Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 97 of 444
Found at i:23551958 original size:150 final size:151
Alignment explanation
Indices: 23551412--23552001 Score: 675
Period size: 151 Copynumber: 3.9 Consensus size: 151
23551402 TTGAAAAACG
* *
23551412 GAAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCT-GACATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
* * *
23551477 TTTTTACAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATAT
64 TTTTGACAACAGAAATTGAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
* * *
23551541 GAGCTGATTTTTTTTTGAAAGGCA
129 GAGTTGA-TTTTTTTTGAAAAGTA
* * * * * * * *
23551565 GAAATTGAAAATACCTTA-ACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGA-ATT
1 GAAATTGAAAATACCTGACATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
23551628 TTGA-AACAGAAA-TAAAAATTATCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGA
66 TTGACAACAGAAATTGAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
23551691 GTTGATTTTTTATTTTTG-AAAGATA
131 GTTGA---TTT-TTTTTGAAAAG-TA
* * * *
23551716 GAAATTGAAATTACCTTAGC--GTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTGA-CATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * * *
23551779 TTTGACAATAGAAATTG-TAATTACCTCAGCATGTCCCGTGGCTCAACTCACCTCTCGCAATATG
65 TTTGACAACAGAAATTGAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
23551843 AGTTGA-TTCTTTTGAAAAGTA
130 AGTTGATTTTTTTTGAAAAGTA
* * *
23551864 GAAATTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCCCGCAACATGAGTTGA-TT
1 GAAATTGAAAATACCT-GACATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * *
23551928 TTTGACAAACAGCAATTGAAAA-TACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCCCACAATA
65 TTTGAC-AACAGAAATTGAAAATTACCTCAGCGTGTCCC-GAGGCTCAACTCACCTCTCGCAATA
23551991 TGAGTTGATTT
128 TGAGTTGATTT
23552002 AAAAAACAGA
Statistics
Matches: 374, Mismatches: 45, Indels: 38
0.82 0.10 0.08
Matches are distributed among these distances:
147 1 0.00
148 80 0.21
149 23 0.06
150 92 0.25
151 100 0.27
152 6 0.02
153 71 0.19
154 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (151 bp):
GAAATTGAAAATACCTGACATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTGACAACAGAAATTGAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTTGAAAAGTA
Found at i:23562669 original size:24 final size:24
Alignment explanation
Indices: 23562637--23562743 Score: 71
Period size: 24 Copynumber: 4.5 Consensus size: 24
23562627 TATATATATG
*
23562637 TATATATAATAGTATTTAAGAATA
1 TATACATAATAGTATTTAAGAATA
* *
23562661 TATACATAAGA-TGATATAA-AATA
1 TATACATAATAGT-ATTTAAGAATA
*
23562684 CATACATGGAATAGTA--TAAGAAATA
1 TATACAT--AATAGTATTTAAG-AATA
* * *
23562709 TATA-ACTAATGGTATTAAAAAATA
1 TATACA-TAATAGTATTTAAGAATA
23562733 TATACATAATA
1 TATACATAATA
23562744 TATATAAAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 20
0.68 0.11 0.22
Matches are distributed among these distances:
23 20 0.32
24 27 0.43
25 15 0.24
26 1 0.02
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (24 bp):
TATACATAATAGTATTTAAGAATA
Found at i:23562678 original size:36 final size:36
Alignment explanation
Indices: 23562612--23562683 Score: 85
Period size: 36 Copynumber: 2.0 Consensus size: 36
23562602 ACACAATATG
* * *
23562612 GTATTTAAATATATATATATATATGTATATATAATA
1 GTATTTAAATATATACATATAGATGTATATAAAATA
23562648 GTATTTAAGAATATATACATA-AGATG-ATATAAAATA
1 GTATTT-A-AATATATACATATAGATGTATATAAAATA
23562684 CATACATGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
36 15 0.48
37 5 0.16
38 11 0.35
ACGTcount: A:0.50, C:0.01, G:0.08, T:0.40
Consensus pattern (36 bp):
GTATTTAAATATATACATATAGATGTATATAAAATA
Found at i:23562754 original size:11 final size:11
Alignment explanation
Indices: 23562727--23562769 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
23562717 ATGGTATTAA
*
23562727 AAAATATATAC
1 AAAATATATAT
*
23562738 ATAATATATAT
1 AAAATATATAT
*
23562749 AAAATACATAT
1 AAAATATATAT
*
23562760 AATATATATA
1 AAAATATATA
23562770 CGTATTAGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATATATAT
Found at i:23564311 original size:2 final size:2
Alignment explanation
Indices: 23564304--23564346 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
23564294 CTTTCCTTGC
23564304 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23564346 A
1 A
23564347 AAATAAAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:23565422 original size:23 final size:25
Alignment explanation
Indices: 23565396--23565442 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
23565386 TATCATTCAT
*
23565396 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
23565419 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
23565443 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:23565763 original size:46 final size:46
Alignment explanation
Indices: 23565703--23566014 Score: 419
Period size: 46 Copynumber: 7.0 Consensus size: 46
23565693 TTTGACGTGA
* * * * *
23565703 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * * *
23565749 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
23565795 TGCCATGGTATCTTTCAACCATGGTCTTA-TACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACT-CATTTCATATCAGGT
*
23565841 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
23565887 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
23565933 TGCCATGGTATCTTTCAACCATGGTCTTA--CA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
23565971 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
23566015 AGAGCACACT
Statistics
Matches: 243, Mismatches: 12, Indels: 22
0.88 0.04 0.08
Matches are distributed among these distances:
38 34 0.14
39 1 0.00
40 2 0.01
41 1 0.00
43 1 0.00
44 2 0.01
45 6 0.02
46 196 0.81
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:23565979 original size:38 final size:38
Alignment explanation
Indices: 23565928--23566003 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
23565918 CATTTCATAT
23565928 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
23565966 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
23566004 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:23568821 original size:21 final size:20
Alignment explanation
Indices: 23568780--23568838 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
23568770 TTTCTTCCTC
* * *
23568780 TGTTCTTTGTTTCTATCTTT
1 TGTTCTTTATTTATATATTT
23568800 TGTTGCTTTATTTATATATTT
1 TGTT-CTTTATTTATATATTT
23568821 TG-T-TTTATGTTATATATT
1 TGTTCTTTAT-TTATATATT
23568839 ATAATAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 5 0.15
19 9 0.26
20 5 0.15
21 15 0.44
ACGTcount: A:0.15, C:0.07, G:0.10, T:0.68
Consensus pattern (20 bp):
TGTTCTTTATTTATATATTT
Found at i:23568854 original size:3 final size:3
Alignment explanation
Indices: 23568839--23568879 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
23568829 GTTATATATT
*
23568839 ATA ATA AT- TTA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
23568880 CATTTACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 3 0.09
3 31 0.91
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:23572445 original size:48 final size:46
Alignment explanation
Indices: 23572349--23572445 Score: 140
Period size: 48 Copynumber: 2.1 Consensus size: 46
23572339 CAGGACAAAA
* *
23572349 AATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGAGACAGG
* *
23572395 AATGAGCCATGTAAGCCCATAATATATATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGCCCAT-AT-CAGATATATGGCATTGGAGACAGG
23572443 AAT
1 AAT
23572446 AATTCATGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
46 19 0.42
47 2 0.04
48 24 0.53
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (46 bp):
AATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGAGACAGG
Found at i:23577721 original size:41 final size:41
Alignment explanation
Indices: 23577604--23577762 Score: 194
Period size: 41 Copynumber: 3.9 Consensus size: 41
23577594 GTTTTCACAA
* * * *
23577604 AAACGCTGCTAAAAAACTGAGTAATAGTGGCGTTTTTGCTCC
1 AAACGCCGCT-AAAAACTGAGAAATAGCGGCGTTTTTGGTCC
* * *
23577646 AAACGCCGCT-AAAACTGAGTAATAGCTGCATTTTTGGTCC
1 AAACGCCGCTAAAAACTGAGAAATAGCGGCGTTTTTGGTCC
* * *
23577686 AAATGCCGCTAAAAACTTAGAAATAGCGGCGTTTTTAGTCC
1 AAACGCCGCTAAAAACTGAGAAATAGCGGCGTTTTTGGTCC
* *
23577727 AAACGCCACTAAAAACTGAGAAGTAGCGGCGTTTTT
1 AAACGCCGCTAAAAACTGAGAAATAGCGGCGTTTTT
23577763 TTAGCAAACG
Statistics
Matches: 101, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
40 35 0.35
41 57 0.56
42 9 0.09
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (41 bp):
AAACGCCGCTAAAAACTGAGAAATAGCGGCGTTTTTGGTCC
Found at i:23578148 original size:2 final size:2
Alignment explanation
Indices: 23578141--23578169 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
23578131 TTCTAAAAAC
23578141 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23578170 AACCTTAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23578534 original size:19 final size:19
Alignment explanation
Indices: 23578512--23578553 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
23578502 CTTAGTACAT
23578512 GTTTAGAGTATTATATATG
1 GTTTAGAGTATTATATATG
23578531 GTTTAGAGTATTATATATG
1 GTTTAGAGTATTATATATG
23578550 GTTT
1 GTTT
23578554 TAGGGTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (19 bp):
GTTTAGAGTATTATATATG
Found at i:23579451 original size:18 final size:18
Alignment explanation
Indices: 23579427--23579474 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
23579417 CTTCCAAAAC
*
23579427 AAAATTTCCCCAATTCC-
1 AAAATTTCCCCAATCCCT
*
23579444 ACAAATTT-CCTAATCCCT
1 A-AAATTTCCCCAATCCCT
23579462 AAAATTTCCCCAA
1 AAAATTTCCCCAA
23579475 AATCCATAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.38, C:0.33, G:0.00, T:0.29
Consensus pattern (18 bp):
AAAATTTCCCCAATCCCT
Found at i:23581698 original size:57 final size:57
Alignment explanation
Indices: 23581637--23581750 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
23581627 TATTTCTATC
*
23581637 ACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAATAT
1 ACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAATAT
23581694 ACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAATAT
1 ACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAATAT
23581751 TTAATAAAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.41, C:0.11, G:0.04, T:0.44
Consensus pattern (57 bp):
ACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAATAT
Found at i:23581827 original size:24 final size:24
Alignment explanation
Indices: 23581800--23581870 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
23581790 ATTATTATTG
*
23581800 AAATATTCTCGTCTGTTTTATCAC
1 AAATATTATCGTCTGTTTTATCAC
* *
23581824 AAATATTATTGTCTATTTTATCAC
1 AAATATTATCGTCTGTTTTATCAC
*
23581848 AAATATTATCGTCCGTTTTATCA
1 AAATATTATCGTCTGTTTTATCA
23581871 TCTAAGTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.30, C:0.17, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCTGTTTTATCAC
Found at i:23582076 original size:28 final size:29
Alignment explanation
Indices: 23582044--23582116 Score: 130
Period size: 28 Copynumber: 2.6 Consensus size: 29
23582034 AATGACATGT
*
23582044 ATATTATTTAATTAAAATAATTTTT-TCA
1 ATATTATTTAATTAAAATAATTTTTATAA
23582072 ATATTATTTAATTAAAATAATTTTTATAA
1 ATATTATTTAATTAAAATAATTTTTATAA
23582101 ATATTATTTAATTAAA
1 ATATTATTTAATTAAA
23582117 TATTATTTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
28 25 0.58
29 18 0.42
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (29 bp):
ATATTATTTAATTAAAATAATTTTTATAA
Found at i:23582116 original size:15 final size:15
Alignment explanation
Indices: 23582044--23582127 Score: 88
Period size: 15 Copynumber: 5.8 Consensus size: 15
23582034 AATGACATGT
23582044 ATATTATTTAATTAA
1 ATATTATTTAATTAA
* * *
23582059 A-ATAATTT-TTTCA
1 ATATTATTTAATTAA
23582072 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
23582088 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
23582101 ATATTATTTAATTAA
1 ATATTATTTAATTAA
23582116 ATATTATTTAAT
1 ATATTATTTAAT
23582128 CCGCAACTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
12 3 0.05
13 11 0.20
14 14 0.25
15 19 0.34
16 6 0.11
17 3 0.05
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:23582272 original size:9 final size:9
Alignment explanation
Indices: 23582240--23582491 Score: 210
Period size: 9 Copynumber: 28.4 Consensus size: 9
23582230 AATATTTAAC
*
23582240 ATAACTTAC
1 ATAACTTAT
* *
23582249 AAAACTTAC
1 ATAACTTAT
*
23582258 AAAACTTAT
1 ATAACTTAT
*
23582267 ATAACTTAG
1 ATAACTTAT
*
23582276 ATAACTTAG
1 ATAACTTAT
*
23582285 ATAA-ATAT
1 ATAACTTAT
* *
23582293 ATAACTAAC
1 ATAACTTAT
*
23582302 ATAACTTAC
1 ATAACTTAT
23582311 ATAACTTAT
1 ATAACTTAT
*
23582320 ATAACTTAG
1 ATAACTTAT
*
23582329 ATAA-ATAT
1 ATAACTTAT
23582337 ATAACTTAT
1 ATAACTTAT
23582346 ATAACTTAT
1 ATAACTTAT
*
23582355 ATAACTTAC
1 ATAACTTAT
*
23582364 AGAACTTAT
1 ATAACTTAT
*
23582373 ATAACTGAT
1 ATAACTTAT
23582382 ATAACTT-T
1 ATAACTTAT
*
23582390 GATAA-ATAT
1 -ATAACTTAT
*
23582399 ATAACTTAC
1 ATAACTTAT
*
23582408 ATAACTTAC
1 ATAACTTAT
23582417 ATAACTTAT
1 ATAACTTAT
*
23582426 ATAACTTAG
1 ATAACTTAT
*
23582435 ATAA-ATAT
1 ATAACTTAT
*
23582443 ATAACTTAC
1 ATAACTTAT
*
23582452 ATAA-ATAT
1 ATAACTTAT
* *
23582460 ATATCATAT
1 ATAACTTAT
*
23582469 CATAACTTAC
1 -ATAACTTAT
*
23582479 ATAACTTAC
1 ATAACTTAT
23582488 ATAA
1 ATAA
23582492 TACTTAAATA
Statistics
Matches: 199, Mismatches: 36, Indels: 16
0.79 0.14 0.06
Matches are distributed among these distances:
8 29 0.15
9 164 0.82
10 6 0.03
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.35
Consensus pattern (9 bp):
ATAACTTAT
Found at i:23582308 original size:44 final size:44
Alignment explanation
Indices: 23582251--23582491 Score: 245
Period size: 44 Copynumber: 5.5 Consensus size: 44
23582241 TAACTTACAA
* *
23582251 AACTTACAAAACTTATATAACTTAGATAACTTAGATAAATATAT
1 AACTTACATAACTTATATAACTTACATAACTTAGATAAATATAT
* * *
23582295 AACTAACATAACTTACATAACTTATATAACTTAGATAAATATAT
1 AACTTACATAACTTATATAACTTACATAACTTAGATAAATATAT
* * * *
23582339 AACTTATATAACTTATATAACTTACAGAACTTATATAACTGATAT
1 AACTTACATAACTTATATAACTTACATAACTTAGATAAAT-ATAT
** * * *
23582384 AACTTTGATAA-ATATATAACTTACATAACTTACATAACTTATAT
1 AACTTACATAACTTATATAACTTACATAACTTAGATAA-ATATAT
* * * * *
23582428 AACTTAGATAA-ATATATAACTTACATAA-ATATATATCATATCAT
1 AACTTACATAACTTATATAACTTACATAACTTAGATA-AATAT-AT
*
23582472 AACTTACATAACTTACATAA
1 AACTTACATAACTTATATAA
23582492 TACTTAAATA
Statistics
Matches: 167, Mismatches: 25, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
43 8 0.05
44 139 0.83
45 20 0.12
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.36
Consensus pattern (44 bp):
AACTTACATAACTTATATAACTTACATAACTTAGATAAATATAT
Found at i:23582308 original size:53 final size:53
Alignment explanation
Indices: 23582240--23582438 Score: 283
Period size: 53 Copynumber: 3.8 Consensus size: 53
23582230 AATATTTAAC
* *
23582240 ATAACTTACAAAACTTACAAAACTTATATAACTTAGATAACTTAGATAAATAT
1 ATAACTTACATAACTTACATAACTTATATAACTTAGATAACTTAGATAAATAT
* * * *
23582293 ATAACTAACATAACTTACATAACTTATATAACTTAGATAA-ATATATAACTTAT
1 ATAACTTACATAACTTACATAACTTATATAACTTAGATAACTTAGATAA-ATAT
* * * * *
23582346 ATAACTTATATAACTTACAGAACTTATATAACTGATATAACTTTGATAAATAT
1 ATAACTTACATAACTTACATAACTTATATAACTTAGATAACTTAGATAAATAT
23582399 ATAACTTACATAACTTACATAACTTATATAACTTAGATAA
1 ATAACTTACATAACTTACATAACTTATATAACTTAGATAA
23582439 ATATATAACT
Statistics
Matches: 125, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
52 6 0.05
53 114 0.91
54 5 0.04
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (53 bp):
ATAACTTACATAACTTACATAACTTATATAACTTAGATAACTTAGATAAATAT
Found at i:23584375 original size:12 final size:12
Alignment explanation
Indices: 23584358--23584382 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23584348 AAGATCGAGG
23584358 GATGAATCTGAT
1 GATGAATCTGAT
23584370 GATGAATCTGAT
1 GATGAATCTGAT
23584382 G
1 G
23584383 GAGAGGATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:23588110 original size:21 final size:21
Alignment explanation
Indices: 23588084--23588139 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
23588074 GGGAGGCAGT
*
23588084 GGCAGCGACAGCAGCGAAGGA
1 GGCAGCGGCAGCAGCGAAGGA
* *
23588105 GGCAGCGGCAACAGCGAGGGA
1 GGCAGCGGCAGCAGCGAAGGA
*
23588126 GGCAGAGGCAGCAG
1 GGCAGCGGCAGCAG
23588140 TGATGGCAGC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.23, G:0.46, T:0.00
Consensus pattern (21 bp):
GGCAGCGGCAGCAGCGAAGGA
Found at i:23588436 original size:31 final size:31
Alignment explanation
Indices: 23588390--23588456 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
23588380 TGGTTGTATT
* *
23588390 TTTTATGCTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATACTAAATTTGCTGTATTTGGCTGCA
* * * *
23588421 TTTTATACTATATTTGTTGTATTTGGTTGGA
1 TTTTATACTAAATTTGCTGTATTTGGCTGCA
23588452 TTTTA
1 TTTTA
23588457 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.07, G:0.18, T:0.57
Consensus pattern (31 bp):
TTTTATACTAAATTTGCTGTATTTGGCTGCA
Found at i:23588581 original size:44 final size:44
Alignment explanation
Indices: 23588526--23588612 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 44
23588516 GTTTGTGGGA
*
23588526 AAAGCGTCGCTAAAAGCCATGACTTTTAGCGGCGCTTTTTTAAC
1 AAAGCGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTTTTAAC
* * *
23588570 AAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTTTTTAA
1 AAAGCGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTTTTAA
23588613 ATAAACGTCA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (44 bp):
AAAGCGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTTTTAAC
Found at i:23593440 original size:2 final size:2
Alignment explanation
Indices: 23593433--23593470 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
23593423 ATTATTGTCT
23593433 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23593471 AAAGCAACGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:23594140 original size:2 final size:2
Alignment explanation
Indices: 23594133--23594166 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
23594123 CATGGATAAA
23594133 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23594167 TTGACGCAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23594345 original size:31 final size:29
Alignment explanation
Indices: 23594279--23594347 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 29
23594269 ATAAAATATG
*
23594279 TTTTAGTCCCTCTATTGTTAAAAGGAACA
1 TTTTAGTCCCTATATTGTTAAAAGGAACA
23594308 TTTTAGTCCCTATA-TGTTTGAAAAGCTGAA-A
1 TTTTAGTCCCTATATTG-TT-AAAAG--GAACA
23594339 TTTTAGTCC
1 TTTTAGTCC
23594348 TTACAAATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
28 2 0.06
29 15 0.43
30 5 0.14
31 10 0.29
32 3 0.09
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (29 bp):
TTTTAGTCCCTATATTGTTAAAAGGAACA
Found at i:23595467 original size:2 final size:2
Alignment explanation
Indices: 23595460--23595494 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
23595450 CTCCATTATT
23595460 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
23595495 GGATGAATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:23597496 original size:30 final size:30
Alignment explanation
Indices: 23597460--23597537 Score: 122
Period size: 30 Copynumber: 2.6 Consensus size: 30
23597450 GCACATGGGT
*
23597460 GTGTGGCCAGCCCGTGTGTCTCACACGGAC
1 GTGTGGCCAGCCCGTGTGGCTCACACGGAC
*
23597490 GTGTGGCCAGCCCGTGTGGCTCACACGGGC
1 GTGTGGCCAGCCCGTGTGGCTCACACGGAC
23597520 GTGT-GCTCAGCCCGTGTG
1 GTGTGGC-CAGCCCGTGTG
23597538 AGAATGCCTA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
29 2 0.04
30 43 0.96
ACGTcount: A:0.10, C:0.32, G:0.37, T:0.21
Consensus pattern (30 bp):
GTGTGGCCAGCCCGTGTGGCTCACACGGAC
Found at i:23602334 original size:123 final size:123
Alignment explanation
Indices: 23602115--23602365 Score: 432
Period size: 123 Copynumber: 2.0 Consensus size: 123
23602105 ATTGTGTGAG
*
23602115 GTTTTTCTATCATCATCCTGGGACACGCAGAGAACCCTATTGGGTAATCACCATCTTTTAGTTCC
1 GTTTTCCTATCATCATCCTGGGACACGCAGAGAACCCTATTGGGTAATCACCATCTTTTAGTTCC
* ** *
23602180 CTTTGAAAGGGTGCCATGGCCATAGGCTTTTCCTCCAGAGATTCAAAT-TAGAGTTCGT
66 CTTTGAAAGAGCACCATGGCCATAGGCTTTTCCTCCAGAGATTC-AATCCAGAGTTCGT
23602238 GTTTTCCTATCATCATCCTGGGACACGCAGAGAACCCTATTGGGTAATCACCATCTTTTAGTTCC
1 GTTTTCCTATCATCATCCTGGGACACGCAGAGAACCCTATTGGGTAATCACCATCTTTTAGTTCC
*
23602303 CTTTGAAAGAGCACCATGGCCATAGGCTTTTCCTCTAGAGATTCAATCCAGAGTTCGT
66 CTTTGAAAGAGCACCATGGCCATAGGCTTTTCCTCCAGAGATTCAATCCAGAGTTCGT
23602361 GTTTT
1 GTTTT
23602366 TAGTCCCGAC
Statistics
Matches: 121, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
122 3 0.02
123 118 0.98
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (123 bp):
GTTTTCCTATCATCATCCTGGGACACGCAGAGAACCCTATTGGGTAATCACCATCTTTTAGTTCC
CTTTGAAAGAGCACCATGGCCATAGGCTTTTCCTCCAGAGATTCAATCCAGAGTTCGT
Found at i:23603036 original size:10 final size:10
Alignment explanation
Indices: 23603013--23603072 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
23603003 TAAATTTAGG
23603013 ATTTAT-TTT
1 ATTTATCTTT
23603022 CATTTATCTTT
1 -ATTTATCTTT
*
23603033 ATTTGTCTTT
1 ATTTATCTTT
*
23603043 AATTATCTTT
1 ATTTATCTTT
23603053 ATTTAT-TTGT
1 ATTTATCTT-T
23603063 ATTTATCTTT
1 ATTTATCTTT
23603073 TAGAATTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 2 0.05
10 36 0.84
11 5 0.12
ACGTcount: A:0.20, C:0.08, G:0.03, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:23603826 original size:17 final size:18
Alignment explanation
Indices: 23603794--23603827 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
23603784 TATTCTTCAT
23603794 TTTAATTTTCGCAATTTA
1 TTTAATTTTCGCAATTTA
23603812 TTTAATTTT-GCAATTT
1 TTTAATTTTCGCAATTT
23603828 CAATTCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.09, G:0.06, T:0.59
Consensus pattern (18 bp):
TTTAATTTTCGCAATTTA
Found at i:23606696 original size:5 final size:5
Alignment explanation
Indices: 23606674--23606736 Score: 62
Period size: 5 Copynumber: 13.0 Consensus size: 5
23606664 AGGCAACTCA
* *
23606674 ATTTT TTTTT A-TTA ATTTT ATTTT A-TTT ATTTT ACTATTT A--TT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A-T-TTT ATTTT ATTTT
23606722 ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT
23606737 GGATGTTGAT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
3 3 0.06
4 7 0.15
5 33 0.69
6 1 0.02
7 4 0.08
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:23606706 original size:24 final size:25
Alignment explanation
Indices: 23606674--23606731 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
23606664 AGGCAACTCA
* *
23606674 ATTTTTTTTTATTAATT-TTATTTT
1 ATTTATTTTTACTAATTATTATTTT
*
23606698 ATTTA-TTTTACTATTTATTATTTT
1 ATTTATTTTTACTAATTATTATTTT
23606722 ATTTTATTTT
1 A-TTTATTTT
23606732 ATTTTGGATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 9 0.32
24 12 0.43
25 4 0.14
26 3 0.11
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (25 bp):
ATTTATTTTTACTAATTATTATTTT
Found at i:23606733 original size:15 final size:14
Alignment explanation
Indices: 23606674--23606736 Score: 74
Period size: 14 Copynumber: 4.4 Consensus size: 14
23606664 AGGCAACTCA
* *
23606674 ATTTTTTTTTATTA
1 ATTTTATTTTATTT
23606688 ATTTTATTTTATTT
1 ATTTTATTTTATTT
23606702 ATTTTACTATTTA-TT
1 ATTTTA-T-TTTATTT
23606717 ATTTTATTTTATTTT
1 ATTTTATTTTA-TTT
23606732 ATTTT
1 ATTTT
23606737 GGATGTTGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
13 4 0.09
14 19 0.44
15 16 0.37
16 4 0.09
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (14 bp):
ATTTTATTTTATTT
Found at i:23607647 original size:96 final size:97
Alignment explanation
Indices: 23607480--23607665 Score: 304
Period size: 96 Copynumber: 1.9 Consensus size: 97
23607470 AATTTTTAAA
23607480 AATGTGTTAGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGTT
1 AATGTGTTAGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGTT
* *
23607545 CGATATATTCTTAAG-AAAAATAAAAATTAGG
66 CAATATATTCCTAAGTAAAAATAAAAATTAGG
* * *
23607576 AATGTGTTGGGCTGAGTAACCGGGGTG-GGATGCTTGGCTGTCATCTCTCTTCGCGTCAAAATGT
1 AATGTGTTAGGCTGAGTAACCGGGGTGAGG-TGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGT
23607640 TCAATATATTCCTAAGTAAAAATAAA
65 TCAATATATTCCTAAGTAAAAATAAA
23607666 TAAATAAAAT
Statistics
Matches: 83, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
95 2 0.02
96 72 0.87
97 9 0.11
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (97 bp):
AATGTGTTAGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGTT
CAATATATTCCTAAGTAAAAATAAAAATTAGG
Found at i:23608317 original size:10 final size:9
Alignment explanation
Indices: 23608302--23608357 Score: 58
Period size: 10 Copynumber: 5.7 Consensus size: 9
23608292 TAAATTTAGG
23608302 ATTTATTTT
1 ATTTATTTT
23608311 CATTTATCTTT
1 -ATTTAT-TTT
23608322 ATTTATCTTT
1 ATTTAT-TTT
*
23608332 AATTATTTGT
1 ATTTATTT-T
23608342 ATTTATTTGT
1 ATTTATTT-T
23608352 ATTTAT
1 ATTTAT
23608358 CTTTTAGAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
9 2 0.05
10 37 0.88
11 3 0.07
ACGTcount: A:0.23, C:0.05, G:0.04, T:0.68
Consensus pattern (9 bp):
ATTTATTTT
Found at i:23608346 original size:30 final size:30
Alignment explanation
Indices: 23608304--23608361 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 30
23608294 AATTTAGGAT
23608304 TTATTTTCATTTATCTT-TATTTATCTTTAA
1 TTATTTTCATTTAT-TTGTATTTATCTTTAA
23608334 TTATTTGT-ATTTATTTGTATTTATCTTT
1 TTATTT-TCATTTATTTGTATTTATCTTT
23608362 TAGAATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 2 0.08
30 23 0.88
31 1 0.04
ACGTcount: A:0.21, C:0.07, G:0.03, T:0.69
Consensus pattern (30 bp):
TTATTTTCATTTATTTGTATTTATCTTTAA
Found at i:23611823 original size:27 final size:27
Alignment explanation
Indices: 23611782--23611833 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
23611772 AGATCCCCTA
23611782 TATATGATAAAATGACTATTTTGCCTT
1 TATATGATAAAATGACTATTTTGCCTT
* *
23611809 TATATGGTAAGATGACTATTTTGCC
1 TATATGATAAAATGACTATTTTGCC
23611834 CCTATGTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (27 bp):
TATATGATAAAATGACTATTTTGCCTT
Found at i:23615464 original size:2 final size:2
Alignment explanation
Indices: 23615453--23615482 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
23615443 TATGAATTAA
*
23615453 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23615483 GCATTTGCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:23616166 original size:12 final size:13
Alignment explanation
Indices: 23616149--23616177 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
23616139 TACTCAACCT
23616149 TTTATTTATTTA-
1 TTTATTTATTTAC
23616161 TTTATTTATTTAC
1 TTTATTTATTTAC
23616174 TTTA
1 TTTA
23616178 ATTGTTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTATTTATTTAC
Found at i:23622020 original size:11 final size:11
Alignment explanation
Indices: 23622006--23622030 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23621996 ACAATATCAA
23622006 CAATATAATAG
1 CAATATAATAG
23622017 CAATATAATAG
1 CAATATAATAG
23622028 CAA
1 CAA
23622031 AATGGTAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (11 bp):
CAATATAATAG
Found at i:23625747 original size:3 final size:3
Alignment explanation
Indices: 23625739--23625869 Score: 83
Period size: 3 Copynumber: 43.3 Consensus size: 3
23625729 AACCTTCACA
* * * *
23625739 TAT TAT TAT TAT TGT TAT TAT TAT TAT TTT TAC TAT CTAA TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
* ** *
23625784 TAT TAT ATAT CAT TA- TATT TAT TAT TAT GCT TAT TAT T-T TCAC TAT
1 TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT T-AT TAT
* *
23625830 TTT TACT TAT TAT T-T TAT T-T TAG TAT TAT TAT GTAT TAT T
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
23625870 TGGTATACAT
Statistics
Matches: 98, Mismatches: 19, Indels: 22
0.71 0.14 0.16
Matches are distributed among these distances:
2 10 0.10
3 74 0.76
4 14 0.14
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:23626417 original size:18 final size:18
Alignment explanation
Indices: 23626396--23626446 Score: 56
Period size: 17 Copynumber: 3.0 Consensus size: 18
23626386 ATTCGGATCC
23626396 CAAAAATTTTCTCGTTTT
1 CAAAAATTTTCTCGTTTT
23626414 C-AAAATTTTCGT-GTTTT
1 CAAAAATTTTC-TCGTTTT
*
23626431 -AAAAA-ATTCTCGTTTT
1 CAAAAATTTTCTCGTTTT
23626447 TCAATCGGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
15 1 0.03
16 8 0.28
17 18 0.62
18 2 0.07
ACGTcount: A:0.29, C:0.14, G:0.08, T:0.49
Consensus pattern (18 bp):
CAAAAATTTTCTCGTTTT
Found at i:23636657 original size:46 final size:46
Alignment explanation
Indices: 23636607--23636780 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 46
23636597 TTTGGGCATC
*
23636607 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGAT
* * *** * * * *
23636653 CGAACTCGTTGAGTTAAGTTCGAGTTCGAGAGATGTA-AC-TAGGCAT
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAATG-AT
* * **
23636699 CCAAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCC
1 CGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGAT
*
23636746 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23636781 GCGGGTTACA
Statistics
Matches: 97, Mismatches: 26, Indels: 10
0.73 0.20 0.08
Matches are distributed among these distances:
45 2 0.02
46 65 0.67
47 28 0.29
48 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGAT
Found at i:23636760 original size:93 final size:93
Alignment explanation
Indices: 23636601--23636772 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
23636591 AGGATGTTTG
**
23636601 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
*
23636666 TTAAGTTCGAGTTCGAGAGATGTAACTA
66 TTAAGTCCGAGTTCGAGAGATGTAACTA
* *
23636694 GGCATCC-AAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGA
1 GGCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGA
*
23636758 GTTGAGTCCGAGTTC
65 GTTAAGTCCGAGTTC
23636773 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
TTAAGTCCGAGTTCGAGAGATGTAACTA
Found at i:23643912 original size:73 final size:72
Alignment explanation
Indices: 23643782--23644236 Score: 581
Period size: 73 Copynumber: 6.1 Consensus size: 72
23643772 GGTATTTTGA
*
23643782 TGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTT
1 TGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
23643847 CAATTTC
66 CAATTTC
* * **
23643854 TGTTTGTCAAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCCCAGGGCATACTGAGGTATTT
1 TGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
23643919 TCAATTTC
65 TCAATTTC
*
23643927 TGATTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGT
1 TG-TTTT----CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGT
23643992 ATTTTCAATTTC
61 ATTTTCAATTTC
* * * * * *
23644004 TGGTTTTCAAAAAAATCAACTTACATTGTGAGAGGTGAGTTGGGCCTCAGGACACGCTGAGGTAA
1 T-GTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAT
23644069 TTTCAATTTC
63 TTTCAATTTC
* *
23644079 TGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGATTTGAGCCTCAGGGCACGCTGAGGTATTT
1 TGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
*
23644144 TCAA-TTA
65 TCAATTTC
* * *
23644151 TGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC-GGGTTACATGCCGAGGTA
1 TG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG---CACGCTGAGGTA
**
23644215 TTTTCAAAATC
62 TTTTCAATTTC
23644226 TGTTTTGCAAA
1 TGTTTT-CAAA
23644237 TTCTATTTTC
Statistics
Matches: 334, Mismatches: 33, Indels: 29
0.84 0.08 0.07
Matches are distributed among these distances:
71 3 0.01
72 46 0.14
73 121 0.36
74 28 0.08
75 69 0.21
77 66 0.20
78 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (72 bp):
TGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
CAATTTC
Found at i:23644091 original size:150 final size:147
Alignment explanation
Indices: 23643789--23644196 Score: 572
Period size: 150 Copynumber: 2.8 Consensus size: 147
23643779 TGATGTTTTC
*
23643789 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
* * * * *
23643854 T-GTTTGTCAAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCCCAGGGCATACTGAGGTATT
66 TGGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAAT
23643918 TTCAATTTCTGATTTTAAAAA
130 TTCAATTTCTGATTTT---AA
23643939 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
* * * * *
23644004 TGGTTTTCAAAAAAATCAACTTACATTGTGAGAGGTGAGTTGGGCCTCAGGACACGCTGAGGTAA
66 TGGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAA
*
23644069 TTTCAATTTCTG-TTTGT-C
129 TTTCAATTTCTGATTT-TAA
* * *
23644087 AAAAATCAACTCATATTGCAAGAGGTGATTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA-TTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
* *
23644151 TGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC
66 TGGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
23644197 GGGTTACATG
Statistics
Matches: 233, Mismatches: 21, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
145 33 0.14
147 9 0.04
148 59 0.25
150 67 0.29
151 7 0.03
152 58 0.25
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (147 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
TGGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATT
TCAATTTCTGATTTTAA
Found at i:23644305 original size:88 final size:88
Alignment explanation
Indices: 23644154--23644387 Score: 249
Period size: 88 Copynumber: 2.7 Consensus size: 88
23644144 TCAATTATGC
* * * * * * *
23644154 TTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTTACATGCCGAGGTATTTT
1 TTTTCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGCTCACATGCCGAGCTATTTT
23644219 CAAAATCTGTTTTGCAAAT-TCTA-
66 CAAAATCTGTTTT--AAATGTCTAG
* * * *
23644242 TTTTCAAAAATCAACTCATATTGCAAGAAGCGAGTTGAGCCTTAGCTCACTTGCTGAGCTATTTT
1 TTTTCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGCTCACATGCCGAGCTATTTT
** *
23644307 CAATTTCTGTTTTTAATGTCTAG
66 CAAAATCTGTTTTAAATGTCTAG
* * * * *
23644330 TTTT-AAAGAGTCAATTCATATTGCAAGAAATGAGTTGAGCCTCGGGTCACATGCCGAG
1 TTTTCAAA-AATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGCTCACATGCCGAG
23644388 GATAAAGATT
Statistics
Matches: 120, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
86 3 0.03
87 7 0.06
88 110 0.92
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (88 bp):
TTTTCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGCTCACATGCCGAGCTATTTT
CAAAATCTGTTTTAAATGTCTAG
Found at i:23644539 original size:21 final size:21
Alignment explanation
Indices: 23644492--23644545 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
23644482 TAGCAGAGCT
* * **
23644492 TTGAAGTTACAATGGAGCTGA
1 TTGAAGTTGCAGTGGAGCACA
*
23644513 TCGAAGTTGCAGTGGAGCACA
1 TTGAAGTTGCAGTGGAGCACA
23644534 TTGAAGTTGCAG
1 TTGAAGTTGCAG
23644546 ATCCTATCCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (21 bp):
TTGAAGTTGCAGTGGAGCACA
Found at i:23646199 original size:26 final size:26
Alignment explanation
Indices: 23646134--23646201 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 26
23646124 ATTATATTTC
* *
23646134 TTTTATATTTATTTATCTATTCCTTT
1 TTTTACATTTATTTATCTATTACTTT
**
23646160 TTTTACATACATTTAT-T-TTACTTT
1 TTTTACATTTATTTATCTATTACTTT
23646184 GTTTTACCATTTATTTAT
1 -TTTTA-CATTTATTTAT
23646202 ATCCCTTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 6 0.18
25 6 0.18
26 22 0.65
ACGTcount: A:0.22, C:0.12, G:0.01, T:0.65
Consensus pattern (26 bp):
TTTTACATTTATTTATCTATTACTTT
Found at i:23646271 original size:3 final size:3
Alignment explanation
Indices: 23646263--23646316 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
23646253 AACCTTCACA
* * * *
23646263 TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TTT TAC TAT CTAA TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
23646308 TAT TAT TAT
1 TAT TAT TAT
23646317 ACTTATTTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
2 2 0.05
3 38 0.90
4 2 0.05
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:23646421 original size:18 final size:17
Alignment explanation
Indices: 23646374--23646427 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
23646364 TTATTGTACG
*
23646374 TATATA-TATACTTTTA
1 TATATAGTATATTTTTA
23646390 TATATAGTATTATTTTTA
1 TATATAGTA-TATTTTTA
*
23646408 TATATCATTATATTTATTA
1 TATAT-AGTATATTT-TTA
23646427 T
1 T
23646428 TATGCTTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 6 0.19
17 2 0.06
18 17 0.53
19 7 0.22
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (17 bp):
TATATAGTATATTTTTA
Found at i:23647033 original size:18 final size:18
Alignment explanation
Indices: 23647012--23647066 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 18
23647002 ATTCGGATCC
*
23647012 CAAAAATTTTTGTATTTT
1 CAAAAATTTTCGTATTTT
*
23647030 C-AAAATTTTCGTGTTTT
1 CAAAAATTTTCGTATTTT
* *
23647047 AAAAAATTCTCGT-TTTT
1 CAAAAATTTTCGTATTTT
23647064 CAA
1 CAA
23647067 TCCGATCACG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
17 20 0.65
18 11 0.35
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.49
Consensus pattern (18 bp):
CAAAAATTTTCGTATTTT
Found at i:23647560 original size:38 final size:39
Alignment explanation
Indices: 23647443--23647591 Score: 120
Period size: 39 Copynumber: 3.8 Consensus size: 39
23647433 TTGTACAGAT
* * * * ** *
23647443 TATAACGAGATCTAGCCTTTGTTGCAGACCCTCGGGTAA
1 TATAATGAGATCTAACCTTGGTTGCAAATTCTCAGGTAA
* * * * * * * *
23647482 TGTAATGAGACCTATCATTTGTTGTAGATTCTCGGGTAA
1 TATAATGAGATCTAACCTTGGTTGCAAATTCTCAGGTAA
*
23647521 TATAATGAGGTCTAACC-TGGTTGCAAATTCTCAGGTAA
1 TATAATGAGATCTAACCTTGGTTGCAAATTCTCAGGTAA
* * *
23647559 TATAATGAGATCTACCCTTGTTTGCATATTCTC
1 TATAATGAGATCTAACCTTGGTTGCAAATTCTC
23647592 GAGTTATATG
Statistics
Matches: 88, Mismatches: 21, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
38 32 0.36
39 56 0.64
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (39 bp):
TATAATGAGATCTAACCTTGGTTGCAAATTCTCAGGTAA
Found at i:23649124 original size:15 final size:15
Alignment explanation
Indices: 23649106--23649140 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
23649096 TGTAGTATTT
* *
23649106 TTTTTGTAAATTTTA
1 TTTTTATAAATTATA
23649121 TTTTTATAAATTATA
1 TTTTTATAAATTATA
23649136 TTTTT
1 TTTTT
23649141 TTCTAGATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTTTATAAATTATA
Found at i:23649155 original size:20 final size:20
Alignment explanation
Indices: 23649132--23649197 Score: 78
Period size: 20 Copynumber: 3.2 Consensus size: 20
23649122 TTTTATAAAT
**
23649132 TATATTTTTTTCTAGATTTA
1 TATATTTTTTTCTATTTTTA
**
23649152 TATATTTTTCTTGAATTTTTA
1 TATATTTTT-TTCTATTTTTA
*
23649173 TATATTTATTTCTATTTTTA
1 TATATTTTTTTCTATTTTTA
23649193 TATAT
1 TATAT
23649198 ATATTTAATG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 23 0.61
21 15 0.39
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (20 bp):
TATATTTTTTTCTATTTTTA
Found at i:23649172 original size:21 final size:20
Alignment explanation
Indices: 23649148--23649215 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
23649138 TTTTTCTAGA
* *
23649148 TTTATATATTTTTCTTGAATT
1 TTTATATATTTAT-TTCAATT
*
23649169 TTTATATATTTATTTCTATT
1 TTTATATATTTATTTCAATT
* *
23649189 TTTATATATATATTT-AATG
1 TTTATATATTTATTTCAATT
23649208 TTTATATA
1 TTTATATA
23649216 CATTTAATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 10 0.24
20 19 0.46
21 12 0.29
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (20 bp):
TTTATATATTTATTTCAATT
Found at i:23649212 original size:39 final size:41
Alignment explanation
Indices: 23649132--23649215 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 41
23649122 TTTTATAAAT
* * * *
23649132 TATATTTTTTTCTAGATTTATATATTTTTCTTGAATTTTTA
1 TATATTTATTTCTAGATTTATATATATATCTTGAATGTTTA
**
23649173 TATATTTATTTCTATTTTTATATATATAT-TT-AATGTTTA
1 TATATTTATTTCTAGATTTATATATATATCTTGAATGTTTA
23649212 TATA
1 TATA
23649216 CATTTAATAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 11 0.30
40 2 0.05
41 24 0.65
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.64
Consensus pattern (41 bp):
TATATTTATTTCTAGATTTATATATATATCTTGAATGTTTA
Found at i:23654250 original size:2 final size:2
Alignment explanation
Indices: 23654243--23654283 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
23654233 TTACATTTTA
23654243 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23654284 ATGAGCTTGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:23655809 original size:20 final size:20
Alignment explanation
Indices: 23655784--23655823 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
23655774 ATGATCAATA
23655784 TATGCATGACAAGTACATGT
1 TATGCATGACAAGTACATGT
23655804 TATGCATGACAAGTACATGT
1 TATGCATGACAAGTACATGT
23655824 GACATTATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (20 bp):
TATGCATGACAAGTACATGT
Found at i:23657595 original size:57 final size:58
Alignment explanation
Indices: 23657533--23657650 Score: 166
Period size: 57 Copynumber: 2.1 Consensus size: 58
23657523 TCTTTTTAGG
* * *
23657533 TCATTTTCATTTTGGAGAAAACCACATTCATTTCCGAATGATTC-CATTTCTCCATTT
1 TCATTTTCATTTTAGAGAAAACCACACTCATTTCCAAATGATTCTCATTTCTCCATTT
* * * *
23657590 TCATTTTCATTTTAGAGAAAACTATACTCATTTTCAAATGTTTCTCATTTCTCCATTT
1 TCATTTTCATTTTAGAGAAAACCACACTCATTTCCAAATGATTCTCATTTCTCCATTT
23657648 TCA
1 TCA
23657651 CCATTTGTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 37 0.70
58 16 0.30
ACGTcount: A:0.27, C:0.21, G:0.07, T:0.45
Consensus pattern (58 bp):
TCATTTTCATTTTAGAGAAAACCACACTCATTTCCAAATGATTCTCATTTCTCCATTT
Found at i:23659607 original size:2 final size:2
Alignment explanation
Indices: 23659600--23659624 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
23659590 GAGATTAGTC
23659600 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
23659625 CATGTCATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23662709 original size:26 final size:26
Alignment explanation
Indices: 23662673--23662756 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
23662663 TGATACAAAT
*
23662673 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
23662699 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
23662725 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
23662751 TGATAA
1 TGATAA
23662757 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:23664416 original size:27 final size:27
Alignment explanation
Indices: 23664375--23664487 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
23664365 GAGGAAGCGT
*
23664375 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
23664402 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
23664429 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
23664457 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
23664483 TCTGG
1 TCTGG
23664488 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:23664480 original size:54 final size:54
Alignment explanation
Indices: 23664373--23664487 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
23664363 TGGAGGAAGC
*
23664373 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
23664427 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
23664481 GTTCTGG
1 GTTCTGG
23664488 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:23668632 original size:28 final size:28
Alignment explanation
Indices: 23668592--23668645 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
23668582 TGACTTTGTG
23668592 ACTAAATGAGTTTATAATTAATATGCTC
1 ACTAAATGAGTTTATAATTAATATGCTC
23668620 ACTAAATGAGTTTATAATTAATATGC
1 ACTAAATGAGTTTATAATTAATATGC
23668646 AAAAATCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (28 bp):
ACTAAATGAGTTTATAATTAATATGCTC
Found at i:23669056 original size:25 final size:26
Alignment explanation
Indices: 23669022--23669070 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
23669012 ACATACTTTC
23669022 TCAAAATTTTACTAG-GGTAAAATCG
1 TCAAAATTTTACTAGAGGTAAAATCG
23669047 TCAAAATTTTACTAGAGGTAAAAT
1 TCAAAATTTTACTAGAGGTAAAAT
23669071 AGGGATGAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTACTAGAGGTAAAATCG
Found at i:23672556 original size:32 final size:32
Alignment explanation
Indices: 23672520--23672581 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
23672510 ATTTTAAAAA
23672520 CAATTATCGTTTTGAAAACACGTCCTAAGTAT
1 CAATTATCGTTTTGAAAACACGTCCTAAGTAT
23672552 CAATTATCGTTTTGAAAACACGTCCTAAGT
1 CAATTATCGTTTTGAAAACACGTCCTAAGT
23672582 CTAGCCCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (32 bp):
CAATTATCGTTTTGAAAACACGTCCTAAGTAT
Found at i:23672981 original size:31 final size:31
Alignment explanation
Indices: 23672943--23673003 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
23672933 TTTCATATTT
*
23672943 CATATTTCATAACACTGGGCTGAAGCCTTTC
1 CATATTTCATAACACTGGGCCGAAGCCTTTC
**
23672974 CATATTTCATATTACTGGGCCGAAGCCTTT
1 CATATTTCATAACACTGGGCCGAAGCCTTT
23673004 ACTGTAAACG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (31 bp):
CATATTTCATAACACTGGGCCGAAGCCTTTC
Found at i:23673246 original size:24 final size:24
Alignment explanation
Indices: 23673210--23673337 Score: 206
Period size: 24 Copynumber: 5.4 Consensus size: 24
23673200 CTGGAGGCCT
*
23673210 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
23673235 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
23673259 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
23673282 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
23673306 ATCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
23673329 AGCCCTTTT
1 AGCCCTTTT
23673338 TCACTTCCTC
Statistics
Matches: 96, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
23 44 0.46
24 48 0.50
25 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:23673271 original size:23 final size:23
Alignment explanation
Indices: 23673217--23673336 Score: 195
Period size: 23 Copynumber: 5.1 Consensus size: 23
23673207 CCTAGCCTCT
*
23673217 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
23673240 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
23673264 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
23673287 TTTTGATAACTGGGGCATAATCCC
1 -TTTAATAACTGGGGCATAAGCCC
23673311 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
23673334 TTT
1 TTT
23673337 TTCACTTCCT
Statistics
Matches: 90, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
23 47 0.52
24 43 0.48
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:23673286 original size:47 final size:47
Alignment explanation
Indices: 23673217--23673337 Score: 215
Period size: 47 Copynumber: 2.6 Consensus size: 47
23673207 CCTAGCCTCT
*
23673217 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
23673264 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAATCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
23673311 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
23673338 TCACTTCCTC
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:23673411 original size:20 final size:20
Alignment explanation
Indices: 23673386--23673452 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
23673376 TTATGAGTAC
23673386 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
23673406 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
23673426 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
23673446 ACCATGT
1 ATCATGT
23673453 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:23673417 original size:11 final size:11
Alignment explanation
Indices: 23673386--23673441 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
23673376 TTATGAGTAC
23673386 ATCATGTGCAT
1 ATCATGTGCAT
*
23673397 ATCA--TACAT
1 ATCATGTGCAT
23673406 ATCATGTGCAT
1 ATCATGTGCAT
*
23673417 ATCA--TACAT
1 ATCATGTGCAT
*
23673426 GTCATGTGCAT
1 ATCATGTGCAT
23673437 ATCAT
1 ATCAT
23673442 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:23673521 original size:25 final size:25
Alignment explanation
Indices: 23673489--23673536 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23673479 ATACATAAAC
* * *
23673489 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
23673514 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
23673537 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:23676956 original size:26 final size:26
Alignment explanation
Indices: 23676884--23676959 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 26
23676874 TCTCATGTCT
23676884 ATTTTACCCCTAAC-AAAATTTTGACG
1 ATTTTACCCCT-ACTAAAATTTTGACG
* ** *
23676910 AATTTACCCCTGGTAAGATTTTGACG
1 ATTTTACCCCTACTAAAATTTTGACG
*
23676936 ATTTTGCCCCTACTAAAATTTTGA
1 ATTTTACCCCTACTAAAATTTTGA
23676960 GAAAATATAT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (26 bp):
ATTTTACCCCTACTAAAATTTTGACG
Found at i:23677342 original size:30 final size:30
Alignment explanation
Indices: 23677298--23677360 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
23677288 AATTAACAAG
*
23677298 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATATCTCTAAAATAATAACAAAATTAA
*
23677328 CAAATATCTTTAAAATAATAACAAAATTAA
1 CAAATATCTCTAAAATAATAACAAAATTAA
23677358 CAA
1 CAA
23677361 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.13, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATATCTCTAAAATAATAACAAAATTAA
Found at i:23689655 original size:26 final size:26
Alignment explanation
Indices: 23689625--23689681 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
23689615 CTTTCTGAAA
* *
23689625 GGCTCTTTGTGAGCTTCTTGATTA-AT
1 GGCTCTTTGCGAGCTTCGTG-TTATAT
*
23689651 GGCTCTTTGCGAGTTTCGTGTTATAT
1 GGCTCTTTGCGAGCTTCGTGTTATAT
23689677 GGCTC
1 GGCTC
23689682 GAGAGAGGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 3 0.11
26 24 0.89
ACGTcount: A:0.12, C:0.18, G:0.26, T:0.44
Consensus pattern (26 bp):
GGCTCTTTGCGAGCTTCGTGTTATAT
Found at i:23692752 original size:14 final size:14
Alignment explanation
Indices: 23692733--23692759 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23692723 TTACCAGCTT
23692733 TAGTGTGAACACGC
1 TAGTGTGAACACGC
23692747 TAGTGTGAACACG
1 TAGTGTGAACACG
23692760 AGTGGGGGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.22
Consensus pattern (14 bp):
TAGTGTGAACACGC
Found at i:23699458 original size:46 final size:46
Alignment explanation
Indices: 23699401--23699571 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 46
23699391 GTAACCCGCC
*
23699401 CATAAGCGAACTCGGACTCAACTCAATGAGCTCAGTCGTTCGCATT
1 CATAAGCGAACTCGGACTCAACTCAATGAGTTCAGTCGTTCGCATT
* * * *
23699447 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACA-T
1 CATAAGCGAACTCGGACTCAACTCAATGAGTTC--A-G--TCGTTCGCATT
* * * * *
23699496 C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATC
1 CATAAGCGAACTCGGACTCAACTCAATGAGTTCAGTCGTTCGCATT
* *
23699540 CATAAGTGAACTCGGACTC-ACTCAACGAGTTC
1 CATAAGCGAACTCGGACTCAACTCAATGAGTTC
23699572 GGATGCTCAA
Statistics
Matches: 99, Mismatches: 17, Indels: 19
0.73 0.13 0.14
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 2 0.02
45 14 0.14
46 42 0.42
47 25 0.25
48 3 0.03
49 3 0.03
50 2 0.02
51 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CATAAGCGAACTCGGACTCAACTCAATGAGTTCAGTCGTTCGCATT
Found at i:23699521 original size:93 final size:92
Alignment explanation
Indices: 23699407--23699577 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 92
23699397 CGCCCATAAG
* * *
23699407 CGAACTCGGACTCAACTCAATGAGCTCAGTCGTTCGCATTCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAATGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTC-ACTCA
23699472 ACGAGTTCGGATGCCTAGTTACATCTCA
65 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
23699500 CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCACTCAA
1 CGAACTCGGACTCAACTCAATGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCACTCAA
23699565 CGAGTTCGGATGC
66 CGAGTTCGGATGC
23699578 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 19 0.26
93 54 0.74
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAATGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:23701958 original size:14 final size:16
Alignment explanation
Indices: 23701933--23701964 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
23701923 ATTTTCTATG
23701933 TTTATAATGTGT-AAA
1 TTTATAATGTGTGAAA
23701948 TTTAT-ATGTGTGAAA
1 TTTATAATGTGTGAAA
23701963 TT
1 TT
23701965 GTTGTCTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (16 bp):
TTTATAATGTGTGAAA
Found at i:23708894 original size:41 final size:41
Alignment explanation
Indices: 23708849--23708930 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
23708839 TAGATGGAAA
* *
23708849 TAATTTAAATTTGTTTGTTTATTTTTTAACCTAATAAAATG
1 TAATTTAAATTTATTTGTTTATTCTTTAACCTAATAAAATG
23708890 TAATTTAAATTTATTTGTTTATTCTTTAACCTAATAAAATG
1 TAATTTAAATTTATTTGTTTATTCTTTAACCTAATAAAATG
23708931 AAGTCAACAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (41 bp):
TAATTTAAATTTATTTGTTTATTCTTTAACCTAATAAAATG
Found at i:23709981 original size:2 final size:2
Alignment explanation
Indices: 23709974--23710007 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
23709964 GAAATGCTAC
23709974 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
23710008 TTATGTTGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:23720285 original size:7 final size:7
Alignment explanation
Indices: 23720273--23720306 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
23720263 AATCCCTATG
*
23720273 CTCATTT
1 CTCATTA
23720280 CTCATTA
1 CTCATTA
23720287 CTCATTA
1 CTCATTA
23720294 CTCATTA
1 CTCATTA
23720301 CTCATT
1 CTCATT
23720307 GCACATTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.47
Consensus pattern (7 bp):
CTCATTA
Found at i:23720313 original size:21 final size:21
Alignment explanation
Indices: 23720273--23720313 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
23720263 AATCCCTATG
* *
23720273 CTCATTTCTCATTACTCATTA
1 CTCATTACTCATTACACATTA
*
23720294 CTCATTACTCATTGCACATT
1 CTCATTACTCATTACACATT
23720314 TCAAAGTAGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.02, T:0.44
Consensus pattern (21 bp):
CTCATTACTCATTACACATTA
Found at i:23722170 original size:2 final size:2
Alignment explanation
Indices: 23722163--23722188 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
23722153 ACTTTTTAAA
23722163 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
23722189 CTTAATCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23722237 original size:19 final size:19
Alignment explanation
Indices: 23722213--23722249 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
23722203 CATTTTTATT
23722213 AAATAAAAAATTAAATTAC
1 AAATAAAAAATTAAATTAC
23722232 AAATAAAAAATTAAATTA
1 AAATAAAAAATTAAATTA
23722250 AATTATCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (19 bp):
AAATAAAAAATTAAATTAC
Found at i:23728775 original size:27 final size:27
Alignment explanation
Indices: 23728727--23728885 Score: 139
Period size: 27 Copynumber: 5.9 Consensus size: 27
23728717 GCGAGGCTGC
* *
23728727 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
23728754 TAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
23728780 CAGATATATGTAGCAAAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * * *
23728807 CAGATAATCGTGGCATAGCCACTAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
23728834 CAGATATATGTGACAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
23728861 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
23728886 GACGCTTCCT
Statistics
Matches: 106, Mismatches: 18, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
26 9 0.08
27 92 0.87
28 5 0.05
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:23728820 original size:54 final size:54
Alignment explanation
Indices: 23728727--23728885 Score: 207
Period size: 54 Copynumber: 3.0 Consensus size: 54
23728717 GCGAGGCTGC
* * * *
23728727 CAGATAT-TGTGACGAAGTCACCAGATATAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGACAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAA
* * *
23728780 CAGATATATGT-AGCAAAGCCACCAGATCAGATAATCGTGGCATAGCCACTAGGA
1 CAGATATATGTGA-CAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
*
23728834 CAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CAGATATATGTGACAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
23728886 GACGCTTCCT
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
53 12 0.13
54 79 0.86
55 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGACAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
Found at i:23729291 original size:8 final size:8
Alignment explanation
Indices: 23729275--23729304 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
23729265 CTCAAAATAC
23729275 CGGCTTTT
1 CGGCTTTT
*
23729283 CGGCATTT
1 CGGCTTTT
23729291 CGGCTTTT
1 CGGCTTTT
23729299 CGGCTT
1 CGGCTT
23729305 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:23730516 original size:26 final size:26
Alignment explanation
Indices: 23730485--23730592 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
23730475 TGAAATGCCC
*
23730485 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
23730511 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
23730537 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
23730563 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
23730589 ATCA
1 ATCA
23730593 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:23731106 original size:24 final size:24
Alignment explanation
Indices: 23731064--23731115 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
23731054 AATCAAAGTC
* *
23731064 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
* *
23731088 AAATATATTATATTCATAAATACT
1 AAATATATTATACTAATAAATACT
23731112 AAAT
1 AAAT
23731116 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:23732226 original size:33 final size:33
Alignment explanation
Indices: 23732162--23732226 Score: 76
Period size: 33 Copynumber: 2.0 Consensus size: 33
23732152 AAAATAAGAA
* * * **
23732162 TGGATATGAATACCTCAACAAAGGTTTTTCTCT
1 TGGATATCAAAACATCAACAAAGGTCATTCTCT
*
23732195 TGGATATCAAAACATCAAGAAAGGTCATTCTC
1 TGGATATCAAAACATCAACAAAGGTCATTCTC
23732227 AAAGAAATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.31
Consensus pattern (33 bp):
TGGATATCAAAACATCAACAAAGGTCATTCTCT
Found at i:23734125 original size:57 final size:57
Alignment explanation
Indices: 23734037--23734152 Score: 189
Period size: 57 Copynumber: 2.0 Consensus size: 57
23734027 TACTTTTCAA
*
23734037 ATCTCTTCTAAGAAAAGTCTCAAACAATGAAATT-GATTTTTTTTCAAAGTTAAACTT
1 ATCTCTTCTAAGAAAAGTCTCAAACAATGAAATTAAATTTTTTTT-AAAGTTAAACTT
* *
23734094 ATCTCTTCTAAGAAAGGTCTCAAACAATGAAATTAAATTTTTTTTAAAGTTAAATTT
1 ATCTCTTCTAAGAAAAGTCTCAAACAATGAAATTAAATTTTTTTTAAAGTTAAACTT
23734151 AT
1 AT
23734153 GTTGTTTAGA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
57 46 0.84
58 9 0.16
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.40
Consensus pattern (57 bp):
ATCTCTTCTAAGAAAAGTCTCAAACAATGAAATTAAATTTTTTTTAAAGTTAAACTT
Found at i:23740949 original size:5 final size:5
Alignment explanation
Indices: 23740933--23740966 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
23740923 TTTATATATA
23740933 ATAAT AATAAT ATAAT ATAAT ATAAT ATAAT ATA
1 ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATA
23740967 CTTAATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:23748598 original size:5 final size:5
Alignment explanation
Indices: 23748580--23748615 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
23748570 TCTCTTTTAT
23748580 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA
23748616 CTTAATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:23750340 original size:17 final size:17
Alignment explanation
Indices: 23750318--23750350 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
23750308 GAAAAAACCA
23750318 TCCCTAAATTCACTTAC
1 TCCCTAAATTCACTTAC
23750335 TCCCTAAATTCACTTA
1 TCCCTAAATTCACTTA
23750351 TAAAGTAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.36
Consensus pattern (17 bp):
TCCCTAAATTCACTTAC
Found at i:23754346 original size:19 final size:20
Alignment explanation
Indices: 23754322--23754362 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
23754312 GAATTTAGGC
*
23754322 AAATATTGAATA-AAAATTG
1 AAATATTCAATATAAAATTG
*
23754341 AAATATTCAATATGAAATTG
1 AAATATTCAATATAAAATTG
23754361 AA
1 AA
23754363 TTATGTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (20 bp):
AAATATTCAATATAAAATTG
Found at i:23761015 original size:27 final size:27
Alignment explanation
Indices: 23760976--23761027 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
23760966 GTTTTTATAT
*
23760976 TTTTTGTATATTTAAAATTTAGAATTAC
1 TTTTTGTAAATTTAAAATTTA-AATTAC
23761004 TTTTTG-AAATTTAAAATTTAAATT
1 TTTTTGTAAATTTAAAATTTAAATT
23761028 CAATTATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 4 0.17
27 13 0.57
28 6 0.26
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (27 bp):
TTTTTGTAAATTTAAAATTTAAATTAC
Found at i:23761040 original size:27 final size:27
Alignment explanation
Indices: 23760985--23761041 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
23760975 TTTTTTGTAT
* * *
23760985 ATTTAAAATTTAGAATTACTTTTTGAA
1 ATTTAAAATTTAGAATTAATTATTAAA
23761012 ATTTAAAATTTA-AATTCAATTATTAAA
1 ATTTAAAATTTAGAATT-AATTATTAAA
23761039 ATT
1 ATT
23761042 GTTAAAATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (27 bp):
ATTTAAAATTTAGAATTAATTATTAAA
Found at i:23767098 original size:25 final size:26
Alignment explanation
Indices: 23767030--23767101 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
23767020 TTTCATCCCT
*
23767030 ATTTTACCCCTAGCAAAAATTTGACA
1 ATTTTACCCCTAGCAAAATTTTGACA
* * **
23767056 ATTTTACCTCTAGTAAAATTTTGATG
1 ATTTTACCCCTAGCAAAATTTTGACA
*
23767082 ATTTTTCCCCTAG-AAAATTT
1 ATTTTACCCCTAGCAAAATTT
23767102 CGAGAAAATA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 7 0.18
26 32 0.82
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.40
Consensus pattern (26 bp):
ATTTTACCCCTAGCAAAATTTTGACA
Found at i:23767273 original size:18 final size:18
Alignment explanation
Indices: 23767250--23767284 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23767240 CAAATGGATT
*
23767250 ATTTCCATTTTCATTTTC
1 ATTTCCATTTCCATTTTC
*
23767268 ATTTCCGTTTCCATTTT
1 ATTTCCATTTCCATTTT
23767285 TTGAAACCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.23, G:0.03, T:0.60
Consensus pattern (18 bp):
ATTTCCATTTCCATTTTC
Found at i:23780734 original size:12 final size:12
Alignment explanation
Indices: 23780719--23780748 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
23780709 AACAAAAAAA
23780719 AAAAAAAAAAGG
1 AAAAAAAAAAGG
*
23780731 AAAAAAAGAAGG
1 AAAAAAAAAAGG
23780743 AAAAAA
1 AAAAAA
23780749 TGGTAGGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAGG
Found at i:23781715 original size:23 final size:23
Alignment explanation
Indices: 23781670--23781715 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
23781660 AATTTGAATT
* *
23781670 TAAATAATAATATCTGAATTCCA
1 TAAATAATAAAATCTGAAATCCA
23781693 TAAATAA-AAAATCTGAAAATCCA
1 TAAATAATAAAATCTG-AAATCCA
23781716 AGTGAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.54, C:0.13, G:0.04, T:0.28
Consensus pattern (23 bp):
TAAATAATAAAATCTGAAATCCA
Found at i:23782851 original size:24 final size:24
Alignment explanation
Indices: 23782807--23782855 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
23782797 GTATTGTTAA
23782807 TATAATGTATTTATATGTTTTATT
1 TATAATGTATTTATATGTTTTATT
* *
23782831 TATAATTTAATTTA-ATTTTTTATT
1 TATAATGT-ATTTATATGTTTTATT
23782855 T
1 T
23782856 TATCGTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (24 bp):
TATAATGTATTTATATGTTTTATT
Found at i:23782990 original size:12 final size:12
Alignment explanation
Indices: 23782973--23782997 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23782963 TATACGTTAT
23782973 AGAATTTCTAGA
1 AGAATTTCTAGA
23782985 AGAATTTCTAGA
1 AGAATTTCTAGA
23782997 A
1 A
23782998 AGTTAACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.16, T:0.32
Consensus pattern (12 bp):
AGAATTTCTAGA
Found at i:23785054 original size:21 final size:21
Alignment explanation
Indices: 23785028--23785080 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
23785018 GATGTTTGGA
23785028 TGTCTTGAGACAAGGGGTTCT
1 TGTCTTGAGACAAGGGGTTCT
23785049 TGTCTTGAGACAAGGGGTTCT
1 TGTCTTGAGACAAGGGGTTCT
23785070 TGTCTTGAGAC
1 TGTCTTGAGAC
23785081 CTAAAGTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.19, C:0.15, G:0.32, T:0.34
Consensus pattern (21 bp):
TGTCTTGAGACAAGGGGTTCT
Found at i:23785342 original size:21 final size:20
Alignment explanation
Indices: 23785303--23785343 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
23785293 CCATCAATCT
*
23785303 AACATATCTAAACACAACCA
1 AACATATCAAAACACAACCA
*
23785323 AACATAATCAAAACATAACCA
1 AACAT-ATCAAAACACAACCA
23785344 CCAATGCATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.59, C:0.27, G:0.00, T:0.15
Consensus pattern (20 bp):
AACATATCAAAACACAACCA
Found at i:23785663 original size:5 final size:5
Alignment explanation
Indices: 23785653--23785684 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
23785643 ACATTGCTGA
23785653 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
23785685 GAACATACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:23785678 original size:9 final size:9
Alignment explanation
Indices: 23785654--23785684 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
23785644 CATTGCTGAA
23785654 AAATAAAAT
1 AAATAAAAT
23785663 AAAATAAAAT
1 -AAATAAAAT
23785673 AAATAAAAT
1 AAATAAAAT
23785682 AAA
1 AAA
23785685 GAACATACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:23790107 original size:5 final size:5
Alignment explanation
Indices: 23790097--23790128 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
23790087 AATTTACTGA
23790097 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
23790129 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:23790122 original size:9 final size:9
Alignment explanation
Indices: 23790098--23790128 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
23790088 ATTTACTGAA
23790098 AAATAAAAT
1 AAATAAAAT
23790107 AAAATAAAAT
1 -AAATAAAAT
23790117 AAATAAAAT
1 AAATAAAAT
23790126 AAA
1 AAA
23790129 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:23793975 original size:17 final size:17
Alignment explanation
Indices: 23793953--23793988 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
23793943 AATTAAATTT
* *
23793953 AATTAATTAATTTTTTC
1 AATTAAATAATTTTCTC
23793970 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
23793987 AA
1 AA
23793989 CCCAATTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:23804308 original size:18 final size:18
Alignment explanation
Indices: 23804281--23804325 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
23804271 TTAACTAGTG
23804281 GTGATATGTAAAAGAGAA
1 GTGATATGTAAAAGAGAA
* *
23804299 GTGGTATGTAAAAGAGGA
1 GTGATATGTAAAAGAGAA
23804317 GTGATATGT
1 GTGATATGT
23804326 TAAATAACAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.40, C:0.00, G:0.33, T:0.27
Consensus pattern (18 bp):
GTGATATGTAAAAGAGAA
Found at i:23808362 original size:26 final size:26
Alignment explanation
Indices: 23808326--23808435 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
23808316 CATGAAATTC
23808326 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
23808352 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
23808378 TTATCAT-AGAACATTTACCTAACCTA
1 TTATCATGA-AACATTTACCTAACCCA
* *
23808404 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
23808430 TTATCA
1 TTATCA
23808436 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
25 1 0.01
26 79 0.99
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:23810447 original size:24 final size:24
Alignment explanation
Indices: 23810410--23810456 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
23810400 ATGATGTATA
23810410 TAATATAAAAATATATAAA-ATAAT
1 TAATATAAAAATATA-AAATATAAT
* *
23810434 TAATATATATATATAAAATATAA
1 TAATATAAAAATATAAAATATAA
23810457 AATAAAGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
TAATATAAAAATATAAAATATAAT
Done.