
AAAAATCAACTCATATTGCGAAAGGTGAATTGAGCCTCGGCGCAAGCTGAGGTATTTTCAATTAT
ATTTGTCAAAAATCAACTCATACTGCAAGAGGTGAATTGAGCCTCAGGATATGCAAAGGTATTTT
TCATATTTATGTTTCAATTTATGTTTTC
Found at i:18543720 original size:73 final size:71
Alignment explanation
Indices: 18543501--18543728 Score: 289
Period size: 73 Copynumber: 3.1 Consensus size: 71
18543491 TGATTTTTAT
* *
18543501 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAATTGAGCTTCGCGTCGCAT
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCG-GT--CAT
18543566 AGCGAGGT-
63 AGCGAGGTA
18543574 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGGGTCATAT
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTC-GGTC--AT
**
18543639 AGAAAGGTA
63 AGCGAGGTA
* * * *
18543648 TTTTCAATTTATG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCATAC
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTC-GGTCATA-
18543712 GCCGAGGTA
64 G-CGAGGTA
18543721 TTTTCAAT
1 TTTTCAAT
18543729 AGATTTTTTT
Statistics
Matches: 138, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
71 4 0.03
72 1 0.01
73 119 0.86
74 14 0.10
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (71 bp):
TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGGTCATAGC
GAGGTA
Found at i:18543888 original size:80 final size:80
Alignment explanation
Indices: 18543736--18544055 Score: 288
Period size: 91 Copynumber: 3.8 Consensus size: 80
18543726 AATAGATTTT
* * *
18543736 TTTTCAATTTCTGCTTCTCAAA-AAAAAAATTAACTCATATTGCGA-AGGTGAGTTGAGCCTTGG
1 TTTTCAA-TTCTGCTTTTCAAATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
*
18543799 CTTACACGCTGAGGTA
65 CTCACACGCTGAGGTA
*
18543815 ATTTCAAGTTCTGCTTTTCAAA-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
1 TTTTCAA-TTCTGCTTTTCAAATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
*
18543879 CTCGCACGCTGAGGTA
65 CTCACACGCTGAGGTA
* * *
18543895 TTTTCAATTTTCGTTTTTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGT
1 TTTTCAATTCT-G-CTTTTCAA---A------TAAAAAAATCAACTCATATTGCGAGAGGTGAGT
* *
18543960 TGAGCCTCGGGTCACATG-TCGAGGTA
55 TGAGCCTCGGCTCACACGCT-GAGGTA
* *
18543986 TTTTCAAAATCTGCTTTTCAAATTAAGTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTC-AATTCTGCTTTTC--A--AA---T-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
18544051 AGCCT
57 AGCCT
18544056 TAGCTCACGT
Statistics
Matches: 201, Mismatches: 20, Indels: 30
0.80 0.08 0.12
Matches are distributed among these distances:
79 44 0.22
80 38 0.19
81 7 0.03
84 1 0.00
88 3 0.01
89 37 0.18
90 6 0.03
91 59 0.29
92 5 0.02
94 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (80 bp):
TTTTCAATTCTGCTTTTCAAATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC
TCACACGCTGAGGTA
Found at i:18544077 original size:89 final size:91
Alignment explanation
Indices: 18543837--18544077 Score: 303
Period size: 91 Copynumber: 2.7 Consensus size: 91
18543827 GCTTTTCAAA
* *
18543837 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCGCACGCTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAA
* * * * *
18543902 TTTTCGTTTTTTCAATTTATGCTTTTC
66 ATCTCGTCTTTTCAAATTAAGC-TTTC
*
18543929 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCT-GAGGTATTTTC-
18543992 AAATCT-G-CTTTTCAAATTAAG-TTTC
64 AAATCTCGTCTTTTCAAATTAAGCTTTC
* ** * *
18544017 AAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTCACGTGCTGAGCTATTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTT
18544078 CTGTTTTAAT
Statistics
Matches: 131, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
88 4 0.03
89 52 0.40
90 13 0.10
91 58 0.44
92 4 0.03
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (91 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAA
ATCTCGTCTTTTCAAATTAAGCTTTC
Found at i:18544330 original size:52 final size:51
Alignment explanation
Indices: 18544223--18544335 Score: 149
Period size: 52 Copynumber: 2.2 Consensus size: 51
18544213 AAGCTAATTG
* * *
18544223 AAGTTT-AATAGAGAAGATCGAAACTACAAATCTCTTCTCCTTAAACCCTTG
1 AAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCTTCTCCTGAAACCC-TA
*
18544274 AAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCTTCTCCCTGAATCTCC-A
1 AAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCTTCT-CCTGAAAC-CCTA
18544326 AAGTTTCAGT
1 AAGTTTCAGT
18544336 GTAGTAGGTC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
51 6 0.11
52 41 0.75
53 6 0.11
54 2 0.04
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.29
Consensus pattern (51 bp):
AAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCTTCTCCTGAAACCCTA
Found at i:18545979 original size:19 final size:19
Alignment explanation
Indices: 18545955--18545994 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
18545945 TCAATATAGT
18545955 CATTTTTTAATTAATCAAC
1 CATTTTTTAATTAATCAAC
* *
18545974 CATTTTTTTATTAATTAAC
1 CATTTTTTAATTAATCAAC
18545993 CA
1 CA
18545995 ACTTTATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (19 bp):
CATTTTTTAATTAATCAAC
Found at i:18546046 original size:25 final size:23
Alignment explanation
Indices: 18546005--18546056 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 23
18545995 ACTTTATTTG
*
18546005 TATTATTAATTCTATTATTGCTACT
1 TATTATTAATTCCATTATT-CTA-T
18546030 TATTATT-ATTGCCATTATTCTAT
1 TATTATTAATT-CCATTATTCTAT
18546053 TATT
1 TATT
18546057 TCTTATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 5 0.20
24 6 0.24
25 14 0.56
ACGTcount: A:0.27, C:0.12, G:0.04, T:0.58
Consensus pattern (23 bp):
TATTATTAATTCCATTATTCTAT
Found at i:18546177 original size:26 final size:23
Alignment explanation
Indices: 18546125--18546177 Score: 61
Period size: 26 Copynumber: 2.2 Consensus size: 23
18546115 TAATCATTAT
**
18546125 TATTCTTTATTTGTTATTGTTGT
1 TATTCTTTATTTGTTATTGTTAA
18546148 TATTCTATTATTTTCGTTATTGTTAA
1 TATTCT-TTA-TTT-GTTATTGTTAA
18546174 TATT
1 TATT
18546178 GGAGCTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 3 0.12
25 3 0.12
26 13 0.52
ACGTcount: A:0.19, C:0.06, G:0.09, T:0.66
Consensus pattern (23 bp):
TATTCTTTATTTGTTATTGTTAA
Found at i:18548703 original size:18 final size:18
Alignment explanation
Indices: 18548680--18548733 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 18
18548670 ATTTTAAAAA
18548680 TAATATTATTTAATAGTT
1 TAATATTATTTAATAGTT
*
18548698 TAATATTAAATTAA-A-TT
1 TAATATT-ATTTAATAGTT
18548715 TAATATTTATCTTAATAGT
1 TAATA-TTAT-TTAATAGT
18548734 ATTTTATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
17 8 0.28
18 14 0.48
19 6 0.21
20 1 0.03
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.52
Consensus pattern (18 bp):
TAATATTATTTAATAGTT
Found at i:18548742 original size:37 final size:35
Alignment explanation
Indices: 18548680--18548823 Score: 94
Period size: 33 Copynumber: 4.2 Consensus size: 35
18548670 ATTTTAAAAA
18548680 TAATATTATTTAATAGTTTAATATTAAATTAAATT
1 TAATATTATTTAATAGTTTAATATTAAATTAAATT
* *
18548715 TAATATTTATCTTAATAGTATT-TTATT-AATTTAATAT
1 TAATA-TTAT-TTAATAGT-TTAATATTAAATTAAAT-T
* * *
18548752 TAA-AGTGA-TT-ATA--TTAATATTAAATTTAATC
1 TAATA-TTATTTAATAGTTTAATATTAAATTAAATT
*
18548783 TAATATTTATCTTAATA----AATATTAGATTAAATT
1 TAATA-TTAT-TTAATAGTTTAATATTAAATTAAATT
18548816 TAATATTA
1 TAATATTA
18548824 AAGTGATTAA
Statistics
Matches: 88, Mismatches: 11, Indels: 23
0.72 0.09 0.19
Matches are distributed among these distances:
30 2 0.02
31 7 0.08
32 14 0.16
33 21 0.24
34 4 0.05
35 8 0.09
36 14 0.16
37 16 0.18
38 2 0.02
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (35 bp):
TAATATTATTTAATAGTTTAATATTAAATTAAATT
Found at i:18548774 original size:68 final size:70
Alignment explanation
Indices: 18548697--18548832 Score: 213
Period size: 68 Copynumber: 2.0 Consensus size: 70
18548687 ATTTAATAGT
* * **
18548697 TTAATATTAAATTAAATTTAATATTTATCTTAAT-AGTATTTTATT-AATTTAATATTAAAGTGA
1 TTAATATTAAATTAAATCTAATATTTATCTTAATAAATATTAGATTAAATTTAATATTAAAGTGA
18548760 TTATA
66 TTATA
*
18548765 TTAATATTAAATTTAATCTAATATTTATCTTAATAAATATTAGATTAAATTTAATATTAAAGTGA
1 TTAATATTAAATTAAATCTAATATTTATCTTAATAAATATTAGATTAAATTTAATATTAAAGTGA
18548830 TTA
66 TTA
18548833 AGTTTAATCA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
68 32 0.52
69 8 0.13
70 21 0.34
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49
Consensus pattern (70 bp):
TTAATATTAAATTAAATCTAATATTTATCTTAATAAATATTAGATTAAATTTAATATTAAAGTGA
TTATA
Found at i:18553463 original size:19 final size:21
Alignment explanation
Indices: 18553415--18553463 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
18553405 ATGTAAACAT
* *
18553415 TAAAATAATGTTTAAGATAGA
1 TAAAAAAATGTTTAAGATAAA
*
18553436 TATAAAAAT-TTTAA-ATAAA
1 TAAAAAAATGTTTAAGATAAA
18553455 TAAAAAAAT
1 TAAAAAAAT
18553464 AAAATTATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 12 0.50
20 5 0.21
21 7 0.29
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (21 bp):
TAAAAAAATGTTTAAGATAAA
Found at i:18553946 original size:36 final size:36
Alignment explanation
Indices: 18553906--18553974 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
18553896 TTTTTAATGT
*
18553906 TTTAA-AATATATATTTATATTTATTTTAATATAATA
1 TTTAATAATATA-ATATATATTTATTTTAATATAATA
* * *
18553942 TTTAATAATTTAATATATTTTTATTTTATTATA
1 TTTAATAATATAATATATATTTATTTTAATATA
18553975 GTTTTATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
36 23 0.82
37 5 0.18
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (36 bp):
TTTAATAATATAATATATATTTATTTTAATATAATA
Found at i:18553974 original size:16 final size:16
Alignment explanation
Indices: 18553925--18553981 Score: 51
Period size: 16 Copynumber: 3.3 Consensus size: 16
18553915 TATATTTATA
*
18553925 TTTATTTTAATATAAT
1 TTTATTTTAATATAGT
*
18553941 ATTTAATAATTTAATATATT
1 -TTT-AT--TTTAATATAGT
*
18553961 TTTATTTTATTATAGT
1 TTTATTTTAATATAGT
18553977 TTTAT
1 TTTAT
18553982 ATATAGTCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
16 14 0.41
17 3 0.09
18 4 0.12
19 3 0.09
20 10 0.29
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (16 bp):
TTTATTTTAATATAGT
Found at i:18555489 original size:2 final size:2
Alignment explanation
Indices: 18555482--18555515 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
18555472 TACTTTAAAA
18555482 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18555516 GGGCAGGTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18555959 original size:23 final size:20
Alignment explanation
Indices: 18555907--18555961 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 20
18555897 TTTTTAAAAA
18555907 AATATATTTATATTTATTTT
1 AATATATTTATATTTATTTT
*
18555927 AACATAATATTTA-A--TAATTT
1 -A-AT-ATATTTATATTTATTTT
18555947 AATATATTTATATTT
1 AATATATTTATATTT
18555962 TGTTATAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 11
0.70 0.03 0.28
Matches are distributed among these distances:
17 7 0.25
18 3 0.11
19 1 0.04
20 6 0.21
21 1 0.04
22 3 0.11
23 7 0.25
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
AATATATTTATATTTATTTT
Found at i:18556632 original size:30 final size:31
Alignment explanation
Indices: 18556596--18556683 Score: 99
Period size: 31 Copynumber: 2.8 Consensus size: 31
18556586 ATCATACACG
*
18556596 AACTTTAATTTGGTATAATTATACACG-TGA
1 AACTTTAATTTGGTTTAATTATACACGTTGA
* *
18556626 AACTTTAATTGTGGTTTAAATATATA-GTTGA
1 AACTTTAATT-TGGTTTAATTATACACGTTGA
* *
18556657 AACTTTAAGTTTGATTTAATCATACAC
1 AACTTTAA-TTTGGTTTAATTATACAC
18556684 ATTTAAAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
30 11 0.23
31 34 0.72
32 2 0.04
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.42
Consensus pattern (31 bp):
AACTTTAATTTGGTTTAATTATACACGTTGA
Found at i:18557002 original size:2 final size:2
Alignment explanation
Indices: 18556995--18557023 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
18556985 TATCAATGTG
18556995 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
18557024 GTAAATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18557748 original size:11 final size:10
Alignment explanation
Indices: 18557728--18557757 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
18557718 TAAATTGTGC
18557728 ATATTAAAAA
1 ATATTAAAAA
18557738 ATATATAAAAA
1 ATAT-TAAAAA
18557749 ATATTAAAA
1 ATATTAAAA
18557758 TAAAATTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
ATATTAAAAA
Found at i:18563474 original size:13 final size:13
Alignment explanation
Indices: 18563456--18563480 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18563446 AGGATTGCAA
18563456 ATTTCCATTTTTC
1 ATTTCCATTTTTC
18563469 ATTTCCATTTTT
1 ATTTCCATTTTT
18563481 GGAAACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTTCCATTTTTC
Found at i:18568033 original size:11 final size:11
Alignment explanation
Indices: 18568017--18568041 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18568007 TTAATGTGTC
18568017 AATATGCCAAT
1 AATATGCCAAT
18568028 AATATGCCAAT
1 AATATGCCAAT
18568039 AAT
1 AAT
18568042 TTGATATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (11 bp):
AATATGCCAAT
Found at i:18572809 original size:12 final size:12
Alignment explanation
Indices: 18572792--18572836 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
18572782 ATTACATAAG
18572792 ATTTAATTTATT
1 ATTTAATTTATT
**
18572804 ATTTAACTATTAAG
1 ATTTAA-T-TTATT
18572818 ATTTAATTTATT
1 ATTTAATTTATT
18572830 ATTTAAT
1 ATTTAAT
18572837 AGTTAAATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 16 0.59
13 2 0.07
14 9 0.33
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (12 bp):
ATTTAATTTATT
Found at i:18573168 original size:17 final size:16
Alignment explanation
Indices: 18573130--18573168 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
18573120 GTGGGGTGTG
*
18573130 AAGGTTGAGTAAAAAT
1 AAGGTTGAGAAAAAAT
18573146 ATAGGTTGAGAAAAAAAT
1 A-AGGTTGAG-AAAAAAT
18573164 AAGGT
1 AAGGT
18573169 CTATTTAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 12 0.60
18 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.23
Consensus pattern (16 bp):
AAGGTTGAGAAAAAAT
Found at i:18573274 original size:9 final size:8
Alignment explanation
Indices: 18573255--18573325 Score: 52
Period size: 8 Copynumber: 8.1 Consensus size: 8
18573245 TTTATTGTTA
18573255 TTTTTTAT
1 TTTTTTAT
18573263 TTTTTTAT
1 TTTTTTAT
18573271 TTTTTTCAT
1 TTTTTT-AT
* *
18573280 TGTTTTGT
1 TTTTTTAT
18573288 TGTCATTTTAT
1 T-T--TTTTAT
*
18573299 TATTTTAT
1 TTTTTTAT
*
18573307 TATTATTAT
1 T-TTTTTAT
18573316 TTTTGTTAT
1 TTTT-TTAT
18573325 T
1 T
18573326 ATTGTTTAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
8 25 0.51
9 18 0.37
11 6 0.12
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.76
Consensus pattern (8 bp):
TTTTTTAT
Found at i:18573309 original size:11 final size:11
Alignment explanation
Indices: 18573295--18573379 Score: 52
Period size: 11 Copynumber: 8.0 Consensus size: 11
18573285 TGTTGTCATT
18573295 TTATTATTTTA
1 TTATTATTTTA
18573306 TTATTA--TTA
1 TTATTATTTTA
*
18573315 TT-TT-TGTTA
1 TTATTATTTTA
* *
18573324 TTATTGTTTAA
1 TTATTATTTTA
* * *
18573335 ATATTATATAA
1 TTATTATTTTA
* *
18573346 CTCTTATTTTA
1 TTATTATTTTA
18573357 TTATTAATTTTA
1 TTATT-ATTTTA
*
18573369 TTACTATTTTA
1 TTATTATTTTA
18573380 AATGTATTTA
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
8 2 0.04
9 10 0.18
10 2 0.04
11 33 0.58
12 10 0.18
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:18573322 original size:39 final size:37
Alignment explanation
Indices: 18573244--18573330 Score: 95
Period size: 39 Copynumber: 2.2 Consensus size: 37
18573234 TAAATTGTTA
* *
18573244 TTTTATTGTTATTTTTTATTTTTTTATTTTTTTCATTG
1 TTTTATTGTCATTTTTTATTTTATTATTTTTTT-ATTG
*
18573282 TTTTGTTGTCATTTTATTATTTTATTATTATTATTT-TTG
1 TTTTATTGTCATTTT-TTATTTTATTATT-TT-TTTATTG
18573321 TTATTATTGT
1 TT-TTATTGT
18573331 TTAAATATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
38 13 0.32
39 17 0.41
40 8 0.20
41 3 0.07
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.75
Consensus pattern (37 bp):
TTTTATTGTCATTTTTTATTTTATTATTTTTTTATTG
Found at i:18573324 original size:15 final size:14
Alignment explanation
Indices: 18573241--18573328 Score: 56
Period size: 15 Copynumber: 6.1 Consensus size: 14
18573231 AAATAAATTG
*
18573241 TTATTTTATTGTTA
1 TTATTTTATTATTA
*
18573255 TT-TTTTATT-TTT
1 TTATTTTATTATTA
* *
18573267 TTATTTTTTTCATTG
1 TTATTTTATT-ATTA
*
18573282 TTTTGTTGTCATT-TTA
1 TTAT-TT-T-ATTATTA
18573298 TTATTTTATTATTA
1 TTATTTTATTATTA
*
18573312 TTATTTTTGTTATTA
1 TTA-TTTTATTATTA
18573327 TT
1 TT
18573329 GTTTAAATAT
Statistics
Matches: 58, Mismatches: 8, Indels: 15
0.72 0.10 0.19
Matches are distributed among these distances:
12 4 0.07
13 16 0.28
14 9 0.16
15 19 0.33
16 7 0.12
17 1 0.02
18 2 0.03
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.75
Consensus pattern (14 bp):
TTATTTTATTATTA
Found at i:18574183 original size:19 final size:18
Alignment explanation
Indices: 18574159--18574201 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
18574149 TGAAATTTTA
18574159 ATTTAAACACACATT-AAAT
1 ATTTAAA-ACA-ATTGAAAT
*
18574178 ATTTAAAACATTTGAAAT
1 ATTTAAAACAATTGAAAT
18574196 ATTTAA
1 ATTTAA
18574202 TACTAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 2 0.09
18 13 0.59
19 7 0.32
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.37
Consensus pattern (18 bp):
ATTTAAAACAATTGAAAT
Found at i:18575662 original size:21 final size:21
Alignment explanation
Indices: 18575638--18575677 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
18575628 CTCTTAAAAT
*
18575638 TCTCTCAAATTTTTTCAAAGC
1 TCTCTCAAATTTTTGCAAAGC
**
18575659 TCTCTTTAATTTTTGCAAA
1 TCTCTCAAATTTTTGCAAA
18575678 AAAGCTCTGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.20, G:0.05, T:0.47
Consensus pattern (21 bp):
TCTCTCAAATTTTTGCAAAGC
Found at i:18575842 original size:22 final size:22
Alignment explanation
Indices: 18575814--18575890 Score: 75
Period size: 22 Copynumber: 3.3 Consensus size: 22
18575804 ATAATTTTAA
18575814 TTTTTCAATACTATTTAATATT
1 TTTTTCAATACTATTTAATATT
* * *
18575836 TTTTTCATTTATGCAATTTTAAT-TAA
1 TTTTTCA---ATACTA-TTTAATAT-T
18575862 TTTTTCAATACTATTTAATATT
1 TTTTTCAATACTATTTAATATT
18575884 TTTTTCA
1 TTTTTCA
18575891 TTTATGCAGT
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
22 20 0.47
23 5 0.12
25 5 0.12
26 13 0.30
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.60
Consensus pattern (22 bp):
TTTTTCAATACTATTTAATATT
Found at i:18575873 original size:48 final size:48
Alignment explanation
Indices: 18575810--18575914 Score: 201
Period size: 48 Copynumber: 2.2 Consensus size: 48
18575800 AGTGATAATT
18575810 TTAATTTTTCAATACTATTTAATATTTTTTTCATTTATGCAATTTTAA
1 TTAATTTTTCAATACTATTTAATATTTTTTTCATTTATGCAATTTTAA
*
18575858 TTAATTTTTCAATACTATTTAATATTTTTTTCATTTATGCAGTTTTAA
1 TTAATTTTTCAATACTATTTAATATTTTTTTCATTTATGCAATTTTAA
18575906 TTAATTTTT
1 TTAATTTTT
18575915 ATTTTATAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 56 1.00
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.60
Consensus pattern (48 bp):
TTAATTTTTCAATACTATTTAATATTTTTTTCATTTATGCAATTTTAA
Found at i:18575904 original size:26 final size:26
Alignment explanation
Indices: 18575827--18575906 Score: 80
Period size: 26 Copynumber: 3.2 Consensus size: 26
18575817 TTCAATACTA
18575827 TTTAATATTTTTTTCATTTATGCAAT
1 TTTAATATTTTTTTCATTTATGCAAT
* * *
18575853 TTTAAT-TAATTTTTCA---ATACTA-
1 TTTAATAT-TTTTTTCATTTATGCAAT
*
18575875 TTTAATATTTTTTTCATTTATGCAGT
1 TTTAATATTTTTTTCATTTATGCAAT
18575901 TTTAAT
1 TTTAAT
18575907 TAATTTTTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
22 13 0.32
23 5 0.12
25 4 0.10
26 19 0.46
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.60
Consensus pattern (26 bp):
TTTAATATTTTTTTCATTTATGCAAT
Found at i:18575913 original size:26 final size:26
Alignment explanation
Indices: 18575836--18575918 Score: 79
Period size: 26 Copynumber: 3.4 Consensus size: 26
18575826 ATTTAATATT
18575836 TTTTTCATTTATGCAATTTTAATTAA
1 TTTTTCATTTATGCAATTTTAATTAA
* * *
18575862 TTTTTCA---ATACTA-TTTAA-TATT
1 TTTTTCATTTATGCAATTTTAATTA-A
*
18575884 TTTTTCATTTATGCAGTTTTAATTAA
1 TTTTTCATTTATGCAATTTTAATTAA
18575910 TTTTT-ATTT
1 TTTTTCATTT
18575919 TATAATTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 13
0.69 0.11 0.20
Matches are distributed among these distances:
21 2 0.05
22 12 0.27
23 4 0.09
25 7 0.16
26 17 0.39
27 2 0.05
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.61
Consensus pattern (26 bp):
TTTTTCATTTATGCAATTTTAATTAA
Found at i:18577145 original size:26 final size:26
Alignment explanation
Indices: 18577109--18577269 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
18577099 TGATACAAAT
18577109 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
18577135 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
18577161 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
18577187 TGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
18577212 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
18577238 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
18577264 TGATAA
1 TGATAA
18577270 GAATTTCATG
Statistics
Matches: 131, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
25 24 0.18
26 107 0.82
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:18577230 original size:77 final size:78
Alignment explanation
Indices: 18577109--18577269 Score: 270
Period size: 77 Copynumber: 2.1 Consensus size: 78
18577099 TGATACAAAT
18577109 TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTA
18577174 GGTAAATGTTCCA
66 GGTAAATGTTCCA
* * * *
18577187 TGATAATGGGTTAGGTAAATG-TTCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTA
*
18577251 GGTAAATGTTTCA
66 GGTAAATGTTCCA
18577264 TGATAA
1 TGATAA
18577270 GAATTTCATG
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
77 58 0.74
78 20 0.26
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (78 bp):
TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTA
GGTAAATGTTCCA
Found at i:18583006 original size:26 final size:26
Alignment explanation
Indices: 18582947--18583107 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
18582937 TGATACAAAT
18582947 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
18582972 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
18582998 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
18583024 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
18583050 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
18583076 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
18583102 TGATAA
1 TGATAA
18583108 GAATTTCATG
Statistics
Matches: 132, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
25 21 0.16
26 111 0.84
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:18584621 original size:25 final size:26
Alignment explanation
Indices: 18584580--18584631 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
18584570 ATTTACAGTT
18584580 TACCCCTAGGTGAAAATT-ACCGAAA
1 TACCCCTAGGTGAAAATTGACCGAAA
* *
18584605 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTG-AAAATTGACCGAAA
18584631 T
1 T
18584632 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.04
25 15 0.65
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGTGAAAATTGACCGAAA
Found at i:18587464 original size:27 final size:27
Alignment explanation
Indices: 18587432--18587493 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
18587422 TGAACTATGA
18587432 CAAAGTGATAAAGTGTGCCAAACATGG
1 CAAAGTGATAAAGTGTGCCAAACATGG
*
18587459 CAAAGTGATAAAGTGTGCCAAATATGG
1 CAAAGTGATAAAGTGTGCCAAACATGG
18587486 CAAAGTGA
1 CAAAGTGA
18587494 AATGTGACAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.42, C:0.13, G:0.26, T:0.19
Consensus pattern (27 bp):
CAAAGTGATAAAGTGTGCCAAACATGG
Found at i:18587628 original size:25 final size:25
Alignment explanation
Indices: 18587596--18587645 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
18587586 AATATGATTG
*
18587596 GATATTTGATGTTTTAAAATTGAGC
1 GATATTTGATGTTGTAAAATTGAGC
18587621 GATATTTGATGTTGTAAAATTGAGC
1 GATATTTGATGTTGTAAAATTGAGC
18587646 TCAATGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.32, C:0.04, G:0.22, T:0.42
Consensus pattern (25 bp):
GATATTTGATGTTGTAAAATTGAGC
Found at i:18588853 original size:7 final size:7
Alignment explanation
Indices: 18588832--18588881 Score: 73
Period size: 7 Copynumber: 7.0 Consensus size: 7
18588822 CATAATAAAA
18588832 TAGTCATT
1 TAGT-ATT
*
18588840 TCGTATT
1 TAGTATT
*
18588847 TAATATT
1 TAGTATT
18588854 TAGTATT
1 TAGTATT
18588861 TAGTATT
1 TAGTATT
18588868 TAGTATT
1 TAGTATT
18588875 TAGTATT
1 TAGTATT
18588882 ATTTATATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
7 35 0.92
8 3 0.08
ACGTcount: A:0.28, C:0.04, G:0.12, T:0.56
Consensus pattern (7 bp):
TAGTATT
Found at i:18589442 original size:30 final size:29
Alignment explanation
Indices: 18589378--18589442 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
18589368 GATGACGACG
* *
18589378 CGGGCCCATAACAGCGCCCACACAATCAC
1 CGGGCCCATAACAGCGCCAACACAATAAC
* * *
18589407 TGGGCCCATCAACAGTGCCAACACAGTAAC
1 CGGGCCCAT-AACAGCGCCAACACAATAAC
18589437 CGGGCC
1 CGGGCC
18589443 TAACATTTCA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
29 8 0.28
30 21 0.72
ACGTcount: A:0.29, C:0.40, G:0.22, T:0.09
Consensus pattern (29 bp):
CGGGCCCATAACAGCGCCAACACAATAAC
Found at i:18590071 original size:10 final size:8
Alignment explanation
Indices: 18590041--18590065 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
18590031 TTGAATAAGA
18590041 TAATATTT
1 TAATATTT
18590049 TAATATTT
1 TAATATTT
18590057 TAATATTT
1 TAATATTT
18590065 T
1 T
18590066 TTAATAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TAATATTT
Found at i:18593338 original size:126 final size:126
Alignment explanation
Indices: 18593108--18593754 Score: 961
Period size: 126 Copynumber: 5.1 Consensus size: 126
18593098 GCCAAATAGG
* * * * *
18593108 TACTATAGAAAAAGAGCGTCCACGTGGGAACATTTTTCAGTAATTTTGCTAATAGTGCATCCTGC
1 TACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGC
18593173 TTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATAC
66 TTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATAC
18593234 TACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGC
1 TACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGC
* * * *
18593299 TTGAAGTGTTTTGCACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTTAGATAT
66 TTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATAC
* * * * * * *
18593360 TATTGTAGAAAAAGAGCGTCCACATGGAAACTTTTTTCAGTAATTTTGTTGACAGTTCATCCTTC
1 TACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGC
* *
18593425 TTGAAGCGTTTTGGACACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTCAAATAC
66 TTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATAC
* * ** * * *
18593486 TACTCTAGAAAAAAAAATGTCCACGTAGGAGCTTTTTTCAGTAATTTTGTTGACAGTGTATCCTG
1 TACTGTAG-AAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTG
18593551 CTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATAC
65 CTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATAC
* * *
18593613 CACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTATTAGTAATTTTGCTGACAGTGCATCC
1 TACTGTAGAAAAAGAGCGTCCACGTGGGAGC--TTTTT-TCAGTAATTTTGCTGACAGTGCATCC
* * * * *
18593678 TGTTTGAAGTGTTTTAGACACTATTTGTTTAGAAACGTCTTCTCAAAATCATTTTTTCAGATAC
63 TGCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATAC
18593742 TACTGTAGAAAAA
1 TACTGTAGAAAAA
18593755 AATAAAAAAA
Statistics
Matches: 465, Mismatches: 52, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
126 254 0.55
127 112 0.24
128 5 0.01
129 94 0.20
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (126 bp):
TACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGC
TTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATAC
Found at i:18593649 original size:253 final size:253
Alignment explanation
Indices: 18593113--18593756 Score: 977
Period size: 253 Copynumber: 2.5 Consensus size: 253
18593103 ATAGGTACTA
* * * *
18593113 TAGAAAAAGAGCGTCCACGTGGGAACATTTTTCAGTAATTTTGCTAATAGTGCATCCTGCTTGAA
1 TAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTGACAGTGCATCCTTCTTGAA
*
18593178 GCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATACTACTGTAG-
66 GCGTTTTGGACACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTCAGATACTACTGTAGA
* * * *
18593242 AAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTGAAGTG
131 AAAAAAAACGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTGAAGCG
* ** *
18593307 TTTTGCACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTTAGATATTATTG
196 TTTTGCACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATACCACTG
* * * *
18593365 TAGAAAAAGAGCGTCCACATGGAAACTTTTTTCAGTAATTTTGTTGACAGTTCATCCTTCTTGAA
1 TAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTGACAGTGCATCCTTCTTGAA
* *
18593430 GCGTTTTGGACACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTCAAATACTACTCTAGA
66 GCGTTTTGGACACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTCAGATACTACTGTAGA
* * *
18593495 AAAAAAAATGTCCACGTAGGAGCTTTTTTCAGTAATTTTGTTGACAGTGTATCCTGCTTGAAGCG
131 AAAAAAAACGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTGAAGCG
*
18593560 TTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATACCACTG
196 TTTTGCACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATACCACTG
* * *
18593618 TAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTATTAGTAATTTTGCTGACAGTGCATCCTGT-T
1 TAGAAAAAGAGCGTCCACGTGGGAAC--TTTTT-TCAGTAATTTTGCTGACAGTGCATCCT-TCT
* * *
18593682 TGAAGTGTTTTAGACACTATTTGTTTAGAAACGTCTTCTCAAAATCATTTTTTCAGATACTACTG
62 TGAAGCGTTTTGGACACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTCAGATACTACTG
18593747 TAGAAAAAAA
127 TAGAAAAAAA
18593757 TAAAAAAAAT
Statistics
Matches: 352, Mismatches: 35, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
252 118 0.34
253 133 0.38
255 5 0.01
256 95 0.27
257 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.37
Consensus pattern (253 bp):
TAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTGACAGTGCATCCTTCTTGAA
GCGTTTTGGACACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTCAGATACTACTGTAGA
AAAAAAAACGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTGAAGCG
TTTTGCACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATACCACTG
Found at i:18598116 original size:3 final size:3
Alignment explanation
Indices: 18598108--18598132 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
18598098 TAAACCTTAA
18598108 AAC AAC AAC AAC AAC AAC AAC AAC A
1 AAC AAC AAC AAC AAC AAC AAC AAC A
18598133 GCAAGCTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:18598486 original size:39 final size:39
Alignment explanation
Indices: 18598440--18598518 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
18598430 GATGATCACC
18598440 TCCATAATCTGAAAAGGAAAATCGATAGTAAATGATTTA
1 TCCATAATCTGAAAAGGAAAATCGATAGTAAATGATTTA
18598479 TCCATAATCTGAAAAGGAAAATCGATAGTAAATGATTTA
1 TCCATAATCTGAAAAGGAAAATCGATAGTAAATGATTTA
18598518 T
1 T
18598519 AACACTTCGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.29
Consensus pattern (39 bp):
TCCATAATCTGAAAAGGAAAATCGATAGTAAATGATTTA
Found at i:18599093 original size:41 final size:41
Alignment explanation
Indices: 18599029--18599154 Score: 117
Period size: 41 Copynumber: 3.1 Consensus size: 41
18599019 AAATAATGGC
** * * *
18599029 TTTTTGTGGCGTTTTTAAAAAAAATGTCACTGTAGGTTAAT
1 TTTTTGTGGCGTTTTTCTAAAAAACGCCACTATAGGTTAAT
* * * *
18599070 TTTTTGTGGCGTTTATCTTAAAAACGCCATTATAGTTTAAT
1 TTTTTGTGGCGTTTTTCTAAAAAACGCCACTATAGGTTAAT
* * * * * *
18599111 TTTTTGCGGCATTTTTCTCAAAAACACCACTATTGCTTAAT
1 TTTTTGTGGCGTTTTTCTAAAAAACGCCACTATAGGTTAAT
18599152 TTT
1 TTT
18599155 AATTTTTTCA
Statistics
Matches: 68, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.27, C:0.13, G:0.14, T:0.45
Consensus pattern (41 bp):
TTTTTGTGGCGTTTTTCTAAAAAACGCCACTATAGGTTAAT
Found at i:18599324 original size:6 final size:7
Alignment explanation
Indices: 18599292--18599332 Score: 55
Period size: 7 Copynumber: 5.6 Consensus size: 7
18599282 AATATTAAAA
18599292 TTTTAAGT
1 TTTTAA-T
*
18599300 TCTTTATT
1 T-TTTAAT
18599308 TTTTAAT
1 TTTTAAT
18599315 TTTTAAT
1 TTTTAAT
18599322 TTTTAAT
1 TTTTAAT
18599329 TTTT
1 TTTT
18599333 TGAAGATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
7 23 0.77
8 3 0.10
9 4 0.13
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (7 bp):
TTTTAAT
Found at i:18599697 original size:25 final size:23
Alignment explanation
Indices: 18599669--18599723 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
18599659 AAATACATCA
*
18599669 AAATATTTTTATATTGAATATATAT
1 AAATATTTATATA-TGAA-ATATAT
* *
18599694 AAATATTTATGTATGCAATATAT
1 AAATATTTATATATGAAATATAT
18599717 AAATATT
1 AAATATT
18599724 AAATGATGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 13 0.48
24 3 0.11
25 11 0.41
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.47
Consensus pattern (23 bp):
AAATATTTATATATGAAATATAT
Found at i:18599839 original size:21 final size:21
Alignment explanation
Indices: 18599800--18599889 Score: 63
Period size: 21 Copynumber: 4.2 Consensus size: 21
18599790 CAATTGCACA
*
18599800 CTAAATCTTAAACCCTAAACC
1 CTAAATCATAAACCCTAAACC
** **
18599821 CTAAATCATAAACTTTAAAATA
1 CTAAATCATAAACCCT-AAACC
* * * *
18599843 GTAACTGATAAACCTTAAACC
1 CTAAATCATAAACCCTAAACC
* *
18599864 CTTAATCATATACCCTAAACC
1 CTAAATCATAAACCCTAAACC
*
18599885 GTAAA
1 CTAAA
18599890 CCGTAAACTA
Statistics
Matches: 49, Mismatches: 19, Indels: 2
0.70 0.27 0.03
Matches are distributed among these distances:
21 34 0.69
22 15 0.31
ACGTcount: A:0.46, C:0.24, G:0.03, T:0.27
Consensus pattern (21 bp):
CTAAATCATAAACCCTAAACC
Found at i:18600090 original size:15 final size:15
Alignment explanation
Indices: 18600070--18600123 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
18600060 TTGACCCCCG
18600070 ACCCATAAACCTTAA
1 ACCCATAAACCTTAA
*
18600085 ACCCATAAAGCTTAA
1 ACCCATAAACCTTAA
* *
18600100 ACCC-CAACCCTTAA
1 ACCCATAAACCTTAA
18600114 A-CCATAAACC
1 ACCCATAAACC
18600124 ATAATTCCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
13 2 0.06
14 12 0.38
15 18 0.56
ACGTcount: A:0.44, C:0.37, G:0.02, T:0.17
Consensus pattern (15 bp):
ACCCATAAACCTTAA
Found at i:18600114 original size:21 final size:21
Alignment explanation
Indices: 18600084--18600123 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
18600074 ATAAACCTTA
* *
18600084 AACCCATAAAGCTTAAACCCC
1 AACCCATAAACCATAAACCCC
*
18600105 AACCCTTAAACCATAAACC
1 AACCCATAAACCATAAACC
18600124 ATAATTCCTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.38, G:0.03, T:0.15
Consensus pattern (21 bp):
AACCCATAAACCATAAACCCC
Found at i:18600140 original size:15 final size:15
Alignment explanation
Indices: 18600116--18600151 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
18600106 ACCCTTAAAC
18600116 CATAAA-CCATAATT
1 CATAAACCCATAATT
*
18600130 CCTAAACCCATAATT
1 CATAAACCCATAATT
18600145 CATAAAC
1 CATAAAC
18600152 TTTAAAATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (15 bp):
CATAAACCCATAATT
Found at i:18600689 original size:38 final size:39
Alignment explanation
Indices: 18600644--18600732 Score: 108
Period size: 38 Copynumber: 2.3 Consensus size: 39
18600634 GACCTATAGT
* * *
18600644 GGCGTTTTTTAAAAACCGCCGCTAATGCTTGATC-TAGC
1 GGCGTTTTTCAAAAACCACCGCTAATGCTCGATCTTAGC
* * *
18600682 GGTGTTTTTCAAAAAGCATCGCTAATGCTCGATCTTTAGC
1 GGCGTTTTTCAAAAACCACCGCTAATGCTCGATC-TTAGC
18600722 GGCGTTTTTCA
1 GGCGTTTTTCA
18600733 TTAAAAAGCC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
38 28 0.67
40 14 0.33
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.35
Consensus pattern (39 bp):
GGCGTTTTTCAAAAACCACCGCTAATGCTCGATCTTAGC
Found at i:18604799 original size:31 final size:30
Alignment explanation
Indices: 18604732--18604807 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 30
18604722 TTGATGCAGC
*
18604732 TGACAAATTAGTCACTCAACTTTCGAAAAA
1 TGACAAATCAGTCACTCAACTTTCGAAAAA
* *
18604762 TAACAAATCAGTCACT-AACGTTATCGAAAAG
1 TGACAAATCAGTCACTCAAC-TT-TCGAAAAA
18604793 TGACAAATCAGTCAC
1 TGACAAATCAGTCAC
18604808 CCATTACCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 3 0.08
30 16 0.40
31 21 0.52
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.24
Consensus pattern (30 bp):
TGACAAATCAGTCACTCAACTTTCGAAAAA
Found at i:18611423 original size:2 final size:2
Alignment explanation
Indices: 18611416--18611447 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
18611406 TTTTTAAAGC
18611416 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18611448 GAGTAGAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18624011 original size:29 final size:29
Alignment explanation
Indices: 18623972--18624031 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
18623962 CTTAATTTGA
18623972 AAGGATGTTTTTGTTGAATTTTAGAGTTG
1 AAGGATGTTTTTGTTGAATTTTAGAGTTG
18624001 AAGGATGTTTTTGTTGAATTTTAGAGTTG
1 AAGGATGTTTTTGTTGAATTTTAGAGTTG
18624030 AA
1 AA
18624032 CTTTAAATAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.47
Consensus pattern (29 bp):
AAGGATGTTTTTGTTGAATTTTAGAGTTG
Found at i:18625652 original size:19 final size:20
Alignment explanation
Indices: 18625620--18625657 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
18625610 CAAATGAATA
* *
18625620 TTATCACTTTTTTTTATATG
1 TTATCACTTGTTTTAATATG
18625640 TTAT-ACTTGTTTTAATAT
1 TTATCACTTGTTTTAATAT
18625658 ATATATATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.63
Consensus pattern (20 bp):
TTATCACTTGTTTTAATATG
Found at i:18626242 original size:12 final size:12
Alignment explanation
Indices: 18626225--18626250 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18626215 TTTGCAGCAT
18626225 TGTGCTTAGTAA
1 TGTGCTTAGTAA
18626237 TGTGCTTAGTAA
1 TGTGCTTAGTAA
18626249 TG
1 TG
18626251 GGTGGACGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.27, T:0.42
Consensus pattern (12 bp):
TGTGCTTAGTAA
Found at i:18631179 original size:26 final size:26
Alignment explanation
Indices: 18631150--18631231 Score: 112
Period size: 26 Copynumber: 3.2 Consensus size: 26
18631140 TGGTACAAAT
18631150 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGAGTTAGGTAAATGTTCCA
* *
18631176 TGATAAT-AGATTAGGTAAATATTTCA
1 TGATAATGAG-TTAGGTAAATGTTCCA
* *
18631202 TGATAATGGGTTAGGCAAATGTTCCA
1 TGATAATGAGTTAGGTAAATGTTCCA
18631228 TGAT
1 TGAT
18631232 GGGCATTTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
25 2 0.04
26 45 0.94
27 1 0.02
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.35
Consensus pattern (26 bp):
TGATAATGAGTTAGGTAAATGTTCCA
Found at i:18634614 original size:7 final size:6
Alignment explanation
Indices: 18634604--18634638 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
18634594 AACAAAAAGC
*
18634604 AAAAAT AAAAAAT AAAAAT AAAAAT AAAACT AAAA
1 AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAA
18634639 TCAGTGGTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:18637487 original size:16 final size:16
Alignment explanation
Indices: 18637466--18637507 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
18637456 TTTATTCACC
18637466 GGCACTAAGCCTGCTA
1 GGCACTAAGCCTGCTA
18637482 GGCACTAAGCCTGCTA
1 GGCACTAAGCCTGCTA
*
18637498 GGCACAAAGC
1 GGCACTAAGC
18637508 TCGATCAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.29, C:0.31, G:0.26, T:0.14
Consensus pattern (16 bp):
GGCACTAAGCCTGCTA
Found at i:18640111 original size:2 final size:2
Alignment explanation
Indices: 18640104--18640143 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
18640094 TTATTATTTA
18640104 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18640144 GTAGTAGGTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.