Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 79 of 444
Found at i:18640681 original size:47 final size:47
Alignment explanation
Indices: 18640602--18640719 Score: 141
Period size: 47 Copynumber: 2.5 Consensus size: 47
18640592 GGATATTGTT
* * *
18640602 ACTGT-TACCGTTACTGTTACTATTTCGGATTTGTTCTGATGAGGTAC
1 ACTGTGTACCG-TACTGTTACTGTTTCGAATTTGTTCCGATGAGGTAC
*
18640649 TCTGTGTACCGTACTGTTACTG-TTCTGAATTTGTTCCGATGAGGTAC
1 ACTGTGTACCGTACTGTTACTGTTTC-GAATTTGTTCCGATGAGGTAC
* * *
18640696 AATGTGTACCATACTGCTACTGTT
1 ACTGTGTACCGTACTGTTACTGTT
18640720 ACTGTTACTG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
46 3 0.05
47 51 0.85
48 6 0.10
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (47 bp):
ACTGTGTACCGTACTGTTACTGTTTCGAATTTGTTCCGATGAGGTAC
Found at i:18640722 original size:6 final size:6
Alignment explanation
Indices: 18640707--18640749 Score: 77
Period size: 6 Copynumber: 7.2 Consensus size: 6
18640697 ATGTGTACCA
*
18640707 TACTGC TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT T
18640750 TTAGCTTCGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (6 bp):
TACTGT
Found at i:18640925 original size:18 final size:18
Alignment explanation
Indices: 18640859--18640932 Score: 69
Period size: 18 Copynumber: 4.1 Consensus size: 18
18640849 AACTAGAAAG
18640859 ATTGACTGTTACTGAATA
1 ATTGACTGTTACTGAATA
* * *
18640877 ATTTAATTGTTACTGTAT-
1 A-TTGACTGTTACTGAATA
* *
18640895 ATCTGATTTTTACTGAATA
1 AT-TGACTGTTACTGAATA
*
18640914 ATTGACTGTTACTGGATA
1 ATTGACTGTTACTGAATA
18640932 A
1 A
18640933 CCGATCAATT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
17 1 0.02
18 28 0.64
19 15 0.34
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (18 bp):
ATTGACTGTTACTGAATA
Found at i:18640973 original size:18 final size:18
Alignment explanation
Indices: 18640949--18640996 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
18640939 AATTGATTGA
18640949 TACTGAATAACTGATTAT
1 TACTGAATAACTGATTAT
* * *
18640967 TATTGAATAATTGATTGT
1 TACTGAATAACTGATTAT
*
18640985 TACCGAATAACT
1 TACTGAATAACT
18640997 AACTATTACC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (18 bp):
TACTGAATAACTGATTAT
Found at i:18641012 original size:36 final size:36
Alignment explanation
Indices: 18640939--18641012 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 36
18640929 ATAACCGATC
* * * ***
18640939 AATTGATTGATACTGAATAACTGATTATTATTGAAT
1 AATTGATTGATACCGAATAACTAACTATTACCAAAT
*
18640975 AATTGATTGTTACCGAATAACTAACTATTACCAAAT
1 AATTGATTGATACCGAATAACTAACTATTACCAAAT
18641011 AA
1 AA
18641013 ATAATTATTC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (36 bp):
AATTGATTGATACCGAATAACTAACTATTACCAAAT
Found at i:18655756 original size:48 final size:47
Alignment explanation
Indices: 18655616--18655783 Score: 153
Period size: 48 Copynumber: 3.5 Consensus size: 47
18655606 CCACACATCA
*
18655616 ATGCCATATCCCAGATATGGTCTTATACGAGATCTCATATC-AGTGCCG
1 ATGCCATATCCTAGATATGGTCTTATACGAGATCTCA-ATCGA-TGCCG
* * * * *
18655664 ATGCCATGTCC-AGACATGATCTTATACGAAATCACTTAAT-GATGCCG
1 ATGCCATATCCTAGATATGGTCTTATACGAGAT--CTCAATCGATGCCG
* * * *
18655711 AAGCCATATCCTTGATATGGTCTTATACGGGATCTCAACTCGATGCTG
1 ATGCCATATCCTAGATATGGTCTTATACGAGATCTCAA-TCGATGCCG
* * *
18655759 ATGCCATGTCCTAGACATGTTCTTA
1 ATGCCATATCCTAGATATGGTCTTA
18655784 CATTTGATCT
Statistics
Matches: 95, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
46 4 0.04
47 33 0.35
48 55 0.58
49 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (47 bp):
ATGCCATATCCTAGATATGGTCTTATACGAGATCTCAATCGATGCCG
Found at i:18659443 original size:6 final size:6
Alignment explanation
Indices: 18659434--18659491 Score: 116
Period size: 6 Copynumber: 9.7 Consensus size: 6
18659424 TTGTATACAA
18659434 TATATT TATATT TATATT TATATT TATATT TATATT TATATT TATATT
1 TATATT TATATT TATATT TATATT TATATT TATATT TATATT TATATT
18659482 TATATT TATA
1 TATATT TATA
18659492 GTGTCATTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 52 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TATATT
Found at i:18661417 original size:23 final size:23
Alignment explanation
Indices: 18661368--18661435 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 23
18661358 TGTTTTTTTA
* * *
18661368 TATATAATTTATTTATTTAAAAAAC
1 TATAT-ATATATTTATAT-AAATAC
18661393 TATATATATA-TTATTATAAATAC
1 TATATATATATTTA-TATAAATAC
* *
18661416 TATTTATCTATTTATATAAA
1 TATATATATATTTATATAAA
18661436 AATCTTATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
23 22 0.61
24 9 0.25
25 5 0.14
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (23 bp):
TATATATATATTTATATAAATAC
Found at i:18661765 original size:39 final size:38
Alignment explanation
Indices: 18661720--18661807 Score: 99
Period size: 38 Copynumber: 2.3 Consensus size: 38
18661710 ATTTTTATGA
*
18661720 ATTATATAGTTATTCTATAAATTCTTT-TACATATTTTTTT
1 ATTATATA-TT-TTCTAT-AATTCTTTATAAATATTTTTTT
* *
18661760 A-TATATATTTTTTATTATTCTTTCATAAATATTTTTTT
1 ATTATATATTTTCTATAATTCTTT-ATAAATATTTTTTT
18661798 ATTATATATT
1 ATTATATATT
18661808 ACATATTGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
36 7 0.17
37 5 0.12
38 15 0.36
39 14 0.33
40 1 0.02
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (38 bp):
ATTATATATTTTCTATAATTCTTTATAAATATTTTTTT
Found at i:18661769 original size:14 final size:14
Alignment explanation
Indices: 18661750--18661807 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 14
18661740 ATTCTTTTAC
18661750 ATATTTTTTTATAT
1 ATATTTTTTTATAT
18661764 ATA--TTTTT-TAT
1 ATATTTTTTTATAT
* * *
18661775 -TATTCTTTCATAA
1 ATATTTTTTTATAT
18661788 ATATTTTTTTATTAT
1 ATATTTTTTTA-TAT
18661803 ATATT
1 ATATT
18661808 ACATATTGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 9
0.69 0.12 0.19
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 8 0.24
13 2 0.06
14 11 0.33
15 7 0.21
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.67
Consensus pattern (14 bp):
ATATTTTTTTATAT
Found at i:18661812 original size:26 final size:26
Alignment explanation
Indices: 18661762--18661812 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
18661752 ATTTTTTTAT
* *
18661762 ATATATTTTTTATTATTCTTTCATAA
1 ATATATTTTTTATTATTATTACATAA
18661788 ATAT-TTTTTTATTATATATTACATA
1 ATATATTTTTTATTAT-TATTACATA
18661813 TTGTATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (26 bp):
ATATATTTTTTATTATTATTACATAA
Found at i:18664108 original size:39 final size:40
Alignment explanation
Indices: 18664044--18664255 Score: 324
Period size: 39 Copynumber: 5.4 Consensus size: 40
18664034 GATGATATCC
*
18664044 GCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGG
*
18664084 GCTAAGT-CCGAAGGCCTTTGTGCTAGTGACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGG
*
18664123 GCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGG
*
18664163 GCTAAGT-CCGAAGGCATTTGTGCTAGTGACTGTATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGG
* *
18664202 GCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGG
*
18664241 GCTAATTCCCGAAGG
1 GCTAAGTCCCGAAGG
18664256 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 87 0.55
40 69 0.44
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGG
Found at i:18664175 original size:79 final size:79
Alignment explanation
Indices: 18664044--18664255 Score: 338
Period size: 79 Copynumber: 2.7 Consensus size: 79
18664034 GATGATATCC
*
18664044 GCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCGAAGGCCTTTGTGCTA
1 GCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCGAAGGCATTTGTGCTA
18664109 GTGACTATATCCGG
66 GTGACTATATCCGG
18664123 GCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCGAAGGCATTTGTGCTA
1 GCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCGAAGGCATTTGTGCTA
*
18664188 GTGACTGTATCCGG
66 GTGACTATATCCGG
* * * *
18664202 GCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAATTCCCGAAGG
1 GCTAAGTCCCGAAGGCATTTATGCTAG-TGACTATATCCGGGCTAAGT-CCGAAGG
18664256 TACTTGGGTT
Statistics
Matches: 125, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
78 7 0.06
79 116 0.93
80 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (79 bp):
GCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCGAAGGCATTTGTGCTA
GTGACTATATCCGG
Found at i:18671955 original size:40 final size:40
Alignment explanation
Indices: 18671900--18672121 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
18671890 TATTCGGACG
* * * *
18671900 ATATCCAGTCTAAGTCCTGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
18671940 ATATCCGGGCTAAGTCCCGAAGGCCTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
18671980 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
18672020 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
18672060 GTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
18672100 ATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
18672122 TACTTGGGTT
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 14 0.08
40 151 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:18675102 original size:14 final size:15
Alignment explanation
Indices: 18675083--18675120 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
18675073 AATCTTCAAT
18675083 GATATG-CAATCTTA
1 GATATGACAATCTTA
18675097 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
18675114 GATATGA
1 GATATGA
18675121 TTGCAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:18675109 original size:17 final size:17
Alignment explanation
Indices: 18675089--18675196 Score: 97
Period size: 17 Copynumber: 6.6 Consensus size: 17
18675079 CAATGATATG
18675089 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
18675106 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
*
18675124 CAA---T--A-ATCAT-
1 CAATCTTAGATATGATA
18675134 -AATCTTAGATATGATA
1 CAATCTTAGATATGATA
18675150 TGCAATCTTAGATATGATA
1 --CAATCTTAGATATGATA
*
18675169 CAATCTTAGATATGATGG
1 CAATCTTAGATATGAT-A
18675187 CAATCTTAGA
1 CAATCTTAGA
18675197 AGATATGATT
Statistics
Matches: 75, Mismatches: 4, Indels: 23
0.74 0.04 0.23
Matches are distributed among these distances:
9 2 0.03
11 1 0.01
12 4 0.05
13 1 0.01
14 1 0.01
15 5 0.07
17 31 0.41
18 14 0.19
19 16 0.21
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:18678321 original size:40 final size:40
Alignment explanation
Indices: 18678264--18678357 Score: 134
Period size: 40 Copynumber: 2.4 Consensus size: 40
18678254 GTGTTTGAAT
* * *
18678264 GAAAAACGCCGCAAAAGAACGAGCATTAGTGGCGCTTTTC
1 GAAAAACGCCGCTAAAGAACAAACATTAGTGGCGCTTTTC
* *
18678304 GAAAAACACCGCTAAAGAATAAACATTAGTGGCGCTTTTC
1 GAAAAACGCCGCTAAAGAACAAACATTAGTGGCGCTTTTC
*
18678344 AAAAAACGCCGCTA
1 GAAAAACGCCGCTA
18678358 TAGGTTCACC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.18
Consensus pattern (40 bp):
GAAAAACGCCGCTAAAGAACAAACATTAGTGGCGCTTTTC
Found at i:18680179 original size:8 final size:8
Alignment explanation
Indices: 18680143--18680221 Score: 58
Period size: 7 Copynumber: 9.9 Consensus size: 8
18680133 TTTATATGTT
18680143 AATTTAAA
1 AATTTAAA
18680151 AATTATAAA
1 AATT-TAAA
18680160 AATCTTCAAAA
1 AAT-TT--AAA
18680171 AATTT-AA
1 AATTTAAA
*
18680178 AATCTAAA
1 AATTTAAA
18680186 AA-TTAAA
1 AATTTAAA
18680193 AA-TTAAA
1 AATTTAAA
*
18680200 AA-TAAAA
1 AATTTAAA
*
18680207 AAATTAAA
1 AATTTAAA
*
18680215 TATTTAA
1 AATTTAA
18680222 TATTTAATAT
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
7 25 0.42
8 17 0.29
9 8 0.14
10 3 0.05
11 6 0.10
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.32
Consensus pattern (8 bp):
AATTTAAA
Found at i:18680188 original size:15 final size:14
Alignment explanation
Indices: 18680168--18680214 Score: 58
Period size: 15 Copynumber: 3.2 Consensus size: 14
18680158 AAAATCTTCA
*
18680168 AAAAATTTAAAATCT
1 AAAAATTAAAAAT-T
18680183 AAAAATTAAAAATT
1 AAAAATTAAAAATT
*
18680197 AAAAATAAAAAAATT
1 AAAAAT-TAAAAATT
18680212 AAA
1 AAA
18680215 TATTTAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 7 0.24
15 22 0.76
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAAATTAAAAATT
Found at i:18680194 original size:22 final size:22
Alignment explanation
Indices: 18680168--18680221 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
18680158 AAAATCTTCA
**
18680168 AAAAATTTAAAATCTAAAAATT
1 AAAAATTTAAAATAAAAAAATT
*
18680190 AAAAATTAAAAATAAAAAAATT
1 AAAAATTTAAAATAAAAAAATT
*
18680212 AAATATTTAA
1 AAAAATTTAA
18680222 TATTTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAAATTTAAAATAAAAAAATT
Found at i:18684674 original size:55 final size:54
Alignment explanation
Indices: 18684570--18684674 Score: 122
Period size: 55 Copynumber: 1.9 Consensus size: 54
18684560 TTTATATATT
* ** *
18684570 AAATTTAAATTCATTAATTTTTATATTTATTTTTAAAGTTAAAATTTTAATAGA
1 AAATTTAAATTAATTAATTTTTATATTTATCCTTAAAGTTAAAAGTTTAATAGA
* * *
18684624 AAATTTAATTTAATTAATATTTTTTATTTATCCTTAAA-TTACATAGTTTAA
1 AAATTTAAATTAATTAAT-TTTTATATTTATCCTTAAAGTTA-AAAGTTTAA
18684675 AGTTCAAATT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
54 19 0.45
55 23 0.55
ACGTcount: A:0.41, C:0.04, G:0.03, T:0.52
Consensus pattern (54 bp):
AAATTTAAATTAATTAATTTTTATATTTATCCTTAAAGTTAAAAGTTTAATAGA
Found at i:18684885 original size:43 final size:43
Alignment explanation
Indices: 18684754--18684987 Score: 276
Period size: 43 Copynumber: 5.5 Consensus size: 43
18684744 ATAATTTTAA
* *
18684754 ATGTTCTTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGGTCT
1 ATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGG-CC
* * * * * *
18684798 AT-AT-TATAGTGGCGTTTGTGGAAAAAGCGCCGCTAAAGG-T
1 ATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGCC
* *
18684838 ATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGCC
1 ATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGCC
** *
18684881 ATGTTCTTTAGCGGTATTTTTGGGAAAAGCGCCACTAAAGGCC
1 ATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGCC
* * * *
18684924 ATGTTCTTTAGCAGCATTTTTGGGAAAAGCACCGCTAAAGGTC
1 ATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGCC
*
18684967 ATGTTCTATAGCGGCGTTTTT
1 ATGTTCTTTAGCGGCGTTTTT
18684988 TTTCATAAGC
Statistics
Matches: 162, Mismatches: 25, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
40 3 0.02
41 1 0.01
42 61 0.38
43 95 0.59
44 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
ATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGCC
Found at i:18685383 original size:36 final size:37
Alignment explanation
Indices: 18685336--18685409 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
18685326 AGATCAGAAG
18685336 TTAAAGGGGAGTTTTT-CGATTAAGGGTTCACTTGGA
1 TTAAAGGGGAGTTTTTCCGATTAAGGGTTCACTTGGA
18685372 TTAAAGGGGAGTTTTTCCGATTAAGGGTTCACTTGGA
1 TTAAAGGGGAGTTTTTCCGATTAAGGGTTCACTTGGA
18685409 T
1 T
18685410 GCTTAGAAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 16 0.43
37 21 0.57
ACGTcount: A:0.24, C:0.09, G:0.30, T:0.36
Consensus pattern (37 bp):
TTAAAGGGGAGTTTTTCCGATTAAGGGTTCACTTGGA
Found at i:18686624 original size:169 final size:169
Alignment explanation
Indices: 18686334--18686672 Score: 543
Period size: 169 Copynumber: 2.0 Consensus size: 169
18686324 GTACAGCTTT
* * * *
18686334 CAAAACGGTATTGTCTTCCCGACTGAAGGAACTCTAGGGAGTTTATGCTTAGCATGGAAGGAAGG
1 CAAAACAGTATTGTCTTCCCAACTGAAGGAACTCGAGGGAGTTTATGCTTAGCATGGAAGGAAGA
* * * *
18686399 AATTTCGATTATGTTAAGAAGCTATTCAAAAAACCATCTGAATACAATTGTTAAGGAGGAAGCTG
66 AATTTCGATTATGTTAAGAAGCTATTCAAAAAACCAACTGAATACAATTATTAAGGAAGAAGCTA
*
18686464 ATAGTTTGGAATAGAGGATGAAAGGATTTTATAAGGCCC
131 ATAGTCTGGAATAGAGGATGAAAGGATTTTATAAGGCCC
18686503 CAAAACAGTATTGTCTTCCCAACTGAAGGAACTCGAGGGAGTTTATGCTTAGCATGGAAGGAAGA
1 CAAAACAGTATTGTCTTCCCAACTGAAGGAACTCGAGGGAGTTTATGCTTAGCATGGAAGGAAGA
* * * * *
18686568 AATTTTGATTATGTTAAGAAGCTATTCAAAAAACTAAGTGAATGCGATTATTAAGGAAGAAGCTA
66 AATTTCGATTATGTTAAGAAGCTATTCAAAAAACCAACTGAATACAATTATTAAGGAAGAAGCTA
*
18686633 ATAGTCTGGAATAGAGGATGACAGGATTTTATAAGGCCC
131 ATAGTCTGGAATAGAGGATGAAAGGATTTTATAAGGCCC
18686672 C
1 C
18686673 TGAGATTCAT
Statistics
Matches: 155, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
169 155 1.00
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (169 bp):
CAAAACAGTATTGTCTTCCCAACTGAAGGAACTCGAGGGAGTTTATGCTTAGCATGGAAGGAAGA
AATTTCGATTATGTTAAGAAGCTATTCAAAAAACCAACTGAATACAATTATTAAGGAAGAAGCTA
ATAGTCTGGAATAGAGGATGAAAGGATTTTATAAGGCCC
Found at i:18692536 original size:14 final size:14
Alignment explanation
Indices: 18692517--18692546 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
18692507 TTATATAGAG
18692517 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
18692531 ACCAATCCAATTCA
1 ACCAATCCAAATCA
18692545 AC
1 AC
18692547 ATAATTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:18700268 original size:14 final size:14
Alignment explanation
Indices: 18700249--18700278 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
18700239 TTATATCGAG
18700249 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
18700263 ACCAATCCAATTCA
1 ACCAATCCAAATCA
18700277 AC
1 AC
18700279 ATATTTCAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:18703964 original size:6 final size:6
Alignment explanation
Indices: 18703953--18703978 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
18703943 GCCTTTGTAA
18703953 CTTGAG CTTGAG CTTGAG CTTGAG CT
1 CTTGAG CTTGAG CTTGAG CTTGAG CT
18703979 CTCTGCTCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.19, G:0.31, T:0.35
Consensus pattern (6 bp):
CTTGAG
Found at i:18710394 original size:21 final size:20
Alignment explanation
Indices: 18710347--18710397 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
18710337 TATATTAAGA
*
18710347 ATTTTATTAAATTATATATT
1 ATTTTAATAAATTATATATT
*
18710367 ATTTTAATAAATTATTTATT
1 ATTTTAATAAATTATATATT
18710387 ATTTTTAATAA
1 A-TTTTAATAA
18710398 TAATCTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
ATTTTAATAAATTATATATT
Found at i:18710406 original size:21 final size:19
Alignment explanation
Indices: 18710363--18710423 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 19
18710353 TTAAATTATA
*
18710363 TATTATTTTAATAAATTATT
1 TATTATTTTAAT-AATAATT
18710383 TATTATTTTTAATAATAATCT
1 TATTA-TTTTAATAATAAT-T
*
18710404 TATTAAAATTTAATAATAAT
1 TATT--ATTTTAATAATAAT
18710424 AACAATAACC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 10 0.29
21 12 0.34
22 12 0.34
23 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
TATTATTTTAATAATAATT
Found at i:18710609 original size:16 final size:16
Alignment explanation
Indices: 18710590--18710637 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
18710580 CTGATTATAA
18710590 CTCTATTTCATTACAG
1 CTCTATTTCATTACAG
18710606 CTCTA-TTCAATTACAG
1 CTCTATTTC-ATTACAG
* *
18710622 CCCTATTCCATTACAG
1 CTCTATTTCATTACAG
18710638 TGAACCAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 3 0.11
16 23 0.82
17 2 0.07
ACGTcount: A:0.27, C:0.29, G:0.06, T:0.38
Consensus pattern (16 bp):
CTCTATTTCATTACAG
Found at i:18713801 original size:27 final size:25
Alignment explanation
Indices: 18713771--18713842 Score: 63
Period size: 26 Copynumber: 2.7 Consensus size: 25
18713761 CAGTTAATAG
18713771 AATTAGGAGTTTAAATTAAATAAGGAT
1 AATTA-GAGTTTAAATTAAATAA-GAT
* **
18713798 AATTAGAGTTCTAATTTATTTAAGAT
1 AATTAGAGTT-TAAATTAAATAAGAT
* *
18713824 AATTAATACTTTAAATTAA
1 AATT-AGAGTTTAAATTAA
18713843 TAGGTTAGAT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
26 18 0.50
27 18 0.50
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.40
Consensus pattern (25 bp):
AATTAGAGTTTAAATTAAATAAGAT
Found at i:18713822 original size:92 final size:95
Alignment explanation
Indices: 18713717--18713950 Score: 242
Period size: 97 Copynumber: 2.5 Consensus size: 95
18713707 AAATTAATTT
* * *
18713717 TAATTTAGATAAGATACTTAGGAGTTTAATT-ATTGGTTAGATTTCA-GTTA-A-TAGAATTAGG
1 TAATTTAGATAAGATAATTAGGAATTTAATTAATTGGTTAGATTT-ATGTTATATTAGAATTAAG
18713778 AGTTTAAATTAAATAAGGATAATTAGAGTTC
65 AGTTTAAATTAAATAAGGATAATTAGAGTTC
** ** * * * * **
18713809 TAATTTATTTAAGATAATTAATACTTTAAATTAATAGGTTAGATAATATTTTATATTTTAATTAA
1 TAATTTAGATAAGATAATTAGGAATTT-AATTAATTGGTTAGAT-TTATGTTATATTAGAATTAA
* * * *
18713874 GATTTTGAATTAAATTAGGATAATTAGAGTTT
64 GAGTTTAAATTAAATAAGGATAATTAGAGTTC
* *
18713906 TATTTTAGATAAGATAATTAGGAATTTAATTAATTGTTTAGATTT
1 TAATTTAGATAAGATAATTAGGAATTTAATTAATTGGTTAGATTT
18713951 TAATTTAGAT
Statistics
Matches: 111, Mismatches: 25, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
92 21 0.19
93 4 0.04
94 11 0.10
95 5 0.05
96 15 0.14
97 55 0.50
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.44
Consensus pattern (95 bp):
TAATTTAGATAAGATAATTAGGAATTTAATTAATTGGTTAGATTTATGTTATATTAGAATTAAGA
GTTTAAATTAAATAAGGATAATTAGAGTTC
Found at i:18714045 original size:13 final size:13
Alignment explanation
Indices: 18714027--18714067 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
18714017 ATTTAAAATA
18714027 ATTAATAATTTAG
1 ATTAATAATTTAG
18714040 ATTAATAGA-TTA-
1 ATTAATA-ATTTAG
*
18714052 AATAATAATTTAG
1 ATTAATAATTTAG
18714065 ATT
1 ATT
18714068 TTTAATTAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
11 1 0.04
12 9 0.39
13 12 0.52
14 1 0.04
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
ATTAATAATTTAG
Found at i:18719640 original size:25 final size:25
Alignment explanation
Indices: 18719612--18719661 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
18719602 GAAAGTAATC
18719612 TCGAGTTCCAACTTGAAACTCTCCT
1 TCGAGTTCCAACTTGAAACTCTCCT
18719637 TCGAGTTCCAACTTGAAACTCTCCT
1 TCGAGTTCCAACTTGAAACTCTCCT
18719662 AGTTAGTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.32
Consensus pattern (25 bp):
TCGAGTTCCAACTTGAAACTCTCCT
Found at i:18731549 original size:2 final size:2
Alignment explanation
Indices: 18731542--18731587 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
18731532 ACAATAATAC
* *
18731542 TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18731584 TA TA
1 TA TA
18731588 ATAGAAATAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:18731955 original size:3 final size:3
Alignment explanation
Indices: 18731942--18732027 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
18731932 GAGGGCATAT
**
18731942 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GGA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A ATA ATA ATA
* *
18731989 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
18732028 AACAAAGCTC
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
2 8 0.12
3 48 0.73
4 9 0.14
5 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:18731966 original size:12 final size:12
Alignment explanation
Indices: 18731942--18732024 Score: 71
Period size: 12 Copynumber: 6.8 Consensus size: 12
18731932 GAGGGCATAT
18731942 ATAATAT-AATA
1 ATAATATAAATA
18731953 ATAATATAAATA
1 ATAATATAAATA
18731965 ATAATATATACATGA
1 ATAATATA-A-AT-A
**
18731980 GGAATA-ATAATA
1 ATAATATA-AATA
18731992 ATAATATAAATA
1 ATAATATAAATA
* *
18732004 ATAGTAAAAATA
1 ATAATATAAATA
*
18732016 ATAAAATAA
1 ATAATATAA
18732025 TAAAACAAAG
Statistics
Matches: 58, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
11 7 0.12
12 37 0.64
13 4 0.07
14 5 0.09
15 5 0.09
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:18732015 original size:27 final size:27
Alignment explanation
Indices: 18731942--18732028 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
18731932 GAGGGCATAT
* *
18731942 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* * * *
18731968 AT-ATATACAT--GAGGAATAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
18731992 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
18732019 A-AATAATAAA
1 ATAAT-ATAAA
18732029 ACAAAGCTCT
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
24 11 0.24
25 11 0.24
26 7 0.15
27 17 0.37
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:18733560 original size:21 final size:19
Alignment explanation
Indices: 18733536--18733583 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
18733526 GAGACTGTAA
18733536 ATAAATTCAAAGACAAAATAT
1 ATAAATT-AAAGA-AAAATAT
* *
18733557 ATAAATTAGATAAAAATAT
1 ATAAATTAAAGAAAAATAT
18733576 ATAAATTA
1 ATAAATTA
18733584 GATGGAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 15 0.60
20 3 0.12
21 7 0.28
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.29
Consensus pattern (19 bp):
ATAAATTAAAGAAAAATAT
Found at i:18733593 original size:19 final size:19
Alignment explanation
Indices: 18733550--18733586 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
18733540 ATTCAAAGAC
18733550 AAAATATATAAATTAGATA
1 AAAATATATAAATTAGATA
18733569 AAAATATATAAATTAGAT
1 AAAATATATAAATTAGAT
18733587 GGAAATACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
AAAATATATAAATTAGATA
Found at i:18737501 original size:309 final size:303
Alignment explanation
Indices: 18736946--18737504 Score: 700
Period size: 309 Copynumber: 1.8 Consensus size: 303
18736936 TTGGTAACCT
18736946 AGGGTAACACCAACTCAGTCAAGAGCAATAATAGTAAGTATAAAAATACAGATGATGGAAGTAAT
1 AGGGTAACACCAACTCAGTCAAGAGCAATAATAGTAAGTATAAAAATACAGATGATGGAAGTAAT
*
18737011 AAAGTATGCATAATAAAATTAAAATGTATGGAAATGTCAAAATAAAATTTTAGTTGAGTGGCAAA
66 AAAGTATGCATAATAAAATTAAAATGTAT-GAAA--T-AAAATAAAA--TTAATTGAGTGGCAAA
* * *
18737076 TTAAAAAATTTAATAATGCAATTGATTTAGGTTTAAATCTCACTATATGCATATTTTTATTTTTT
125 TTAAAAAATTTAATAATACAATTGAGTTAGATTTAAATCTCACTATATGCATATTTTTATTTTTT
*
18737141 AAAAATAAAAATACTAAAGTACCCTCAAATAATATAACTTATTTTAATTACAAAAATAATTAATT
190 AAAAATAAAAAAACTAAAGTACCCTCAAATAATATAACTTATTTTAATTACAAAAATAATTAATT
18737206 ACAAAAAGATATTTTTGTAATTTTTCTAATCAATTTGGTGATCAGGTTG
255 ACAAAAAGATATTTTTGTAATTTTTCTAATCAATTTGGTGATCAGGTTG
* * * *
18737255 AGGGTGACACCAACTTAGTTAAGAGCTTAAATAATAGTAAGTATAAATATACA-ATTGATGGAAG
1 AGGGTAACACCAACTCAGTCAAGAGC---AATAATAGTAAGTATAAAAATACAGA-TGATGGAAG
* * * *
18737319 TAATTAAGTTTGCATAAT-AAATTAAAATGTAT-AAA-AATATTAAAA-TAATTGAGTGGTAAAT
62 TAATAAAGTATGCATAATAAAATTAAAATGTATGAAATAA-AATAAAATTAATTGAGTGGCAAAT
* * * * *
18737380 TAAAGATTTTATTAATACAATT-AGTTCGATTTCAAATCTCA-TCATTTGCATATTTTTATTGAT
126 TAAAAAATTTAATAATACAATTGAGTTAGATTT-AAATCTCACT-ATATGCATA--TTT-TT-AT
* * * *
18737443 CTTTTTAATAATAAAAAAAACTAAAGTGCCTTCGAATAATATAACTTATTTTAATTACAAAA
185 -TTTTTAAAAAT-AAAAAAACTAAAGTACCCTCAAATAATATAACTTATTTTAATTACAAAA
18737505 GGGTATTTTC
Statistics
Matches: 215, Mismatches: 22, Indels: 26
0.82 0.08 0.10
Matches are distributed among these distances:
302 8 0.04
303 48 0.22
305 5 0.02
306 8 0.04
307 2 0.01
308 10 0.05
309 71 0.33
311 15 0.07
312 48 0.22
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (303 bp):
AGGGTAACACCAACTCAGTCAAGAGCAATAATAGTAAGTATAAAAATACAGATGATGGAAGTAAT
AAAGTATGCATAATAAAATTAAAATGTATGAAATAAAATAAAATTAATTGAGTGGCAAATTAAAA
AATTTAATAATACAATTGAGTTAGATTTAAATCTCACTATATGCATATTTTTATTTTTTAAAAAT
AAAAAAACTAAAGTACCCTCAAATAATATAACTTATTTTAATTACAAAAATAATTAATTACAAAA
AGATATTTTTGTAATTTTTCTAATCAATTTGGTGATCAGGTTG
Found at i:18739693 original size:19 final size:19
Alignment explanation
Indices: 18739669--18739706 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
18739659 GAAATGAATA
*
18739669 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
18739688 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
18739707 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:18740582 original size:2 final size:2
Alignment explanation
Indices: 18740575--18740604 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
18740565 TCAATTAAAT
18740575 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18740605 ATAAAGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:18741280 original size:44 final size:44
Alignment explanation
Indices: 18741215--18742464 Score: 1864
Period size: 44 Copynumber: 28.9 Consensus size: 44
18741205 CCCCGTCTAA
*
18741215 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
18741259 TACAGAGACGCCAAATATGTTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
18741303 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTTTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
18741347 TACAGAGACGCCAAATCTGTTATCTTCAATCTGCTCT-CACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
18741390 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTTCGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
18741430 TAGAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
18741474 TACAGAGACGTCAAATCTGTTATCTTCGATCTGCTCTTCGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
18741518 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
18741558 TACAGAGACGCCAAATCTATTA-CATTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATC-TTCGATCTGCTCTCCGCCGC
* * *
18741602 TATAGAGACGCCAAATCTATTA-CATTCGATCTGCTCTCCACCGC
1 TACAGAGACGCCAAATCTGTTATC-TTCGATCTGCTCTCCGCCGC
18741646 TACAGAGACGCCAAATCTGTTA-CATTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATC-TTCGATCTGCTCTCCGCCGC
*
18741690 TACAGAGACGCCAAATCTGTTATCTTCGATCTGTTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
18741734 TACAGAGATGCCAAATCTGTTATCTTCGATCTACTCTCCGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
18741778 TACAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
18741822 TACAGAGACGCCAAATCTGTTA-CATTCGATCTGCTCTCCGCTGC
1 TACAGAGACGCCAAATCTGTTATC-TTCGATCTGCTCTCCGCCGC
*
18741866 TACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
18741910 TACAGAGACGTCAAATCTGTTATCTTCGATCTGCTCTCTGCC-C
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
18741953 TACAGAGATGCCAAATC----ATTTTCGATCTGCTCTCTGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
18741993 TACAGAGAGGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
18742037 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTATCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
18742081 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
18742125 TAC-GAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
18742168 TACGGAGACTCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
18742212 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
18742256 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCC-ACGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
18742295 TACAGAGATGTCAAATCTGTTATTTTCGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
18742339 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
18742383 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
18742427 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTC
18742465 TACAGAGACG
Statistics
Matches: 1110, Mismatches: 72, Indels: 48
0.90 0.06 0.04
Matches are distributed among these distances:
39 54 0.05
40 92 0.08
43 98 0.09
44 864 0.78
45 2 0.00
ACGTcount: A:0.22, C:0.32, G:0.17, T:0.29
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:18741445 original size:171 final size:173
Alignment explanation
Indices: 18741215--18742464 Score: 1769
Period size: 171 Copynumber: 7.2 Consensus size: 173
18741205 CCCCGTCTAA
* *
18741215 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGCTACAGAGACGCCAAATATGTT
1 TACAGAGACGCCAAATC---TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
* * *
18741280 ATCTTTGATCTGCTCTCCGCCGCTACGGAGACGCCAAATCTGTTATCTTCGATCTGCTTTCCGCC
63 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* *
18741345 GCTACAGAGACGCCAAATCTGTTATCTTCAATCTGCTCT-CACCGC
128 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
18741390 TACAGAGATGCCAAATC-ATCTTCGATCTGCTCTTCGCCACTAGAGAGACGCCAAATCTGTTATC
1 TACAGAGACGCCAAATCTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATC
* * *
18741454 TTCGATCTGCTCTCCGCCGCTACAGAGACGTCAAATCTGTTATCTTCGATCTGCTCTTCGCCACT
66 TTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* *
18741519 ACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCGCCAC
131 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
18741558 TACAGAGACGCCAAATCTATTACATTCGATCTGCTCTCCGCCGCTATAGAGACGCCAAATCTATT
1 TACAGAGACGCCAAATCTA-T-C-TTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
*
18741623 A-CATTCGATCTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTA-CATTCGATCTGCTCTCCG
63 ATC-TTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATC-TTCGATCTGCTCTCCG
*
18741686 CCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGTTCTCCGCCGC
126 CCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
18741734 TACAGAGATGCCAAATCTGTTATCTTCGATCTACTCTCCGCTGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATC---TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
*
18741799 ATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGTTA-CATTCGATCTGCTCTCCGC
63 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATC-TTCGATCTGCTCTCCGC
* *
18741863 TGCTACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
127 CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
18741910 TACAGAGACGTCAAATCTGTTATCTTCGATCTGCTCTCTGCC-CTACAGAGATGCCAAATC----
1 TACAGAGACGCCAAATC---TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
* * * *
18741970 ATTTTCGATCTGCTCTCTGCCACTACAGAGAGGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
63 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* *
18742035 GCTACGGAGACGCCAAATCTGTTATCTTCGATCTGCTATCCGCCGC
128 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
18742081 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTAC-GAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATC---TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
* * *
18742145 ATCTTCGATCTGCTCTCCACCGCTACGGAGACTCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
63 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
*
18742210 GCTACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
128 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * * *
18742256 TACAGAGATGCCAAATC-ATCTTCGATCTGCTCTCC-ACGCTACAGAGATGTCAAATCTGTTATT
1 TACAGAGACGCCAAATCTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATC
* *
18742319 TTCGATCTGCTCTCCGTCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGCT
66 TTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
18742384 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
131 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
18742427 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTC
1 TACAGAGACGCCAAATC---TATCTTCGATCTGCTCTC
18742465 TACAGAGACG
Statistics
Matches: 971, Mismatches: 78, Indels: 52
0.88 0.07 0.05
Matches are distributed among these distances:
167 15 0.02
168 20 0.02
169 1 0.00
170 7 0.01
171 423 0.44
172 117 0.12
175 168 0.17
176 215 0.22
177 2 0.00
178 1 0.00
179 2 0.00
ACGTcount: A:0.22, C:0.32, G:0.17, T:0.29
Consensus pattern (173 bp):
TACAGAGACGCCAAATCTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATC
TTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:18742823 original size:61 final size:64
Alignment explanation
Indices: 18742702--18742824 Score: 182
Period size: 61 Copynumber: 2.0 Consensus size: 64
18742692 TCATGTACCC
18742702 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
* * *
18742766 ATGCTTTATGTCAAATAATTAGGATG-T-T-A-TGAAATGAATCAAATGTTCTTAACTAAATG
1 ATGC-TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATG
18742825 AATGGTTATG
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
61 28 0.51
62 1 0.02
63 1 0.02
64 5 0.09
65 20 0.36
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:18754198 original size:46 final size:46
Alignment explanation
Indices: 18754148--18754323 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
18754138 TGGTTGAGCA
18754148 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
18754194 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
18754239 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
18754287 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
18754324 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:18754304 original size:93 final size:93
Alignment explanation
Indices: 18754145--18754316 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
18754135 GGATGGTTGA
* *
18754145 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18754210 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
18754238 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18754303 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
18754317 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:18761780 original size:46 final size:46
Alignment explanation
Indices: 18761730--18761905 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
18761720 TGGTTGAGCA
18761730 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
18761776 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
18761821 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
18761869 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
18761906 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:18761886 original size:93 final size:93
Alignment explanation
Indices: 18761727--18761898 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
18761717 GGATGGTTGA
* *
18761727 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18761792 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
18761820 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18761885 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
18761899 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:18766939 original size:134 final size:133
Alignment explanation
Indices: 18766716--18766968 Score: 470
Period size: 134 Copynumber: 1.9 Consensus size: 133
18766706 TGGTGATTCC
18766716 ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
*
18766781 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCGTGTTGCTCACGTTTTATATAATAAAGTTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTCTCGTGTTGCTCACGTTTTATATAATAAAGTTGT
18766846 TAT
131 TAT
*
18766849 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTTCATGTTTCTATCCAACTTATGTGTTTAGT
1 ATTTTGGTTATTTAGATGTTATTTTGGTCTG-TTTTCATGTTTCTATCCAACTTATGTGTTTAGT
*
18766914 GTGGACTTAGATTGATTTAAGAGTTTATTGCTCTCTTGTTGCTCACGTTTTATAT
65 GTGGACTTAGATTGATTTAAGAGTTTATTGCTCTCGTGTTGCTCACGTTTTATAT
18766969 TGTTGAATTC
Statistics
Matches: 116, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
133 30 0.26
134 86 0.74
ACGTcount: A:0.19, C:0.10, G:0.19, T:0.51
Consensus pattern (133 bp):
ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
TGGACTTAGATTGATTTAAGAGTTTATTGCTCTCGTGTTGCTCACGTTTTATATAATAAAGTTGT
TAT
Found at i:18768751 original size:21 final size:21
Alignment explanation
Indices: 18768722--18768761 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
18768712 GTTTTTATAT
*
18768722 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
18768743 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
18768762 GAATTAGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:18770446 original size:24 final size:24
Alignment explanation
Indices: 18770419--18770486 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
18770409 ATTATTATTG
*
18770419 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTTTCGTCCGTTTTATCAC
*
18770443 AAATATTATTC-TCCGTTTTATTAC
1 AAATATT-TTCGTCCGTTTTATCAC
18770467 AAATATTTTCGTCCGTTTTA
1 AAATATTTTCGTCCGTTTTA
18770487 CCATTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 3 0.08
24 35 0.88
25 2 0.05
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.47
Consensus pattern (24 bp):
AAATATTTTCGTCCGTTTTATCAC
Found at i:18770576 original size:9 final size:9
Alignment explanation
Indices: 18770564--18770779 Score: 132
Period size: 9 Copynumber: 23.4 Consensus size: 9
18770554 CATAATTTAC
18770564 ATAACTTAT
1 ATAACTTAT
*
18770573 ATAACATAT
1 ATAACTTAT
*
18770582 ATAACTTAC
1 ATAACTTAT
18770591 ATAACTTAT
1 ATAACTTAT
* *
18770600 ATAACATAC
1 ATAACTTAT
18770609 ATAACTTAT
1 ATAACTTAT
18770618 ATAACTTAT
1 ATAACTTAT
*
18770627 ATAACTTAG
1 ATAACTTAT
*
18770636 ATAA-ATAT
1 ATAACTTAT
*
18770644 ATAACTTAC
1 ATAACTTAT
*
18770653 ATAACTTAC
1 ATAACTTAT
18770662 ATAATACTTAAAT
1 AT-A-ACTT--AT
**
18770675 ATATTTTATAT
1 ATA-ACT-TAT
* *
18770686 CATAATTTAC
1 -ATAACTTAT
*
18770696 ATAACTTAC
1 ATAACTTAT
18770705 ATAACTTAT
1 ATAACTTAT
*
18770714 ATAACTTAG
1 ATAACTTAT
*
18770723 ATAA-ATAT
1 ATAACTTAT
* *
18770731 ATAATTTAC
1 ATAACTTAT
*
18770740 ATAA-ATAT
1 ATAACTTAT
* *
18770748 ATATCATAT
1 ATAACTTAT
* *
18770757 CATAAATTAC
1 -ATAACTTAT
*
18770767 ATAACTTAC
1 ATAACTTAT
18770776 ATAA
1 ATAA
18770780 TACTTAAATA
Statistics
Matches: 164, Mismatches: 33, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
8 17 0.10
9 121 0.74
10 8 0.05
11 8 0.05
12 6 0.04
13 4 0.02
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.38
Consensus pattern (9 bp):
ATAACTTAT
Found at i:18770767 original size:114 final size:114
Alignment explanation
Indices: 18770582--18770803 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
18770572 TATAACATAT
* * *
18770582 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATAAATATATA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
* * *
18770647 ACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
18770696 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATATATCATATCA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATA-AATAT-A
18770759 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
18770804 CATAACTAGT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 72 0.76
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.39
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:18776879 original size:25 final size:25
Alignment explanation
Indices: 18776836--18776883 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
18776826 TTATAATATG
** *
18776836 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATCATACCCCTAGGTA
18776861 AAAATGACCATCATACCCCTAGG
1 AAAATGACCATCATACCCCTAGG
18776884 GTAATGCATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (25 bp):
AAAATGACCATCATACCCCTAGGTA
Found at i:18776920 original size:9 final size:9
Alignment explanation
Indices: 18776908--18776964 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
18776898 TTTGATAAAC
18776908 ATGATATGT
1 ATGATATGT
*
18776917 ATGATATGCAC
1 ATGATATG--T
*
18776928 ATGACATGT
1 ATGATATGT
*
18776937 ATGATATGCAC
1 ATGATATG--T
18776948 ATGATATGT
1 ATGATATGT
18776957 ATGATATG
1 ATGATATG
18776965 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:18776931 original size:20 final size:20
Alignment explanation
Indices: 18776906--18776976 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
18776896 ATTTTGATAA
18776906 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18776926 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18776946 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18776966 ACATGAGATGT
1 ACATGATATGT
18776977 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:18776953 original size:11 final size:11
Alignment explanation
Indices: 18776917--18776971 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
18776907 CATGATATGT
18776917 ATGATATGCAC
1 ATGATATGCAC
* *
18776928 ATGACATG--T
1 ATGATATGCAC
18776937 ATGATATGCAC
1 ATGATATGCAC
*
18776948 ATGATATG--T
1 ATGATATGCAC
18776957 ATGATATGCAC
1 ATGATATGCAC
18776968 ATGA
1 ATGA
18776972 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:18777053 original size:23 final size:23
Alignment explanation
Indices: 18777023--18777164 Score: 230
Period size: 23 Copynumber: 6.1 Consensus size: 23
18777013 AGGAAGTGCA
18777023 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
18777046 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
18777070 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* * *
18777093 AAAGGGCTCACGCCCCAGTTATC
1 AAAGGGCTTATGCCCCAGTTATT
18777116 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
18777139 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
18777162 AAA
1 AAA
18777165 AGAGGCTAGG
Statistics
Matches: 109, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
23 87 0.80
24 22 0.20
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:18777137 original size:46 final size:47
Alignment explanation
Indices: 18777021--18777185 Score: 253
Period size: 47 Copynumber: 3.5 Consensus size: 47
18777011 GGAGGAAGTG
18777021 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
18777068 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTCACGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
18777115 C-AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
18777161 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
18777186 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
46 42 0.39
47 55 0.51
48 11 0.10
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:18783400 original size:25 final size:25
Alignment explanation
Indices: 18783357--18783404 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
18783347 TTATAATATG
** *
18783357 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATCATACCCCTAGGTA
18783382 AAAATGACCATCATACCCCTAGG
1 AAAATGACCATCATACCCCTAGG
18783405 GTAATGCATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (25 bp):
AAAATGACCATCATACCCCTAGGTA
Found at i:18783441 original size:9 final size:9
Alignment explanation
Indices: 18783429--18783485 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
18783419 TTTGATAAAC
18783429 ATGATATGT
1 ATGATATGT
*
18783438 ATGATATGCAC
1 ATGATATG--T
*
18783449 ATGACATGT
1 ATGATATGT
*
18783458 ATGATATGCAC
1 ATGATATG--T
18783469 ATGATATGT
1 ATGATATGT
18783478 ATGATATG
1 ATGATATG
18783486 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:18783452 original size:20 final size:20
Alignment explanation
Indices: 18783427--18783497 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
18783417 ATTTTGATAA
18783427 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18783447 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18783467 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18783487 ACATGAGATGT
1 ACATGATATGT
18783498 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:18783474 original size:11 final size:11
Alignment explanation
Indices: 18783438--18783492 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
18783428 CATGATATGT
18783438 ATGATATGCAC
1 ATGATATGCAC
* *
18783449 ATGACATG--T
1 ATGATATGCAC
18783458 ATGATATGCAC
1 ATGATATGCAC
*
18783469 ATGATATG--T
1 ATGATATGCAC
18783478 ATGATATGCAC
1 ATGATATGCAC
18783489 ATGA
1 ATGA
18783493 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:18783599 original size:24 final size:24
Alignment explanation
Indices: 18783542--18783708 Score: 225
Period size: 24 Copynumber: 7.0 Consensus size: 24
18783532 GGAGGAAGTG
18783542 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
18783566 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
18783589 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
18783613 -TAAAGGGCTTACGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
18783636 CAAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
*
18783661 C-AAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
18783684 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
18783709 ATGATAAAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
23 44 0.35
24 70 0.55
25 13 0.10
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:18783611 original size:47 final size:47
Alignment explanation
Indices: 18783542--18783708 Score: 264
Period size: 47 Copynumber: 3.5 Consensus size: 47
18783532 GGAGGAAGTG
18783542 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
18783589 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTACGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
18783636 CAAAAGGGCTTATGCCCCAGTTATTCAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTAT
* *
18783684 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
18783709 ATGATAAAGC
Statistics
Matches: 112, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
47 71 0.63
48 30 0.27
49 11 0.10
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:18785991 original size:21 final size:21
Alignment explanation
Indices: 18785958--18786008 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
18785948 ACAACTTAGA
*
18785958 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
18785979 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
18786000 GCAGAGGCA
1 GCAGAGGCA
18786009 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:18786298 original size:31 final size:31
Alignment explanation
Indices: 18786263--18786329 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
18786253 TGGTTGTATT
* *
18786263 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
18786294 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
18786325 TTTTA
1 TTTTA
18786330 ATACAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:18786429 original size:43 final size:42
Alignment explanation
Indices: 18786380--18786601 Score: 329
Period size: 43 Copynumber: 5.1 Consensus size: 42
18786370 ATCTGCCAAA
* *
18786380 TTTAGCGGCG-TTTGTAAAAAAAGCGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTT-TACACAAA-CGCCGCTAAAAGCCTTGACC
*
18786423 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAAGCCTTGACC
1 TTTAGCGGCGCTTTT-ACACAAACGCCGCT-AAAAGCCTTGACC
18786467 TTTAGCGGCGCTTTTACCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTTTA-CACAAACGCCGCTAAAAGCCTTGACC
*
18786510 TTTAGCGGCGTTTTTACCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTTTA-CACAAACGCCGCTAAAAGCCTTGACC
*
18786553 TTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTTTAC-ACAAACGCCGCTAAAAGCCTTGACC
18786596 TTTAGC
1 TTTAGC
18786602 AGCATTTTTT
Statistics
Matches: 167, Mismatches: 7, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
42 1 0.01
43 118 0.71
44 48 0.29
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (42 bp):
TTTAGCGGCGCTTTTACACAAACGCCGCTAAAAGCCTTGACC
Found at i:18792849 original size:21 final size:20
Alignment explanation
Indices: 18792838--18792887 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
18792828 ATTTCTATTG
18792838 TTTTA-ATTTTTATTTTAAT
1 TTTTATATTTTTATTTTAAT
*
18792857 TTTTATATTTTTTAATTTAAT
1 TTTTATA-TTTTTATTTTAAT
*
18792878 TTTTACATTT
1 TTTTATATTT
18792888 AATTTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 5 0.19
20 4 0.15
21 18 0.67
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTTATATTTTTATTTTAAT
Found at i:18792855 original size:12 final size:12
Alignment explanation
Indices: 18792838--18792898 Score: 58
Period size: 12 Copynumber: 5.3 Consensus size: 12
18792828 ATTTCTATTG
18792838 TTTTAATTTTTA
1 TTTTAATTTTTA
18792850 TTTTAATTTTTA
1 TTTTAATTTTTA
*
18792862 ---TATTTTTTA
1 TTTTAATTTTTA
*
18792871 ATTTAATTTTTA
1 TTTTAATTTTTA
*
18792883 CATTTAATTTTT-
1 -TTTTAATTTTTA
18792895 TTTT
1 TTTT
18792899 GTTTGATTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
9 8 0.19
11 3 0.07
12 20 0.48
13 11 0.26
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTAATTTTTA
Found at i:18792879 original size:13 final size:14
Alignment explanation
Indices: 18792858--18792895 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
18792848 TATTTTAATT
18792858 TTTATATTTTTTA-A
1 TTTA-ATTTTTTACA
18792872 TTTAA-TTTTTACA
1 TTTAATTTTTTACA
18792885 TTTAATTTTTT
1 TTTAATTTTTT
18792896 TTTGTTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 6 0.27
13 7 0.32
14 9 0.41
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTAATTTTTTACA
Found at i:18794338 original size:17 final size:20
Alignment explanation
Indices: 18794311--18794351 Score: 61
Period size: 17 Copynumber: 2.2 Consensus size: 20
18794301 ATGCATCTAA
18794311 AATAGAAACAAAA-TTA-AC
1 AATAGAAACAAAAGTTATAC
18794329 AATA-AAACAAAAGTTATAC
1 AATAGAAACAAAAGTTATAC
18794348 AATA
1 AATA
18794352 TTTGTAACTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.38
18 7 0.33
19 6 0.29
ACGTcount: A:0.66, C:0.10, G:0.05, T:0.20
Consensus pattern (20 bp):
AATAGAAACAAAAGTTATAC
Found at i:18795445 original size:18 final size:17
Alignment explanation
Indices: 18795412--18795446 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
18795402 CCATTTAGGC
*
18795412 CGTGTGGGCTACACGGA
1 CGTGTGGGCAACACGGA
18795429 CGTGTGGGCCAACACGGA
1 CGTGTGGG-CAACACGGA
18795447 AGAATCACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.20, C:0.26, G:0.40, T:0.14
Consensus pattern (17 bp):
CGTGTGGGCAACACGGA
Found at i:18797671 original size:27 final size:26
Alignment explanation
Indices: 18797633--18797774 Score: 151
Period size: 27 Copynumber: 5.3 Consensus size: 26
18797623 AGCATGGCTG
* *
18797633 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
18797659 TCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
18797687 CCAGAACAGATATATGTGGCAGAGCTA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
18797714 CCA-AATCAGATATTTGTGGCAGAGCCA
1 CCAGAA-CAGATA-ATGTGGCAGAGCCA
* * *
18797741 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
18797768 CCAGAAC
1 CCAGAAC
18797775 GCTTCCTCCA
Statistics
Matches: 101, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.06
27 78 0.77
28 17 0.17
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:18797759 original size:54 final size:54
Alignment explanation
Indices: 18797633--18797770 Score: 170
Period size: 54 Copynumber: 2.6 Consensus size: 54
18797623 AGCATGGCTG
* * * *
18797633 CCAGAACAGATA-ATGTGACAGAGTCATCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAAAT-CAGATAATCGTGGCAGAGCCA
* * *
18797687 CCAGAACAGATATATGTGGCAGAGCTACCAAATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAAATCAGATAATCGTGGCAGAGCCA
* * *
18797741 CCAGATCAGATATTTGTGGCATAGCCACCA
1 CCAGAACAGATATATGTGGCAGAGCCACCA
18797771 GAACGCTTCC
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 57 0.79
55 15 0.21
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAAATCAGATAATCGTGGCAGAGCCA
Found at i:18797904 original size:26 final size:27
Alignment explanation
Indices: 18797875--18797950 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
18797865 CAAAATTAAC
* *
18797875 CCTAGGGGTATAATGGTAATTTTGC-A
1 CCTAGGGGTATAATAGTAATTTTCCAA
*
18797901 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAATAGTAATTTTCCA-A
* *
18797929 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAATAGTAATTT
18797951 AGCTACTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 22 0.52
28 20 0.48
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (27 bp):
CCTAGGGGTATAATAGTAATTTTCCAA
Found at i:18799426 original size:26 final size:26
Alignment explanation
Indices: 18799390--18799499 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
18799380 CATGAAATTC
18799390 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
18799416 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
18799442 TTACCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
18799468 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
18799494 TTATCA
1 TTATCA
18799500 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 77 0.97
27 2 0.03
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:18800789 original size:5 final size:5
Alignment explanation
Indices: 18800779--18800904 Score: 243
Period size: 5 Copynumber: 25.2 Consensus size: 5
18800769 GAAATACTTA
18800779 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
18800829 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
*
18800879 ATATT ATATT GTATT ATATT ATATT A
1 ATATT ATATT ATATT ATATT ATATT A
18800905 ATAATAATAA
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 119 1.00
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.60
Consensus pattern (5 bp):
ATATT
Found at i:18803326 original size:23 final size:23
Alignment explanation
Indices: 18803300--18803349 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
18803290 CCTACACGTT
*
18803300 ATGGTTTAATCCGGAGATGACAC
1 ATGGTCTAATCCGGAGATGACAC
18803323 ATGGTCTAATCCGGAGATGACAC
1 ATGGTCTAATCCGGAGATGACAC
18803346 ATGG
1 ATGG
18803350 AAAGATTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (23 bp):
ATGGTCTAATCCGGAGATGACAC
Found at i:18804871 original size:16 final size:17
Alignment explanation
Indices: 18804840--18804872 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
18804830 CAACAGAATT
18804840 CATCAATTACTCATCAC
1 CATCAATTACTCATCAC
*
18804857 CATCGATTA-TCATCAC
1 CATCAATTACTCATCAC
18804873 AATACCCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (17 bp):
CATCAATTACTCATCAC
Found at i:18818640 original size:19 final size:19
Alignment explanation
Indices: 18818613--18818653 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
18818603 GAATCTCATC
*
18818613 TTCTTTTTTCCTGTTTTTT
1 TTCTATTTTCCTGTTTTTT
* *
18818632 TTCTATTTTCTTTTTTTTT
1 TTCTATTTTCCTGTTTTTT
18818651 TTC
1 TTC
18818654 AAATATGTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.80
Consensus pattern (19 bp):
TTCTATTTTCCTGTTTTTT
Found at i:18819490 original size:3 final size:3
Alignment explanation
Indices: 18819482--18819547 Score: 125
Period size: 3 Copynumber: 22.3 Consensus size: 3
18819472 ATTTTTAAAA
18819482 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
18819530 TAT TAT TAT TAT T-T TAT T
1 TAT TAT TAT TAT TAT TAT T
18819548 TATTTAGTTT
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 60 0.97
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:18819771 original size:2 final size:2
Alignment explanation
Indices: 18819764--18819797 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
18819754 TTAAATTGTT
*
18819764 TA TA TA TA TA TA TA TA TA TA TA TA T- TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
18819798 TATTCATTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (2 bp):
TA
Found at i:18824354 original size:9 final size:9
Alignment explanation
Indices: 18824340--18824365 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
18824330 CCTAAGTGTG
18824340 TTTTATTTA
1 TTTTATTTA
18824349 TTTTATTTA
1 TTTTATTTA
18824358 TTTTATTT
1 TTTTATTT
18824366 TAATTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTATTTA
Found at i:18824364 original size:14 final size:14
Alignment explanation
Indices: 18824341--18824375 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
18824331 CTAAGTGTGT
18824341 TTTA-TTTATTTTA
1 TTTATTTTATTTTA
18824354 TTTATTTTATTTTA
1 TTTATTTTATTTTA
*
18824368 ATTATTTT
1 TTTATTTT
18824376 GCGTGTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:18824442 original size:22 final size:20
Alignment explanation
Indices: 18824414--18824461 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
18824404 ACTGAAAAAG
*
18824414 AAAAAAATAAAAAAATTTTGAA
1 AAAAAAAGAAAAAAA--TTGAA
*
18824436 AAAAAAAGAAAACAATTGAA
1 AAAAAAAGAAAAAAATTGAA
18824456 AAAAAA
1 AAAAAA
18824462 TGGTTCCCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 11 0.46
22 13 0.54
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAAAAAAGAAAAAAATTGAA
Found at i:18824447 original size:20 final size:19
Alignment explanation
Indices: 18824413--18824461 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
18824403 TACTGAAAAA
*
18824413 GAAAAAAATAAAAAA-ATTTT
1 GAAAAAAA-AAAAAACA-ATT
18824433 GAAAAAAAAAGAAAACAATT
1 GAAAAAAAAA-AAAACAATT
18824453 GAAAAAAAA
1 GAAAAAAAA
18824462 TGGTTCCCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 2 0.08
20 23 0.88
21 1 0.04
ACGTcount: A:0.76, C:0.02, G:0.08, T:0.14
Consensus pattern (19 bp):
GAAAAAAAAAAAAACAATT
Found at i:18826435 original size:21 final size:20
Alignment explanation
Indices: 18826402--18826443 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
18826392 ATTTAAATGT
18826402 AAAATTTAAATTAAAA-CAA
1 AAAATTTAAATTAAAATCAA
18826421 AAAATGTTAAAATTAAAATCAA
1 AAAAT-TT-AAATTAAAATCAA
18826443 A
1 A
18826444 TTGACTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 2 0.10
21 9 0.45
22 4 0.20
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (20 bp):
AAAATTTAAATTAAAATCAA
Found at i:18828033 original size:21 final size:19
Alignment explanation
Indices: 18828007--18828045 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 19
18827997 TTATATAACT
18828007 TAATTAATTTATAATTAATCC
1 TAATTAA-TT-TAATTAATCC
18828028 TAATTAATTTAATTAATC
1 TAATTAATTTAATTAATC
18828046 AATAACTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATTAATTTAATTAATCC
Found at i:18828058 original size:19 final size:19
Alignment explanation
Indices: 18828018--18828056 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
18828008 AATTAATTTA
* *
18828018 TAATTAATCCTAATTAATT
1 TAATTAATCATAACTAATT
18828037 TAATTAATCAATAACTAATT
1 TAATTAATC-ATAACTAATT
18828057 AACATTAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (19 bp):
TAATTAATCATAACTAATT
Found at i:18830256 original size:39 final size:44
Alignment explanation
Indices: 18830196--18830298 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 44
18830186 TACACATTTC
*
18830196 TATAGTAATTAAAATTATAAAAAT-TATTTT-AAAA-AATA-T-A
1 TATA-TAATTAAAATTTTAAAAATATATTTTCAAAATAATATTAA
18830236 TATATAATTAAAATTTT-AAAATATATTTTCAAAATAATATTAA
1 TATATAATTAAAATTTTAAAAATATATTTTCAAAATAATATTAA
18830279 TATATAA-T-AAATTTTAAAAA
1 TATATAATTAAAATTTTAAAAA
18830299 ATAAATGAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
38 5 0.09
39 18 0.32
40 8 0.14
41 11 0.20
42 6 0.11
43 8 0.14
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (44 bp):
TATATAATTAAAATTTTAAAAATATATTTTCAAAATAATATTAA
Found at i:18830508 original size:17 final size:17
Alignment explanation
Indices: 18830488--18830521 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
18830478 AATATCTTAC
*
18830488 TTTAATTAAAATAAAAT
1 TTTAATAAAAATAAAAT
18830505 TTTAATAAAAATAAAAT
1 TTTAATAAAAATAAAAT
18830522 GCGAATGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTTAATAAAAATAAAAT
Found at i:18831768 original size:7 final size:7
Alignment explanation
Indices: 18831756--18831785 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
18831746 TTGGATTTTG
18831756 AAAATTT
1 AAAATTT
18831763 AAAATTT
1 AAAATTT
18831770 AAAATTT
1 AAAATTT
18831777 AAAATTT
1 AAAATTT
18831784 AA
1 AA
18831786 TTTTTATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AAAATTT
Found at i:18831791 original size:14 final size:14
Alignment explanation
Indices: 18831760--18831814 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
18831750 ATTTTGAAAA
**
18831760 TTTAAAATTTAAAA
1 TTTAAAATTTAATT
18831774 TTTAAAATTTAATT
1 TTTAAAATTTAATT
* * *
18831788 TTTATATTTTTATT
1 TTTAAAATTTAATT
18831802 TTTAGAAATTTAA
1 TTTA-AAATTTAA
18831815 ATTATTTATT
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
14 27 0.84
15 5 0.16
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (14 bp):
TTTAAAATTTAATT
Found at i:18831843 original size:30 final size:30
Alignment explanation
Indices: 18831777--18831845 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
18831767 TTTAAAATTT
* *
18831777 AAAATTT-AATTTTTATATTTTTATTTTTA
1 AAAATTTAAATTATTATATTTTTATTTTAA
* *
18831806 GAAATTTAAATTATT-TATTTTTCTTTCTAA
1 AAAATTTAAATTATTATATTTTTATTT-TAA
18831836 AAAATTTAAA
1 AAAATTTAAA
18831846 ATTCATATCA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (30 bp):
AAAATTTAAATTATTATATTTTTATTTTAA
Found at i:18834883 original size:23 final size:23
Alignment explanation
Indices: 18834857--18834901 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
18834847 TTATTTAATT
18834857 GATTT-AGGATTAGGATTTTTTAG
1 GATTTAAGG-TTAGGATTTTTTAG
*
18834880 GATTTAAGGTTAGGGTTTTTTA
1 GATTTAAGGTTAGGATTTTTTA
18834902 AGTTAAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (23 bp):
GATTTAAGGTTAGGATTTTTTAG
Found at i:18834911 original size:15 final size:16
Alignment explanation
Indices: 18834882--18834921 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
18834872 TTTTTTAGGA
*
18834882 TTTAAGGTTAGGGTTT
1 TTTAAGGTTAAGGTTT
18834898 TTTAA-GTTAAGGTTT
1 TTTAAGGTTAAGGTTT
*
18834913 TTTAGGGTT
1 TTTAAGGTT
18834922 TTAAGGTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.20, C:0.00, G:0.28, T:0.53
Consensus pattern (16 bp):
TTTAAGGTTAAGGTTT
Found at i:18835071 original size:38 final size:39
Alignment explanation
Indices: 18835008--18835086 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 39
18834998 TAAATTAGAG
18835008 TTTAGGGTATTAGGGTTAATCGATTAAA-TTAGGGATTAA
1 TTTAGGGTATTAGGGTTAATCGATTAAATTTAGGG-TTAA
* *
18835047 TTTAGGGT-TTAGGGTTGATTGATTAAATTTAGGGTTAA
1 TTTAGGGTATTAGGGTTAATCGATTAAATTTAGGGTTAA
18835085 TT
1 TT
18835087 GATACATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
38 23 0.62
39 14 0.38
ACGTcount: A:0.29, C:0.01, G:0.27, T:0.43
Consensus pattern (39 bp):
TTTAGGGTATTAGGGTTAATCGATTAAATTTAGGGTTAA
Found at i:18836030 original size:127 final size:126
Alignment explanation
Indices: 18835633--18836139 Score: 712
Period size: 125 Copynumber: 4.0 Consensus size: 126
18835623 TTTCTGCAAG
* * * *
18835633 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCCGAAAAAAGCTTCAAGTAGGATGCACTGT
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCG-AAAACGCTTCAAGCAGGATGCACTGT
* * * * *
18835698 CAGCAAAATTTCTAGAAAAAGCTCCCACATGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
65 CAGCAAAATTTCAAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAAAAA
*
18835760 AATAATTCTGAGTAGACGTTTCTGAACAAATAATGTCGAAAACGCTTCAAGCA-GATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
* * * * * *
18835824 AGCAAATTTTCGAAAAAAAGCTCCTACGTGGACGCTCTTTTGCTACGGTAGTTTGTAGAAA
66 AGCAAAATTTCAAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAAAAA
* * * *
18835885 AATAATTTTGAGTAGACGTTTTTGAACAAATAGTGTCGAAAATGCTTCAAGCAGGATGCATTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
* * *
18835950 AGCAAAATTTCAAAAAAAAAACTCCCACGTGGACTCTCTTTTGCTACAGTAATTCGTAAAAA
66 AGCAAAATTTC-AAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAAAAA
* *
18836012 AACAATTCTGAGTAGACGTTTCTGAACAAATAGTGTC-AAAACGCTTCAAGTAGGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
* * * * *
18836076 AGGAAAATTTTAGAAAAAAGCTCCCACGTGGATGTTCTTTTGCTACAGTAGTTCGTAAAAA
66 AGCAAAATTTCAAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAAAAA
18836137 AAT
1 AAT
18836140 GAGGCTATAA
Statistics
Matches: 336, Mismatches: 42, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
125 159 0.47
126 66 0.20
127 111 0.33
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (126 bp):
AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCAAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAAAAA
Found at i:18836095 original size:252 final size:252
Alignment explanation
Indices: 18835633--18836139 Score: 732
Period size: 252 Copynumber: 2.0 Consensus size: 252
18835623 TTTCTGCAAG
*
18835633 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCCGAAAAAAGCTTCAAGTAGGATGCACTGT
1 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCCGAAAAAAGCTTCAAGCAGGATGCACTGT
* * * * * *
18835698 CAGCAAAATTTCTAGAAAAAGCTCCCACATGAACGCTCTTTTGCTACAGTAGTTCGTAGAAAAAT
66 CAGCAAAATTTCAAAAAAAAACTCCCACATGAACGCTCTTTTGCTACAGTAATTCGTAAAAAAAC
*
18835763 AATTCTGAGTAGACGTTTCTGAACAAATAATGTCGAAAACGCTTCAAGCAGATGCACTGTCAGCA
131 AATTCTGAGTAGACGTTTCTGAACAAATAATGTCGAAAACGCTTCAAGCAGATGCACTGTCAGAA
* * * * *
18835828 AATTTTCGAAAAAAAGCTCCTACGTGGACGCTCTTTTGCTACGGTAGTTTGTAGAAA
196 AATTTTAGAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAAAAA
* * * * * *
18835885 AATAATTTTGAGTAGACGTTTTTGAACAAATAGTGTCG-AAAATGCTTCAAGCAGGATGCATTGT
1 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCCGAAAAAAGCTTCAAGCAGGATGCACTGT
* * *
18835949 CAGCAAAATTTCAAAAAAAAAACTCCCACGTGGACTCTCTTTTGCTACAGTAATTCGTAAAAAAA
66 CAGCAAAATTTC-AAAAAAAAACTCCCACATGAACGCTCTTTTGCTACAGTAATTCGTAAAAAAA
* *
18836014 CAATTCTGAGTAGACGTTTCTGAACAAATAGTGTC-AAAACGCTTCAAGTAGGATGCACTGTCAG
130 CAATTCTGAGTAGACGTTTCTGAACAAATAATGTCGAAAACGCTTCAAGCA-GATGCACTGTCA-
* *
18836078 GAAAATTTTAG-AAAAAAGCTCCCACGTGGATGTTCTTTTGCTACAGTAGTTCGTAAAAA
193 GAAAATTTTAGAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAAAAA
18836137 AAT
1 AAT
18836140 GAGGCTATAA
Statistics
Matches: 226, Mismatches: 26, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
251 49 0.22
252 168 0.74
253 9 0.04
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (252 bp):
AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCCGAAAAAAGCTTCAAGCAGGATGCACTGT
CAGCAAAATTTCAAAAAAAAACTCCCACATGAACGCTCTTTTGCTACAGTAATTCGTAAAAAAAC
AATTCTGAGTAGACGTTTCTGAACAAATAATGTCGAAAACGCTTCAAGCAGATGCACTGTCAGAA
AATTTTAGAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAAAAA
Found at i:18838299 original size:31 final size:31
Alignment explanation
Indices: 18838264--18838359 Score: 192
Period size: 31 Copynumber: 3.1 Consensus size: 31
18838254 GTACCAACAA
18838264 ACTTGTTTTCCAATTATCAAAGATTTGAAAC
1 ACTTGTTTTCCAATTATCAAAGATTTGAAAC
18838295 ACTTGTTTTCCAATTATCAAAGATTTGAAAC
1 ACTTGTTTTCCAATTATCAAAGATTTGAAAC
18838326 ACTTGTTTTCCAATTATCAAAGATTTGAAAC
1 ACTTGTTTTCCAATTATCAAAGATTTGAAAC
18838357 ACT
1 ACT
18838360 CAATTAAGAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 65 1.00
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (31 bp):
ACTTGTTTTCCAATTATCAAAGATTTGAAAC
Found at i:18838808 original size:19 final size:18
Alignment explanation
Indices: 18838784--18838867 Score: 75
Period size: 18 Copynumber: 4.6 Consensus size: 18
18838774 AATGAGCATA
*
18838784 TTAATTTTTAAAGTTTTAT
1 TTAATTTTT-AAGTTTTTT
18838803 TTAATTTTTAA-TTTATTT
1 TTAATTTTTAAGTTT-TTT
* *
18838821 TTATTTTTTGAATTTTTTT
1 TTAATTTTT-AAGTTTTTT
*
18838840 TTAA-TTTTATG-TTTTT
1 TTAATTTTTAAGTTTTTT
18838856 TTAATTTATTAA
1 TTAATTT-TTAA
18838868 AACTTTTTCC
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
16 9 0.17
17 6 0.11
18 19 0.35
19 17 0.31
20 3 0.06
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (18 bp):
TTAATTTTTAAGTTTTTT
Found at i:18838827 original size:16 final size:15
Alignment explanation
Indices: 18838807--18838865 Score: 59
Period size: 16 Copynumber: 3.9 Consensus size: 15
18838797 TTTTATTTAA
18838807 TTTTTAATTTATTTT
1 TTTTTAATTTATTTT
*
18838822 TATTTT--TTGAATTTT
1 T-TTTTAATT-TATTTT
*
18838837 TTTTTAATTTTATGTT
1 TTTTTAA-TTTATTTT
18838853 TTTTTAATTTATT
1 TTTTTAATTTATT
18838866 AAAACTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
14 6 0.17
15 12 0.34
16 15 0.43
17 2 0.06
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTTTAATTTATTTT
Found at i:18838842 original size:25 final size:27
Alignment explanation
Indices: 18838805--18838855 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
18838795 AGTTTTATTT
*
18838805 AATTTTTAATTTATTTTTAT-TTTTTG
1 AATTTTTAATTTAATTTTATGTTTTTG
*
18838831 AATTTTT-TTTTAATTTTATGTTTTT
1 AATTTTTAATTTAATTTTATGTTTTT
18838856 TTAATTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.75
Consensus pattern (27 bp):
AATTTTTAATTTAATTTTATGTTTTTG
Found at i:18839679 original size:6 final size:6
Alignment explanation
Indices: 18839668--18839709 Score: 84
Period size: 6 Copynumber: 7.0 Consensus size: 6
18839658 GGTTTTGTTT
18839668 GGTTAA GGTTAA GGTTAA GGTTAA GGTTAA GGTTAA GGTTAA
1 GGTTAA GGTTAA GGTTAA GGTTAA GGTTAA GGTTAA GGTTAA
18839710 CAATCCAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (6 bp):
GGTTAA
Found at i:18849784 original size:142 final size:142
Alignment explanation
Indices: 18849528--18849796 Score: 380
Period size: 142 Copynumber: 1.9 Consensus size: 142
18849518 ATAGACAAGA
** * * * *
18849528 GGAAAACTTGGGCATCTAAAGCAAAACTGATTTAAAAGGGAATAACAGTCTTTCACTCTCATCAC
1 GGAAAACCAGGGCATCTAAAACAAAACTCATTTAAAAGGGAACAACAGTCTATCACTCTCATCAC
** * *
18849593 CTACCATCTCCTTCGAGACTCGATTACGTTAGGAAACAGAAGATATATGAATGAAAATTGATACA
66 CTACCATCTCCCCCGAGACTCAATTACGTTAGGAAACAGAAGATATATGAATGAAAACTGATACA
18849658 AAACAAATATGT
131 AAACAAATATGT
* *
18849670 GGAAAACCAGGGCATCTAAAACAAAAC-CATTTTAAAAGGGAGCAACAGTCTATCATTCTCATCA
1 GGAAAACCAGGGCATCTAAAACAAAACTCA-TTTAAAAGGGAACAACAGTCTATCACTCTCATCA
* *
18849734 CCTACCATCTCCCCCGAGACTCAATTA-TTATATGAAACAGAAGATATATGAATGAAAACTGAT
65 CCTACCATCTCCCCCGAGACTCAATTACGT-TAGGAAACAGAAGATATATGAATGAAAACTGAT
18849797 TAAAAAAAAA
Statistics
Matches: 111, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
141 2 0.02
142 109 0.98
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (142 bp):
GGAAAACCAGGGCATCTAAAACAAAACTCATTTAAAAGGGAACAACAGTCTATCACTCTCATCAC
CTACCATCTCCCCCGAGACTCAATTACGTTAGGAAACAGAAGATATATGAATGAAAACTGATACA
AAACAAATATGT
Found at i:18859495 original size:10 final size:10
Alignment explanation
Indices: 18859461--18859508 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
18859451 AATTTAGGAT
*
18859461 TTATTTTTAA
1 TTATCTTTAA
*
18859471 TTATATTTAA
1 TTATCTTTAA
18859481 TTATCTTTAA
1 TTATCTTTAA
* *
18859491 TTATCTGTAT
1 TTATCTTTAA
18859501 TTATCTTT
1 TTATCTTT
18859509 TAGAATTTAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:18863256 original size:25 final size:26
Alignment explanation
Indices: 18863203--18863285 Score: 77
Period size: 25 Copynumber: 3.3 Consensus size: 26
18863193 TTTATTTTAT
*
18863203 TTTTA-TTTATTTTATTTATTGT-TTTC
1 TTTTATTTTATTTTA-TTATT-TATTAC
* *
18863229 TTTTGTTTTCTTTT-TTATTTATTAC
1 TTTTATTTTATTTTATTATTTATTAC
*
18863254 -TTTATTTTATTTTATTATTTGTTAC
1 TTTTATTTTATTTTATTATTTATTAC
18863279 -TTTATTT
1 TTTTATTT
18863286 GGATATTAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
24 12 0.25
25 25 0.52
26 4 0.08
27 7 0.15
ACGTcount: A:0.16, C:0.05, G:0.04, T:0.76
Consensus pattern (26 bp):
TTTTATTTTATTTTATTATTTATTAC
Found at i:18864497 original size:93 final size:93
Alignment explanation
Indices: 18864321--18864504 Score: 260
Period size: 93 Copynumber: 2.0 Consensus size: 93
18864311 TTTTTAAGAA
* * **
18864321 TGTGTTAGGATGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTTTTCGTGTCAAAAGGTTTG
1 TGTGTTAGGATGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCA
* *
18864386 ATATGTTCTTAAGAAAAAAAATTAGTAG
66 ATATATTCCTAAGAAAAAAAATTAGTAG
* * * *
18864414 TGTGTTGGGCTGAGTAACCGGGGTGGGGTGCTTGGCTGTTATCTCTCTTCGCGTCAAAAGGTTCA
1 TGTGTTAGGATGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCA
18864479 ATATATTCCTAAGTAAAAATAAATTA
66 ATATATTCCTAAG-AAAAA-AAATTA
18864505 ATAACTAAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
93 68 0.86
94 5 0.06
95 6 0.08
ACGTcount: A:0.26, C:0.13, G:0.27, T:0.34
Consensus pattern (93 bp):
TGTGTTAGGATGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCA
ATATATTCCTAAGAAAAAAAATTAGTAG
Found at i:18865736 original size:2 final size:2
Alignment explanation
Indices: 18865724--18865765 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
18865714 CTGTAAGAAG
18865724 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18865765 T
1 T
18865766 TTCAAGAGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18872619 original size:18 final size:18
Alignment explanation
Indices: 18872586--18872642 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
18872576 AAAAATTGTG
18872586 ATAATTACACATTTAAAAA
1 ATAATTACA-ATTTAAAAA
**
18872605 ATAATTACAATTTAAATT
1 ATAATTACAATTTAAAAA
*
18872623 ATAATTATTAA-TTAAAAA
1 ATAATTA-CAATTTAAAAA
18872641 AT
1 AT
18872643 TTGTGCTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
18 21 0.66
19 11 0.34
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (18 bp):
ATAATTACAATTTAAAAA
Found at i:18873441 original size:29 final size:30
Alignment explanation
Indices: 18873381--18873441 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
18873371 ATTTATTTTA
*
18873381 TTGTTAATTTTCTTATTATTTTAAAGGTAT
1 TTGTTAATTTTCTTATTATTTTAAAGGCAT
18873411 TTGTTAATTTT-TTATTATTTTAGAA-GCAT
1 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
18873440 TT
1 TT
18873442 TGTTGTTAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.26, C:0.03, G:0.10, T:0.61
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAAAGGCAT
Found at i:18873444 original size:30 final size:30
Alignment explanation
Indices: 18873381--18873445 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
18873371 ATTTATTTTA
*
18873381 TTGTTAATTTTCTTATTATTTTAAAGGTAT
1 TTGTTAATTTTCTTATTATTTTAAAGATAT
18873411 TTGTTAATTTT-TTATTATTTTAGAAGCAT-T
1 TTGTTAATTTTCTTATTATTTTA-AAG-ATAT
18873441 TTGTT
1 TTGTT
18873446 GTTAAGTTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 11 0.34
30 20 0.62
31 1 0.03
ACGTcount: A:0.25, C:0.03, G:0.11, T:0.62
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAAAGATAT
Found at i:18874131 original size:25 final size:25
Alignment explanation
Indices: 18874073--18874131 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 25
18874063 TAAAAGAAAT
* * **
18874073 AAATACATATATTTATTTTTATATT
1 AAATAAATATATTTATTTATATAGG
*
18874098 AAATTAATATATTTATTTATATAGG
1 AAATAAATATATTTATTTATATAGG
*
18874123 GAATAAATA
1 AAATAAATA
18874132 AATGTAAAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (25 bp):
AAATAAATATATTTATTTATATAGG
Found at i:18874327 original size:25 final size:25
Alignment explanation
Indices: 18874269--18874327 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 25
18874259 TAAAAGAAAT
* * **
18874269 AAATACATATATTTATTTTTATATT
1 AAATAAATATATTTATTTATATAGG
*
18874294 AAATTAATATATTTATTTATATAGG
1 AAATAAATATATTTATTTATATAGG
*
18874319 GAATAAATA
1 AAATAAATA
18874328 AATGTAAAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (25 bp):
AAATAAATATATTTATTTATATAGG
Found at i:18874365 original size:196 final size:196
Alignment explanation
Indices: 18874031--18874424 Score: 788
Period size: 196 Copynumber: 2.0 Consensus size: 196
18874021 TTTTTATATG
18874031 GTTTTTGTAAATTTTAATTTAATTATATATTTTAAAAGAAATAAATACATATATTTATTTTTATA
1 GTTTTTGTAAATTTTAATTTAATTATATATTTTAAAAGAAATAAATACATATATTTATTTTTATA
18874096 TTAAATTAATATATTTATTTATATAGGGAATAAATAAATGTAAAATGGTGTTTTTCTAATAATAT
66 TTAAATTAATATATTTATTTATATAGGGAATAAATAAATGTAAAATGGTGTTTTTCTAATAATAT
18874161 TTTTTAGGTGAAAATTAAATCAAATAAAAATTTTATATATAAAATCAAAGTTTAATGTATGATAC
131 TTTTTAGGTGAAAATTAAATCAAATAAAAATTTTATATATAAAATCAAAGTTTAATGTATGATAC
18874226 C
196 C
18874227 GTTTTTGTAAATTTTAATTTAATTATATATTTTAAAAGAAATAAATACATATATTTATTTTTATA
1 GTTTTTGTAAATTTTAATTTAATTATATATTTTAAAAGAAATAAATACATATATTTATTTTTATA
18874292 TTAAATTAATATATTTATTTATATAGGGAATAAATAAATGTAAAATGGTGTTTTTCTAATAATAT
66 TTAAATTAATATATTTATTTATATAGGGAATAAATAAATGTAAAATGGTGTTTTTCTAATAATAT
18874357 TTTTTAGGTGAAAATTAAATCAAATAAAAATTTTATATATAAAATCAAAGTTTAATGTATGATAC
131 TTTTTAGGTGAAAATTAAATCAAATAAAAATTTTATATATAAAATCAAAGTTTAATGTATGATAC
18874422 C
196 C
18874423 GT
1 GT
18874425 GCAATAAATT
Statistics
Matches: 198, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
196 198 1.00
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (196 bp):
GTTTTTGTAAATTTTAATTTAATTATATATTTTAAAAGAAATAAATACATATATTTATTTTTATA
TTAAATTAATATATTTATTTATATAGGGAATAAATAAATGTAAAATGGTGTTTTTCTAATAATAT
TTTTTAGGTGAAAATTAAATCAAATAAAAATTTTATATATAAAATCAAAGTTTAATGTATGATAC
C
Found at i:18877496 original size:19 final size:19
Alignment explanation
Indices: 18877472--18877510 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
18877462 CAATGTAATT
18877472 TTTTTTTACTGTTTTGCTA
1 TTTTTTTACTGTTTTGCTA
*
18877491 TTTTTTTATTGTTTTGCTA
1 TTTTTTTACTGTTTTGCTA
18877510 T
1 T
18877511 CATTTCATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.10, C:0.08, G:0.10, T:0.72
Consensus pattern (19 bp):
TTTTTTTACTGTTTTGCTA
Found at i:18878277 original size:534 final size:534
Alignment explanation
Indices: 18877223--18878290 Score: 1598
Period size: 533 Copynumber: 2.0 Consensus size: 534
18877213 TCAAACCTAA
*
18877223 ACCTAAAATTACATGAATTGAACTCAGAAAATTTTCATTCATGAATACTTTTAACTACACTTGTA
1 ACCTAAAATTACATGAATTAAACTCAGAAAATTTTCATTCATGAATACTTTTAACTACACTTGTA
* * ** * **
18877288 TATGGTTAAGCCGAAGGTCTGCTTGAAAAGTGAGAGGATTTGAATAAAAATATAAGCTCAAAAAT
66 CATGGCTAAGCCGAAGGTCCACTCGAAAAGTGAGAGGACCTGAATAAAAATATAAGCTCAAAAAT
* * * * *
18877353 AGGCTTAGACAAAAAATAAGGCCTGTTTTTTAAACGGATCAAGCCTAGGATAAGCTTTTCTGGTC
131 AGACTTAGACAAAAAACAAGGCCCGTTTTCTAAACGGATCAAGCCTAGGATAAGATTTTCTGGTC
*
18877418 AGGGCTTGACCCAACCTGGCCTAATTTGTAAAAAAAAAAAAAACCAATGTAATTTTTTTTTACTG
196 AGGGCCTGACCCAACCTGGCCTAATTTGT-AAAAAAAAAAAAACCAATGTAATTTTTTTTTACTG
18877483 TTTTGCTATTTTTTTATTGTTTTGCTATCATTTCATTATTATAATGCTAATATTTTATTGTTATT
260 TTTTGCTATTTTTTTATTGTTTTGCTATCATTTCATTATTATAATGCTAATATTTTATTGTTATT
*
18877548 GTTTGGATATTGTATAACTCTTATTTTATTATTAATTTTGCTATTATTTTAGAGATATTTGCCTG
325 GTTTGGATATTGTATAACTCTTATTTTATTATTAATTTTGCTACTATTTTAGAGATATTTGCCTG
* *
18877613 TTAAGTTACACTTATCTTAGTGTTATTTAAGTATTAATTTTTTTATTTGTTGGGAAACATTTATT
390 CTAAGTTACACTTATCTTAGTCTTATTTAAGTATTAATTTTTTTATTTGTTGGGAAACATTTATT
18877678 TTAATATTTTTAGTGTATTTGATATATTATATTTTTAAAATTTATTTCTATATAAAAATAATAAT
455 TTAATATTTTTAGTGTATTTGATATATTATATTTTTAAAATTTATTTCTATATAAAAATAATAAT
18877743 -ATA-AAAAATTTTG
520 AATATAAAAATTTTG
* *
18877756 ACCTAAAATTACATGAATTAAACTCAGAAAATTTTCATTCATGAATACTTTTAATTGCACTTGTA
1 ACCTAAAATTACATGAATTAAACTCAGAAAATTTTCATTCATGAATACTTTTAACTACACTTGTA
* * *
18877821 CATGGCTAGGCCGAAGGTCCACTCGAAAAGTGAGAGGACCTGGATAAAAATATAGGCTCAAAAAA
66 CATGGCTAAGCCGAAGGTCCACTCGAAAAGTGAGAGGACCTGAATAAAAATATAAGCTC-AAAAA
* * *
18877886 TAGATTTAGAC-AAAAACAAGGCCCGTTTTCTAAACGGATCAAGCCTAGGGTAA-ATTTTTTGGT
130 TAGACTTAGACAAAAAACAAGGCCCGTTTTCTAAACGGATCAAGCCTAGGATAAGATTTTCTGGT
* ***
18877949 C-GAGGCCTGACCTAACCTGGCCTGAATTTGT-AAAAAAAAAAAATTGATGCT-ATTTTTTTTTA
195 CAG-GGCCTGACCCAACCTGGCCT-AATTTGTAAAAAAAAAAAAACCAATG-TAATTTTTTTTTA
* * * *
18878011 CTGTTTTGCTACTGTTTTTTAATTGTTTTGCTATTATTTCATTATTATATTGCTACTATTTTGTT
257 CTGTTTTGCTA-T-TTTTTT-ATTGTTTTGCTATCATTTCATTATTATAATGCTAATATTTTATT
*
18878076 GTTATTGTTTGGATATTGTATAACTCTTATTTTATTATTAATTTTGCTACTATTTTAGAGGTATT
319 GTTATTGTTTGGATATTGTATAACTCTTATTTTATTATTAATTTTGCTACTATTTTAGAGATATT
* *
18878141 TGCTTGCTAAGTTACATTTATCTTAGTCTTATTTAAGTATTTTTTAATTTTTTTATTTGTTGGGA
384 TGCCTGCTAAGTTACACTTATCTTAGTCTTATTTAAGTA----TTAATTTTTTTATTTGTTGGGA
* * * *
18878206 AATATTTATTTTAAT-TTTTTAGTGTATTTGATGTATTATATTTTTTAAATTTATTTTTATATAA
445 AACATTTATTTTAATATTTTTAGTGTATTTGATATATTATATTTTTAAAATTTATTTCTATATAA
18878270 AAATAATAAT-ATA-AAAAATTT
510 AAATAATAATAATATAAAAATTT
18878291 AATATGGGCG
Statistics
Matches: 484, Mismatches: 40, Indels: 18
0.89 0.07 0.03
Matches are distributed among these distances:
531 38 0.08
532 29 0.06
533 162 0.33
534 152 0.31
537 67 0.14
538 36 0.07
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (534 bp):
ACCTAAAATTACATGAATTAAACTCAGAAAATTTTCATTCATGAATACTTTTAACTACACTTGTA
CATGGCTAAGCCGAAGGTCCACTCGAAAAGTGAGAGGACCTGAATAAAAATATAAGCTCAAAAAT
AGACTTAGACAAAAAACAAGGCCCGTTTTCTAAACGGATCAAGCCTAGGATAAGATTTTCTGGTC
AGGGCCTGACCCAACCTGGCCTAATTTGTAAAAAAAAAAAAACCAATGTAATTTTTTTTTACTGT
TTTGCTATTTTTTTATTGTTTTGCTATCATTTCATTATTATAATGCTAATATTTTATTGTTATTG
TTTGGATATTGTATAACTCTTATTTTATTATTAATTTTGCTACTATTTTAGAGATATTTGCCTGC
TAAGTTACACTTATCTTAGTCTTATTTAAGTATTAATTTTTTTATTTGTTGGGAAACATTTATTT
TAATATTTTTAGTGTATTTGATATATTATATTTTTAAAATTTATTTCTATATAAAAATAATAATA
ATATAAAAATTTTG
Done.