Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 89 of 444
Found at i:21212490 original size:17 final size:17
Alignment explanation
Indices: 21212468--21212501 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
21212458 AAATATAACA
*
21212468 TTTTTGAATAATACTTG
1 TTTTTGAATAAAACTTG
21212485 TTTTTGAATAAAACTTG
1 TTTTTGAATAAAACTTG
21212502 ATAAATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.50
Consensus pattern (17 bp):
TTTTTGAATAAAACTTG
Found at i:21217309 original size:31 final size:31
Alignment explanation
Indices: 21217271--21217334 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
21217261 CCTTTTCATA
21217271 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
21217302 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
21217333 TT
1 TT
21217335 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:21217634 original size:25 final size:24
Alignment explanation
Indices: 21217528--21217648 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
21217518 GCTTTATCAT
*
21217528 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
21217553 ATAAATGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
21217576 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
21217600 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
21217625 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
21217649 CACTTCCTCT
Statistics
Matches: 88, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
23 17 0.19
24 41 0.47
25 30 0.34
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:21217641 original size:49 final size:48
Alignment explanation
Indices: 21217519--21217648 Score: 174
Period size: 49 Copynumber: 2.6 Consensus size: 48
21217509 CGCATAGCTG
*
21217519 CTTTATCATATAACTGGAGGCCT-AGCCTCTTTTAATAAATGGGGCAAAGCC
1 CTTTATC--ATAACTGG-GGCATAAGCC-CTTTTAATAAATGGGGCAAAGCC
* *
21217570 CTTT-TAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCCCTTTTAATAAATGGGGCA-AAGCC
21217618 CTTTATCATAACTGGGGCATAAGCCCTTTTA
1 CTTTATCATAACTGGGGCATAAGCCCTTTTA
21217649 CACTTCCTCT
Statistics
Matches: 72, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
47 21 0.29
48 21 0.29
49 25 0.35
50 1 0.01
51 4 0.06
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (48 bp):
CTTTATCATAACTGGGGCATAAGCCCTTTTAATAAATGGGGCAAAGCC
Found at i:21217722 original size:20 final size:20
Alignment explanation
Indices: 21217697--21217763 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
21217687 TTATGAATAC
21217697 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
21217717 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
21217737 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
21217757 ACCATGT
1 ATCATGT
21217764 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:21218890 original size:20 final size:21
Alignment explanation
Indices: 21218865--21218903 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
21218855 AGTAGAGATA
21218865 AATGAA-AGAAATAATGGGTG
1 AATGAAGAGAAATAATGGGTG
*
21218885 AATGAAGGGAAATAATGGG
1 AATGAAGAGAAATAATGGG
21218904 CTGGTTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.49, C:0.00, G:0.33, T:0.18
Consensus pattern (21 bp):
AATGAAGAGAAATAATGGGTG
Found at i:21231231 original size:28 final size:29
Alignment explanation
Indices: 21231200--21231258 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
21231190 CAAAATACTG
**
21231200 ATAT-CATGGCCTGAAGCCAAATCAGCTT
1 ATATGCATGGCCCAAAGCCAAATCAGCTT
*
21231228 ATATGCATGGCCCAAAGCCAAATCAGTTT
1 ATATGCATGGCCCAAAGCCAAATCAGCTT
21231257 AT
1 AT
21231259 CTTGCACCCG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 4 0.15
29 23 0.85
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (29 bp):
ATATGCATGGCCCAAAGCCAAATCAGCTT
Found at i:21233720 original size:32 final size:32
Alignment explanation
Indices: 21233683--21233746 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
21233673 GTTAGATGTA
* *
21233683 AGAAATGACAAAAAAAGAGAGGACTTTTAGTT
1 AGAAATGACAAAAAAAGAAAGGACTTGTAGTT
*
21233715 AGAAATGACAAAAAAAGAAAGGGCTTGTAGTT
1 AGAAATGACAAAAAAAGAAAGGACTTGTAGTT
21233747 TTGGGATGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.50, C:0.06, G:0.23, T:0.20
Consensus pattern (32 bp):
AGAAATGACAAAAAAAGAAAGGACTTGTAGTT
Found at i:21233975 original size:21 final size:21
Alignment explanation
Indices: 21233951--21233990 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
21233941 GTGAAATAAA
21233951 TAAAAA-GAAAAAGAAAAATGT
1 TAAAAATGAAAAA-AAAAATGT
*
21233972 TAAAAATTAAAAAAAAAAT
1 TAAAAATGAAAAAAAAAAT
21233991 TAAAATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.17
Consensus pattern (21 bp):
TAAAAATGAAAAAAAAAATGT
Found at i:21237752 original size:21 final size:20
Alignment explanation
Indices: 21237728--21237766 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
21237718 GAAACTGAGT
*
21237728 CATTAGAGTTGAAATTGAAAC
1 CATTAGA-TTGAAAATGAAAC
*
21237749 CATTATATTGAAAATGAA
1 CATTAGATTGAAAATGAA
21237767 TCTACAATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (20 bp):
CATTAGATTGAAAATGAAAC
Found at i:21240814 original size:31 final size:31
Alignment explanation
Indices: 21240775--21240858 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
21240765 GGGAATTAGT
* *
21240775 CATTCATATTTGCATATCCATACCCTTTAATA
1 CATTCATATTTGCATATTCATACCCTGTAA-A
21240807 -ATTCATATTTGCATATTCATACCCTGTAAA
1 CATTCATATTTGCATATTCATACCCTGTAAA
*
21240837 CATTCATATTTACATATTCATA
1 CATTCATATTTGCATATTCATA
21240859 TCTTGTACAG
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
30 1 0.02
31 47 0.98
ACGTcount: A:0.33, C:0.21, G:0.04, T:0.42
Consensus pattern (31 bp):
CATTCATATTTGCATATTCATACCCTGTAAA
Found at i:21247713 original size:15 final size:15
Alignment explanation
Indices: 21247693--21247722 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
21247683 CGATCAAGTT
21247693 TAATTTTCCTCACTC
1 TAATTTTCCTCACTC
21247708 TAATTTTCCTCACTC
1 TAATTTTCCTCACTC
21247723 CCCCTATACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.33, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATTTTCCTCACTC
Found at i:21251300 original size:22 final size:22
Alignment explanation
Indices: 21251274--21251318 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
21251264 TTTTAATAAA
21251274 AAAATATCCACAAAATATTCCT
1 AAAATATCCACAAAATATTCCT
** *
21251296 AAAATATTTACAGAATATTCCT
1 AAAATATCCACAAAATATTCCT
21251318 A
1 A
21251319 CACTCCCCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAATATCCACAAAATATTCCT
Found at i:21255877 original size:22 final size:22
Alignment explanation
Indices: 21255852--21255905 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
21255842 TTTAATAAAA
21255852 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
*
21255874 AAAATATTTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
21255896 ACATAATATC
1 A-A-AATATC
21255906 ATGCGGCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 22 0.79
23 1 0.04
24 5 0.18
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:21255903 original size:13 final size:13
Alignment explanation
Indices: 21255859--21255904 Score: 55
Period size: 11 Copynumber: 3.8 Consensus size: 13
21255849 AAAAAAATAT
21255859 CTACAAAATATTC
1 CTACAAAATATTC
21255872 CT--AAAATATT-
1 CTACAAAATATTC
21255882 -TACAAAATATTC
1 CTACAAAATATTC
*
21255894 CTACATAATAT
1 CTACAAAATAT
21255905 CATGCGGCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
9 1 0.04
11 16 0.57
13 11 0.39
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (13 bp):
CTACAAAATATTC
Found at i:21263095 original size:40 final size:39
Alignment explanation
Indices: 21263051--21263131 Score: 94
Period size: 40 Copynumber: 2.0 Consensus size: 39
21263041 TTTTTCATAT
*
21263051 TAATTATTTATTTTA-ATTTTTT-ATACTTATTTTGATAAAA
1 TAATT-TTTATTTTAGATTTTTTAATA-TTA-TTTGACAAAA
*
21263091 TAATTTTTGTTTTATGATTTTTTAATATTATTTGACAAAA
1 TAATTTTTATTTTA-GATTTTTTAATATTATTTGACAAAA
21263131 T
1 T
21263132 TTCAAGGTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
39 8 0.22
40 15 0.42
41 10 0.28
42 3 0.08
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.59
Consensus pattern (39 bp):
TAATTTTTATTTTAGATTTTTTAATATTATTTGACAAAA
Found at i:21263254 original size:23 final size:23
Alignment explanation
Indices: 21263218--21263264 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
21263208 ATATTTTATT
21263218 ATTATATAAAAAATTAAAAA-TTA
1 ATTATATAAAAAA-TAAAAAGTTA
**
21263241 ATTATATATTAAATAAAAAGTTA
1 ATTATATAAAAAATAAAAAGTTA
21263264 A
1 A
21263265 ATTTAATTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (23 bp):
ATTATATAAAAAATAAAAAGTTA
Found at i:21266570 original size:40 final size:40
Alignment explanation
Indices: 21266473--21266609 Score: 166
Period size: 41 Copynumber: 3.4 Consensus size: 40
21266463 GCGTTTGAAA
* * * *
21266473 CAAAACGCCGCTAAAAACTGAGCAATAGTGGTGTTTTTAT
1 CAAAACGCCGCAAAAAACTGAGAAATAGTGGCGTTTTTTT
* *
21266513 CTAAAACGCCGCTAAAAACTGAGAAATAGTGACGTTTTTTT
1 C-AAAACGCCGCAAAAAACTGAGAAATAGTGGCGTTTTTTT
* *
21266554 CAAAACGCCGCAAAAAACTGAGATATAGTGGCGCTTTTGTT
1 CAAAACGCCGCAAAAAACTGAGAAATAGTGGCG-TTTTTTT
* *
21266595 CCAAACGCCACAAAA
1 CAAAACGCCGCAAAA
21266610 GGTTGAGCTA
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
40 30 0.35
41 55 0.65
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (40 bp):
CAAAACGCCGCAAAAAACTGAGAAATAGTGGCGTTTTTTT
Found at i:21268538 original size:19 final size:20
Alignment explanation
Indices: 21268513--21268564 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
21268503 CCCCACCCAA
*
21268513 ATTTCCCCAAATCCCTAACT
1 ATTTCCCCAAATCCCTAAAT
*
21268533 -TTTCCCCTAATCCCTAAAT
1 ATTTCCCCAAATCCCTAAAT
*
21268552 ATTTACCCAAATC
1 ATTTCCCCAAATC
21268565 AAAATCGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.31, C:0.37, G:0.00, T:0.33
Consensus pattern (20 bp):
ATTTCCCCAAATCCCTAAAT
Found at i:21271221 original size:23 final size:23
Alignment explanation
Indices: 21271191--21271240 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
21271181 AACATTAATC
21271191 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
21271214 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
21271237 AAAT
1 AAAT
21271241 AAACTTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
AAATGTATGAATTGCAGCCCTTT
Found at i:21271627 original size:9 final size:9
Alignment explanation
Indices: 21271615--21271686 Score: 81
Period size: 9 Copynumber: 7.7 Consensus size: 9
21271605 TTTACATAAC
21271615 AACTTACAT
1 AACTTACAT
*
21271624 AACTCACAT
1 AACTTACAT
21271633 AACTTACAT
1 AACTTACAT
*
21271642 AATTTACAT
1 AACTTACAT
*
21271651 AACTCACAT
1 AACTTACAT
*
21271660 AACGTACAT
1 AACTTACAT
21271669 AACAACTTACAT
1 ---AACTTACAT
21271681 AACTTA
1 AACTTA
21271687 ACTAATACAT
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
9 44 0.85
12 8 0.15
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (9 bp):
AACTTACAT
Found at i:21271656 original size:27 final size:27
Alignment explanation
Indices: 21271618--21271670 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
21271608 ACATAACAAC
*
21271618 TTACATAACTCACATAACTTACATAAT
1 TTACATAACTCACATAACGTACATAAT
21271645 TTACATAACTCACATAACGTACATAA
1 TTACATAACTCACATAACGTACATAA
21271671 CAACTTACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (27 bp):
TTACATAACTCACATAACGTACATAAT
Found at i:21275978 original size:14 final size:15
Alignment explanation
Indices: 21275948--21275980 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
21275938 TATTTTTTAT
21275948 TTTTAACTTTAATTC
1 TTTTAACTTTAATTC
21275963 TTTTAACTTT-ATTC
1 TTTTAACTTTAATTC
21275977 TTTT
1 TTTT
21275981 TTTTTCACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTAACTTTAATTC
Found at i:21279311 original size:9 final size:9
Alignment explanation
Indices: 21279297--21279322 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
21279287 TTGCAAGAAT
21279297 GATGAGGAC
1 GATGAGGAC
21279306 GATGAGGAC
1 GATGAGGAC
21279315 GATGAGGA
1 GATGAGGA
21279323 TAATGTTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.08, G:0.46, T:0.12
Consensus pattern (9 bp):
GATGAGGAC
Found at i:21279496 original size:23 final size:24
Alignment explanation
Indices: 21279466--21279573 Score: 68
Period size: 22 Copynumber: 4.8 Consensus size: 24
21279456 AGGTTTTTTG
*
21279466 TGCTATTTTGGTG-TTTTTGGTGA
1 TGCTATTTTGGTGCTGTTTGGTGA
* *
21279489 TGCTATTTTTGTGCTGTTTGGTGC
1 TGCTATTTTGGTGCTGTTTGGTGA
** * *
21279513 TG-T-TTTTTATGCTATTT--TTA
1 TGCTATTTTGGTGCTGTTTGGTGA
* *
21279533 TGCTGTTTTGGTGCTGTTT--TGT
1 TGCTATTTTGGTGCTGTTTGGTGA
* *
21279555 TGCTGTTTTGGTGTTGTTT
1 TGCTATTTTGGTGCTGTTT
21279574 TTATACTTAG
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
20 3 0.04
21 1 0.01
22 42 0.61
23 13 0.19
24 10 0.14
ACGTcount: A:0.06, C:0.07, G:0.27, T:0.60
Consensus pattern (24 bp):
TGCTATTTTGGTGCTGTTTGGTGA
Found at i:21279508 original size:24 final size:23
Alignment explanation
Indices: 21279466--21279511 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
21279456 AGGTTTTTTG
*
21279466 TGCTATTTTGGTGTTTTTGGTGA
1 TGCTATTTTGGTGTGTTTGGTGA
*
21279489 TGCTATTTTTGTGCTGTTTGGTG
1 TGCTATTTTGGTG-TGTTTGGTG
21279512 CTGTTTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.07, C:0.07, G:0.30, T:0.57
Consensus pattern (23 bp):
TGCTATTTTGGTGTGTTTGGTGA
Found at i:21279525 original size:33 final size:34
Alignment explanation
Indices: 21279488--21279552 Score: 114
Period size: 33 Copynumber: 1.9 Consensus size: 34
21279478 GTTTTTGGTG
*
21279488 ATGCTATTTTTGTGCTG-TTTGGTGCTGTTTTTT
1 ATGCTATTTTTATGCTGTTTTGGTGCTGTTTTTT
21279521 ATGCTATTTTTATGCTGTTTTGGTGCTGTTTT
1 ATGCTATTTTTATGCTGTTTTGGTGCTGTTTT
21279553 GTTGCTGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 16 0.53
34 14 0.47
ACGTcount: A:0.08, C:0.09, G:0.23, T:0.60
Consensus pattern (34 bp):
ATGCTATTTTTATGCTGTTTTGGTGCTGTTTTTT
Found at i:21279553 original size:11 final size:11
Alignment explanation
Indices: 21279489--21279574 Score: 75
Period size: 11 Copynumber: 7.8 Consensus size: 11
21279479 TTTTTGGTGA
* *
21279489 TGCTATTTTTG
1 TGCTGTTTTGG
21279500 TGCTG-TTTGG
1 TGCTGTTTTGG
**
21279510 TGCTGTTTTTTA
1 TGCTG-TTTTGG
* **
21279522 TGCTATTTTTA
1 TGCTGTTTTGG
21279533 TGCTGTTTTGG
1 TGCTGTTTTGG
*
21279544 TGCTGTTTTGT
1 TGCTGTTTTGG
21279555 TGCTGTTTTGG
1 TGCTGTTTTGG
*
21279566 TGTTGTTTT
1 TGCTGTTTT
21279575 TATACTTAGG
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
10 9 0.15
11 46 0.74
12 7 0.11
ACGTcount: A:0.05, C:0.08, G:0.26, T:0.62
Consensus pattern (11 bp):
TGCTGTTTTGG
Found at i:21279575 original size:44 final size:42
Alignment explanation
Indices: 21279461--21279577 Score: 108
Period size: 44 Copynumber: 2.6 Consensus size: 42
21279451 TTTGCAGGTT
* * *
21279461 TTTTGTGCTATTTTGGTGTTTTTGGTGATGCTATTTTTGTGCTG
1 TTTTGTGCTGTTTTGGTGTTTTT--TTATGCTATTTTGGTGCTG
* ** * *
21279505 TTTGGTGCTGTTTTTTATGCTATTTTTATGCTGTTTTGGTGCTG
1 TTTTGTGCTG-TTTTGGTG-TTTTTTTATGCTATTTTGGTGCTG
21279549 TTTTGTTGCTGTTTTGGTGTTGTTTTTAT
1 TTTTG-TGCTGTTTTGGTGTT-TTTTTAT
21279578 ACTTAGGTAT
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
43 1 0.02
44 41 0.72
45 11 0.19
46 4 0.07
ACGTcount: A:0.06, C:0.07, G:0.26, T:0.62
Consensus pattern (42 bp):
TTTTGTGCTGTTTTGGTGTTTTTTTATGCTATTTTGGTGCTG
Found at i:21280242 original size:11 final size:11
Alignment explanation
Indices: 21280226--21280261 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
21280216 CTGAACTTGC
21280226 TTTGGTGCTGT
1 TTTGGTGCTGT
*
21280237 TTTGGTGTTGT
1 TTTGGTGCTGT
*
21280248 TTTGGTGGTGT
1 TTTGGTGCTGT
21280259 TTT
1 TTT
21280262 ATTGTTCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.00, C:0.03, G:0.36, T:0.61
Consensus pattern (11 bp):
TTTGGTGCTGT
Found at i:21280267 original size:22 final size:22
Alignment explanation
Indices: 21280226--21280273 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
21280216 CTGAACTTGC
* *
21280226 TTTGGTGCTGTTTTGGTGTTGT
1 TTTGGTGCTGTTTTAGTGTTCT
* *
21280248 TTTGGTGGTGTTTTATTGTTCT
1 TTTGGTGCTGTTTTAGTGTTCT
21280270 TTTG
1 TTTG
21280274 CAACTATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.02, C:0.04, G:0.31, T:0.62
Consensus pattern (22 bp):
TTTGGTGCTGTTTTAGTGTTCT
Found at i:21280538 original size:17 final size:18
Alignment explanation
Indices: 21280510--21280547 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
21280500 TGTTTCTGAT
21280510 TTTAATATTTATTTTAAA
1 TTTAATATTTATTTTAAA
21280528 TTTAA-ATTTATTTTAAA
1 TTTAATATTTATTTTAAA
21280545 TTT
1 TTT
21280548 TTTATTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTAATATTTATTTTAAA
Found at i:21285822 original size:21 final size:21
Alignment explanation
Indices: 21285796--21285843 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
21285786 TCAACTTAGA
21285796 GCGGAGGCAGCAGCGCA-GGAG
1 GCGGAGGCAGCAGCG-AGGGAG
21285817 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
21285838 GCGGAG
1 GCGGAG
21285844 CAGAACAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 1 0.04
21 25 0.96
ACGTcount: A:0.23, C:0.21, G:0.56, T:0.00
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:21289032 original size:20 final size:20
Alignment explanation
Indices: 21289007--21289058 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
21288997 AGATGAGTAC
* *
21289007 AAAATTATAATATTTTTTAA
1 AAAATTATAAAATTTGTTAA
21289027 AAAATTATAAAATTTGTT-A
1 AAAATTATAAAATTTGTTAA
21289046 AAAATTACTAAAA
1 AAAATTA-TAAAA
21289059 ATTATAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 8 0.28
20 21 0.72
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
AAAATTATAAAATTTGTTAA
Found at i:21289066 original size:9 final size:9
Alignment explanation
Indices: 21289026--21289074 Score: 55
Period size: 10 Copynumber: 5.3 Consensus size: 9
21289016 ATATTTTTTA
21289026 AAAAATTAT
1 AAAAATTAT
* *
21289035 AAAATTTGTT
1 AAAAATT-AT
21289045 AAAAATTACT
1 AAAAATTA-T
21289055 AAAAATTAT
1 AAAAATTAT
21289064 AAAAATT-T
1 AAAAATTAT
21289072 AAA
1 AAA
21289075 TATGTAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
8 4 0.12
9 14 0.41
10 16 0.47
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (9 bp):
AAAAATTAT
Found at i:21289066 original size:19 final size:19
Alignment explanation
Indices: 21289026--21289074 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
21289016 ATATTTTTTA
* *
21289026 AAAAATTATAAAATTTGTT
1 AAAAATTATAAAAATTGAT
21289045 AAAAATTACTAAAAATT-AT
1 AAAAATTA-TAAAAATTGAT
21289064 AAAAATT-TAAA
1 AAAAATTATAAA
21289075 TATGTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 4 0.15
19 16 0.59
20 7 0.26
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAAATTATAAAAATTGAT
Found at i:21289097 original size:20 final size:20
Alignment explanation
Indices: 21289024--21289097 Score: 59
Period size: 18 Copynumber: 4.0 Consensus size: 20
21289014 TAATATTTTT
* *
21289024 TAAAAAATTA-TAAAATTTG
1 TAAAAAAATATTAAAATATG
* * *
21289043 TTAAAAATTACTAAAA-AT-
1 TAAAAAAATATTAAAATATG
*
21289061 TATAAAAAT-TT-AAATATG
1 TAAAAAAATATTAAAATATG
21289079 TAAAAAAATATTAAAATAT
1 TAAAAAAATATTAAAATAT
21289098 TACAATTCTA
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
16 3 0.07
17 3 0.07
18 14 0.33
19 12 0.28
20 11 0.26
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (20 bp):
TAAAAAAATATTAAAATATG
Found at i:21289376 original size:9 final size:9
Alignment explanation
Indices: 21289271--21289378 Score: 60
Period size: 9 Copynumber: 11.4 Consensus size: 9
21289261 ACTATTAATG
21289271 TTTTTATAA
1 TTTTTATAA
* *
21289280 ATTATA-AA
1 TTTTTATAA
*
21289288 TTTTTTGTAA
1 -TTTTTATAA
21289298 TTTTTATATA
1 TTTTTATA-A
21289308 TTTTT-TACA
1 TTTTTATA-A
*
21289317 TATTTA-AA
1 TTTTTATAA
21289325 TTTTTATAATA
1 TTTTTAT-A-A
*
21289336 CTTTTTATAC
1 -TTTTTATAA
*
21289346 TTTCTAGTAA
1 TTTTTA-TAA
*
21289356 TATTTAATAA
1 T-TTTTATAA
21289366 TTTTTATAA
1 TTTTTATAA
21289375 TTTT
1 TTTT
21289379 GTATTCATCT
Statistics
Matches: 74, Mismatches: 15, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
8 8 0.11
9 38 0.51
10 16 0.22
11 5 0.07
12 7 0.09
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (9 bp):
TTTTTATAA
Found at i:21296206 original size:15 final size:15
Alignment explanation
Indices: 21296186--21296219 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
21296176 TTCCTCTTCA
*
21296186 TTTTATTTTTTTATT
1 TTTTATGTTTTTATT
*
21296201 TTTTATGTTTTTCTT
1 TTTTATGTTTTTATT
21296216 TTTT
1 TTTT
21296220 TTTCCTTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.03, G:0.03, T:0.85
Consensus pattern (15 bp):
TTTTATGTTTTTATT
Found at i:21296822 original size:63 final size:63
Alignment explanation
Indices: 21296720--21296847 Score: 143
Period size: 63 Copynumber: 2.0 Consensus size: 63
21296710 TAAACTGGTA
* * * * * * *
21296720 TGGAATTAGAGGCACATAGGCTAGGGACATGGACGTGTGTCCAAG-CTGTGTAACTCACTATTT
1 TGGAATTAGAGGCACACAGGCCAGAGACACGGACATGTGT-CAAGACCGTGTAACTCACAATTT
* *
21296783 TGGAATTAGAGAG-ACACAGGCCAGAGACACGGGCATGTGTCTAGACCGTGTAACTCACAATTT
1 TGGAATTAGAG-GCACACAGGCCAGAGACACGGACATGTGTCAAGACCGTGTAACTCACAATTT
21296846 TG
1 TG
21296848 AGCCACACGG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
62 3 0.06
63 50 0.93
64 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (63 bp):
TGGAATTAGAGGCACACAGGCCAGAGACACGGACATGTGTCAAGACCGTGTAACTCACAATTT
Found at i:21299335 original size:20 final size:20
Alignment explanation
Indices: 21299305--21299348 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
21299295 AAATAACTTA
21299305 TTTTTGATAA-TAATTTCAATT
1 TTTTTGATAATTAA-TT-AATT
21299326 TTTTTG-TAATTAATTAATT
1 TTTTTGATAATTAATTAATT
21299345 TTTT
1 TTTT
21299349 ATATTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.36
20 5 0.23
21 9 0.41
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (20 bp):
TTTTTGATAATTAATTAATT
Found at i:21302495 original size:2 final size:2
Alignment explanation
Indices: 21302488--21302522 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
21302478 AAAGCAAGAA
21302488 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21302523 AAATAAAGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:21312367 original size:46 final size:46
Alignment explanation
Indices: 21312280--21312628 Score: 444
Period size: 46 Copynumber: 8.0 Consensus size: 46
21312270 TTTGACGTGA
* * * ** * *
21312280 TGCCATAGTGTCTTTCAA-CATGGTCTTACTCATTTTTTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
** * * *
21312325 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
21312371 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
21312417 TGCCATGGTATCTTTCAACAATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
21312463 TGCCATGGTATCTTTCAACCATAGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
21312501 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
21312547 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
21312585 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
21312629 AGAGCATACT
Statistics
Matches: 269, Mismatches: 18, Indels: 33
0.84 0.06 0.10
Matches are distributed among these distances:
38 65 0.24
39 2 0.01
40 6 0.02
41 2 0.01
43 2 0.01
44 6 0.02
45 18 0.07
46 168 0.62
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:21312509 original size:38 final size:38
Alignment explanation
Indices: 21312458--21312617 Score: 239
Period size: 38 Copynumber: 4.0 Consensus size: 38
21312448 CATTTCATAT
*
21312458 CAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
21312496 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A
21312541 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 -CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
21312580 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
21312618 TTTCATATCA
Statistics
Matches: 113, Mismatches: 1, Indels: 16
0.87 0.01 0.12
Matches are distributed among these distances:
38 70 0.62
39 1 0.01
40 3 0.03
41 1 0.01
43 1 0.01
44 3 0.03
45 1 0.01
46 33 0.29
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:21312553 original size:84 final size:84
Alignment explanation
Indices: 21312412--21312628 Score: 416
Period size: 84 Copynumber: 2.6 Consensus size: 84
21312402 CATCTCATAT
*
21312412 CAGGTTGCCATGGTATCTTTCAACAATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
21312477 TCAACCATAGTCTTACACA
66 TCAACCATAGTCTTACACA
21312496 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
*
21312561 TCAACCATGGTCTTACACA
66 TCAACCATAGTCTTACACA
21312580 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
21312629 AGAGCATACT
Statistics
Matches: 131, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 131 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (84 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
TCAACCATAGTCTTACACA
Found at i:21314843 original size:31 final size:32
Alignment explanation
Indices: 21314767--21314843 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 32
21314757 CTAATAAAAT
*
21314767 AATAATAAAATATCTTATTAAAGTATTAATAA
1 AATAATAAAATATCTAATTAAAGTATTAATAA
**
21314799 AATAAT-ATTTATCTAATTAAA-TAATT-ATAA
1 AATAATAAAATATCTAATTAAAGT-ATTAATAA
*
21314829 AATATTAAAATATCT
1 AATAATAAAATATCT
21314844 CTAGCATCAT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
30 10 0.27
31 21 0.57
32 6 0.16
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (32 bp):
AATAATAAAATATCTAATTAAAGTATTAATAA
Found at i:21319841 original size:34 final size:33
Alignment explanation
Indices: 21319785--21319867 Score: 94
Period size: 34 Copynumber: 2.5 Consensus size: 33
21319775 CCTCTCTCTG
* * * *
21319785 TTTCTTTTCTTTGTTTATTGATCGACTCTTCCATT
1 TTTCTTTTC-TTATTTATTGATCAACGCTT-CATC
*
21319820 TTTCTTTTCTTATTTATTGATCAACGCTTTATC
1 TTTCTTTTCTTATTTATTGATCAACGCTTCATC
*
21319853 TTTGTTTTCTTATTT
1 TTTCTTTTCTTATTT
21319868 GTGATGTAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
33 16 0.38
34 17 0.40
35 9 0.21
ACGTcount: A:0.13, C:0.17, G:0.07, T:0.63
Consensus pattern (33 bp):
TTTCTTTTCTTATTTATTGATCAACGCTTCATC
Found at i:21324523 original size:36 final size:36
Alignment explanation
Indices: 21324478--21324546 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
21324468 TTAGTTTGAG
*
21324478 TGCTCGAGTAATTTGGTTGAGGATTTAGAGTTCTTT
1 TGCTCGAGTAAGTTGGTTGAGGATTTAGAGTTCTTT
* * *
21324514 TGCTTGAGTAAGTTGGTTGAGGCTTTAGGGTTC
1 TGCTCGAGTAAGTTGGTTGAGGATTTAGAGTTC
21324547 CTTCAAAAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.17, C:0.09, G:0.32, T:0.42
Consensus pattern (36 bp):
TGCTCGAGTAAGTTGGTTGAGGATTTAGAGTTCTTT
Found at i:21328975 original size:11 final size:11
Alignment explanation
Indices: 21328955--21329008 Score: 67
Period size: 10 Copynumber: 5.0 Consensus size: 11
21328945 CTTTAACAAG
*
21328955 AATTACAAAAA
1 AATTTCAAAAA
21328966 AA-TTCAAAAA
1 AATTTCAAAAA
21328976 AATTTTCAAAAA
1 AA-TTTCAAAAA
*
21328988 ATTTTC-AAAA
1 AATTTCAAAAA
21328998 AATTTCAAAAA
1 AATTTCAAAAA
21329009 TTCTAAAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
10 18 0.49
11 10 0.27
12 9 0.24
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (11 bp):
AATTTCAAAAA
Found at i:21332102 original size:13 final size:13
Alignment explanation
Indices: 21332084--21332108 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21332074 TAATATATTT
21332084 ATTAATTAAAAAC
1 ATTAATTAAAAAC
21332097 ATTAATTAAAAA
1 ATTAATTAAAAA
21332109 AACTTGAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:21334796 original size:144 final size:144
Alignment explanation
Indices: 21334535--21334820 Score: 527
Period size: 144 Copynumber: 2.0 Consensus size: 144
21334525 AACTCTGACC
21334535 CTTCCTATTTTAACGTCTTTCCACTATCATCCACGAACCATAATGCTCATCTTCCACTCATCGTT
1 CTTCCTATTTTAACGTCTTTCCACTATCATCCACGAACCATAATGCTCATCTTCCACTCATCGTT
* *
21334600 GAAGACCACCCTTGTCACTAACCAGTGCTGCATGGCATATAACATCTCCCGTTGCTACATAAGCA
66 GAAGACCACCCTTGTCACTAACCAGTACTACATGGCATATAACATCTCCCGTTGCTACATAAGCA
21334665 TTATCACCTCCATA
131 TTATCACCTCCATA
*
21334679 CTTCCTCTTTTAACGTCTTTCCACTATCATCCACGAACCATAATGCTCATCTTCCACTCATCGTT
1 CTTCCTATTTTAACGTCTTTCCACTATCATCCACGAACCATAATGCTCATCTTCCACTCATCGTT
* *
21334744 GAAGACCACCCTTGTTACTAACCAGTACTACATGGCATATAACATCTTCCGTTGCTACATAAGCA
66 GAAGACCACCCTTGTCACTAACCAGTACTACATGGCATATAACATCTCCCGTTGCTACATAAGCA
21334809 TTATCACCTCCA
131 TTATCACCTCCA
21334821 AACATAGACA
Statistics
Matches: 137, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 137 1.00
ACGTcount: A:0.27, C:0.33, G:0.10, T:0.31
Consensus pattern (144 bp):
CTTCCTATTTTAACGTCTTTCCACTATCATCCACGAACCATAATGCTCATCTTCCACTCATCGTT
GAAGACCACCCTTGTCACTAACCAGTACTACATGGCATATAACATCTCCCGTTGCTACATAAGCA
TTATCACCTCCATA
Found at i:21336206 original size:46 final size:46
Alignment explanation
Indices: 21336139--21336314 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
21336129 TATTTGGGCA
21336139 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
21336185 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
21336230 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
21336278 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
21336315 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 64 0.58
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:21336294 original size:93 final size:93
Alignment explanation
Indices: 21336135--21336307 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
21336125 CGGATATTTG
* *
21336135 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
21336200 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
21336228 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
21336293 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
21336308 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:21337648 original size:19 final size:19
Alignment explanation
Indices: 21337621--21337666 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
21337611 GGGTGTTACA
* * *
21337621 ATAACTCTGAGTTATGGCT
1 ATAAATCTGACTTATGGCC
21337640 ATAAATCTGACTTATGGCC
1 ATAAATCTGACTTATGGCC
21337659 ATAAATCT
1 ATAAATCT
21337667 CGTATTTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (19 bp):
ATAAATCTGACTTATGGCC
Found at i:21341265 original size:15 final size:16
Alignment explanation
Indices: 21341245--21341279 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
21341235 TTGAGTTTTA
21341245 TATTTACTATTA-TAT
1 TATTTACTATTAGTAT
*
21341260 TATTTATTATTAGTAT
1 TATTTACTATTAGTAT
21341276 TATT
1 TATT
21341280 ATTTTCATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (16 bp):
TATTTACTATTAGTAT
Found at i:21341269 original size:3 final size:3
Alignment explanation
Indices: 21341252--21341331 Score: 51
Period size: 3 Copynumber: 27.0 Consensus size: 3
21341242 TTATATTTAC
* * * *
21341252 TAT TA- TAT TATT TAT TAT TAG TAT TAT TAT T-T TCAT TAT AAC TGT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT
* *
21341297 CAT CAT TAT TAT TAT T-T TATT TAT TAT TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
21341332 ACTATTATAA
Statistics
Matches: 60, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
2 8 0.13
3 44 0.73
4 8 0.13
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:21341276 original size:9 final size:8
Alignment explanation
Indices: 21341252--21341340 Score: 51
Period size: 9 Copynumber: 10.9 Consensus size: 8
21341242 TTATATTTAC
21341252 TATTATAT
1 TATTATAT
21341260 TATT-TAT
1 TATTATAT
21341267 TATTAGTAT
1 TATTA-TAT
*
21341276 TATTATTT
1 TATTATAT
*
21341284 TCATTATAAC
1 T-ATTAT-AT
* *
21341294 TGTCATCAT
1 TATTAT-AT
21341303 TATTATTAT
1 TATTA-TAT
21341312 T-TTAT-T
1 TATTATAT
21341318 TATTATTAT
1 TATTA-TAT
*
21341327 T-TTATAC
1 TATTATAT
21341334 TATTATA
1 TATTATA
21341341 AGCATTATAT
Statistics
Matches: 62, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
6 2 0.03
7 14 0.23
8 19 0.31
9 25 0.40
10 2 0.03
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (8 bp):
TATTATAT
Found at i:21341320 original size:15 final size:15
Alignment explanation
Indices: 21341302--21341331 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
21341292 ACTGTCATCA
21341302 TTATTATTATTTTAT
1 TTATTATTATTTTAT
21341317 TTATTATTATTTTAT
1 TTATTATTATTTTAT
21341332 ACTATTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTATTATTATTTTAT
Found at i:21341482 original size:21 final size:21
Alignment explanation
Indices: 21341453--21341510 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
21341443 AATGCATTAA
*
21341453 TATTATTATCTTTTA-TTTTGT
1 TATTATTAT-TATTATTTTTGT
*
21341474 TATTGTTATTATTATTTTTGT
1 TATTATTATTATTATTTTTGT
* *
21341495 TACTATAATTATTATT
1 TATTATTATTATTATT
21341511 ATCATACTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 4 0.13
21 27 0.87
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.67
Consensus pattern (21 bp):
TATTATTATTATTATTTTTGT
Found at i:21341800 original size:3 final size:3
Alignment explanation
Indices: 21341792--21341851 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
21341782 GACTTTGTCA
21341792 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
21341840 TAT TAT TAT TAT
1 TAT TAT TAT TAT
21341852 CATCATCATC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:21344194 original size:19 final size:20
Alignment explanation
Indices: 21344153--21344197 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
21344143 CGTCTCTTTG
*
21344153 TGCATT-CATTTCATGCATC
1 TGCATTGCATTTCATGCATA
*
21344172 TGCATTGCATTTCAT-TATA
1 TGCATTGCATTTCATGCATA
21344191 TGCATTG
1 TGCATTG
21344198 AATATCAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.44
Consensus pattern (20 bp):
TGCATTGCATTTCATGCATA
Found at i:21346000 original size:15 final size:15
Alignment explanation
Indices: 21345980--21346030 Score: 52
Period size: 14 Copynumber: 3.3 Consensus size: 15
21345970 TCTAATAATT
21345980 AATAATTTTAATAGA
1 AATAATTTTAATAGA
21345995 AATAA-TTTAATA-A
1 AATAATTTTAATAGA
*
21346008 AATGATATTTTGGATAGA
1 AAT-A-ATTTT-AATAGA
21346026 AATAA
1 AATAA
21346031 AATGGGGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
13 4 0.13
14 8 0.27
15 6 0.20
16 4 0.13
17 4 0.13
18 4 0.13
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.37
Consensus pattern (15 bp):
AATAATTTTAATAGA
Found at i:21347617 original size:20 final size:20
Alignment explanation
Indices: 21347565--21347619 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
21347555 TTCTAGGGCT
** *
21347565 ATTTTTTTTAACTTTAGTTT
1 ATTTTTTTTATTTTTAGTTA
*
21347585 ATTTTTTTCATTTTTAGTTA
1 ATTTTTTTTATTTTTAGTTA
21347605 ATTTTTTTTATTTTT
1 ATTTTTTTTATTTTT
21347620 GTCAGTGTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (20 bp):
ATTTTTTTTATTTTTAGTTA
Found at i:21355636 original size:105 final size:105
Alignment explanation
Indices: 21355467--21355678 Score: 397
Period size: 105 Copynumber: 2.0 Consensus size: 105
21355457 CATAAATAAT
* *
21355467 GAAGCTTCTGACTGTAGCAAAAATGGAAGAAACACGAAAACAAAACAATAAAACACAGAGTAGGT
1 GAAGCTTCTGAATGTAGCAAAAATGGAAGAAACACGAAAACAAAACAATAAAACACAGAATAGGT
21355532 AGAGTTATCACAGATGCAAGCCTCTGATAAATATGAAGGC
66 AGAGTTATCACAGATGCAAGCCTCTGATAAATATGAAGGC
*
21355572 GAAGCTTCTGAATGTAGCAAAAATGGAAGAAACATGAAAACAAAACAATAAAACACAGAATAGGT
1 GAAGCTTCTGAATGTAGCAAAAATGGAAGAAACACGAAAACAAAACAATAAAACACAGAATAGGT
21355637 AGAGTTATCACAGATGCAAGCCTCTGATAAATATGAAGGC
66 AGAGTTATCACAGATGCAAGCCTCTGATAAATATGAAGGC
21355677 GA
1 GA
21355679 TATACAGTAG
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 104 1.00
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.17
Consensus pattern (105 bp):
GAAGCTTCTGAATGTAGCAAAAATGGAAGAAACACGAAAACAAAACAATAAAACACAGAATAGGT
AGAGTTATCACAGATGCAAGCCTCTGATAAATATGAAGGC
Found at i:21363373 original size:16 final size:17
Alignment explanation
Indices: 21363342--21363374 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
21363332 TTTATAAGTA
21363342 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
21363359 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
21363375 GCACTATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:21364025 original size:46 final size:46
Alignment explanation
Indices: 21363655--21364010 Score: 493
Period size: 46 Copynumber: 7.7 Consensus size: 46
21363645 TTATCTTTGA
* * * * *
21363655 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
* *
21363701 CATATTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
** *
21363747 CATACTGCCATGGTATCTTTCAACTATGGTCTTATTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
21363793 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* **
21363839 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*
21363885 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* ** *
21363931 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*
21363977 CAGGTCT-CCATGGTATCTTTCAACCATGGTCTTA
1 CATGT-TGCCATGGTATCTTTCAACCATGGTCTTA
21364011 CACATTTTAT
Statistics
Matches: 282, Mismatches: 24, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
45 8 0.03
46 269 0.95
47 5 0.02
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:21368806 original size:2 final size:2
Alignment explanation
Indices: 21368799--21368827 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
21368789 ATATAGGGAA
21368799 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21368828 ACCTCTGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21369919 original size:22 final size:21
Alignment explanation
Indices: 21369887--21369961 Score: 59
Period size: 22 Copynumber: 3.6 Consensus size: 21
21369877 ATATATCTAG
21369887 TAAA-ATATATGTGGTAAATTA
1 TAAATATATATGTGGTAAA-TA
21369908 TAAATATATA--TGGTAACATA
1 TAAATATATATGTGGTAA-ATA
* * *
21369928 -AATTATATTTTATGGTAAAATA
1 TAAATATA-TATGTGGT-AAATA
21369950 TAAATATATATG
1 TAAATATATATG
21369962 GTAATATATA
Statistics
Matches: 42, Mismatches: 5, Indels: 13
0.70 0.08 0.22
Matches are distributed among these distances:
19 6 0.14
20 9 0.21
21 5 0.12
22 14 0.33
23 8 0.19
ACGTcount: A:0.48, C:0.01, G:0.11, T:0.40
Consensus pattern (21 bp):
TAAATATATATGTGGTAAATA
Found at i:21369963 original size:20 final size:20
Alignment explanation
Indices: 21369889--21369971 Score: 87
Period size: 20 Copynumber: 4.0 Consensus size: 20
21369879 ATATCTAGTA
* *
21369889 AAATATATGTGGTAAATTAT
1 AAATATATATGGTAAAATAT
*
21369909 AAATATATATGGTAACATA-
1 AAATATATATGGTAAAATAT
*
21369928 AATTATATTTTATGGTAAAATAT
1 AA--ATA-TATATGGTAAAATAT
*
21369951 AAATATATATGGTAATATAT
1 AAATATATATGGTAAAATAT
21369971 A
1 A
21369972 TGTATGTGTG
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
19 2 0.04
20 30 0.58
21 6 0.12
22 12 0.23
23 2 0.04
ACGTcount: A:0.48, C:0.01, G:0.11, T:0.40
Consensus pattern (20 bp):
AAATATATATGGTAAAATAT
Found at i:21374197 original size:17 final size:18
Alignment explanation
Indices: 21374172--21374205 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
21374162 TAGAATTGGG
*
21374172 TTGAGAAAATT-ATTTAA
1 TTGAAAAAATTAATTTAA
21374189 TTGAAAAAATTAATTTA
1 TTGAAAAAATTAATTTA
21374206 TCTAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (18 bp):
TTGAAAAAATTAATTTAA
Found at i:21375058 original size:11 final size:11
Alignment explanation
Indices: 21375042--21375082 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
21375032 TTTTTCCTTT
*
21375042 AATCAAACAAG
1 AATCAAGCAAG
21375053 AATCAAGCTAA-
1 AATCAAGC-AAG
21375064 AATCAAGCAAG
1 AATCAAGCAAG
21375075 AATCAAGC
1 AATCAAGC
21375083 TCTTTCCACA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 2 0.07
11 23 0.85
12 2 0.07
ACGTcount: A:0.56, C:0.20, G:0.12, T:0.12
Consensus pattern (11 bp):
AATCAAGCAAG
Found at i:21375074 original size:22 final size:22
Alignment explanation
Indices: 21375042--21375083 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
21375032 TTTTTCCTTT
21375042 AATCAAACAAGAATCAAGCTAA
1 AATCAAACAAGAATCAAGCTAA
*
21375064 AATCAAGCAAGAATCAAGCT
1 AATCAAACAAGAATCAAGCT
21375084 CTTTCCACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.19, G:0.12, T:0.14
Consensus pattern (22 bp):
AATCAAACAAGAATCAAGCTAA
Found at i:21379327 original size:64 final size:64
Alignment explanation
Indices: 21379244--21379432 Score: 281
Period size: 64 Copynumber: 3.0 Consensus size: 64
21379234 AGTAACTTCG
* * * *
21379244 CATATTCTCGTTGACAAGCTAATGTTCTTGAAGACAAAAGAAAGTGTAAGAGATGACCTATTAA
1 CATATACTTGTTGACAAGCTAATGTTCTTGAAGACAAAAGAAAGTGCAAGAGAGGACCTATTAA
* * * *
21379308 CATATGCTTGTTGACAAGCTAATGTTATTGAAGACAAAAGAAAGTGCAAGAGAGGACTTATTCA
1 CATATACTTGTTGACAAGCTAATGTTCTTGAAGACAAAAGAAAGTGCAAGAGAGGACCTATTAA
*
21379372 CATATACTTGTTGACAAGCTAATG-TCATTGAAGAAAAAAGAAAGTGCAAGAGAGGACCTAT
1 CATATACTTGTTGACAAGCTAATGTTC-TTGAAGACAAAAGAAAGTGCAAGAGAGGACCTAT
21379433 GTAATAACCT
Statistics
Matches: 113, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
63 1 0.01
64 112 0.99
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.26
Consensus pattern (64 bp):
CATATACTTGTTGACAAGCTAATGTTCTTGAAGACAAAAGAAAGTGCAAGAGAGGACCTATTAA
Found at i:21380706 original size:24 final size:25
Alignment explanation
Indices: 21380652--21380715 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
21380642 CAGACACACC
* *
21380652 ACAGCTCGCATGAGCTTTCCATTAT
1 ACAGCTCACATGAGCTTCCCATTAT
*
21380677 ATAGCTCACATGAGCTTCCCATT-T
1 ACAGCTCACATGAGCTTCCCATTAT
*
21380701 ACAGCTCATATGAGC
1 ACAGCTCACATGAGC
21380716 ATACAAGTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 14 0.41
25 20 0.59
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (25 bp):
ACAGCTCACATGAGCTTCCCATTAT
Found at i:21384695 original size:18 final size:18
Alignment explanation
Indices: 21384649--21384684 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
21384639 AGGAAAAACA
21384649 ACCATATAAGCAACTAAT
1 ACCATATAAGCAACTAAT
21384667 ACCATATAAGCAACTAAT
1 ACCATATAAGCAACTAAT
21384685 GCTTAGTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (18 bp):
ACCATATAAGCAACTAAT
Found at i:21387206 original size:3 final size:3
Alignment explanation
Indices: 21387198--21387229 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
21387188 TCCAAAGAGT
21387198 AAG AAG AAGG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AA-G AAG AAG AAG AAG AAG AAG AAG A
21387230 GATTAATCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:21392446 original size:7 final size:7
Alignment explanation
Indices: 21392434--21392511 Score: 120
Period size: 7 Copynumber: 11.0 Consensus size: 7
21392424 AATCTAAATC
21392434 AAACCCT
1 AAACCCT
21392441 AAACCCT
1 AAACCCT
*
21392448 AAATCCT
1 AAACCCT
21392455 AAACCCT
1 AAACCCT
21392462 AAACCCT
1 AAACCCT
*
21392469 AAACCAT
1 AAACCCT
21392476 AAACCCT
1 AAACCCT
21392483 AAACCCT
1 AAACCCT
*
21392490 AAAACCT
1 AAACCCT
21392497 AAAACCCT
1 -AAACCCT
21392505 AAACCCT
1 AAACCCT
21392512 GAAGAATATC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
7 58 0.91
8 6 0.09
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.15
Consensus pattern (7 bp):
AAACCCT
Found at i:21396592 original size:61 final size:61
Alignment explanation
Indices: 21396475--21396593 Score: 143
Period size: 60 Copynumber: 2.0 Consensus size: 61
21396465 TGGGCGTAAG
* * * *
21396475 CAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAATAT
1 CAGAGTTAACTGGGCCTTAGACCATATCAATATCAATCTAGGCCATAGCCCATTACAATAT
* * *
21396536 CAGAG-TATACTGGGCC-TAGACCATATCAGTGTCAATCTAGGCCGTAGCCCTATTACAA
1 CAGAGTTA-ACTGGGCCTTAGACCATATCAATATCAATCTAGGCCATAGCCC-ATTACAA
21396594 GTCGAGATAT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
60 30 0.61
61 19 0.39
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (61 bp):
CAGAGTTAACTGGGCCTTAGACCATATCAATATCAATCTAGGCCATAGCCCATTACAATAT
Found at i:21396657 original size:19 final size:20
Alignment explanation
Indices: 21396614--21396659 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
21396604 GTTGGGCCTT
21396614 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
21396634 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
21396653 GCCCATA
1 GCCCATA
21396660 ACAAAACAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:21398479 original size:104 final size:104
Alignment explanation
Indices: 21398355--21398563 Score: 409
Period size: 104 Copynumber: 2.0 Consensus size: 104
21398345 CTTAAGCTCT
*
21398355 ATCACATGCCCGGTACATGCACACATAAAATAAAAGTAACAACATGCTTACCTTGTGACTTGAAC
1 ATCACATGCCCGGCACATGCACACATAAAATAAAAGTAACAACATGCTTACCTTGTGACTTGAAC
21398420 TCTGGCTCCCCCTAAACATCCACACGTCACTCCCCAAAC
66 TCTGGCTCCCCCTAAACATCCACACGTCACTCCCCAAAC
21398459 ATCACATGCCCGGCACATGCACACATAAAATAAAAGTAACAACATGCTTACCTTGTGACTTGAAC
1 ATCACATGCCCGGCACATGCACACATAAAATAAAAGTAACAACATGCTTACCTTGTGACTTGAAC
21398524 TCTGGCTCCCCCTAAACATCCACACGTCACTCCCCAAAC
66 TCTGGCTCCCCCTAAACATCCACACGTCACTCCCCAAAC
21398563 A
1 A
21398564 CTTAGGTGGC
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 104 1.00
ACGTcount: A:0.34, C:0.34, G:0.11, T:0.21
Consensus pattern (104 bp):
ATCACATGCCCGGCACATGCACACATAAAATAAAAGTAACAACATGCTTACCTTGTGACTTGAAC
TCTGGCTCCCCCTAAACATCCACACGTCACTCCCCAAAC
Found at i:21398975 original size:46 final size:46
Alignment explanation
Indices: 21398908--21399130 Score: 349
Period size: 46 Copynumber: 4.8 Consensus size: 46
21398898 GCTCTCTGAT
**
21398908 ATGAAATGTCTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
*
21398954 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
*
21399000 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
* *
21399046 ATGAAATGAGCAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
* * *
21399092 A-GAAAGTGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 ATGAAA-TGAGTAAGACCATGGTTGAAAGATACCATGGCA
21399131 TCATGTCGAA
Statistics
Matches: 166, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 162 0.98
ACGTcount: A:0.40, C:0.16, G:0.25, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
Found at i:21399276 original size:26 final size:26
Alignment explanation
Indices: 21399219--21399313 Score: 70
Period size: 26 Copynumber: 3.6 Consensus size: 26
21399209 TCAAATGATG
* *
21399219 AATGGTTTTATGAATTGGTTATACAA
1 AATGGTTGTATGAAATGGTTATACAA
21399245 AATGGTTGTATGAAAT-GTT-TACAA
1 AATGGTTGTATGAAATGGTTATACAA
** * *
21399269 TAATTGGTCATATGGAAAT-ATATGTACAA
1 -AA-TGGTTGTAT-GAAATGGT-TATACAA
*
21399298 AATAGTTGTATGAAAT
1 AATGGTTGTATGAAAT
21399314 AATTAAGAAG
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
24 5 0.09
25 5 0.09
26 26 0.46
27 12 0.21
28 3 0.05
29 5 0.09
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.38
Consensus pattern (26 bp):
AATGGTTGTATGAAATGGTTATACAA
Found at i:21401510 original size:5 final size:5
Alignment explanation
Indices: 21401481--21401530 Score: 57
Period size: 5 Copynumber: 10.0 Consensus size: 5
21401471 TATAAATTTA
* * *
21401481 ATTAT GTTAA ATTAT AATA- ATTAT ATTAT AATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT -ATTAT ATTAT ATTAT ATTAT
21401531 GAAATAAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
4 3 0.08
5 29 0.78
6 5 0.14
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (5 bp):
ATTAT
Found at i:21401960 original size:13 final size:13
Alignment explanation
Indices: 21401933--21401965 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
21401923 AAATAAATAT
21401933 TTATTATATTATA
1 TTATTATATTATA
21401946 TTATT-TATTATTA
1 TTATTATATTA-TA
21401959 TTATTAT
1 TTATTAT
21401966 TGTTAACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.28
13 12 0.67
14 1 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTATTATATTATA
Found at i:21402861 original size:21 final size:21
Alignment explanation
Indices: 21402835--21402941 Score: 92
Period size: 21 Copynumber: 5.1 Consensus size: 21
21402825 GGATTTGCCG
21402835 ATCAGGCACTTTCTGTGTCGT
1 ATCAGGCACTTTCTGTGTCGT
* *
21402856 ATCAGGCAC-CTCGTGTGTCAT
1 ATCAGGCACTTTC-TGTGTCGT
* * * *
21402877 TTCAAGCACTTTATATGTCGT
1 ATCAGGCACTTTCTGTGTCGT
21402898 ATCAGGCAC-TTCGTGTGTCGT
1 ATCAGGCACTTTC-TGTGTCGT
* * **
21402919 TTCAAGCACTTAATGTGTCGT
1 ATCAGGCACTTTCTGTGTCGT
21402940 AT
1 AT
21402942 ATTGCTTCTG
Statistics
Matches: 65, Mismatches: 17, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
20 4 0.06
21 59 0.91
22 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (21 bp):
ATCAGGCACTTTCTGTGTCGT
Found at i:21402899 original size:42 final size:42
Alignment explanation
Indices: 21402840--21402941 Score: 159
Period size: 42 Copynumber: 2.4 Consensus size: 42
21402830 TGCCGATCAG
*
21402840 GCACTTTCTGTGTCGTATCAGGCACCTCGTGTGTCATTTCAA
1 GCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCATTTCAA
* * *
21402882 GCACTTTATATGTCGTATCAGGCACTTCGTGTGTCGTTTCAA
1 GCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCATTTCAA
*
21402924 GCACTTAATGTGTCGTAT
1 GCACTTTATGTGTCGTAT
21402942 ATTGCTTCTG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (42 bp):
GCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCATTTCAA
Found at i:21407264 original size:14 final size:13
Alignment explanation
Indices: 21407245--21407274 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
21407235 TTGTGTGTTC
21407245 TTTATTTTATTTAT
1 TTTATTTTATTT-T
21407259 TTTATTTTATTTT
1 TTTATTTTATTTT
21407272 TTT
1 TTT
21407275 CACAGATGCG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTATTTTATTTT
Found at i:21408701 original size:17 final size:19
Alignment explanation
Indices: 21408681--21408730 Score: 50
Period size: 22 Copynumber: 2.5 Consensus size: 19
21408671 CCAAATAATT
21408681 TTTAAAAAAC-T-GTTTCA
1 TTTAAAAAACTTAGTTTCA
21408698 TTTACGAAAAATCTTAGTTTCA
1 TTTA--AAAAA-CTTAGTTTCA
21408720 TTTAAGAAAAC
1 TTTAA-AAAAC
21408731 CATACTTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
17 4 0.15
19 5 0.19
20 3 0.11
21 5 0.19
22 10 0.37
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (19 bp):
TTTAAAAAACTTAGTTTCA
Found at i:21415479 original size:24 final size:24
Alignment explanation
Indices: 21415446--21415512 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
21415436 TACATCATAG
21415446 AATACGCCACAAAGGCAATTACAA
1 AATACGCCACAAAGGCAATTACAA
* * * *
21415470 AATACACCACAGAGGCATTTACAG
1 AATACGCCACAAAGGCAATTACAA
21415494 AATACGCCACAAAGGCAAT
1 AATACGCCACAAAGGCAAT
21415513 CATAGATAAC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.46, C:0.25, G:0.15, T:0.13
Consensus pattern (24 bp):
AATACGCCACAAAGGCAATTACAA
Found at i:21418435 original size:60 final size:60
Alignment explanation
Indices: 21418369--21418489 Score: 233
Period size: 60 Copynumber: 2.0 Consensus size: 60
21418359 AAAACGCACT
21418369 TTGAATCACTCAATTTCGAGTCTAAAAGCTTAAGTTATGATCATTTTACTGAAGACTATG
1 TTGAATCACTCAATTTCGAGTCTAAAAGCTTAAGTTATGATCATTTTACTGAAGACTATG
*
21418429 TTGAATCACTCAATTTCGAGTCTGAAAGCTTAAGTTATGATCATTTTACTGAAGACTATG
1 TTGAATCACTCAATTTCGAGTCTAAAAGCTTAAGTTATGATCATTTTACTGAAGACTATG
21418489 T
1 T
21418490 GAGCAGAATC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (60 bp):
TTGAATCACTCAATTTCGAGTCTAAAAGCTTAAGTTATGATCATTTTACTGAAGACTATG
Found at i:21422617 original size:20 final size:21
Alignment explanation
Indices: 21422594--21422639 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
21422584 ATCCTGACAT
*
21422594 TAAATCCTAAAT-TCGAACCC
1 TAAATCATAAATCTCGAACCC
*
21422614 TAAATCATGAATCTCGAACCC
1 TAAATCATAAATCTCGAACCC
*
21422635 CAAAT
1 TAAAT
21422640 ACAGATTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.41, C:0.28, G:0.07, T:0.24
Consensus pattern (21 bp):
TAAATCATAAATCTCGAACCC
Found at i:21422784 original size:7 final size:7
Alignment explanation
Indices: 21422774--21422806 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
21422764 TTGGGTTTAG
21422774 GGTTCGA
1 GGTTCGA
21422781 GGTTCGA
1 GGTTCGA
21422788 GG-TCTGA
1 GGTTC-GA
21422795 GGTTCGA
1 GGTTCGA
21422802 GGTTC
1 GGTTC
21422807 AAAGTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 2 0.08
7 20 0.83
8 2 0.08
ACGTcount: A:0.12, C:0.15, G:0.42, T:0.30
Consensus pattern (7 bp):
GGTTCGA
Found at i:21423200 original size:19 final size:19
Alignment explanation
Indices: 21423172--21423212 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
21423162 TATTTTTCTA
21423172 CTTTGATATCTAAACTTTT
1 CTTTGATATCTAAACTTTT
*
21423191 CTTTGGTATCTAAACTTTT
1 CTTTGATATCTAAACTTTT
21423210 CTT
1 CTT
21423213 GTCCCAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.22, C:0.17, G:0.07, T:0.54
Consensus pattern (19 bp):
CTTTGATATCTAAACTTTT
Found at i:21423562 original size:23 final size:23
Alignment explanation
Indices: 21423536--21423609 Score: 76
Period size: 23 Copynumber: 3.1 Consensus size: 23
21423526 TTAAAAATAA
*
21423536 AAAAAATTATATATAATAATTAT
1 AAAAAATTATAAATAATAATTAT
* * *
21423559 AAAAAATTAAAAATAATATTTTT
1 AAAAAATTATAAATAATAATTAT
* *
21423582 ATAAAATTTTAGAATATATAATTAT
1 AAAAAATTATA-AATA-ATAATTAT
21423607 AAA
1 AAA
21423610 CTTTTTTTAT
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
23 27 0.69
24 4 0.10
25 8 0.21
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.39
Consensus pattern (23 bp):
AAAAAATTATAAATAATAATTAT
Found at i:21431188 original size:27 final size:27
Alignment explanation
Indices: 21431131--21431189 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
21431121 TGTATTGGTG
**
21431131 GCTTTGCCACATATACTATCACTGGTG
1 GCTTTGCCACATATACTATCACTGGCA
*
21431158 GCTTTGCCATATATACTAAT-ACTGGCA
1 GCTTTGCCACATATACT-ATCACTGGCA
21431185 GCTTT
1 GCTTT
21431190 ACTGTGTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (27 bp):
GCTTTGCCACATATACTATCACTGGCA
Found at i:21431251 original size:26 final size:26
Alignment explanation
Indices: 21431177--21431251 Score: 71
Period size: 25 Copynumber: 2.9 Consensus size: 26
21431167 TATATACTAA
* *
21431177 TACTGGCAGCTTTACTGTGTTATTGT
1 TACTGGCAGCTTTACTGCGTTATTAT
* ** **
21431203 TACT-ACAATTTTACTGCAATATTAT
1 TACTGGCAGCTTTACTGCGTTATTAT
*
21431228 TACTGGCAGCTTTGCTGCGTTATT
1 TACTGGCAGCTTTACTGCGTTATT
21431252 GGTGTGTTGC
Statistics
Matches: 35, Mismatches: 13, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
25 18 0.51
26 17 0.49
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.44
Consensus pattern (26 bp):
TACTGGCAGCTTTACTGCGTTATTAT
Found at i:21433695 original size:73 final size:73
Alignment explanation
Indices: 21433608--21433750 Score: 268
Period size: 73 Copynumber: 2.0 Consensus size: 73
21433598 TTATCAGGGC
* *
21433608 ATCGATACCTTAGTACCAAAATGATCAAAAACTTCCATTTAGTGCCTATTTCATTCCCAACCAAA
1 ATCGATACCTTAGTACCAAAATGATCAAAAACTTCCATTTAGTGCCCATTTCATGCCCAACCAAA
21433673 TTTTGGGT
66 TTTTGGGT
21433681 ATCGATACCTTAGTACCAAAATGATCAAAAACTTCCATTTAGTGCCCATTTCATGCCCAACCAAA
1 ATCGATACCTTAGTACCAAAATGATCAAAAACTTCCATTTAGTGCCCATTTCATGCCCAACCAAA
21433746 TTTTG
66 TTTTG
21433751 ATTCAAAAGA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.31
Consensus pattern (73 bp):
ATCGATACCTTAGTACCAAAATGATCAAAAACTTCCATTTAGTGCCCATTTCATGCCCAACCAAA
TTTTGGGT
Found at i:21434590 original size:66 final size:65
Alignment explanation
Indices: 21434471--21434639 Score: 230
Period size: 66 Copynumber: 2.6 Consensus size: 65
21434461 TTCAGTGCTT
* * * * * *
21434471 ATCGATATATTTGGCACCCAGTGTCTCATCAGATATATCGAAGTAATTTAATTGCACCCAACGCT
1 ATCGATGTATTTGGCACCCAGTG-CTCATCGGATAAATCGAAGTAAGTCAATTGCACCCAACACT
*
21434536 G
65 C
* *
21434537 ATTGATGTATTTGGCACCAAGTGCATCATCGGATAAATCGAAGTAAGTCAATTGCACCCAACACT
1 ATCGATGTATTTGGCACCCAGTGC-TCATCGGATAAATCGAAGTAAGTCAATTGCACCCAACACT
21434602 C
65 C
21434603 ATCGATGTATTTGGCACCCAGTGCCTCATCGGATAAA
1 ATCGATGTATTTGGCACCCAGTG-CTCATCGGATAAA
21434640 CTGAAATTAT
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
65 1 0.01
66 88 0.98
67 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (65 bp):
ATCGATGTATTTGGCACCCAGTGCTCATCGGATAAATCGAAGTAAGTCAATTGCACCCAACACTC
Found at i:21434658 original size:29 final size:29
Alignment explanation
Indices: 21434623--21434679 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
21434613 TTGGCACCCA
*
21434623 GTGCCTCATCGGATAAACTGAAATTATTG
1 GTGCCTCATCGAATAAACTGAAATTATTG
* *
21434652 GTGCCTCATTGAATAAACTGAAGTTATT
1 GTGCCTCATCGAATAAACTGAAATTATT
21434680 CAATTACACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (29 bp):
GTGCCTCATCGAATAAACTGAAATTATTG
Found at i:21436803 original size:16 final size:15
Alignment explanation
Indices: 21436778--21436807 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
21436768 GTCATATAAT
21436778 AAATATAAATTATTA
1 AAATATAAATTATTA
21436793 AAATAATAAATTATT
1 AAAT-ATAAATTATT
21436808 TAATATTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AAATATAAATTATTA
Found at i:21436839 original size:13 final size:14
Alignment explanation
Indices: 21436823--21436864 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
21436813 TTTCAATTTT
21436823 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
21436836 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
21436851 ATTTTAAATAATAT
1 ATTTT-AATAATAT
21436865 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:21436849 original size:16 final size:16
Alignment explanation
Indices: 21436827--21436863 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
21436817 AATTTTATTT
21436827 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
21436844 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
21436859 TAATA
1 TAATA
21436864 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:21437447 original size:14 final size:14
Alignment explanation
Indices: 21437410--21437439 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
21437400 TTAGAAAAGT
21437410 AAATCATTTTCCAG
1 AAATCATTTTCCAG
21437424 AAATCATTTTCC-G
1 AAATCATTTTCCAG
21437437 AAA
1 AAA
21437440 CTTATTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:21438419 original size:21 final size:21
Alignment explanation
Indices: 21438393--21438445 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
21438383 AACAGCGGTG
* *
21438393 GCGGTGAGATTGGTTACTGTA
1 GCGGTGAGATTGGATACTATA
21438414 GCGGTGAGATTGGATACTATA
1 GCGGTGAGATTGGATACTATA
21438435 GCGGTGAGATT
1 GCGGTGAGATT
21438446 AGAAACAGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.23, C:0.09, G:0.38, T:0.30
Consensus pattern (21 bp):
GCGGTGAGATTGGATACTATA
Found at i:21440494 original size:32 final size:32
Alignment explanation
Indices: 21440455--21440614 Score: 239
Period size: 32 Copynumber: 5.0 Consensus size: 32
21440445 CATAAAAAAT
* *
21440455 ATCATACATTAGGTTTACCTATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* *
21440487 ATCATACATTAGTTTTGCATATAAAAAAGTAT
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* * *
21440519 ATCATACATTCGGTTCACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* *
21440551 ATCATACATTAGTTTTGCATATGAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
21440583 ATCATACATTAGTTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
21440615 CATAGTTATA
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 112 1.00
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (32 bp):
ATCATACATTAGTTTTACATATAAAAAAGTAG
Found at i:21440526 original size:64 final size:64
Alignment explanation
Indices: 21440453--21440614 Score: 270
Period size: 64 Copynumber: 2.5 Consensus size: 64
21440443 AACATAAAAA
*
21440453 ATATCATACATTAGGTTTACCTATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
1 ATATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
* * *
21440517 ATATCATACATTCGGTTCACATATAAAAAAGTAGATCATACATTAGTTTTGCATATGAAAAAGT
1 ATATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
* *
21440581 AGATCATACATTAGTTTTACATATAAAAAAGTAG
1 ATATCATACATTAGGTTTACATATAAAAAAGTAG
21440615 CATAGTTATA
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 90 1.00
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (64 bp):
ATATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
Found at i:21445684 original size:14 final size:13
Alignment explanation
Indices: 21445653--21445690 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
21445643 TAGAAAAATA
*
21445653 ATAAATATTTGAT
1 ATAAATATTTTAT
21445666 A-AAATATTTTATT
1 ATAAATATTTTA-T
21445679 ATAAATATTTTA
1 ATAAATATTTTA
21445691 ATCAATTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 9 0.41
13 3 0.14
14 10 0.45
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
ATAAATATTTTAT
Found at i:21446191 original size:18 final size:18
Alignment explanation
Indices: 21446164--21446202 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
21446154 AACTTTTTTG
*
21446164 TTAATTTAATTACTTT-AA
1 TTAATATAATTA-TTTGAA
21446182 TTAATATAATTATTTGAA
1 TTAATATAATTATTTGAA
21446200 TTA
1 TTA
21446203 GTTATTATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (18 bp):
TTAATATAATTATTTGAA
Found at i:21447196 original size:21 final size:20
Alignment explanation
Indices: 21447172--21447231 Score: 56
Period size: 21 Copynumber: 3.1 Consensus size: 20
21447162 TTTTAATAAG
21447172 ATTATTATTAAAAATAATTTA
1 ATTATTATT-AAAATAATTTA
* *
21447193 ATTA-TATT---TTAATATA
1 ATTATTATTAAAATAATTTA
21447209 ATTATTATTAAATATAATTTA
1 ATTATTATTAAA-ATAATTTA
21447230 AT
1 AT
21447232 AATATTTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
16 10 0.33
17 4 0.13
20 4 0.13
21 12 0.40
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
ATTATTATTAAAATAATTTA
Found at i:21447203 original size:37 final size:37
Alignment explanation
Indices: 21447156--21447251 Score: 149
Period size: 37 Copynumber: 2.6 Consensus size: 37
21447146 TGTTATTGTT
*
21447156 ATTAAATTTTAATA-AGATTATTATTAAAAATAATTTA
1 ATTATATTTTAATATA-ATTATTATTAAAAATAATTTA
*
21447193 ATTATATTTTAATATAATTATTATTAAATATAATTTA
1 ATTATATTTTAATATAATTATTATTAAAAATAATTTA
*
21447230 ATAATATTTTAATATAATTATT
1 ATTATATTTTAATATAATTATT
21447252 TTTATATTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
37 54 0.98
38 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (37 bp):
ATTATATTTTAATATAATTATTATTAAAAATAATTTA
Found at i:21447210 original size:16 final size:16
Alignment explanation
Indices: 21447186--21447255 Score: 61
Period size: 16 Copynumber: 4.1 Consensus size: 16
21447176 TTATTAAAAA
*
21447186 TAATTTAATTATATTT
1 TAATATAATTATATTT
21447202 TAATATAATTATTATTAAAT
1 TAATATAATTA-TATT---T
* *
21447222 ATAATTTAATAATATTT
1 -TAATATAATTATATTT
21447239 TAATATAATTAT-TTT
1 TAATATAATTATATTT
21447254 TA
1 TA
21447256 TATTAAATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
15 5 0.11
16 20 0.45
17 5 0.11
20 5 0.11
21 9 0.20
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TAATATAATTATATTT
Found at i:21448459 original size:20 final size:20
Alignment explanation
Indices: 21448434--21448473 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
21448424 TCTACAAAGC
21448434 ACTTTGCAAGGAACTTGGAT
1 ACTTTGCAAGGAACTTGGAT
21448454 ACTTTGCAAGGAACTTGGAT
1 ACTTTGCAAGGAACTTGGAT
21448474 TGAGATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (20 bp):
ACTTTGCAAGGAACTTGGAT
Found at i:21450368 original size:31 final size:31
Alignment explanation
Indices: 21450301--21450369 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
21450291 AACCATGTGA
* *
21450301 CTAAAATGAGAATAGTTTTTAACAATAGTGC
1 CTAAAATGAAAATAATTTTTAACAATAGTGC
* * ** *
21450332 TTAAAATGAAAATAATTTTTGACTGTGGTGC
1 CTAAAATGAAAATAATTTTTAACAATAGTGC
21450363 CTAAAAT
1 CTAAAAT
21450370 AGAATTTTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.35
Consensus pattern (31 bp):
CTAAAATGAAAATAATTTTTAACAATAGTGC
Found at i:21455551 original size:17 final size:17
Alignment explanation
Indices: 21455529--21455561 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
21455519 AAAACACATC
21455529 AATATGT-TATTATATAT
1 AATATGTGT-TTATATAT
21455546 AATATGTGTTTATATA
1 AATATGTGTTTATATA
21455562 AAACTAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.93
18 1 0.07
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (17 bp):
AATATGTGTTTATATAT
Found at i:21463083 original size:21 final size:21
Alignment explanation
Indices: 21463059--21463098 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
21463049 TCAATCCTCA
* *
21463059 ATTTCCAATTTTCTATTTTCT
1 ATTTCCAATCTTCAATTTTCT
*
21463080 ATTTTCAATCTTCAATTTT
1 ATTTCCAATCTTCAATTTT
21463099 TAATCCTCAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTCCAATCTTCAATTTTCT
Found at i:21467666 original size:31 final size:32
Alignment explanation
Indices: 21467629--21467693 Score: 80
Period size: 31 Copynumber: 2.0 Consensus size: 32
21467619 TATTTTAGTC
* *
21467629 ATTTATTCTGCTTTAT-TATTTAATTT-ATTTA
1 ATTTATTATGATTTATCT-TTTAATTTCATTTA
21467660 ATTTATTATGATTTATGCTTTTAATTTCATTTA
1 ATTTATTATGATTTAT-CTTTTAATTTCATTTA
21467693 A
1 A
21467694 ATTCCAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 14 0.48
32 8 0.28
33 7 0.24
ACGTcount: A:0.28, C:0.06, G:0.05, T:0.62
Consensus pattern (32 bp):
ATTTATTATGATTTATCTTTTAATTTCATTTA
Found at i:21467850 original size:3 final size:3
Alignment explanation
Indices: 21467842--21467889 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
21467832 TTTTGCCCTC
*
21467842 ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
21467890 TCATTATTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:21480933 original size:44 final size:45
Alignment explanation
Indices: 21480884--21481449 Score: 272
Period size: 44 Copynumber: 12.5 Consensus size: 45
21480874 CTTATCTCTT
**
21480884 TGAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCCTATATCCC
1 TGAAGTTGCAGTGGAGTTAGATTGAAGCTACAAATCCTATATCCC
* * * *
21480928 TGAAGTTGCAGTGGA-TTAGATTAAAGATACAATTCTTATA-CCTC
1 TGAAGTTGCAGTGGAGTTAGATTGAAGCTACAAATCCTATATCC-C
** * *
21480972 TGAAGTTGGGGTGG-GTTAGAATGAAGCTACAACAACAAATCT-TATCTCTC
1 TGAAGTTGCAGTGGAGTTAGATTGAAGCTACAA-ATC----CTATATC-C-C
* * *
21481022 TGAAGTTGTAGTGGAG-TAGACTGAAGCTACAAAT-CTCATCTCCC
1 TGAAGTTGCAGTGGAGTTAGATTGAAGCTACAAATCCT-ATATCCC
* * * * * * *
21481066 TGAAGTTACAATGGAG-TAGATTGAAACAACAAATCTTATCTCCT
1 TGAAGTTGCAGTGGAGTTAGATTGAAGCTACAAATCCTATATCCC
* * ** * *
21481110 TGAAGTTGTAGTGGAGTAAGA-CAAAGCTACAATTCCTATACCCC
1 TGAAGTTGCAGTGGAGTTAGATTGAAGCTACAAATCCTATATCCC
** * ** * **
21481154 TGAAGTTATAGTGG-GTTTGATTGAATTTATTATAGTAAAACT-TATCTCC
1 TGAAGTTGCAGTGGAGTTAGATTGAA---GCTACA--AATCCTATATC-CC
* ** *
21481203 TTCAAGTTGCAGTGGAGCGAGA-TGAAGTTACAAATCCTATATCCC
1 -TGAAGTTGCAGTGGAGTTAGATTGAAGCTACAAATCCTATATCCC
* * * *
21481248 TGAAGTTGCAGTGGA-TCAGATTAAAGCTACAATTCCTATACCCC
1 TGAAGTTGCAGTGGAGTTAGATTGAAGCTACAAATCCTATATCCC
* * * * *
21481292 TGAAGTTG-TGATGCA-TTAGAATGAATCTACAACAACAAATCT-TATCTCC
1 TGAAGTTGCAG-TGGAGTTAGATTGAAGCTACAA-ATC----CTATATC-CC
* * * *
21481341 TTGAAGTTGTAGTGAAG-TAGATTGAATCTACAAAT-CTCATCTCCC
1 -TGAAGTTGCAGTGGAGTTAGATTGAAGCTACAAATCCT-ATATCCC
* * * *
21481386 TAAAGTTGCAGTGGAG-TAGATTGAAACTACAATTCCTATACCCC
1 TGAAGTTGCAGTGGAGTTAGATTGAAGCTACAAATCCTATATCCC
21481430 TGAAGTTGCAGTGG-GTTAGA
1 TGAAGTTGCAGTGGAGTTAGA
21481450 ATAAGGCTAC
Statistics
Matches: 391, Mismatches: 91, Indels: 80
0.70 0.16 0.14
Matches are distributed among these distances:
43 14 0.04
44 246 0.63
45 17 0.04
46 10 0.03
47 7 0.02
48 8 0.02
49 13 0.03
50 71 0.18
51 5 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (45 bp):
TGAAGTTGCAGTGGAGTTAGATTGAAGCTACAAATCCTATATCCC
Found at i:21481047 original size:50 final size:50
Alignment explanation
Indices: 21480956--21481053 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
21480946 GATTAAAGAT
* *
21480956 ACAATTCTTATACCTCTGAAGTTGGGGTGGGTTAGAATGAAGCTACAACA
1 ACAAATCTTATACCTCTGAAGTTGGAGTGGGTTAGAATGAAGCTACAACA
* *
21481006 ACAAATCTTAT-CTCTCTGAAGTTGTAGTGGAG-TAGACTGAAGCTACAA
1 ACAAATCTTATAC-CTCTGAAGTTGGAGTGG-GTTAGAATGAAGCTACAA
21481054 ATCTCATCTC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
49 1 0.02
50 40 0.95
51 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (50 bp):
ACAAATCTTATACCTCTGAAGTTGGAGTGGGTTAGAATGAAGCTACAACA
Found at i:21481066 original size:138 final size:138
Alignment explanation
Indices: 21480869--21481117 Score: 344
Period size: 138 Copynumber: 1.8 Consensus size: 138
21480859 TTTATTATAG
*
21480869 CAAATCTTATCTCTTTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCTGAAGT
1 CAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCTGAAGT
* * * * *
21480934 TGCAGTGGATTAGATT-AAAGATACAATTCTTAT-ACCTCTGAAGTTGGGGTGGGTTAGAATGAA
66 TACAATGGAGTAGATTGAAACA-ACAAATCTTATCACCT-TGAAGTTGGGGTGGGTTAGAATGAA
21480997 GCTACAACAA
129 GCTACAACAA
* * *
21481007 CAAATCTTATCTCTCTGAAGTTGTAGTGGAG-TAGACTGAAGCTACAAAT-CTCATCTCCCTGAA
1 CAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCCT-ATATCCCTGAA
*
21481070 GTTACAATGGAGTAGATTGAAACAACAAATCTTATCTCCTTGAAGTTG
64 GTTACAATGGAGTAGATTGAAACAACAAATCTTATCACCTTGAAGTTG
21481118 TAGTGGAGTA
Statistics
Matches: 97, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
137 5 0.05
138 85 0.88
139 7 0.07
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (138 bp):
CAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCTGAAGT
TACAATGGAGTAGATTGAAACAACAAATCTTATCACCTTGAAGTTGGGGTGGGTTAGAATGAAGC
TACAACAA
Done.