Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 95 of 444
Found at i:22987667 original size:9 final size:9
Alignment explanation
Indices: 22987653--22987683 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
22987643 ATCGAAGAAA
22987653 CATCGTCCT
1 CATCGTCCT
22987662 CATCGTCCT
1 CATCGTCCT
*
22987671 CATCGTCAT
1 CATCGTCCT
22987680 CATC
1 CATC
22987684 ATTCTTGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.16, C:0.42, G:0.10, T:0.32
Consensus pattern (9 bp):
CATCGTCCT
Found at i:22991020 original size:25 final size:25
Alignment explanation
Indices: 22990990--22991038 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
22990980 GAAGCTAGAG
*
22990990 ACGAGAGAAATGAGAGAGAGCTTCA
1 ACGAGAGAAATGAAAGAGAGCTTCA
*
22991015 ACGAGAGAAATGAAAGCGAGCTTC
1 ACGAGAGAAATGAAAGAGAGCTTC
22991039 GATTTTGGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.43, C:0.14, G:0.31, T:0.12
Consensus pattern (25 bp):
ACGAGAGAAATGAAAGAGAGCTTCA
Found at i:22994960 original size:28 final size:27
Alignment explanation
Indices: 22994897--22994966 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
22994887 ATAGTGAGTC
22994897 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
22994924 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
22994952 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22994967 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:22999152 original size:24 final size:24
Alignment explanation
Indices: 22999120--22999174 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
22999110 ACACCTTCAT
*
22999120 ATACATATACACATGAACACATAC
1 ATACATATACACATAAACACATAC
* * *
22999144 ATACTTATACATATAAACACATAT
1 ATACATATACACATAAACACATAC
22999168 ATACATA
1 ATACATA
22999175 CCTTTCACAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.51, C:0.20, G:0.02, T:0.27
Consensus pattern (24 bp):
ATACATATACACATAAACACATAC
Found at i:23000661 original size:25 final size:25
Alignment explanation
Indices: 23000631--23000682 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
23000621 TATGGACACA
23000631 TTTGGCTTTTAATTTTGTCTTCTAG
1 TTTGGCTTTTAATTTTGTCTTCTAG
23000656 TTTGGCTTTTAATTTTGTCTTCTAG
1 TTTGGCTTTTAATTTTGTCTTCTAG
23000681 TT
1 TT
23000683 CATTTTACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.12, C:0.12, G:0.15, T:0.62
Consensus pattern (25 bp):
TTTGGCTTTTAATTTTGTCTTCTAG
Found at i:23004417 original size:34 final size:31
Alignment explanation
Indices: 23004361--23004436 Score: 84
Period size: 34 Copynumber: 2.4 Consensus size: 31
23004351 AATTATTTAG
* *
23004361 ATTAGGG-TTTATGGTTTCTAAATAAAATAAGTAA
1 ATTAGGGTTTTATGGATTATAAAT-AAAT---TAA
23004395 ATTAGGGTTTTA-GGATTATAAATAAATTAA
1 ATTAGGGTTTTATGGATTATAAATAAATTAA
23004425 ATTAGGGTTTTA
1 ATTAGGGTTTTA
23004437 AATAAATTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
30 15 0.38
33 4 0.10
34 16 0.41
35 4 0.10
ACGTcount: A:0.39, C:0.01, G:0.18, T:0.41
Consensus pattern (31 bp):
ATTAGGGTTTTATGGATTATAAATAAATTAA
Found at i:23004471 original size:30 final size:28
Alignment explanation
Indices: 23004392--23004649 Score: 121
Period size: 22 Copynumber: 9.1 Consensus size: 28
23004382 ATAAAATAAG
* *
23004392 TAAATTAGGGTTTTAGGATTATAAATAAAT
1 TAAATTA-GG-TTTACGATTTTAAATAAAT
23004422 TAAATTAGG-----G-TTTTAAATAAAT
1 TAAATTAGGTTTACGATTTTAAATAAAT
23004444 TAAATTAGTGTTTACGATTTGTAAATAAATT
1 TAAATTAG-GTTTACGATTT-TAAATAAA-T
* * *
23004475 AAGTAAATTAGGGTTAGGGTTTTAAATAAAT
1 ---TAAATTAGGTTTACGATTTTAAATAAAT
*
23004506 TAAATTAGGGTTTATGATTTTTAAATAAATTAAT
1 TAAATTA-GGTTTACGA-TTTTAAAT--A--AAT
* *
23004540 TAAATTAGGGTTCTAGGGTTTTAAATAAAT
1 TAAATTA-GGTT-TACGATTTTAAATAAAT
* *
23004570 TAAGTTAGG-----G-TTTTAAATAAAA
1 TAAATTAGGTTTACGATTTTAAATAAAT
* *
23004592 TAAATTAGGGTTTATGGTTTTAAATAAAT
1 TAAATTA-GGTTTACGATTTTAAATAAAT
** * *
23004621 T-AA-GGGGTTTATGGTTTTAAATAAAT
1 TAAATTAGGTTTACGATTTTAAATAAAT
23004647 TAA
1 TAA
23004650 GTAAATTAGT
Statistics
Matches: 186, Mismatches: 15, Indels: 57
0.72 0.06 0.22
Matches are distributed among these distances:
22 36 0.19
23 5 0.03
26 22 0.12
27 1 0.01
28 11 0.06
29 25 0.13
30 32 0.17
31 2 0.01
32 10 0.05
33 8 0.04
34 31 0.17
35 3 0.02
ACGTcount: A:0.41, C:0.01, G:0.17, T:0.41
Consensus pattern (28 bp):
TAAATTAGGTTTACGATTTTAAATAAAT
Found at i:23004482 original size:34 final size:33
Alignment explanation
Indices: 23004435--23004574 Score: 146
Period size: 34 Copynumber: 4.3 Consensus size: 33
23004425 ATTAGGGTTT
* * * *
23004435 TAAATAAATTAAATTAGTGTTTACGATTTGTAAA
1 TAAATTAAGTAAATTAGGGTTTAGGATTT-TAAA
*
23004469 TAAATTAAGTAAATTAGGG-TTAGGGTTTTAAA
1 TAAATTAAGTAAATTAGGGTTTAGGATTTTAAA
*
23004501 TAAA-T---TAAATTAGGGTTTATGATTTTTAAA
1 TAAATTAAGTAAATTAGGGTTTAGGA-TTTTAAA
* *
23004531 TAAATTAATTAAATTAGGGTTCTAGGGTTTTAAA
1 TAAATTAAGTAAATTAGGGTT-TAGGATTTTAAA
23004565 TAAATTAAGT
1 TAAATTAAGT
23004575 TAGGGTTTTA
Statistics
Matches: 89, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
28 10 0.11
29 4 0.04
30 11 0.12
31 2 0.02
32 8 0.09
33 7 0.08
34 44 0.49
35 3 0.03
ACGTcount: A:0.41, C:0.01, G:0.16, T:0.41
Consensus pattern (33 bp):
TAAATTAAGTAAATTAGGGTTTAGGATTTTAAA
Found at i:23004497 original size:62 final size:62
Alignment explanation
Indices: 23004426--23004694 Score: 298
Period size: 62 Copynumber: 4.5 Consensus size: 62
23004416 ATAAATTAAA
* *
23004426 TTAGGGTTTTAAATAAATTAAATTAGTGTTTACGATTTGTAAATAAATTAAGTAAATTAGGG-
1 TTAGGGTTTTAAATAAATTAAATTAGGGTTTATGATTT-TAAATAAATTAAGTAAATTAGGGT
*
23004488 TTAGGGTTTTAAATAAATTAAATTAGGGTTTATGATTTTTAAATAAATTAATTAAATTAGGGT
1 TTAGGGTTTTAAATAAATTAAATTAGGGTTTATGA-TTTTAAATAAATTAAGTAAATTAGGGT
*
23004551 TCTAGGGTTTTAAATAAATTAAGTTA-GG-----G-TTTTAAAT-AA--AA-TAAATTAGGGT
1 T-TAGGGTTTTAAATAAATTAAATTAGGGTTTATGATTTTAAATAAATTAAGTAAATTAGGGT
* * * *
23004603 TTATGGTTTTAAATAAATT-AA--GGGGTTTATGGTTTTAAATAAATTAAGTAAATTAGTGT
1 TTAGGGTTTTAAATAAATTAAATTAGGGTTTATGATTTTAAATAAATTAAGTAAATTAGGGT
* **
23004662 TCTTGGGTTTTAAATAAAGAAAATTAGGGTTTA
1 T-TAGGGTTTTAAATAAATTAAATTAGGGTTTA
23004695 GGGTTAAAAT
Statistics
Matches: 176, Mismatches: 13, Indels: 35
0.79 0.06 0.16
Matches are distributed among these distances:
49 2 0.01
50 1 0.01
51 17 0.10
52 12 0.07
53 2 0.01
54 1 0.01
55 10 0.06
56 10 0.06
58 3 0.02
59 11 0.06
60 14 0.08
61 2 0.01
62 55 0.31
63 13 0.07
64 23 0.13
ACGTcount: A:0.39, C:0.01, G:0.18, T:0.42
Consensus pattern (62 bp):
TTAGGGTTTTAAATAAATTAAATTAGGGTTTATGATTTTAAATAAATTAAGTAAATTAGGGT
Found at i:23004635 original size:26 final size:26
Alignment explanation
Indices: 23004589--23004650 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
23004579 GTTTTAAATA
23004589 AAATAAATT-A-GGGTTTATGGTTTT
1 AAATAAATTAAGGGGTTTATGGTTTT
23004613 AAATAAATTAAGGGGTTTATGGTTTT
1 AAATAAATTAAGGGGTTTATGGTTTT
23004639 AAATAAATTAAG
1 AAATAAATTAAG
23004651 TAAATTAGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
24 9 0.25
25 1 0.03
26 26 0.72
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (26 bp):
AAATAAATTAAGGGGTTTATGGTTTT
Found at i:23004655 original size:86 final size:87
Alignment explanation
Indices: 23004465--23004699 Score: 244
Period size: 86 Copynumber: 2.7 Consensus size: 87
23004455 TTACGATTTG
* * *
23004465 TAAATAAATTAAGTAAATTAGGGTTAGGGTTTTAAATAAATTAAATTAGGGTTTATGATTTTTAA
1 TAAATAAATTAAGTAAATTAGAGTTAGGGTTTTAAATAAAATAAATTAGGGTTTATG-GTTTTAA
**
23004530 ATAAATTAATTAAATTAGGGTTC
65 ATAAATTAAGGAAATTAGGGTTC
** * *
23004553 TAGGGT--TTTAAATAAATTA-AGTTAGGGTTTTAAATAAAATAAATTAGGGTTTATGGTTTTAA
1 TA-AATAAATTAAGTAAATTAGAGTTAGGGTTTTAAATAAAATAAATTAGGGTTTATGGTTTTAA
*** * *
23004615 ATAAATTAAGGGGTTTATGGTTT
65 ATAAATTAAGGAAATTAGGGTTC
* * *
23004638 TAAATAAATTAAGTAAATTAGTGTTCTTGGGTTTTAAATAAAGA-AAATTAGGGTTTAGGGTT
1 TAAATAAATTAAGTAAATTAGAG-T-TAGGGTTTTAAATAAA-ATAAATTAGGGTTTATGGTT
23004700 AAAATTAATT
Statistics
Matches: 119, Mismatches: 21, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
84 1 0.01
85 24 0.20
86 45 0.38
87 12 0.10
88 3 0.03
89 33 0.28
90 1 0.01
ACGTcount: A:0.39, C:0.01, G:0.19, T:0.41
Consensus pattern (87 bp):
TAAATAAATTAAGTAAATTAGAGTTAGGGTTTTAAATAAAATAAATTAGGGTTTATGGTTTTAAA
TAAATTAAGGAAATTAGGGTTC
Found at i:23004655 original size:111 final size:113
Alignment explanation
Indices: 23004469--23004693 Score: 312
Period size: 111 Copynumber: 2.0 Consensus size: 113
23004459 GATTTGTAAA
* * *
23004469 TAAATTAAGTAAATTAGGGTTAGGGTTTTAAATAAATTAAATTAGGGTTTATGATTTTTAAATAA
1 TAAATAAAATAAATTAGGGTTAGGGTTTTAAATAAATTAAA-TAGGGTTTATGAGTTTTAAATAA
* ** *
23004534 ATTAATTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAGTTAGGGTTT
65 ATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAAGAAAATTAGGGTTT
* *
23004583 TAAATAAAATAAATTAGGGTTTATGGTTTTAAATAAATT-AA-GGGGTTTATG-GTTTTAAATAA
1 TAAATAAAATAAATTAGGG-TTAGGGTTTTAAATAAATTAAATAGGGTTTATGAGTTTTAAATAA
* *
23004645 ATTAAGTAAATTAGTGTTCTTGGGTTTTAAATAAAGAAAATTAGGGTTT
65 ATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAAGAAAATTAGGGTTT
23004694 AGGGTTAAAA
Statistics
Matches: 99, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
111 53 0.54
112 9 0.09
114 19 0.19
115 18 0.18
ACGTcount: A:0.39, C:0.01, G:0.19, T:0.41
Consensus pattern (113 bp):
TAAATAAAATAAATTAGGGTTAGGGTTTTAAATAAATTAAATAGGGTTTATGAGTTTTAAATAAA
TTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAAGAAAATTAGGGTTT
Found at i:23008807 original size:23 final size:23
Alignment explanation
Indices: 23008780--23008823 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
23008770 TTTTAATAAG
23008780 GTTTTATT-TTATTTTCTAGACAA
1 GTTTTATTCTTATTTTC-AGACAA
*
23008803 GTTTTATTCTTGTTTTCAGAC
1 GTTTTATTCTTATTTTCAGAC
23008824 TTGGATTCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57
Consensus pattern (23 bp):
GTTTTATTCTTATTTTCAGACAA
Found at i:23009442 original size:41 final size:41
Alignment explanation
Indices: 23009384--23009489 Score: 149
Period size: 41 Copynumber: 2.6 Consensus size: 41
23009374 CTAGATTTCG
* *
23009384 TGTATTATACCAAGCGTTGTGCCTAGCAGGCTTCATGCCTA
1 TGTATTATATCAAGCGTTGTGCCTAGCAGGCTTCATGCCGA
* * * *
23009425 TGTATTATATTAGGCGTTGTGCCTAGCAGGCTTCGTGCCGG
1 TGTATTATATCAAGCGTTGTGCCTAGCAGGCTTCATGCCGA
*
23009466 TGTATTATATCAAGCTTTGTGCCT
1 TGTATTATATCAAGCGTTGTGCCT
23009490 GGTAGGCAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.36
Consensus pattern (41 bp):
TGTATTATATCAAGCGTTGTGCCTAGCAGGCTTCATGCCGA
Found at i:23011624 original size:21 final size:21
Alignment explanation
Indices: 23011595--23011635 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
23011585 CTAAATAGAC
*
23011595 GTCTGTTTGTCAGAACATTTT
1 GTCTATTTGTCAGAACATTTT
**
23011616 GTCTATTTGTGTGAACATTT
1 GTCTATTTGTCAGAACATTT
23011636 GGTTACTGAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.12, G:0.20, T:0.49
Consensus pattern (21 bp):
GTCTATTTGTCAGAACATTTT
Found at i:23015391 original size:48 final size:48
Alignment explanation
Indices: 23015329--23015657 Score: 264
Period size: 48 Copynumber: 6.9 Consensus size: 48
23015319 CGGTCACATT
* *
23015329 ATGAGAGCTAGTGTAAGACCATGTCTGAGACATGTCATCGGCATTGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* * * * * *
23015377 ACGAGAGCTAGTGTAAGACTATGTCTAGGACATGGCATTGGCCTCGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* * *
23015425 ATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC-TATGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAG
* * * * ** *
23015473 ATGTG-TC-AATGTAAGACCATGTCTGGGATATGGCATCGGCACAGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* ** *
23015519 ATGTGAGAGCTAGTGTAAGACCATGCCTGGGACATGGTGTCGGCCTCGATTGCG
1 A--TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG---C-ATTGAG
* *
23015573 AT-AG-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TT--G
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* *
23015615 ATGTATGAGCCAGTGTAAGACCATTTCTAGGG-CATGGCATCGG
1 ATG-A-GAGCTAGTGTAAGACCATGTCT-GGGACATGGCATCGG
23015658 TATCCTACCC
Statistics
Matches: 223, Mismatches: 42, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
42 3 0.01
44 3 0.01
45 1 0.00
46 35 0.16
47 28 0.13
48 89 0.40
49 29 0.13
50 28 0.13
51 2 0.01
52 1 0.00
53 1 0.00
54 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (48 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
Found at i:23031127 original size:2 final size:2
Alignment explanation
Indices: 23031120--23031166 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
23031110 AACTTCATAC
23031120 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23031162 AT AT A
1 AT AT A
23031167 ATGTTAGAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:23031793 original size:15 final size:15
Alignment explanation
Indices: 23031769--23031807 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
23031759 CATTATAATT
23031769 AAAATGAAAAAAAATA
1 AAAAT-AAAAAAAATA
*
23031785 AAAATAAAAAATATA
1 AAAATAAAAAAAATA
*
23031800 AAATTAAA
1 AAAATAAA
23031808 TCTTAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (15 bp):
AAAATAAAAAAAATA
Found at i:23031816 original size:93 final size:95
Alignment explanation
Indices: 23031699--23031876 Score: 238
Period size: 93 Copynumber: 1.9 Consensus size: 95
23031689 GTGGTCATAG
* *
23031699 AAATATAAAGATTAAATTTTAAATTCGAGTTTAAAAAAG-GGATCAAAAC-TAAAATTTTACCAT
1 AAATATAAAGATTAAATCTTAAATTCGAGTTTAAAAAAGAGG-CCAAAACAT-AAATTTTACCAT
23031762 TATAATT-AAAATGAAAAAAAATAAAAATAAA
64 TATAATTGAAAATGAAAAAAAATAAAAATAAA
* * * *
23031793 AAATATAAA-ATTAAATCTTAAATTTGAGTTTAATAGAGAGGCCAAAACATAAATTTTACCGTTA
1 AAATATAAAGATTAAATCTTAAATTCGAGTTTAAAAAAGAGGCCAAAACATAAATTTTACCATTA
* *
23031857 TATTTGAAATTGAAAAAAAA
66 TAATTGAAAATGAAAAAAAA
23031877 AACCGACGAG
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
93 48 0.66
94 25 0.34
ACGTcount: A:0.54, C:0.06, G:0.09, T:0.30
Consensus pattern (95 bp):
AAATATAAAGATTAAATCTTAAATTCGAGTTTAAAAAAGAGGCCAAAACATAAATTTTACCATTA
TAATTGAAAATGAAAAAAAATAAAAATAAA
Found at i:23037341 original size:26 final size:26
Alignment explanation
Indices: 23037312--23037393 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
23037302 TGATACAAAT
*
23037312 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23037338 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23037364 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23037390 TGAT
1 TGAT
23037394 TGGAATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:23038911 original size:26 final size:26
Alignment explanation
Indices: 23038882--23038934 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23038872 TTTACAGTTT
23038882 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
23038908 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
23038934 T
1 T
23038935 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:23044142 original size:6 final size:6
Alignment explanation
Indices: 23044131--23044157 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
23044121 AATTTATTCA
23044131 AAAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAA
23044158 CTAAGAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:23044834 original size:31 final size:30
Alignment explanation
Indices: 23044769--23044834 Score: 78
Period size: 31 Copynumber: 2.2 Consensus size: 30
23044759 AACTGATATT
* ** *
23044769 TAAATAATTTAATTAATGTTACATAATGTT
1 TAAATAATTTAATTAATGGTACATAAAATG
*
23044799 TAAATAATTTAATATAATGGTATATAAAATG
1 TAAATAATTTAAT-TAATGGTACATAAAATG
23044830 TAAAT
1 TAAAT
23044835 TAATCTAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 13 0.43
31 17 0.57
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (30 bp):
TAAATAATTTAATTAATGGTACATAAAATG
Found at i:23047211 original size:93 final size:94
Alignment explanation
Indices: 23047091--23047362 Score: 269
Period size: 93 Copynumber: 2.9 Consensus size: 94
23047081 CATTTCACAT
* * * * *** **
23047091 GCCAGTGTAAAACCATGTTTGGAACATGGCATCGACTATGTTATAAGAGCTGGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACCATATAAGAGCCAGTGTAAGACCATG
* * * *
23047156 TTGGACATGGCATCGGCGTTG-GCTGTGA
66 TTGGACATAGCATCGGCATTGAGATGAGA
* * *
23047184 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCACCATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACCATATAAGAGCCAGTGTAAGACCATG
*
23047249 TTGGACATAGCCTCGGCATTGAGATGAGA
66 TTGGACATAGCATCGGCATTGAGATGAGA
* * * * * **
23047278 GCTAGTGTAAGACCATGTCTAGGACATGGCATC-AGCCTCGACATGTGAGCCAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCACCATATAAGAGCCAGTGTAAGACCAT
* *
23047342 GTGTGGGATATGGCATCGGCA
65 GT-T-GGACATAGCATCGGCA
23047363 ATTCACCCTT
Statistics
Matches: 147, Mismatches: 28, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
93 71 0.48
94 62 0.42
95 1 0.01
96 13 0.09
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (94 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACCATATAAGAGCCAGTGTAAGACCATG
TTGGACATAGCATCGGCATTGAGATGAGA
Found at i:23047243 original size:48 final size:47
Alignment explanation
Indices: 23047041--23047361 Score: 249
Period size: 48 Copynumber: 6.8 Consensus size: 47
23047031 GGTGACATGT
* * * * *
23047041 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCCGCCA-CATTTCA
1 GAGCCAGTGTAAGACCATG-TTGGGACATGGCATCGGCCATGATATGA
* * * * * * *
23047088 CATGCCAGTGTAAAACCATGTTTGGAACATGGCATCGACTATGTTATAA
1 GA-GCCAGTGTAAGACCATG-TTGGGACATGGCATCGGCCATGATATGA
** ** ** *
23047137 GAGCTGGTGTAAGACCATGTT-GGACATGGCATCGGCGTTG-GCTGT
1 GAGCCAGTGTAAGACCATGTTGGGACATGGCATCGGCCATGATATGA
* **
23047182 GAGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCACCATATGA
1 GAGCCAGTGTAAGACCATGT-TGGGACATGGCATCGGCCATGATATGA
* * *
23047230 GAGCCAGTGTAAGACCATGTT-GGACATAGCCTCGG-CATTGAGATGA
1 GAGCCAGTGTAAGACCATGTTGGGACATGGCATCGGCCA-TGATATGA
* * * * *
23047276 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCC-TCGACATGT
1 GAGCCAGTGTAAGACCATGT-TGGGACATGGCATCGGCCAT-GATATGA
*
23047324 GAGCCAGTGTAAGACCATGTGTGGGATATGGCATCGGC
1 GAGCCAGTGTAAGACCATGT-TGGGACATGGCATCGGC
23047362 AATTCACCCT
Statistics
Matches: 215, Mismatches: 49, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
45 21 0.10
46 52 0.24
47 20 0.09
48 117 0.54
49 5 0.02
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTTGGGACATGGCATCGGCCATGATATGA
Found at i:23047303 original size:141 final size:142
Alignment explanation
Indices: 23047034--23047361 Score: 396
Period size: 141 Copynumber: 2.3 Consensus size: 142
23047024 CATTTGGGGT
* * * *
23047034 GACATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCCGCCACATTTCACATGCCAGTGT
1 GACATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATATCACATGCCAGTGT
* ** *
23047099 AAAACCATGTTTGGAACATGGCATCGACTATGTTATAAGAGCTGGTGTAAGACCATGTTGGACAT
66 AAAACCATGTTTGGAACATAGCATCGACTATGAGATAAGAGCTAGTGTAAGACCATGTTGGACAT
* * *
23047164 GGCATCGGCGTT
131 GGCATCAGCCTC
* * * *
23047176 GGC-TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCACCATATGAGA-GCCAGTG
1 GACATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CATATCACATGCCAGTG
* * * *
23047239 TAAGACCATG-TTGG-ACATAGCCTCGGC-ATTGAGATGAGAGCTAGTGTAAGACCATGTCTAGG
65 TAAAACCATGTTTGGAACATAGCATCGACTA-TGAGATAAGAGCTAGTGTAAGACCATGT-T-GG
23047301 ACATGGCATCAGCCTC
127 ACATGGCATCAGCCTC
* *
23047317 GACATGTGAGCCAGTGTAAGACCATGTGTGGGATATGGCATCGGC
1 GACATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
23047362 AATTCACCCT
Statistics
Matches: 158, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
138 1 0.01
139 34 0.22
140 5 0.03
141 72 0.46
142 46 0.29
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.24
Consensus pattern (142 bp):
GACATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATATCACATGCCAGTGT
AAAACCATGTTTGGAACATAGCATCGACTATGAGATAAGAGCTAGTGTAAGACCATGTTGGACAT
GGCATCAGCCTC
Found at i:23047328 original size:94 final size:93
Alignment explanation
Indices: 23047143--23047362 Score: 278
Period size: 94 Copynumber: 2.3 Consensus size: 93
23047133 ATAAGAGCTG
* * * * *
23047143 GTGTAAGACCATGTTGGACATGGCATCGGCGTTGGCTGTGAGCCAGTGTAAGACCATGTCTGGGA
1 GTGTAAGACCATGTTGGACATAGCATCGGCATTGGATGAGAGCCAGTGTAAGACCATGTCTAGGA
* * *
23047208 CATGGCGTCGGCCACCATATGAGAGCCA
66 CATGGCATCAGCCACCACATGAGAGCCA
* *
23047236 GTGTAAGACCATGTTGGACATAGCCTCGGCATTGAGATGAGAGCTAGTGTAAGACCATGTCTAGG
1 GTGTAAGACCATGTTGGACATAGCATCGGCATTG-GATGAGAGCCAGTGTAAGACCATGTCTAGG
* * *
23047301 ACATGGCATCAGCCTCGACATGTGAGCCA
65 ACATGGCATCAGCCACCACATGAGAGCCA
* *
23047330 GTGTAAGACCATGTGTGGGATATGGCATCGGCA
1 GTGTAAGACCATGT-T-GGACATAGCATCGGCA
23047363 ATTCACCCTT
Statistics
Matches: 108, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
93 31 0.29
94 63 0.58
95 1 0.01
96 13 0.12
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.22
Consensus pattern (93 bp):
GTGTAAGACCATGTTGGACATAGCATCGGCATTGGATGAGAGCCAGTGTAAGACCATGTCTAGGA
CATGGCATCAGCCACCACATGAGAGCCA
Found at i:23049520 original size:106 final size:106
Alignment explanation
Indices: 23049335--23049532 Score: 315
Period size: 106 Copynumber: 1.9 Consensus size: 106
23049325 GTGTTACACC
* * * * *
23049335 TGTGCCAAACCGTGTGCGCATTTGATGTTGAGTCACACGGCCATGTCACAGACCATGTGAAACCT
1 TGTGCCAAACAGTGTGCGCACTCGATGTTGAGTCACACAGCCATGTCACAAACCATGTGAAACCT
23049400 ACACCAAAAACAATAATGACACACGACCGTGATGCAAAACA
66 ACACCAAAAACAATAATGACACACGACCGTGATGCAAAACA
* * **
23049441 TGTGCCAAATAGTGTGTGCACTCGATGTTGAGTCACACAGCCATGTTGCAAACCATGTGAAACCT
1 TGTGCCAAACAGTGTGCGCACTCGATGTTGAGTCACACAGCCATGTCACAAACCATGTGAAACCT
23049506 ACACCAAAAACAATAATGACACACGAC
66 ACACCAAAAACAATAATGACACACGAC
23049533 TGTGTGGGGT
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
106 83 1.00
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (106 bp):
TGTGCCAAACAGTGTGCGCACTCGATGTTGAGTCACACAGCCATGTCACAAACCATGTGAAACCT
ACACCAAAAACAATAATGACACACGACCGTGATGCAAAACA
Found at i:23057096 original size:27 final size:28
Alignment explanation
Indices: 23057066--23057165 Score: 100
Period size: 27 Copynumber: 3.7 Consensus size: 28
23057056 TTTAGTTTAC
23057066 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* ** *
23057093 TAAAAATATTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
23057120 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
23057147 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
23057166 CGATTTACAA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.11
27 52 0.85
28 2 0.03
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:23057231 original size:27 final size:27
Alignment explanation
Indices: 23057161--23057369 Score: 253
Period size: 27 Copynumber: 7.8 Consensus size: 27
23057151 ATTACCAAAG
* *
23057161 TACCC-CGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
23057187 TACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
23057213 TACCC-CTGATTTGCATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
23057240 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
23057267 TACCCTCGATTTACAGAATTACAGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
23057294 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
23057321 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
23057348 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
23057370 TAAAATACCC
Statistics
Matches: 164, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 30 0.18
27 133 0.81
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:23057378 original size:27 final size:27
Alignment explanation
Indices: 23057267--23057569 Score: 100
Period size: 27 Copynumber: 11.1 Consensus size: 27
23057257 ATTACCGTTT
* ***
23057267 TACCCTCGATTTACAGAATTAC-AGTTT
1 TACCCTCGATTTACAAAATTACTA-AAA
* * ***
23057294 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
23057321 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
23057348 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
23057375 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* **
23057402 TACCC-CTAGTTTGTAAAATTA-TCAAAA
1 TACCCTCGA-TTTACAAAATTACT-AAAA
* * *** **
23057429 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
23057456 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
23057483 TACCC-CTGATTTACAAAGTTA-TAGAAT
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
23057510 TACCCTTGACTTT-CTAAAAATTA-TAAAAA
1 TACCCTCGA-TTTAC--AAAATTACT-AAAA
* * * * *
23057539 TACCATTGGTTAACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
23057566 TACC
1 TACC
23057570 ATTGGTTTGT
Statistics
Matches: 224, Mismatches: 37, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
26 3 0.01
27 196 0.88
28 7 0.03
29 17 0.08
30 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:23057395 original size:81 final size:81
Alignment explanation
Indices: 23057237--23057396 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 81
23057227 ATAATTATCG
* * *** *
23057237 TTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACAGTTTTACCCTCG
1 TTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACAGAAATACCCTAG
*
23057302 ATTTATAGAATTACTA
66 ATTTATAAAATTACTA
* * *
23057318 TTTTACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTA-AAATACCCTT
1 TTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC-AGAAATACCC-T
*
23057382 AG-TTTGTAAAATTAC
64 AGATTTATAAAATTAC
23057397 CAAAATACCC
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
81 63 0.95
82 3 0.05
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (81 bp):
TTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACAGAAATACCCTAG
ATTTATAAAATTACTA
Found at i:23057406 original size:54 final size:54
Alignment explanation
Indices: 23057348--23057487 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 54
23057338 ATTACTATTT
* **
23057348 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
23057402 TACCC-CTAGTTTGTAAAATTA-TCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACT-AAAATACCCTTAGTTTGTAAAATTACCAAAA
*
23057456 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACTAAAATACCC
23057488 CTGATTTACA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
53 2 0.03
54 70 0.96
55 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:23057514 original size:54 final size:54
Alignment explanation
Indices: 23057348--23057515 Score: 130
Period size: 54 Copynumber: 3.1 Consensus size: 54
23057338 ATTACTATTT
* ** * *
23057348 TACCCTCGATTTACAAAATTACTAAAATA-CCCTTAGTTTGTA-AAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGA-TTTG-ACAAATTA-CAGAAA
* * * * ** *
23057402 TACCC-CTAGTTTGTAAAATTATCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCCTGATTTGACAAATTACAGAAA
* *
23057456 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTT-ACAAAGTTATAGAAT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGACAAA-TTACAGAAA
23057510 TACCCT
1 TACCCT
23057516 TGACTTTCTA
Statistics
Matches: 88, Mismatches: 20, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
53 5 0.06
54 79 0.90
55 4 0.05
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGACAAATTACAGAAA
Found at i:23057695 original size:27 final size:27
Alignment explanation
Indices: 23057618--23057695 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
23057608 AAATGACTAA
* *
23057618 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
23057645 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
23057672 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
23057696 GAATATGCCT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:23058882 original size:25 final size:25
Alignment explanation
Indices: 23058853--23058900 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23058843 TTATAATATG
* * *
23058853 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
23058878 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
23058901 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:23058951 original size:9 final size:9
Alignment explanation
Indices: 23058939--23059015 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
23058929 TTTGATAAAC
23058939 ATGATATGT
1 ATGATATGT
*
23058948 ATGATATGCAC
1 ATGATATG--T
23058959 ATGATATGT
1 ATGATATGT
*
23058968 ATGATATGCAC
1 ATGATATG--T
*
23058979 ATGACATGT
1 ATGATATGT
*
23058988 ATGATATGCAC
1 ATGATATG--T
23058999 ATGATATGT
1 ATGATATGT
23059008 ATGATATG
1 ATGATATG
23059016 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:23058964 original size:11 final size:11
Alignment explanation
Indices: 23058948--23059019 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
23058938 CATGATATGT
23058948 ATGATATGCAC
1 ATGATATGCAC
*
23058959 ATGATATG--T
1 ATGATATGCAC
23058968 ATGATATGCAC
1 ATGATATGCAC
* *
23058979 ATGACATG--T
1 ATGATATGCAC
23058988 ATGATATGCAC
1 ATGATATGCAC
*
23058999 ATGATATG--T
1 ATGATATGCAC
23059008 ATGATATGCAC
1 ATGATATGCAC
23059019 A
1 A
23059020 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:23059027 original size:20 final size:20
Alignment explanation
Indices: 23058937--23059019 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
23058927 ATTTTGATAA
23058937 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
23058957 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
23058977 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
23058997 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
23059017 ACA
1 ACA
23059020 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:23059153 original size:23 final size:24
Alignment explanation
Indices: 23059074--23059218 Score: 197
Period size: 24 Copynumber: 6.0 Consensus size: 24
23059064 GAGGAAGTGC
23059074 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
23059098 AAAAGGTCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
23059122 AAAAGGGCTTACGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
23059146 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
23059169 AAAAAAAGGGCTT-TGCCCCAGTTATT
1 ---AAAAGGGCTTATGCCCCAGTTATT
*
23059195 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
23059219 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
23 28 0.26
24 51 0.47
25 8 0.07
26 13 0.12
27 9 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:23059445 original size:31 final size:31
Alignment explanation
Indices: 23059410--23059475 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
23059400 ACCGTTTACC
23059410 GAAAAGGCTTCGGCCCAGTAATATGAAATAT
1 GAAAAGGCTTCGGCCCAGTAATATGAAATAT
**
23059441 GAAAAGGCTTCGGCCCAGTGTTATGAAATAT
1 GAAAAGGCTTCGGCCCAGTAATATGAAATAT
23059472 GAAA
1 GAAA
23059476 TATGAAAAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (31 bp):
GAAAAGGCTTCGGCCCAGTAATATGAAATAT
Found at i:23060799 original size:15 final size:16
Alignment explanation
Indices: 23060779--23060814 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
23060769 ATTAATTGTG
*
23060779 ATTAAGGTTTAATTA-
1 ATTAAGATTTAATTAC
23060794 ATTAAGATTTAATTAC
1 ATTAAGATTTAATTAC
23060810 ATTAA
1 ATTAA
23060815 TTAAGTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.44
Consensus pattern (16 bp):
ATTAAGATTTAATTAC
Found at i:23061801 original size:28 final size:28
Alignment explanation
Indices: 23061761--23061818 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
23061751 GAAGTATGTG
*
23061761 TAGGATTTGTATGGCATGCCATTAGGGT
1 TAGGATATGTATGGCATGCCATTAGGGT
23061789 TAGGATATGTATGGCATGCCATTAGGGT
1 TAGGATATGTATGGCATGCCATTAGGGT
23061817 TA
1 TA
23061819 TATACATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.24, C:0.10, G:0.31, T:0.34
Consensus pattern (28 bp):
TAGGATATGTATGGCATGCCATTAGGGT
Found at i:23069004 original size:6 final size:6
Alignment explanation
Indices: 23068993--23069017 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
23068983 CTAGAACACT
23068993 ATTTTA ATTTTA ATTTTA ATTTTA A
1 ATTTTA ATTTTA ATTTTA ATTTTA A
23069018 AGGAAAATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
ATTTTA
Found at i:23069504 original size:29 final size:30
Alignment explanation
Indices: 23069446--23069505 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
23069436 ACTTTGATTT
23069446 TAATATTGAATTTTAAGCTAAGCCAAAAAA
1 TAATATTGAATTTTAAGCTAAGCCAAAAAA
23069476 TAATA-TGAAATTTTAAGCTAAGCCAAAAAA
1 TAATATTG-AATTTTAAGCTAAGCCAAAAAA
23069506 CGAAATATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.28
Consensus pattern (30 bp):
TAATATTGAATTTTAAGCTAAGCCAAAAAA
Found at i:23069975 original size:10 final size:10
Alignment explanation
Indices: 23069960--23069999 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
23069950 TATATTTATT
23069960 TAAAAAATTA
1 TAAAAAATTA
23069970 TAAAAAATT-
1 TAAAAAATTA
23069979 T-AAAAA-TA
1 TAAAAAATTA
23069987 TAAAAAAATTA
1 T-AAAAAATTA
23069998 TA
1 TA
23070000 TATTTTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
7 1 0.04
8 6 0.23
9 1 0.04
10 15 0.58
11 3 0.12
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:23069994 original size:19 final size:19
Alignment explanation
Indices: 23069957--23069994 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
23069947 TATTATATTT
*
23069957 ATTTAAAAAATTATAAAAA
1 ATTTAAAAAATTAAAAAAA
23069976 ATTT-AAAAATATAAAAAAA
1 ATTTAAAAAAT-TAAAAAAA
23069995 TTATATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
ATTTAAAAAATTAAAAAAA
Found at i:23069996 original size:18 final size:19
Alignment explanation
Indices: 23069957--23069993 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
23069947 TATTATATTT
23069957 ATTTAAAAAATTATAAAAA
1 ATTTAAAAAATTATAAAAA
23069976 ATTT-AAAAA-TATAAAAA
1 ATTTAAAAAATTATAAAAA
23069993 A
1 A
23069994 ATTATATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 5 0.28
19 4 0.22
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
ATTTAAAAAATTATAAAAA
Found at i:23070949 original size:21 final size:21
Alignment explanation
Indices: 23070925--23070966 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
23070915 AGAACTCAAA
* *
23070925 ATTTCAAATATTATAAGTTAT
1 ATTTCAAATACTATAAATTAT
23070946 ATTTCAAATACTATAAATTAT
1 ATTTCAAATACTATAAATTAT
23070967 GTAATAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.45
Consensus pattern (21 bp):
ATTTCAAATACTATAAATTAT
Found at i:23072167 original size:27 final size:28
Alignment explanation
Indices: 23072119--23072186 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 28
23072109 TGTTTTTTAG
*
23072119 ATTTTACAATTGTCCCTCTATTTTTCAA
1 ATTTTACAATTTTCCCTCTATTTTTCAA
* *
23072147 ATTTTACAATTTTCCCT-TATTTTTTAG
1 ATTTTACAATTTTCCCTCTATTTTTCAA
23072174 ATTTTACAATTTT
1 ATTTTACAATTTT
23072187 ACCTAGAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.25, C:0.16, G:0.03, T:0.56
Consensus pattern (28 bp):
ATTTTACAATTTTCCCTCTATTTTTCAA
Found at i:23072198 original size:27 final size:26
Alignment explanation
Indices: 23072112--23072205 Score: 89
Period size: 27 Copynumber: 3.4 Consensus size: 26
23072102 TGACCCCTGT
* *
23072112 TTTTTAGATTTTACAATTGTCCCTCTA
1 TTTTTAGATTTTACAATTTTCCCT-AA
* *
23072139 TTTTTCAAATTTTACAATTTTCCCTTAT
1 TTTTT-AGATTTTACAATTTTCCC-TAA
*
23072167 TTTTTAGATTTTACAATTTTACCTAGA
1 TTTTTAGATTTTACAATTTTCCCTA-A
*
23072194 ATTTTATGATTT
1 TTTTTA-GATTT
23072206 GTTTAGTTTA
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.04
27 26 0.47
28 26 0.47
29 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.05, T:0.55
Consensus pattern (26 bp):
TTTTTAGATTTTACAATTTTCCCTAA
Found at i:23072198 original size:28 final size:27
Alignment explanation
Indices: 23072112--23072186 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 27
23072102 TGACCCCTGT
* *
23072112 TTTTTAGATTTTACAATTGTCCCTCTA
1 TTTTTAGATTTTACAATTTTCCCTCAA
* * *
23072139 TTTTTCAAATTTTACAATTTTCCCTTAT
1 TTTTT-AGATTTTACAATTTTCCCTCAA
23072167 TTTTTAGATTTTACAATTTT
1 TTTTTAGATTTTACAATTTT
23072187 ACCTAGAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 19 0.46
28 22 0.54
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.57
Consensus pattern (27 bp):
TTTTTAGATTTTACAATTTTCCCTCAA
Found at i:23072521 original size:34 final size:33
Alignment explanation
Indices: 23072450--23072560 Score: 93
Period size: 34 Copynumber: 3.3 Consensus size: 33
23072440 TAAGCTGATA
* * ***
23072450 TGTTATAAGCATATTATTTGCTACTGAATTAAAC
1 TGTTATAAGCATATTA-TTGCTACCGTATTGTTC
23072484 TGTTATAAGCATATTGATTGCTACCGTATTGTTC
1 TGTTATAAGCATATT-ATTGCTACCGTATTGTTC
* *
23072518 TGTTAAAAGCATAATTAATT-CTACCATATTGATT-
1 TGTTATAAGCAT-ATT-ATTGCTACCGTATTG-TTC
23072552 TGTT-TAAGC
1 TGTTATAAGC
23072561 TTGCCATATT
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
33 4 0.06
34 52 0.80
35 9 0.14
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.42
Consensus pattern (33 bp):
TGTTATAAGCATATTATTGCTACCGTATTGTTC
Found at i:23072865 original size:22 final size:21
Alignment explanation
Indices: 23072821--23072865 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
23072811 TAATTTATCT
*
23072821 ACAATGAGTGGTTCATCCACA
1 ACAATGAGTGGTTCACCCACA
*
23072842 ACAATGAGTGGTTTTACCCACA
1 ACAATGAGTGG-TTCACCCACA
23072864 AC
1 AC
23072866 TTGGTGTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (21 bp):
ACAATGAGTGGTTCACCCACA
Found at i:23074609 original size:13 final size:14
Alignment explanation
Indices: 23074591--23074623 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
23074581 ATGTGGGTAG
*
23074591 GATTCTATATATCT
1 GATTCTACATATCT
23074605 G-TTCTACATATCT
1 GATTCTACATATCT
23074618 GATTCT
1 GATTCT
23074624 GTTATTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.24, C:0.18, G:0.09, T:0.48
Consensus pattern (14 bp):
GATTCTACATATCT
Found at i:23081349 original size:5 final size:5
Alignment explanation
Indices: 23081339--23081428 Score: 53
Period size: 6 Copynumber: 17.2 Consensus size: 5
23081329 ATTTGTCTTC
* *
23081339 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
*
23081387 AAAAAT AAAAT AAAAT AAAAAT AAGACT -AAAT AAAA- AAAAT A
1 -AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAAT AAAAT AAAAT A
23081429 GGAGGATTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
3 3 0.04
4 6 0.09
5 25 0.37
6 33 0.49
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:23081368 original size:6 final size:6
Alignment explanation
Indices: 23081359--23081410 Score: 63
Period size: 6 Copynumber: 9.0 Consensus size: 6
23081349 AATAAAATTG
* * *
23081359 AAATGA AAATAA AAATCA AAAGAA AAATAA AAAT-A AAAT-A AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
23081405 AAATAA
1 AAATAA
23081411 GACTAAATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
5 10 0.25
6 30 0.75
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:23081371 original size:17 final size:17
Alignment explanation
Indices: 23081349--23081410 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 17
23081339 AAAATAAAAT
* *
23081349 AATAAAATTGAAATGAA
1 AATAAAAATAAAATGAA
23081366 AATAAAAATCAAAA-GAAA
1 AATAAAAAT-AAAATG-AA
23081384 AATAAAAATAAAAT-AA
1 AATAAAAATAAAATGAA
23081400 AATAAAAATAA
1 AATAAAAATAA
23081411 GACTAAATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
16 13 0.32
17 13 0.32
18 14 0.35
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.18
Consensus pattern (17 bp):
AATAAAAATAAAATGAA
Found at i:23081390 original size:11 final size:11
Alignment explanation
Indices: 23081339--23081410 Score: 65
Period size: 11 Copynumber: 6.2 Consensus size: 11
23081329 ATTTGTCTTC
23081339 AAAATAAAATAAT
1 AAAAT-AAA-AAT
**
23081352 AAAATTGAAAT
1 AAAATAAAAAT
23081363 GAAAATAAAAAT
1 -AAAATAAAAAT
*
23081375 CAAAAGAAAAAT
1 -AAAATAAAAAT
23081387 AAAA-ATAAAAT
1 AAAATA-AAAAT
23081398 AAAATAAAAAT
1 AAAATAAAAAT
23081409 AA
1 AA
23081411 GACTAAATAA
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
10 1 0.02
11 23 0.46
12 21 0.42
13 5 0.10
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:23081403 original size:16 final size:16
Alignment explanation
Indices: 23081339--23081423 Score: 77
Period size: 16 Copynumber: 5.2 Consensus size: 16
23081329 ATTTGTCTTC
23081339 AAAATAAAAT--AATA
1 AAAATAAAATAAAATA
* *
23081353 AAATTGAAATGAAAATA
1 AAAATAAAAT-AAAATA
*
23081370 AAAATCAAAAGAAAAATA
1 AAAAT-AAAA-TAAAATA
23081388 AAAATAAAATAAAATA
1 AAAATAAAATAAAATA
*
23081404 AAAATAAGACT-AAATA
1 AAAATAA-AATAAAATA
23081420 AAAA
1 AAAA
23081424 AAATAGGAGG
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
14 8 0.14
16 22 0.38
17 14 0.24
18 14 0.24
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:23097244 original size:25 final size:25
Alignment explanation
Indices: 23097210--23097313 Score: 117
Period size: 25 Copynumber: 4.3 Consensus size: 25
23097200 TCTTAGTGCT
*
23097210 CTCTCTGATTATAAGCACGTTAGTG
1 CTCTCTGATTATAAGCACTTTAGTG
* * *
23097235 CTCTTTGATTATAAGCACATTATTG
1 CTCTCTGATTATAAGCACTTTAGTG
* *
23097260 TTCTCTGATTATTAGCACATTTA-TG
1 CTCTCTGATTATAAGCAC-TTTAGTG
23097285 CTCTCT-A-TAT-AGCACTTTAGTG
1 CTCTCTGATTATAAGCACTTTAGTG
23097307 CTCTCTG
1 CTCTCTG
23097314 TTTAATAGTG
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
21 4 0.06
22 13 0.19
23 3 0.04
24 1 0.01
25 44 0.65
26 3 0.04
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.42
Consensus pattern (25 bp):
CTCTCTGATTATAAGCACTTTAGTG
Found at i:23097531 original size:2 final size:2
Alignment explanation
Indices: 23097519--23097554 Score: 63
Period size: 2 Copynumber: 17.5 Consensus size: 2
23097509 AAATGGTGAA
23097519 AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23097555 AAGTAGTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 31 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:23101146 original size:32 final size:32
Alignment explanation
Indices: 23101105--23101172 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
23101095 AAATGCTATC
23101105 ATTTGTAATTGCTTTATTGGGATAAATAACTA
1 ATTTGTAATTGCTTTATTGGGATAAATAACTA
* *
23101137 ATTTGTAATTGCTTTGTTTGGATAAATAACTA
1 ATTTGTAATTGCTTTATTGGGATAAATAACTA
23101169 ATTT
1 ATTT
23101173 AAGACAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (32 bp):
ATTTGTAATTGCTTTATTGGGATAAATAACTA
Found at i:23102895 original size:26 final size:26
Alignment explanation
Indices: 23102859--23102994 Score: 211
Period size: 26 Copynumber: 5.2 Consensus size: 26
23102849 TGATACAAAT
*
23102859 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
23102885 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* * *
23102911 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
23102937 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
23102963 TGATAAT-GGTTTAGGTAAATGTTTCA
1 TGATAATAGG-TTAGGTAAATGTTTCA
23102989 TGATAA
1 TGATAA
23102995 GAAATTCATG
Statistics
Matches: 101, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
25 2 0.02
26 99 0.98
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:23104508 original size:26 final size:26
Alignment explanation
Indices: 23104479--23104531 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23104469 TTTACAATTT
23104479 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
23104505 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
23104531 T
1 T
23104532 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:23104569 original size:21 final size:20
Alignment explanation
Indices: 23104543--23104585 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
23104533 CATGTTTGAC
23104543 TGTTGTTATT-TACTGCATGCA
1 TGTTGTTATTAT-CTG-ATGCA
23104564 TGTTGTTATTATCTGATGCA
1 TGTTGTTATTATCTGATGCA
23104584 TG
1 TG
23104586 GGATTGGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 13 0.62
22 1 0.05
ACGTcount: A:0.19, C:0.12, G:0.21, T:0.49
Consensus pattern (20 bp):
TGTTGTTATTATCTGATGCA
Found at i:23107242 original size:15 final size:15
Alignment explanation
Indices: 23107222--23107251 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
23107212 TATATACAAA
23107222 GCTTCTCCAGAGTCT
1 GCTTCTCCAGAGTCT
23107237 GCTTCTCCAGAGTCT
1 GCTTCTCCAGAGTCT
23107252 CTATTTATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.33, G:0.20, T:0.33
Consensus pattern (15 bp):
GCTTCTCCAGAGTCT
Found at i:23107474 original size:22 final size:22
Alignment explanation
Indices: 23107446--23107493 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
23107436 ACCCTATGAG
23107446 AAAAAAAATCCTAGATAAAGGA
1 AAAAAAAATCCTAGATAAAGGA
23107468 AAAAAAAATCCTAGATAAAGGA
1 AAAAAAAATCCTAGATAAAGGA
23107490 AAAA
1 AAAA
23107494 GAATACACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.67, C:0.08, G:0.12, T:0.12
Consensus pattern (22 bp):
AAAAAAAATCCTAGATAAAGGA
Found at i:23113323 original size:27 final size:28
Alignment explanation
Indices: 23113220--23113332 Score: 79
Period size: 28 Copynumber: 3.9 Consensus size: 28
23113210 CTATTCAGAA
* *
23113220 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCCATAGCCCAT
* * *
23113247 ATCAGTATTAATTTGGGCCATAACCTCTT
1 ATCAGTATTAATCTGGGCCATAGCC-CAT
**
23113276 A-CAGTAACAGAGTATACTGGGCC-TAGCCCAT
1 ATCAGT-A-TTA--AT-CTGGGCCATAGCCCAT
*
23113307 ATCAGTATTAATCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCCATAGCCC
23113333 TATTACAAGT
Statistics
Matches: 65, Mismatches: 12, Indels: 17
0.69 0.13 0.18
Matches are distributed among these distances:
27 17 0.26
28 22 0.34
29 4 0.06
30 2 0.03
31 4 0.06
32 10 0.15
33 6 0.09
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (28 bp):
ATCAGTATTAATCTGGGCCATAGCCCAT
Found at i:23113365 original size:60 final size:59
Alignment explanation
Indices: 23113230--23113368 Score: 156
Period size: 60 Copynumber: 2.3 Consensus size: 59
23113220 ATCAGTGTTA
* *
23113230 ACTGGGCCTTAGCCCATATCAGTATTAATTTGGGCCATAACCTCTTACAGTAACAGAGTAT
1 ACTGGGCCTT-GCCCATATCAGTATTAATCTGGGCCATAACCTATTACAGT-ACAGAGTAT
* * *
23113291 ACTGGGCCTAGCCCATATCAGTATTAATCTGGGCCGTAGCCCTATTACAAGT-C-GAGATAT
1 ACTGGGCCTTGCCCATATCAGTATTAATCTGGGCCATA-ACCTATTAC-AGTACAGAG-TAT
* *
23113351 ATTGGGTCTTGCCCATAT
1 ACTGGGCCTTGCCCATAT
23113369 TAACACAGTT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
59 3 0.04
60 45 0.67
61 16 0.24
62 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (59 bp):
ACTGGGCCTTGCCCATATCAGTATTAATCTGGGCCATAACCTATTACAGTACAGAGTAT
Found at i:23113404 original size:19 final size:20
Alignment explanation
Indices: 23113361--23113416 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
23113351 ATTGGGTCTT
23113361 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
23113381 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
23113400 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
23113417 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:23121207 original size:10 final size:10
Alignment explanation
Indices: 23121173--23121231 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
23121163 AATTTTAGCT
23121173 TTTATCTTTA
1 TTTATCTTTA
* *
23121183 TTTGTCCTTA
1 TTTATCTTTA
23121193 TTTATCTTTA
1 TTTATCTTTA
*
23121203 ATTATCTTTA
1 TTTATCTTTA
23121213 TTTAT-TTATA
1 TTTATCTT-TA
23121223 TTTATCTTT
1 TTTATCTTT
23121232 TAGAATTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
9 2 0.05
10 37 0.90
11 2 0.05
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:23125197 original size:38 final size:38
Alignment explanation
Indices: 23125155--23125228 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
23125145 ACGTTAAAGA
23125155 TTATAGCTTTCAAATTCATTACATATTGTTACATTCCC
1 TTATAGCTTTCAAATTCATTACATATTGTTACATTCCC
23125193 TTATAGCTTTCAAATTCATTACATATTGTTACATTC
1 TTATAGCTTTCAAATTCATTACATATTGTTACATTC
23125229 TCTTTAGGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.19, G:0.05, T:0.46
Consensus pattern (38 bp):
TTATAGCTTTCAAATTCATTACATATTGTTACATTCCC
Found at i:23125228 original size:19 final size:19
Alignment explanation
Indices: 23125168--23125228 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
23125158 TAGCTTTCAA
23125168 ATTCATTACATATTGTTAC
1 ATTCATTACATATTGTTAC
* * ** * *
23125187 ATTCCCTTATAGCTT-TCAA
1 ATT-CATTACATATTGTTAC
23125206 ATTCATTACATATTGTTAC
1 ATTCATTACATATTGTTAC
23125225 ATTC
1 ATTC
23125229 TCTTTAGGGA
Statistics
Matches: 28, Mismatches: 12, Indels: 4
0.64 0.27 0.09
Matches are distributed among these distances:
18 7 0.25
19 14 0.50
20 7 0.25
ACGTcount: A:0.30, C:0.20, G:0.05, T:0.46
Consensus pattern (19 bp):
ATTCATTACATATTGTTAC
Found at i:23130796 original size:43 final size:43
Alignment explanation
Indices: 23130745--23130863 Score: 202
Period size: 43 Copynumber: 2.8 Consensus size: 43
23130735 TGGCATCTAA
23130745 GCTCGTTGAGAGGTCCGAGTTTATTATGGATGCGAGTATCAAG
1 GCTCGTTGAGAGGTCCGAGTTTATTATGGATGCGAGTATCAAG
* *
23130788 GCTCGTTGAGAGGTCTGAGTTTATTATGGATGCGAGTATCAGG
1 GCTCGTTGAGAGGTCCGAGTTTATTATGGATGCGAGTATCAAG
* *
23130831 GCTCGTTGAGAGGTCCGAGTTCATAATGGATGC
1 GCTCGTTGAGAGGTCCGAGTTTATTATGGATGC
23130864 AATTCATGTA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.22, C:0.14, G:0.34, T:0.30
Consensus pattern (43 bp):
GCTCGTTGAGAGGTCCGAGTTTATTATGGATGCGAGTATCAAG
Found at i:23143108 original size:25 final size:25
Alignment explanation
Indices: 23142989--23143164 Score: 213
Period size: 25 Copynumber: 7.2 Consensus size: 25
23142979 AGCATAGTTG
*
23142989 CTTTATCATATAACTGGAGGCCT-AGCC
1 CTTTAT-A-ATAACTGG-GGCATAAGCC
*
23143016 TCTTT-TAATAATTGGGGCA-AAGCC
1 -CTTTATAATAACTGGGGCATAAGCC
23143040 CTTT-TAATAACTGGGGCATAAG-C
1 CTTTATAATAACTGGGGCATAAGCC
23143063 CTTT-TAATAACT-GGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCC
* *
23143086 ATTTATCATAACTGGGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCC
*
23143111 CTTTATTATAACTGGGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCC
*
23143136 CTTTATCATAACTGGGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCC
23143161 CTTT
1 CTTT
23143165 TACACTTCCT
Statistics
Matches: 135, Mismatches: 8, Indels: 13
0.87 0.05 0.08
Matches are distributed among these distances:
22 9 0.07
23 34 0.25
24 17 0.13
25 69 0.51
26 1 0.01
27 1 0.01
28 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (25 bp):
CTTTATAATAACTGGGGCATAAGCC
Found at i:23143240 original size:20 final size:20
Alignment explanation
Indices: 23143215--23143281 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
23143205 TTATGAATAC
23143215 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
23143235 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
23143255 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
23143275 ATCATGT
1 ATCATGT
23143282 TTACTAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:23150894 original size:31 final size:30
Alignment explanation
Indices: 23150852--23150914 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
23150842 CTTTTTCATA
*
23150852 TTTCATTTTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCAT-ACACTGGGCCGAAGCCT
**
23150883 TTTCATATTTCATATTCTGGGCCGAAGCCT
1 TTTCATATTTCATACACTGGGCCGAAGCCT
23150913 TT
1 TT
23150915 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 17 0.59
31 12 0.41
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.40
Consensus pattern (30 bp):
TTTCATATTTCATACACTGGGCCGAAGCCT
Found at i:23151211 original size:25 final size:25
Alignment explanation
Indices: 23151097--23151273 Score: 238
Period size: 25 Copynumber: 7.2 Consensus size: 25
23151087 AGCATAGCTG
* *
23151097 CTTTATCATATAACTGAGGCCT-AGCC
1 CTTTAT-A-ATAACTGGGGCATAAGCC
23151123 TCTTT-TAATAACTGGGGCA-AAGCC
1 -CTTTATAATAACTGGGGCATAAGCC
23151147 CTTT-TAATAACTGGGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCC
23151171 CTTT-TAATAACTGGGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCC
*
23151195 CTTTATCATAACTGGGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCC
*
23151220 CTTTATTATAACTGGGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCC
* *
23151245 CTTTATCATAACTAGGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCC
23151270 CTTT
1 CTTT
23151274 TACACTTCCT
Statistics
Matches: 141, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
23 18 0.13
24 47 0.33
25 71 0.50
26 1 0.01
27 4 0.03
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
CTTTATAATAACTGGGGCATAAGCC
Found at i:23151349 original size:20 final size:20
Alignment explanation
Indices: 23151324--23151390 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
23151314 TTATGAATAC
23151324 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
23151344 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
23151364 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
23151384 ATCATGT
1 ATCATGT
23151391 TTACTAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:23156938 original size:138 final size:138
Alignment explanation
Indices: 23156735--23157128 Score: 435
Period size: 131 Copynumber: 2.9 Consensus size: 138
23156725 GAGAACGTTG
* * *
23156735 GTCCGCTAGCTATTTTTGGATGTTGCGATCATAAATCGGCAAACCTTTATAACATCAGATGGGAA
1 GTCCGCTAGCTATTTTTGGAGGTTGCGATCATAAATTGACAAACCTTTATAACATCAGATGGGAA
* * * *
23156800 CGTAGGTCCGCTGGCTGTGTCGGAGCTGCGAGCTTAACCTTTTGAGCTCTTAGAATATCACCTAG
66 CGTAGGTCCGCTAGCTGTGTTGGAGCTGCGAGCTTAACCTTTAGAGCTCTTAGAATATCAACTAG
23156865 CAGCATAA
131 CAGCATAA
* * * * * * *
23156873 GTCCACTAGCTATTTTCGAAGGTTGCAATCATAAATTAACAAACCTTTATCACATCAGTTGGGAA
1 GTCCGCTAGCTATTTTTGGAGGTTGCGATCATAAATTGACAAACCTTTATAACATCAGATGGGAA
* * * * ** *
23156938 CGTAGGTCTGCTAGCTATGTTAGAGTTGCGAGCTTAACCCTGCA-AGCTC-------ATCAACTG
66 CGTAGGTCCGCTAGCTGTGTTGGAGCTGCGAGCTTAA-CCTTTAGAGCTCTTAGAATATCAACTA
* *
23156995 GGAGCATAG
130 GCAGCATAA
* * * *
23157004 GTCCGCTAGCTATTTTTGGAGGTTGCGATCATAAACTGACAAACTTTTATAACATCAGCTAGGAA
1 GTCCGCTAGCTATTTTTGGAGGTTGCGATCATAAATTGACAAACCTTTATAACATCAGATGGGAA
* * * * *
23157069 CATAGGTTCGCTAGTTGTGTTGGAGCTACGAGCTTAACCTTTAGAGCTTTTAGAATATCA
66 CGTAGGTCCGCTAGCTGTGTTGGAGCTGCGAGCTTAACCTTTAGAGCTCTTAGAATATCA
23157129 GTTGGAGTGT
Statistics
Matches: 203, Mismatches: 44, Indels: 18
0.77 0.17 0.07
Matches are distributed among these distances:
130 4 0.02
131 101 0.50
138 95 0.47
139 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (138 bp):
GTCCGCTAGCTATTTTTGGAGGTTGCGATCATAAATTGACAAACCTTTATAACATCAGATGGGAA
CGTAGGTCCGCTAGCTGTGTTGGAGCTGCGAGCTTAACCTTTAGAGCTCTTAGAATATCAACTAG
CAGCATAA
Found at i:23159049 original size:2 final size:2
Alignment explanation
Indices: 23158993--23159033 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
23158983 AGACTAATGC
*
23158993 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23159034 ACGTAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:23159709 original size:15 final size:14
Alignment explanation
Indices: 23159689--23159743 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 14
23159679 TAGCATTATT
23159689 TATTATTATATTAAC
1 TATTATTATATT-AC
*
23159704 TGTTATTATTATTAC
1 TATTATTA-TATTAC
*
23159719 TATTATCATATT-C
1 TATTATTATATTAC
*
23159732 -ATTAATATATTA
1 TATTATTATATTA
23159744 TTATCATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
12 9 0.27
13 1 0.03
14 4 0.12
15 15 0.45
16 4 0.12
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (14 bp):
TATTATTATATTAC
Found at i:23159778 original size:38 final size:39
Alignment explanation
Indices: 23159688--23159779 Score: 93
Period size: 38 Copynumber: 2.4 Consensus size: 39
23159678 GTAGCATTAT
* * * *
23159688 TTATTATTATAT-TAACTGTTATTATTATTACTATTATCA
1 TTATTATTATATAT-ATTATTATCATTATTACTATTACCA
*
23159727 -TATTCATTA-ATATATTATTATCATTTTTACTA-TACCA
1 TTATT-ATTATATATATTATTATCATTATTACTATTACCA
23159764 TTATTATTATATATAT
1 TTATTATTATATATAT
23159780 ATATATACCT
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
37 8 0.18
38 31 0.70
39 5 0.11
ACGTcount: A:0.35, C:0.09, G:0.01, T:0.55
Consensus pattern (39 bp):
TTATTATTATATATATTATTATCATTATTACTATTACCA
Found at i:23160318 original size:13 final size:13
Alignment explanation
Indices: 23160300--23160324 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23160290 ATTATGTATG
23160300 TATATATTTCTTT
1 TATATATTTCTTT
23160313 TATATATTTCTT
1 TATATATTTCTT
23160325 ATTACTTCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (13 bp):
TATATATTTCTTT
Found at i:23164236 original size:44 final size:42
Alignment explanation
Indices: 23164176--23164292 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 42
23164166 AGGATTTTCG
* * *
23164176 ATATTTGTTTTGCGTGTAAGACCATGTCTGGAACGTTGGCATC
1 ATATCTGTTTT-CGTGTAAGACCATGTCTGGAACATCGGCATC
*
23164219 A-ACTTCTGTTTTACGTGTAAGACCATGTCTGGGACATCGGCATC
1 ATA--TCTGTTTT-CGTGTAAGACCATGTCTGGAACATCGGCATC
* * *
23164263 ATATCCGATTTCGTGTAAGACCCTGTCTGG
1 ATATCTGTTTTCGTGTAAGACCATGTCTGG
23164293 GACAGTGGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
42 19 0.30
43 7 0.11
44 36 0.57
45 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (42 bp):
ATATCTGTTTTCGTGTAAGACCATGTCTGGAACATCGGCATC
Found at i:23164291 original size:42 final size:42
Alignment explanation
Indices: 23164188--23164304 Score: 130
Period size: 42 Copynumber: 2.7 Consensus size: 42
23164178 ATTTGTTTTG
* * * *
23164188 CGTGTAAGACCATGTCTGGAACGTTGGCATCAACTTCTGTTTTA
1 CGTGTAAGACCATGTCTGGGAC-ATGGCATCAAC-TCCGATTTA
23164232 CGTGTAAGACCATGTCTGGGACATCGGCATCATA-TCCGATTT-
1 CGTGTAAGACCATGTCTGGGACAT-GGCATCA-ACTCCGATTTA
*
23164274 CGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 CGTGTAAGACCATGTCTGGGACA-TGGCATC
23164305 GATGTTTGAT
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
42 28 0.43
43 8 0.12
44 28 0.43
45 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATGGCATCAACTCCGATTTA
Found at i:23167000 original size:29 final size:29
Alignment explanation
Indices: 23166968--23167027 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
23166958 GAGTAAGAAA
*
23166968 GTGTGCAAAATTTGAGACCGAGTGGCAAT
1 GTGTGCAAAATTCGAGACCGAGTGGCAAT
*
23166997 GTGTGCAAAATTCGAGACTGAGTGGCAAT
1 GTGTGCAAAATTCGAGACCGAGTGGCAAT
23167026 GT
1 GT
23167028 TTCTCATGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (29 bp):
GTGTGCAAAATTCGAGACCGAGTGGCAAT
Found at i:23171288 original size:17 final size:17
Alignment explanation
Indices: 23171249--23171291 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
23171239 CTATGATTGT
**
23171249 ATTGA-ATTTGATGTTA
1 ATTGACATTTGATGGAA
*
23171265 ATGGACATTTGATGGAA
1 ATTGACATTTGATGGAA
23171282 ATTGACATTT
1 ATTGACATTT
23171292 TAAATGAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.42
Consensus pattern (17 bp):
ATTGACATTTGATGGAA
Found at i:23175637 original size:44 final size:44
Alignment explanation
Indices: 23175557--23175640 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
23175547 ATTTCCGATA
* * **
23175557 TCTGTTTTGCGTGTAAGACCACGTCTGAGACGTTGGCATCAACT
1 TCTGTTTTACATGTAAGACCACGTCTGAGAAATTGGCATCAACT
* *
23175601 TCTGTTTTACATGTAAGACCATGTCTGGGAAATTGGCATC
1 TCTGTTTTACATGTAAGACCACGTCTGAGAAATTGGCATC
23175641 GTATTCGATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (44 bp):
TCTGTTTTACATGTAAGACCACGTCTGAGAAATTGGCATCAACT
Found at i:23180451 original size:2 final size:2
Alignment explanation
Indices: 23180444--23180469 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
23180434 TAAACCCAAC
23180444 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
23180470 TTAATTCTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23188750 original size:18 final size:17
Alignment explanation
Indices: 23188697--23188746 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
23188687 TATATTATAA
23188697 TATTAATTAATAAAATAT
1 TATT-ATTAATAAAATAT
* *
23188715 TAGTACTTATTAAAATAT
1 TATTA-TTAATAAAATAT
23188733 TATTATTAATAAAA
1 TATTATTAATAAAA
23188747 ATATCATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 9 0.33
18 18 0.67
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (17 bp):
TATTATTAATAAAATAT
Found at i:23196403 original size:21 final size:20
Alignment explanation
Indices: 23196373--23196412 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
23196363 TCTTTTTCAA
23196373 TCTCAATCTCGTTTTGCTTTC
1 TCTCAATCTC-TTTTGCTTTC
* *
23196394 TCTCACTCTCTTTTTCTTT
1 TCTCAATCTCTTTTGCTTT
23196413 TTCAATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.07, C:0.30, G:0.05, T:0.57
Consensus pattern (20 bp):
TCTCAATCTCTTTTGCTTTC
Found at i:23196476 original size:34 final size:34
Alignment explanation
Indices: 23196399--23196480 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 34
23196389 CTTTCTCTCA
*
23196399 CTCTCTTTTTCTTTTTCAATTTTTTTCATTCATT
1 CTCTCTTTTTCTTTTTCAATTTATTTCATTCATT
*
23196433 -TCTTTTTTTCTTTTCTCAATTTCATTTCA-T-ATT
1 CTCTCTTTTTCTTTT-TCAATTT-ATTTCATTCATT
*
23196466 CTCTCATTTTCTTTT
1 CTCTCTTTTTCTTTT
23196481 ATTAGCATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
33 16 0.39
34 20 0.49
35 5 0.12
ACGTcount: A:0.12, C:0.21, G:0.00, T:0.67
Consensus pattern (34 bp):
CTCTCTTTTTCTTTTTCAATTTATTTCATTCATT
Found at i:23198450 original size:21 final size:20
Alignment explanation
Indices: 23198421--23198460 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
23198411 CTTTGAAACA
*
23198421 GGGCACACGCTCATGTGGAT
1 GGGCACACGCCCATGTGGAT
*
23198441 GGGCAACACGCCCGTGTGGA
1 GGGC-ACACGCCCATGTGGA
23198461 ACTTGAACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.20, C:0.28, G:0.38, T:0.15
Consensus pattern (20 bp):
GGGCACACGCCCATGTGGAT
Found at i:23204818 original size:15 final size:15
Alignment explanation
Indices: 23204798--23204832 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
23204788 TTGACCGTAT
23204798 GTCACACACGGCCTA
1 GTCACACACGGCCTA
23204813 GT--CACACGGCCTA
1 GTCACACACGGCCTA
23204826 GTCACAC
1 GTCACAC
23204833 GCCTATGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
13 13 0.72
15 5 0.28
ACGTcount: A:0.26, C:0.40, G:0.20, T:0.14
Consensus pattern (15 bp):
GTCACACACGGCCTA
Found at i:23204820 original size:13 final size:13
Alignment explanation
Indices: 23204802--23204837 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
23204792 CCGTATGTCA
23204802 CACACGGCCTAGT
1 CACACGGCCTAGT
23204815 CACACGGCCTAGT
1 CACACGGCCTAGT
23204828 CACAC-GCCTA
1 CACACGGCCTA
23204838 TGTGTCTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 5 0.22
13 18 0.78
ACGTcount: A:0.25, C:0.42, G:0.19, T:0.14
Consensus pattern (13 bp):
CACACGGCCTAGT
Found at i:23205795 original size:49 final size:49
Alignment explanation
Indices: 23205675--23205797 Score: 178
Period size: 49 Copynumber: 2.5 Consensus size: 49
23205665 GGCGATGCAG
*
23205675 TGTCCCAAACAGGTCTTACACTAACTTTCATATATCGAGGTTGATGCCA
1 TGTCCCAAACAGGTCTTACACTGACTTTCATATATCGAGGTTGATGCCA
* *
23205724 TGTCCCATAA-AAGTCTTACACTGGCTTTCATATATCG-GTGTTGATGCCA
1 TGTCCCA-AACAGGTCTTACACTGACTTTCATATATCGAG-GTTGATGCCA
*
23205773 TGTCCCAGACAGGTCTTACACTGAC
1 TGTCCCAAACAGGTCTTACACTGAC
23205798 ACACAACAAG
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
48 2 0.03
49 61 0.94
50 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (49 bp):
TGTCCCAAACAGGTCTTACACTGACTTTCATATATCGAGGTTGATGCCA
Found at i:23212737 original size:21 final size:21
Alignment explanation
Indices: 23212711--23212750 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23212701 GAAAGTAAGG
*
23212711 TATACAAGCTAAAAAAAGCAC
1 TATACAAACTAAAAAAAGCAC
*
23212732 TATACAAACTAAAACAAGC
1 TATACAAACTAAAAAAAGC
23212751 TCCAAGAGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.20, G:0.07, T:0.15
Consensus pattern (21 bp):
TATACAAACTAAAAAAAGCAC
Found at i:23214137 original size:31 final size:31
Alignment explanation
Indices: 23214099--23214160 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
23214089 ATTTCGGTAG
23214099 AGAAAATGAATAATGAAGATGAAGCAAATTT
1 AGAAAATGAATAATGAAGATGAAGCAAATTT
23214130 AGAAAATGAATAATGAAGATGAAGCAAATTT
1 AGAAAATGAATAATGAAGATGAAGCAAATTT
23214161 TGTTTTGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.55, C:0.03, G:0.19, T:0.23
Consensus pattern (31 bp):
AGAAAATGAATAATGAAGATGAAGCAAATTT
Found at i:23217972 original size:11 final size:11
Alignment explanation
Indices: 23217956--23217980 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23217946 TTTATTTATG
23217956 TTTCGTTTCGT
1 TTTCGTTTCGT
23217967 TTTCGTTTCGT
1 TTTCGTTTCGT
23217978 TTT
1 TTT
23217981 ATGTATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.16, G:0.16, T:0.68
Consensus pattern (11 bp):
TTTCGTTTCGT
Found at i:23224107 original size:19 final size:21
Alignment explanation
Indices: 23224066--23224109 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
23224056 GTAAATATTC
23224066 ATTTATACATATTTATTAGTA
1 ATTTATACATATTTATTAGTA
*
23224087 ATTTATATATATTT-TTA-TA
1 ATTTATACATATTTATTAGTA
23224106 ATTT
1 ATTT
23224110 TAAAAAATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.27
20 3 0.14
21 13 0.59
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTTATACATATTTATTAGTA
Found at i:23224835 original size:28 final size:28
Alignment explanation
Indices: 23224801--23224863 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
23224791 TCTCATATTA
23224801 ATGGGGTATAGGAAAAATCTCATAACTT
1 ATGGGGTATAGGAAAAATCTCATAACTT
* * * *
23224829 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAATCTCATAACTT
23224857 ATGGGGT
1 ATGGGGT
23224864 TGATAATGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAATCTCATAACTT
Found at i:23228599 original size:28 final size:27
Alignment explanation
Indices: 23228559--23228617 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 27
23228549 GTCATTATCA
23228559 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAA-TCTTCCTAT
* * *
23228587 ACCCCATAAGTTATGAGATTTTCCTAT
1 ACCCCATAAGTTATAAAATCTTCCTAT
23228614 ACCC
1 ACCC
23228618 ATTAATATGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 12 0.43
28 16 0.57
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.32
Consensus pattern (27 bp):
ACCCCATAAGTTATAAAATCTTCCTAT
Found at i:23228777 original size:14 final size:14
Alignment explanation
Indices: 23228737--23228777 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
23228727 AAAAAGAAGA
23228737 TACACTCTCTCTTC
1 TACACTCTCTCTTC
23228751 TACA-T-TCTC-TC
1 TACACTCTCTCTTC
*
23228762 TACACTCTTTCTTC
1 TACACTCTCTCTTC
23228776 TA
1 TA
23228778 TCACATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 4 0.17
14 8 0.35
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (14 bp):
TACACTCTCTCTTC
Found at i:23234009 original size:28 final size:28
Alignment explanation
Indices: 23233969--23234031 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
23233959 GTCATTATCA
23233969 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * * *
23233997 ACCCCATAAGTTATGAGATTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
23234025 ACCCCAT
1 ACCCCAT
23234032 TAATATGGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:23234190 original size:14 final size:14
Alignment explanation
Indices: 23234150--23234190 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
23234140 AAAAAGAAGA
23234150 TACACTCTCTCTTC
1 TACACTCTCTCTTC
23234164 TACA-T-TCTC-TC
1 TACACTCTCTCTTC
*
23234175 TACACTCTTTCTTC
1 TACACTCTCTCTTC
23234189 TA
1 TA
23234191 TCACATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 4 0.17
14 8 0.35
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (14 bp):
TACACTCTCTCTTC
Found at i:23245665 original size:42 final size:42
Alignment explanation
Indices: 23245598--23245700 Score: 152
Period size: 42 Copynumber: 2.5 Consensus size: 42
23245588 TGTGGATACT
* * * *
23245598 CCACAGCTTGTGTGAGTAGCATCGTATAGCTTACATTCCGAC
1 CCACAGCTCGTGTGAGCAGCATCGTATAACTTACATTCCAAC
**
23245640 CCACAGCTCGTGTGAGCAGTTTCGTATAACTTACATTCCAAC
1 CCACAGCTCGTGTGAGCAGCATCGTATAACTTACATTCCAAC
23245682 CCACAGCTCGTGTGAGCAG
1 CCACAGCTCGTGTGAGCAG
23245701 GCCCATTTCA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (42 bp):
CCACAGCTCGTGTGAGCAGCATCGTATAACTTACATTCCAAC
Found at i:23246615 original size:37 final size:37
Alignment explanation
Indices: 23246565--23246637 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
23246555 ATTCTAGGTG
23246565 AATTTTGGGTCCACAAGACCTAAGACACAGGCGTGTA
1 AATTTTGGGTCCACAAGACCTAAGACACAGGCGTGTA
* *
23246602 AATTTTGGGTCCACAAGGCCTAAGACACAGTCGTGT
1 AATTTTGGGTCCACAAGACCTAAGACACAGGCGTGT
23246638 GACTTAGCCG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (37 bp):
AATTTTGGGTCCACAAGACCTAAGACACAGGCGTGTA
Found at i:23247808 original size:16 final size:16
Alignment explanation
Indices: 23247787--23247821 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
23247777 AAACAATTGA
*
23247787 ATTATAGCTCTATTTC
1 ATTATAGCTCTATTCC
*
23247803 ATTATATCTCTATTCC
1 ATTATAGCTCTATTCC
23247819 ATT
1 ATT
23247822 TGCTCCAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.20, G:0.03, T:0.51
Consensus pattern (16 bp):
ATTATAGCTCTATTCC
Found at i:23249253 original size:21 final size:21
Alignment explanation
Indices: 23249224--23249263 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
23249214 AGCTCTTGAA
23249224 GCTTGTTTTAG-TCTGTATAGT
1 GCTTGTTTTAGCT-TGTATAGT
*
23249245 GCTTTTTTTAGCTTGTATA
1 GCTTGTTTTAGCTTGTATA
23249264 CCTTACTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.15, C:0.10, G:0.20, T:0.55
Consensus pattern (21 bp):
GCTTGTTTTAGCTTGTATAGT
Found at i:23254030 original size:18 final size:18
Alignment explanation
Indices: 23254013--23254062 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
23254003 TTAATGATAT
23254013 TTTTATTAA-TAATAATA
1 TTTTATTAAGTAATAATA
*
23254030 TTTTAATAAGTAATAATA
1 TTTTATTAAGTAATAATA
*
23254048 TTTTATTAATTAATA
1 TTTTATTAAGTAATA
23254063 TTATAATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 8 0.28
18 21 0.72
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
TTTTATTAAGTAATAATA
Found at i:23263695 original size:46 final size:45
Alignment explanation
Indices: 23263628--23263801 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 45
23263618 TGTAACCCGC
** *
23263628 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCAT
* * *
23263674 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGCAT
* *** *
23263720 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCAT
*
23263767 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
23263802 CATGCTCAAC
Statistics
Matches: 104, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 66 0.63
47 35 0.34
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGCAT
Found at i:23263749 original size:93 final size:93
Alignment explanation
Indices: 23263637--23263806 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
23263627 CCCATAAGCA
* *
23263637 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
23263702 GAGTTCGGATGCCTAGTTACATCTCTCG
66 GAGTTCGCATGCCTAGTTACATCTCTCG
* *
23263730 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAT
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
23263795 GAGTTCGCATGC
66 GAGTTCGCATGC
23263807 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGCATGCCTAGTTACATCTCTCG
Found at i:23263822 original size:46 final size:45
Alignment explanation
Indices: 23263679--23263822 Score: 118
Period size: 46 Copynumber: 3.1 Consensus size: 45
23263669 CGCATCCATA
*
23263679 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGCATGCC-A---ACCATC-CT
* * * *
23263728 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-G-CATGC-CAACCATCCT
*
23263772 AGTGAACTCGGACTCAACTCAATGAGTTCGCATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGCATGC-CAACCATCCT
23263818 AGTGA
1 AGTGA
23263823 CATGTCACTT
Statistics
Matches: 76, Mismatches: 11, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
44 10 0.13
45 1 0.01
46 30 0.39
47 29 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGCATGCCAACCATCCT
Found at i:23265255 original size:40 final size:40
Alignment explanation
Indices: 23265211--23265306 Score: 138
Period size: 40 Copynumber: 2.4 Consensus size: 40
23265201 TACAAATAGA
* * *
23265211 GGCACTTATGTGCATTTAAAAGTACCAAAGTCTAAGCAGG
1 GGCACGTATGTGCATTTAAAAGTACCAAAGTCCAAACAGG
* **
23265251 GGCACGTATGTGCAATTAAGGGTACCAAAGTCCAAACAGG
1 GGCACGTATGTGCATTTAAAAGTACCAAAGTCCAAACAGG
23265291 GGCACGTATGTGCATT
1 GGCACGTATGTGCATT
23265307 CAAGGTCATT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (40 bp):
GGCACGTATGTGCATTTAAAAGTACCAAAGTCCAAACAGG
Found at i:23271654 original size:107 final size:107
Alignment explanation
Indices: 23271468--23271681 Score: 367
Period size: 107 Copynumber: 2.0 Consensus size: 107
23271458 ACAATAACCC
*
23271468 GTATCATTGTTTAAATCAAAGTATTTAGCTTAAGAAGAGTTGTTTTAAGTACATATTAACTTAGT
1 GTATCATTGTTTAAATCAAAGTATTTAGCATAAGAAGAGTTGTTTTAAGTACATATTAACTTAGT
*
23271533 CTTTTTATATATCTCTCTTTTCCCTTCCCTTTTGCATGCATT
66 CTTTCTATATATCTCTCTTTTCCCTTCCCTTTTGCATGCATT
* *
23271575 GTATCATTGTTTAAATCAAAGTATTTAGCATAGGGAA-AGTTGTTTTAAGTACATATTAAGTTAG
1 GTATCATTGTTTAAATCAAAGTATTTAGCATA-AGAAGAGTTGTTTTAAGTACATATTAACTTAG
*
23271639 TCTTTCTATATATCTCTCTTTTTCCTTCCCTTTTGCATGCATT
65 TCTTTCTATATATCTCTCTTTTCCCTTCCCTTTTGCATGCATT
23271682 TCAACAGATA
Statistics
Matches: 101, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
107 98 0.97
108 3 0.03
ACGTcount: A:0.26, C:0.15, G:0.12, T:0.46
Consensus pattern (107 bp):
GTATCATTGTTTAAATCAAAGTATTTAGCATAAGAAGAGTTGTTTTAAGTACATATTAACTTAGT
CTTTCTATATATCTCTCTTTTCCCTTCCCTTTTGCATGCATT
Found at i:23273126 original size:2 final size:2
Alignment explanation
Indices: 23273119--23273157 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
23273109 ATAAATACAA
23273119 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23273158 ATTTACATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:23277999 original size:234 final size:234
Alignment explanation
Indices: 23277590--23278054 Score: 903
Period size: 234 Copynumber: 2.0 Consensus size: 234
23277580 CTGTTTGAAG
23277590 AGTATAAAAATGTTGTCAATTCTACATACGAGGAATAATAATAGAAAACAAAACGGTGGTTCTTT
1 AGTATAAAAATGTTGTCAATTCTACATACGAGGAATAATAATAGAAAACAAAACGGTGGTTCTTT
23277655 ATATCAGTTCAAGGATCTCAGCTCAGTGCTGTATCTATGTTTAACAAAATCATTCCATTTGCTAG
66 ATATCAGTTCAAGGATCTCAGCTCAGTGCTGTATCTATGTTTAACAAAATCATTCCATTTGCTAG
23277720 AAGCCACATAGTAGATTCATTACATACAAATAAGTAACCATCAACAAGCTTCATCTATGCTTCCA
131 AAGCCACATAGTAGATTCATTACATACAAATAAGTAACCATCAACAAGCTTCATCTATGCTTCCA
23277785 TTAGTCGAATCCAACAGGATGAAGTATTAGAAATTCAAC
196 TTAGTCGAATCCAACAGGATGAAGTATTAGAAATTCAAC
*
23277824 AGTATAAAAATGTTGTCAATTCTACATACGAGGAATAATAATAGAAAACGAAACGGTGGTTCTTT
1 AGTATAAAAATGTTGTCAATTCTACATACGAGGAATAATAATAGAAAACAAAACGGTGGTTCTTT
*
23277889 ATATCAGTTCAAGGATCTCAGCTCAGTGCTGTATCTATGTTTAGCAAAATCATTCCATTTGCTAG
66 ATATCAGTTCAAGGATCTCAGCTCAGTGCTGTATCTATGTTTAACAAAATCATTCCATTTGCTAG
*
23277954 AAGCCACATAGTAGATTCGTTACATACAAATAAGTAACCATCAACAAGCTTCATCTATGCTTCCA
131 AAGCCACATAGTAGATTCATTACATACAAATAAGTAACCATCAACAAGCTTCATCTATGCTTCCA
23278019 TTAGTCGAATCCAACAGGATGAAGTATTAGAAATTC
196 TTAGTCGAATCCAACAGGATGAAGTATTAGAAATTC
23278055 CAAGTACTCA
Statistics
Matches: 228, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
234 228 1.00
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (234 bp):
AGTATAAAAATGTTGTCAATTCTACATACGAGGAATAATAATAGAAAACAAAACGGTGGTTCTTT
ATATCAGTTCAAGGATCTCAGCTCAGTGCTGTATCTATGTTTAACAAAATCATTCCATTTGCTAG
AAGCCACATAGTAGATTCATTACATACAAATAAGTAACCATCAACAAGCTTCATCTATGCTTCCA
TTAGTCGAATCCAACAGGATGAAGTATTAGAAATTCAAC
Found at i:23279775 original size:54 final size:54
Alignment explanation
Indices: 23279707--23279816 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
23279697 AGGCCTACCA
*
23279707 TTGGCTTAATAGTAACGTCAATATCTTCACCAGCAGAAATATAATATATCCTTC
1 TTGGCTTAACAGTAACGTCAATATCTTCACCAGCAGAAATATAATATATCCTTC
23279761 TTGGCTTAACAGTAACGTCAATATCTTCACCAGCAGAAATATAATATATCCTTC
1 TTGGCTTAACAGTAACGTCAATATCTTCACCAGCAGAAATATAATATATCCTTC
23279815 TT
1 TT
23279817 ACCTCAAATT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.34
Consensus pattern (54 bp):
TTGGCTTAACAGTAACGTCAATATCTTCACCAGCAGAAATATAATATATCCTTC
Done.