Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 98 of 444
Found at i:23810473 original size:38 final size:38
Alignment explanation
Indices: 23810406--23810516 Score: 100
Period size: 38 Copynumber: 2.9 Consensus size: 38
23810396 CATAATGATG
* * *
23810406 TATATAATATA-AAAATATATAAAATAATTAATATATA
1 TATATAAAATATAAAATAAATAAAATAATTAATAAATA
* *
23810443 TATATAAAATATAAAATAAAGTGAAA-AATTATTAAATA
1 TATATAAAATATAAAATAAA-TAAAATAATTAATAAATA
* * * * *
23810481 TACATATAATATAAATTAAAATACAATATTTAATAA
1 TATATAAAATATAAAAT-AAATAAAATAATTAATAA
23810517 TAATGCATGG
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
37 10 0.17
38 34 0.59
39 14 0.24
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (38 bp):
TATATAAAATATAAAATAAATAAAATAATTAATAAATA
Found at i:23810681 original size:3 final size:3
Alignment explanation
Indices: 23810668--23810769 Score: 56
Period size: 3 Copynumber: 34.0 Consensus size: 3
23810658 ATATTTAAAT
* *
23810668 ATA AAA ATA ATA AT- ATAA ATA ATA AT- ATA TATA AAA ATA ATA CATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA -ATA ATA ATA ATA -ATA
* *
23810714 ATAA ATA ATA TGTA ATA ATA AT- ATAA ATA TATA AT- AGA AT- ATA A-A
1 AT-A ATA ATA -ATA ATA ATA ATA AT-A ATA -ATA ATA ATA ATA ATA ATA
23810759 ATA AT- ATA ATA
1 ATA ATA ATA ATA
23810770 TAGTAAAAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 28
0.68 0.07 0.25
Matches are distributed among these distances:
2 13 0.17
3 46 0.60
4 18 0.23
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:23810716 original size:7 final size:7
Alignment explanation
Indices: 23810673--23810771 Score: 68
Period size: 7 Copynumber: 14.9 Consensus size: 7
23810663 TAAATATAAA
23810673 AATA-AT
1 AATATAT
23810679 AATATA-
1 AATATAT
23810685 AATA-AT
1 AATATAT
23810691 AATATAT
1 AATATAT
* *
23810698 ATAAAAAT
1 A-ATATAT
*
23810706 AATACAT
1 AATATAT
*
23810713 AATAAAT
1 AATATAT
*
23810720 AATATGT
1 AATATAT
23810727 AATA-AT
1 AATATAT
23810733 AATATA-
1 AATATAT
23810739 AATATAT
1 AATATAT
*
23810746 -A-ATAG
1 AATATAT
*
23810751 AATATAA
1 AATATAT
23810758 AATAATAT
1 AAT-ATAT
23810766 AATATA
1 AATATA
23810772 GTAAAAAACA
Statistics
Matches: 73, Mismatches: 11, Indels: 17
0.72 0.11 0.17
Matches are distributed among these distances:
5 4 0.05
6 25 0.34
7 33 0.45
8 11 0.15
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (7 bp):
AATATAT
Found at i:23810767 original size:20 final size:18
Alignment explanation
Indices: 23810679--23810769 Score: 57
Period size: 16 Copynumber: 4.9 Consensus size: 18
23810669 TAAAAATAAT
23810679 AATATAAATA-ATAATA-
1 AATATAAATATATAATAG
*
23810695 TATATAAA-A-ATAATA-
1 AATATAAATATATAATAG
* *
23810710 CATAATAAATAATATGTAATAAT
1 AAT-ATAAAT-ATA--TAAT-AG
23810733 AATATAAATATATAATAG
1 AATATAAATATATAATAG
23810751 AATATAAAATAATATAATA
1 AATAT-AAAT-ATATAATA
23810770 TAGTAAAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
15 9 0.15
16 12 0.20
18 7 0.11
19 9 0.15
20 8 0.13
21 7 0.11
22 7 0.11
23 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (18 bp):
AATATAAATATATAATAG
Found at i:23810772 original size:22 final size:23
Alignment explanation
Indices: 23810675--23810775 Score: 73
Period size: 23 Copynumber: 4.1 Consensus size: 23
23810665 AATATAAAAA
*
23810675 TAATAATATAAATAATAATATATATAA
1 TAATAATA-AAAT-A-AATA-ATATAG
*
23810702 AAATAATACATAATAAATAATAT-G
1 TAATAATA-A-AATAAATAATATAG
*
23810726 TAATAATAATATAAATATATAATAG
1 TAATAATAAAATAAATA-AT-ATAG
23810751 -AAT-ATAAAATAATATAATATAG
1 TAATAATAAAATAA-ATAATATAG
23810773 TAA
1 TAA
23810776 AAAACATGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
22 11 0.18
23 15 0.24
24 15 0.24
25 5 0.08
26 4 0.06
27 9 0.15
28 3 0.05
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (23 bp):
TAATAATAAAATAAATAATATAG
Found at i:23812757 original size:87 final size:86
Alignment explanation
Indices: 23812621--23813113 Score: 257
Period size: 87 Copynumber: 5.6 Consensus size: 86
23812611 TACAGAGATT
* * * * *
23812621 CCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTGTGTCTTCGATTT
1 CCAAATCATCTTGGATCTGCTTCAGTG-AAACACCTGAAAGTCAAATCTGCTATGTCTTCGATTT
23812686 GCTCCTTGTGAACACAAGGATG
65 GCTCCTTGTGAACACAAGGATG
* * * * *
23812708 CCAAATCATCTTGGATCTGCTTCAATGAAATCACCTGAAGGTTAGATCTGCTATG-----GATCT
1 CCAAATCATCTTGGATCTGCTTCAGTGAAA-CACCTGAAAGTCAAATCTGCTATGTCTTCGATTT
* *
23812768 GCT-CTTCATCGAA-A-TAGAGATG
65 GCTCCTT-GT-GAACACAAG-GATG
* * ** *
23812790 CCAGATCTATTATCTTGGATCTACTTTGGTGTGGGAACATCC-GAAAGTCAAATCTGCTATGTCT
1 CCA-A---ATCATCTTGGATCTGC-TT-CAGT-GAAACA-CCTGAAAGTCAAATCTGCTATGTCT
** * *
23812854 TCGATTTTTTCCTTGTAAACACAAAGATG
58 TCGATTTGCTCCTTGTGAACACAAGGATG
* * * * *
23812883 CCAAATCATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGT-ATC--TGT
1 CCAAATCATCTTGGATCTGCTTCAGTGAAA-CACCTGAAAGTCAAATCTGCTATGTCTTCGAT-T
* *
23812945 T-CTAC--GTCGAA-A-TAGAGATG
64 TGCTCCTTGT-GAACACAAG-GATG
* * ** * *
23812965 CCAGATTTGTTATCTTGGATCTGCTTTGGTGTGGGAACATCC-GAAAGTCAAATCTGTTATGTCT
1 CCA-A---ATCATCTTGGATCTGC-TT-CAGT-GAAACA-CCTGAAAGTCAAATCTGCTATGTCT
* * *
23813029 TTGATTTGTTCCTTGTAAACACAAGGATG
58 TCGATTTGCTCCTTGTGAACACAAGGATG
* * * *
23813058 CCAAATCATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGT
1 CCAAATCATCTTGGATCTGCTTCAGTGAAA-CACCTGAAAGTCAAATCTGCTATGT
23813114 ATCTGTTCTC
Statistics
Matches: 294, Mismatches: 69, Indels: 86
0.65 0.15 0.19
Matches are distributed among these distances:
81 6 0.02
82 26 0.09
83 7 0.02
84 3 0.01
85 2 0.01
86 41 0.14
87 87 0.30
88 43 0.15
89 38 0.13
90 2 0.01
91 3 0.01
92 6 0.02
93 24 0.08
94 6 0.02
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (86 bp):
CCAAATCATCTTGGATCTGCTTCAGTGAAACACCTGAAAGTCAAATCTGCTATGTCTTCGATTTG
CTCCTTGTGAACACAAGGATG
Found at i:23813162 original size:175 final size:175
Alignment explanation
Indices: 23812657--23813162 Score: 832
Period size: 175 Copynumber: 2.9 Consensus size: 175
23812647 GTAAACACGT
* * * *
23812657 GAAAGCCAAATCTGCTGTGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGG
* * * * * *
23812722 ATCTGCTTCAATGAAATCACCTGAAGGTTAGATCTGCTATGGATCTGCTCTTCATCGAAATAGAG
66 ATCTGCTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGTTCTACGTCGAAATAGAG
* *
23812787 ATGCCAGATCTATTATCTTGGATCTACTTTGGTGTGGGAACATCC
131 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGGGAACATCC
* *
23812832 GAAAGTCAAATCTGCTATGTCTTCGATTTTTTCCTTGTAAACACAAAGATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGG
23812897 ATCTGCTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGTTCTACGTCGAAATAGAG
66 ATCTGCTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGTTCTACGTCGAAATAGAG
*
23812962 ATGCCAGATTTGTTATCTTGGATCTGCTTTGGTGTGGGAACATCC
131 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGGGAACATCC
* *
23813007 GAAAGTCAAATCTGTTATGTCTTTGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGG
* * *
23813072 ATCTGCTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGTTCTCCGTCAAAATGGAG
66 ATCTGCTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGTTCTACGTCGAAATAGAG
23813137 ATGCCAGATCTGTTATCTTGGATCTG
131 ATGCCAGATCTGTTATCTTGGATCTG
23813163 TTTCAGTATA
Statistics
Matches: 308, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
175 308 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (175 bp):
GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGG
ATCTGCTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGTTCTACGTCGAAATAGAG
ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGGGAACATCC
Found at i:23814752 original size:28 final size:28
Alignment explanation
Indices: 23814720--23814818 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
23814710 GCAATAAGCC
*
23814720 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
23814748 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
23814776 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
23814805 CGCACACTTAGTGC
1 CGCACACTTAGTGC
23814819 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:23821812 original size:3 final size:3
Alignment explanation
Indices: 23821799--23821878 Score: 56
Period size: 3 Copynumber: 25.0 Consensus size: 3
23821789 ATATTTAAAT
* *
23821799 ATA AAA ATA ATA ATA AAA ATA ATA AT- ATA TATAA ATA ATA CATA ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -AT-A ATA ATA -ATA AT-A
*
23821847 ATA ATA TGTA ATA ATA AT- ATAA ATA TATA ATA
1 ATA ATA -ATA ATA ATA ATA AT-A ATA -ATA ATA
23821879 GAATATAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 4 0.06
3 40 0.65
4 17 0.27
5 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:23821820 original size:18 final size:18
Alignment explanation
Indices: 23821794--23821897 Score: 67
Period size: 18 Copynumber: 5.9 Consensus size: 18
23821784 ATTTAATATT
* *
23821794 TAAATATAAAAATAATAA
1 TAAAAATAATAATAATAA
23821812 TAAAAATAATAAT-AT-A
1 TAAAAATAATAATAATAA
*
23821828 TATAAATAATACATAAT-A
1 TAAAAATAATA-ATAATAA
* *
23821846 -AATAATATGTAATAATAA
1 TAAAAATA-ATAATAATAA
* *
23821864 TATAAATATATAAT-AGAA
1 TAAAAATA-ATAATAATAA
*
23821882 TATAAATAAT-ATAATA
1 TAAAAATAATAATAATA
23821898 TAGTAAAAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
16 13 0.19
17 18 0.26
18 28 0.41
19 10 0.14
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (18 bp):
TAAAAATAATAATAATAA
Found at i:23821866 original size:40 final size:40
Alignment explanation
Indices: 23821816--23821893 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
23821806 TAATAATAAA
*
23821816 AATAATAATATATATAAATAATAC-ATAATAAATAATATGT
1 AATAATAATATAAATAAATAATACAAT-ATAAATAATATGT
* *
23821856 AATAATAATATAAATATATAATAGAATATAAATAATAT
1 AATAATAATATAAATAAATAATACAATATAAATAATAT
23821894 AATATAGTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 32 0.94
41 2 0.06
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.35
Consensus pattern (40 bp):
AATAATAATATAAATAAATAATACAATATAAATAATATGT
Found at i:23821897 original size:14 final size:14
Alignment explanation
Indices: 23821796--23821899 Score: 83
Period size: 14 Copynumber: 7.4 Consensus size: 14
23821786 TTAATATTTA
23821796 AATATAAA-AATAAT
1 AATATAAATAAT-AT
*
23821810 AATAAAAATAATAAT
1 AATATAAATAAT-AT
23821825 ATATATAAATAATA-
1 A-ATATAAATAATAT
*
23821839 CATAATAAATAATAT
1 AAT-ATAAATAATAT
*
23821854 -GTA-ATAATAATAT
1 AATATA-AATAATAT
* *
23821867 AA-ATATATAATAG
1 AATATAAATAATAT
23821880 AATATAAATAATAT
1 AATATAAATAATAT
23821894 AATATA
1 AATATA
23821900 GTAAAAAACA
Statistics
Matches: 73, Mismatches: 9, Indels: 16
0.74 0.09 0.16
Matches are distributed among these distances:
12 1 0.01
13 20 0.27
14 34 0.47
15 8 0.11
16 10 0.14
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (14 bp):
AATATAAATAATAT
Found at i:23821990 original size:18 final size:19
Alignment explanation
Indices: 23821937--23821991 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 19
23821927 AAATGAATTT
*
23821937 TATAA-AAGGAATAAAATA
1 TATAATAAGGATTAAAATA
** *
23821955 TATATATAAATATAAAAATA
1 TATA-ATAAGGATTAAAATA
23821975 -ATAATAAGGATTAAAAT
1 TATAATAAGGATTAAAAT
23821992 GGAAATCAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
18 15 0.54
19 4 0.14
20 9 0.32
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (19 bp):
TATAATAAGGATTAAAATA
Found at i:23827657 original size:20 final size:19
Alignment explanation
Indices: 23827627--23827665 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
23827617 ATACATAATT
23827627 AATGAATAATAAATAATAA
1 AATGAATAATAAATAATAA
*
23827646 AATGATATAATATATAATAA
1 AATGA-ATAATAAATAATAA
23827666 TCTTTACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (19 bp):
AATGAATAATAAATAATAA
Found at i:23827678 original size:18 final size:19
Alignment explanation
Indices: 23827655--23827690 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23827645 AAATGATATA
23827655 ATATAT-AATAATCTTTAC
1 ATATATAAATAATCTTTAC
*
23827673 ATATATAAATAATGTTTA
1 ATATATAAATAATCTTTA
23827691 TAGTAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (19 bp):
ATATATAAATAATCTTTAC
Found at i:23827716 original size:13 final size:13
Alignment explanation
Indices: 23827698--23827726 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
23827688 TTATAGTAAA
23827698 AAATAAATTATAT
1 AAATAAATTATAT
23827711 AAATAAATTATAT
1 AAATAAATTATAT
23827724 AAA
1 AAA
23827727 AATATTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
AAATAAATTATAT
Found at i:23827729 original size:15 final size:15
Alignment explanation
Indices: 23827696--23827730 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
23827686 GTTTATAGTA
23827696 AAAAATAAATTATAT
1 AAAAATAAATTATAT
23827711 --AAATAAATTATAT
1 AAAAATAAATTATAT
23827724 AAAAATA
1 AAAAATA
23827731 TTTAAAAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
13 13 0.72
15 5 0.28
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAAATAAATTATAT
Found at i:23830535 original size:21 final size:21
Alignment explanation
Indices: 23830511--23830552 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
23830501 TCAAGACTAG
23830511 GTTATAGATATAATACATACC
1 GTTATAGATATAATACATACC
23830532 GTTATAGATATAATACATACC
1 GTTATAGATATAATACATACC
23830553 TGTAATTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (21 bp):
GTTATAGATATAATACATACC
Found at i:23831579 original size:12 final size:12
Alignment explanation
Indices: 23831564--23831588 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23831554 ATCTTGATGG
23831564 AAATCTGCTTCA
1 AAATCTGCTTCA
23831576 AAATCTGCTTCA
1 AAATCTGCTTCA
23831588 A
1 A
23831589 TGGTTCTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (12 bp):
AAATCTGCTTCA
Found at i:23835307 original size:36 final size:36
Alignment explanation
Indices: 23835254--23835336 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 36
23835244 CCGTGTGGGT
* *
23835254 AGACCGTGTGCACCACAC-GACCATGTGAAATCTTAC
1 AGACCGTGTGGACCACACAG-CCATGTGAAACCTTAC
* * **
23835290 AGCCCGTGTGGAGCACACAGCTGTGTGAAACCTTAC
1 AGACCGTGTGGACCACACAGCCATGTGAAACCTTAC
23835326 AGACCGTGTGG
1 AGACCGTGTGG
23835337 TAGGTCGTGT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
36 38 0.97
37 1 0.03
ACGTcount: A:0.27, C:0.28, G:0.27, T:0.19
Consensus pattern (36 bp):
AGACCGTGTGGACCACACAGCCATGTGAAACCTTAC
Found at i:23835612 original size:29 final size:31
Alignment explanation
Indices: 23835546--23835621 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 31
23835536 TGTGCTATGT
*
23835546 TATGATTTGTATGAAATATGTAAGTATGTATGCCA
1 TATGA-TT-TATGATATATGTAAGTATGTAT--CA
23835581 TATGATTTATGATATATGTAAGTATG-AT-A
1 TATGATTTATGATATATGTAAGTATGTATCA
23835610 TATGA-TTATGAT
1 TATGATTTATGAT
23835622 TTGTTTTTGT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
28 7 0.17
29 6 0.15
32 2 0.05
33 18 0.45
34 2 0.05
35 5 0.12
ACGTcount: A:0.36, C:0.03, G:0.18, T:0.43
Consensus pattern (31 bp):
TATGATTTATGATATATGTAAGTATGTATCA
Found at i:23837775 original size:25 final size:25
Alignment explanation
Indices: 23837746--23837806 Score: 122
Period size: 25 Copynumber: 2.4 Consensus size: 25
23837736 GTAAACACAG
23837746 TTTAACTGAAAGATTATTTCTCAAA
1 TTTAACTGAAAGATTATTTCTCAAA
23837771 TTTAACTGAAAGATTATTTCTCAAA
1 TTTAACTGAAAGATTATTTCTCAAA
23837796 TTTAACTGAAA
1 TTTAACTGAAA
23837807 ATAAGAGTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.39
Consensus pattern (25 bp):
TTTAACTGAAAGATTATTTCTCAAA
Found at i:23840237 original size:2 final size:2
Alignment explanation
Indices: 23840230--23840256 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
23840220 TTAAGGACTA
23840230 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
23840257 GGTTTCCATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23841356 original size:2 final size:2
Alignment explanation
Indices: 23841349--23841379 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
23841339 CACCTATCTC
23841349 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23841380 AACATATCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23848072 original size:28 final size:28
Alignment explanation
Indices: 23847999--23848085 Score: 86
Period size: 28 Copynumber: 3.0 Consensus size: 28
23847989 GGTATCTAAG
* * *
23847999 TTTTTTGGTCCAATTTCGCACCTAAACT
1 TTTTTTTGTCCAATTTAGTACCTAAACT
* *
23848027 TGGAATTTTT-TCTAATTTAGTACCTAAACT
1 T---TTTTTTGTCCAATTTAGTACCTAAACT
*
23848057 TTTTTTTGTCCAATTTGGTACCTAAACT
1 TTTTTTTGTCCAATTTAGTACCTAAACT
23848085 T
1 T
23848086 ATCAAATGTT
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
27 5 0.11
28 20 0.43
30 18 0.38
31 4 0.09
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.47
Consensus pattern (28 bp):
TTTTTTTGTCCAATTTAGTACCTAAACT
Found at i:23849697 original size:13 final size:13
Alignment explanation
Indices: 23849681--23849705 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23849671 TATAAAAAAA
23849681 TATAATAAAATTT
1 TATAATAAAATTT
23849694 TATAATAAAATT
1 TATAATAAAATT
23849706 AATATTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TATAATAAAATTT
Found at i:23849929 original size:2 final size:2
Alignment explanation
Indices: 23849922--23849957 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
23849912 ACACATAACC
23849922 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23849958 TATCATACTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23852205 original size:23 final size:25
Alignment explanation
Indices: 23852170--23852215 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
23852160 TTATAATACT
23852170 TTATAATATTTTTA-CTATTTTTTA
1 TTATAATATTTTTAGCTATTTTTTA
*
23852194 TTAT-ATATTTTTAGTTATTTTT
1 TTATAATATTTTTAGCTATTTTT
23852216 ATAAAATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (25 bp):
TTATAATATTTTTAGCTATTTTTTA
Found at i:23861259 original size:23 final size:22
Alignment explanation
Indices: 23861230--23861287 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
23861220 CTTACTTTCA
23861230 TATTATATATTATAAGATTATTT
1 TATTATATATTATAAGATTA-TT
**
23861253 TATTATATA-TATTATTATTATT
1 TATTATATATTA-TAAGATTATT
23861275 TATTATATATTAT
1 TATTATATATTAT
23861288 TTTTCACAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 14 0.45
23 17 0.55
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TATTATATATTATAAGATTATT
Found at i:23861263 original size:20 final size:22
Alignment explanation
Indices: 23861235--23861284 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
23861225 TTTCATATTA
23861235 TATATTATAAGATTA-T-TTTAT
1 TATA-TATAAGATTATTATTTAT
**
23861256 TATATATATTATTATTATTTAT
1 TATATATAAGATTATTATTTAT
23861278 TATATAT
1 TATATAT
23861285 TATTTTTCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.32
21 5 0.20
22 12 0.48
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TATATATAAGATTATTATTTAT
Found at i:23861268 original size:3 final size:3
Alignment explanation
Indices: 23861246--23861334 Score: 53
Period size: 3 Copynumber: 29.7 Consensus size: 3
23861236 ATATTATAAG
*
23861246 ATT ATT -TT ATT A-T ATAT ATT ATT ATT ATTT ATT ATAT ATT ATT TTT
1 ATT ATT ATT ATT ATT AT-T ATT ATT ATT A-TT ATT AT-T ATT ATT ATT
** * *
23861292 CACAA ATT ATT ATT ATT ATT -TT A-C ATC ATT ATT -TT ATT ATT AT
1 -A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
23861335 ATCTTACTGG
Statistics
Matches: 68, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
2 9 0.13
3 49 0.72
4 10 0.15
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:23861285 original size:20 final size:20
Alignment explanation
Indices: 23861230--23861288 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
23861220 CTTACTTTCA
* *
23861230 TATTATATATTATAAGATTAT
1 TATTATTTATTAT-ATATTAT
23861251 T-TTA-TTA-TATATATTAT
1 TATTATTTATTATATATTAT
23861268 TATTATTTATTATATATTAT
1 TATTATTTATTATATATTAT
23861288 T
1 T
23861289 TTTCACAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
17 7 0.21
18 6 0.18
19 5 0.15
20 14 0.42
21 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TATTATTTATTATATATTAT
Found at i:23861428 original size:18 final size:17
Alignment explanation
Indices: 23861405--23861439 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
23861395 TTATTTTACA
*
23861405 TTATATATATTATATTTC
1 TTATATAT-TTAAATTTC
23861423 TTATATATTTAAATTTC
1 TTATATATTTAAATTTC
23861440 ATTTTATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (17 bp):
TTATATATTTAAATTTC
Found at i:23861534 original size:37 final size:34
Alignment explanation
Indices: 23861480--23861548 Score: 86
Period size: 37 Copynumber: 1.9 Consensus size: 34
23861470 ATTTTTATTC
*
23861480 TATATTACTTTTTTTTATATATATATCATATATATCA
1 TATATTACTTTTGTTTATAT-TAT-TCAT-TATATCA
23861517 TATATTA-TTTATGTTTATATTATTCATTATAT
1 TATATTACTTT-TGTTTATATTATTCATTATAT
23861549 TATTTAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 5 0.17
35 4 0.13
36 6 0.20
37 15 0.50
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.59
Consensus pattern (34 bp):
TATATTACTTTTGTTTATATTATTCATTATATCA
Found at i:23861668 original size:13 final size:13
Alignment explanation
Indices: 23861635--23861668 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
23861625 TATTTATTAT
23861635 ATATTATTTTAAA
1 ATATTATTTTAAA
*
23861648 ATACTATTTTAAA
1 ATATTATTTTAAA
*
23861661 ATTTTATT
1 ATATTATT
23861669 AAATAGTGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (13 bp):
ATATTATTTTAAA
Found at i:23869430 original size:72 final size:72
Alignment explanation
Indices: 23869313--23869454 Score: 275
Period size: 72 Copynumber: 2.0 Consensus size: 72
23869303 GGAAAATCCT
23869313 TAATTGTTTGAATGCCCTCAACTACAATACTTTCAATACTCATGTAATGCACATAAGCTAAGTAT
1 TAATTGTTTGAATGCCCTCAACTACAATACTTTCAATACTCATGTAATGCACATAAGCTAAGTAT
23869378 GTTTCCC
66 GTTTCCC
*
23869385 TAATTGTTTGAATGCCCTCAACTGCAATACTTTCAATACTCATGTAATGCACATAAGCTAAGTAT
1 TAATTGTTTGAATGCCCTCAACTACAATACTTTCAATACTCATGTAATGCACATAAGCTAAGTAT
23869450 GTTTC
66 GTTTC
23869455 ACAACCCTTC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (72 bp):
TAATTGTTTGAATGCCCTCAACTACAATACTTTCAATACTCATGTAATGCACATAAGCTAAGTAT
GTTTCCC
Found at i:23869455 original size:36 final size:36
Alignment explanation
Indices: 23869343--23869455 Score: 90
Period size: 36 Copynumber: 3.1 Consensus size: 36
23869333 ACTACAATAC
23869343 TTTCAATACTCATGTAATGCACATAAGCTAAGTATG
1 TTTCAATACTCATGTAATGCACATAAGCTAAGTATG
** * ** * * *
23869379 TTTCCCTAATTGTTTGAATGC-CCTCAA-CTGCAA-TA-C
1 TTTCAATACTCATGT-AATGCACAT-AAGCT--AAGTATG
23869415 TTTCAATACTCATGTAATGCACATAAGCTAAGTATG
1 TTTCAATACTCATGTAATGCACATAAGCTAAGTATG
23869451 TTTCA
1 TTTCA
23869456 CAACCCTTCT
Statistics
Matches: 53, Mismatches: 16, Indels: 16
0.62 0.19 0.19
Matches are distributed among these distances:
34 2 0.04
35 9 0.17
36 31 0.58
37 9 0.17
38 2 0.04
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.35
Consensus pattern (36 bp):
TTTCAATACTCATGTAATGCACATAAGCTAAGTATG
Found at i:23871838 original size:5 final size:5
Alignment explanation
Indices: 23871828--23872007 Score: 360
Period size: 5 Copynumber: 36.0 Consensus size: 5
23871818 ATATACCCAT
23871828 AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC
1 AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC
23871878 AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC
1 AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC
23871928 AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC
1 AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC
23871978 AATAC AATAC AATAC AATAC AATAC AATAC
1 AATAC AATAC AATAC AATAC AATAC AATAC
23872008 TATTCACAAT
Statistics
Matches: 175, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 175 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAC
Found at i:23875191 original size:24 final size:24
Alignment explanation
Indices: 23875164--23875209 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
23875154 TTAAGGGTTA
*
23875164 TAGAAGTCAAAGATGATTAGGAAT
1 TAGAAGTAAAAGATGATTAGGAAT
*
23875188 TAGAAGTAAAAGTTGATTAGGA
1 TAGAAGTAAAAGATGATTAGGA
23875210 GAGTAAAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.46, C:0.02, G:0.26, T:0.26
Consensus pattern (24 bp):
TAGAAGTAAAAGATGATTAGGAAT
Found at i:23875222 original size:24 final size:24
Alignment explanation
Indices: 23875172--23875222 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
23875162 TATAGAAGTC
* *
23875172 AAAGATGATTAGGAATTAGAAGTA
1 AAAGATGATTAGGAAGTAGAAGGA
*
23875196 AAAGTTGATTAGGAGAGTA-AAGGA
1 AAAGATGATTAGGA-AGTAGAAGGA
23875220 AAA
1 AAA
23875223 ACAAAGGGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 20 0.87
25 3 0.13
ACGTcount: A:0.51, C:0.00, G:0.27, T:0.22
Consensus pattern (24 bp):
AAAGATGATTAGGAAGTAGAAGGA
Found at i:23877239 original size:29 final size:29
Alignment explanation
Indices: 23877197--23877374 Score: 266
Period size: 29 Copynumber: 6.1 Consensus size: 29
23877187 TATCAATGCT
*
23877197 CATCGAATATGAAAAGGGATAGTTTCGAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
* **
23877226 CATCAAATATGAAAAGGGATGGTGACGAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
* **
23877255 CATCGGATATGAAAAGGGATGGTGACGAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
*
23877284 CATCGAATATGAAAAGGGATGGTTTTGAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
* *
23877313 CATCGAATATGAAAAGGGATGATTTCAAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
23877342 CATCGAATATGAAAAGGGATGGTTTCGAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
23877371 CATC
1 CATC
23877375 ATTTAGCACA
Statistics
Matches: 134, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 134 1.00
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.22
Consensus pattern (29 bp):
CATCGAATATGAAAAGGGATGGTTTCGAC
Found at i:23880470 original size:15 final size:15
Alignment explanation
Indices: 23880423--23880471 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
23880413 TACGACGTCC
*
23880423 ACCATGCCCTTACGT
1 ACCATGACCTTACGT
* * *
23880438 ACCACGACCTCACAT
1 ACCATGACCTTACGT
*
23880453 ACCATGACCTTTCGT
1 ACCATGACCTTACGT
23880468 ACCA
1 ACCA
23880472 CGAGCACTCA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.27, C:0.41, G:0.10, T:0.22
Consensus pattern (15 bp):
ACCATGACCTTACGT
Found at i:23882460 original size:27 final size:27
Alignment explanation
Indices: 23882430--23882746 Score: 400
Period size: 27 Copynumber: 11.7 Consensus size: 27
23882420 TACTGAAATG
* * *
23882430 CCCTCGATTTGTAAAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
23882457 CCCTTGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * *
23882484 CCCTCTATTTACAGAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
23882511 CCCTCGATTTACAGAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
23882538 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
23882565 CCCTCGATTTAAAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * *
23882592 CCCTCGATTTTTATAATTACCATTTGA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
23882619 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
23882646 TCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
23882673 CCCTCGATTTATAAAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
23882700 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
23882727 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTATAGAATTAC
23882747 TAAAATACTC
Statistics
Matches: 258, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 258 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:23882764 original size:27 final size:27
Alignment explanation
Indices: 23882734--23882916 Score: 156
Period size: 27 Copynumber: 6.8 Consensus size: 27
23882724 TTACCCTCGA
* * *
23882734 TTTACAAAATTACTAAAATACTCTTGG
1 TTTATAAAATTACTAAAATACCCCTGG
* * *
23882761 TTTAAAAAATTACCAAAATA-CCCTCG
1 TTTATAAAATTACTAAAATACCCCTGG
* *
23882787 ATCAGTAAAATTACTAAAATACCCCTGG
1 TTTA-TAAAATTACTAAAATACCCCTGG
* *
23882815 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACTAAAATACCCCTGG
* * *
23882842 TTTGTAAAATTACCAAAATACCCCTAG
1 TTTATAAAATTACTAAAATACCCCTGG
* * *
23882869 CTTGTAAAATTA-TCAAAATACCCCTGA
1 TTTATAAAATTACT-AAAATACCCCTGG
* *
23882896 TTTGTGAAATTA-TCAAAATAC
1 TTTATAAAATTACT-AAAATAC
23882917 TCTCAATTTG
Statistics
Matches: 130, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
26 5 0.04
27 119 0.92
28 6 0.05
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
TTTATAAAATTACTAAAATACCCCTGG
Found at i:23882772 original size:54 final size:54
Alignment explanation
Indices: 23882536--23882827 Score: 183
Period size: 54 Copynumber: 5.4 Consensus size: 54
23882526 ATTATCATTT
* * * * *****
23882536 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTA-AAGAATTACCGTTT
1 TACCCTTGGTTTATAAAATTACCGTTTTACCCTCGATTTATAA-AATTACTAAAA
* * * * * * * * ***
23882590 TACCCTCGATTTTTATAATTACCATTTGACCCTCGATTTATAGAATTACCATTT
1 TACCCTTGGTTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACTAAAA
* * * * ****
23882644 TATCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACTGTTT
1 TACCCTTGGTTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACTAAAA
* * * *
23882698 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACTAAAA
* * **** *
23882752 TACTCTTGGTTTAAAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCGTTTTACCCTCGATTTA-TAAAATTACTAAAA
* *
23882806 TACCCCTGGTTTGTAAAATTAC
1 TACCCTTGGTTTATAAAATTAC
23882828 TAAAATACCC
Statistics
Matches: 201, Mismatches: 35, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
53 2 0.01
54 198 0.99
55 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (54 bp):
TACCCTTGGTTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACTAAAA
Found at i:23882900 original size:54 final size:54
Alignment explanation
Indices: 23882739--23882971 Score: 197
Period size: 54 Copynumber: 4.3 Consensus size: 54
23882729 CTCGATTTAC
* * * * ** * **
23882739 AAAATTACTAAAATACTCTTGGTTTAAAAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCT-GATTTGT
* * * *
23882793 AAAATTACTAAAATACCCCTGGTTTGTAAAATTA-CTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTATC-AAAATACCCCTGATTTGT
*
23882847 AAAATTACCAAAATACCCCTAGCTTGTAAAATTATCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTGATTTGT
* * * * * **
23882901 GAAATTATCAAAATA-CTCTCAATTTGTAAAA-TATCGAAATACCCCTG-TAGGGT
1 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCAAAATACCCCTGAT-TTGT
*
23882954 AGAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
23882972 TTATAGGGTA
Statistics
Matches: 148, Mismatches: 25, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
52 1 0.01
53 33 0.22
54 110 0.74
55 4 0.03
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTGATTTGT
Found at i:23882900 original size:81 final size:81
Alignment explanation
Indices: 23882739--23882916 Score: 236
Period size: 81 Copynumber: 2.2 Consensus size: 81
23882729 CTCGATTTAC
* *
23882739 AAAATTACTAAAATACTCTTGGTTTAAAAAATTACCAAAATACCCTCGATCAGTAAAATTACTAA
1 AAAATTACTAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTAGATCAGTAAAATTACTAA
*
23882804 AATACCCCTGGTTTGT
66 AATACCCCTGATTTGT
** * *
23882820 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGCT-TGTAAAATTA-TC
1 AAAATTACTAAAATACCCTTGGTTTAAAAAATTACCAAAATA-CCCTAGATCAGTAAAATTACT-
23882883 AAAATACCCCTGATTTGT
64 AAAATACCCCTGATTTGT
*
23882901 GAAATTA-TCAAAATAC
1 AAAATTACT-AAAATAC
23882917 TCTCAATTTG
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
80 2 0.02
81 78 0.91
82 6 0.07
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTAGATCAGTAAAATTACTAA
AATACCCCTGATTTGT
Found at i:23882925 original size:27 final size:26
Alignment explanation
Indices: 23882794--23882946 Score: 114
Period size: 27 Copynumber: 5.7 Consensus size: 26
23882784 TCGATCAGTA
**
23882794 AAATTA-CTAAAATACCCCTGGTTTGT
1 AAATTATC-AAAATACCCCTAATTTGT
* **
23882820 AAAATTA-CTAAAATACCCTTGGTTTGT
1 -AAATTATC-AAAATACCCCTAATTTGT
* **
23882847 AAAATTACCAAAATACCCCTAGCTTGT
1 -AAATTATCAAAATACCCCTAATTTGT
*
23882874 AAAATTATCAAAATACCCCTGATTTGT
1 -AAATTATCAAAATACCCCTAATTTGT
*
23882901 GAAATTATCAAAATA-CTCTCAATTTGT
1 -AAATTATCAAAATACCCCT-AATTTGT
* *
23882928 AAAATATCGAAATACCCCT
1 AAATTATCAAAATACCCCT
23882947 GTAGGGTAGA
Statistics
Matches: 109, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 15 0.14
27 93 0.85
28 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (26 bp):
AAATTATCAAAATACCCCTAATTTGT
Found at i:23882927 original size:81 final size:82
Alignment explanation
Indices: 23882739--23882946 Score: 210
Period size: 81 Copynumber: 2.6 Consensus size: 82
23882729 CTCGATTTAC
* *** ** *
23882739 AAAATTACTAAAATACTCTTGGTTTAAAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACTA
1 AAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATTACTA
*
23882803 AAATACCCCTGGTTTGT
66 AAATACCCCTGATTTGT
*** * *
23882820 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGCT-TGTAAAATTA-TC
1 AAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATTACT-
23882883 AAAATACCCCTGATTTGT
65 AAAATACCCCTGATTTGT
* * * *
23882901 GAAATTA-TCAAAATACTCTCAATTTGTAAAA-TATCGAAATACCCCT
1 AAAATTACT-AAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
23882947 GTAGGGTAGA
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
80 15 0.14
81 89 0.81
82 6 0.05
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (82 bp):
AAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATTACTA
AAATACCCCTGATTTGT
Found at i:23882978 original size:27 final size:27
Alignment explanation
Indices: 23882935--23883176 Score: 342
Period size: 27 Copynumber: 9.0 Consensus size: 27
23882925 TGTAAAATAT
23882935 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
23882962 CAAAATACCCTTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
23882989 CGAAATACCCTTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
23883016 TGAAATAACCCTGTAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
23883043 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
23883070 TGAAATA-CCCTATCGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
23883096 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
23883123 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
23883150 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
23883177 TAAGATACCC
Statistics
Matches: 192, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 25 0.13
27 167 0.87
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:23882987 original size:80 final size:80
Alignment explanation
Indices: 23882936--23883201 Score: 355
Period size: 80 Copynumber: 3.3 Consensus size: 80
23882926 GTAAAATATC
*
23882936 GAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTATAGGGTAGAATTACCGAAATACC-CT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAATTA-CGAAATACCTC-
23883000 TATAGGGTAGAATTACT
64 TATAGGGTAGAATTACT
* * *
23883017 GAAATAACCCTGTAGGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTACTGAAATACC-CT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAATTAC-GAAATACCTCT
*
23883081 ATCGGGTAGAATTACT
65 ATAGGGTAGAATTACT
* * *
23883097 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAATTA-CGAAATACCTCT
*
23883162 GTAGGGTAGAATTACT
65 ATAGGGTAGAATTACT
*
23883178 -AAGATA-CCCT-T-GGGTAAAATTACC
1 GAA-ATACCCCTGTAGGGTAGAATTACC
23883202 ATTTTTCCCC
Statistics
Matches: 168, Mismatches: 13, Indels: 11
0.88 0.07 0.06
Matches are distributed among these distances:
78 12 0.07
79 1 0.01
80 78 0.46
81 77 0.46
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (80 bp):
GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAATTACGAAATACCTCTA
TAGGGTAGAATTACT
Found at i:23883113 original size:107 final size:104
Alignment explanation
Indices: 23882926--23883201 Score: 385
Period size: 107 Copynumber: 2.6 Consensus size: 104
23882916 CTCTCAATTT
* *
23882926 GTAAAATATCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTATAGGGTAGAATTACCG
1 GTAAAATACCGAAATACCCCTGTAGGGTAGAATTA-CTAAATACCC-TAT-GGGTAGAATTACCG
* *
23882991 AAATACCCTTATAGGGTAGAATTACTGAAATAACCC-TGTAGG
63 AAATACCCCTATAGGGTAGAATTACCGAAAT-ACCCTTGTAGG
* *
23883033 GTAAAATTACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTATCGGGTAGAATTACTG
1 GTAAAA-TACCGAAATACCCCTGTAGGGTAGAATTACT-AAATACCCTAT-GGGTAGAATTACCG
*
23883098 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
63 AAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGG
*
23883140 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAGATACCCT-TGGGTAAAATTACC
1 GTA-AAATACCGAAATACCCCTGTAGGGTAGAATTACTAA-ATACCCTATGGGTAGAATTACC
23883202 ATTTTTCCCC
Statistics
Matches: 153, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
105 11 0.07
106 7 0.05
107 97 0.63
108 38 0.25
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (104 bp):
GTAAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAATACCCTATGGGTAGAATTACCGAAA
TACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGG
Found at i:23883435 original size:25 final size:25
Alignment explanation
Indices: 23883407--23883485 Score: 122
Period size: 25 Copynumber: 3.2 Consensus size: 25
23883397 AAGTGCTAAA
23883407 AGTTTACCGAAAAGGGCTTTGCCCC
1 AGTTTACCGAAAAGGGCTTTGCCCC
* *
23883432 AGTTTACTGAAAAGGACTTTGCCCC
1 AGTTTACCGAAAAGGGCTTTGCCCC
* *
23883457 AGTTTATCAAAAAGGGCTTTGCCCC
1 AGTTTACCGAAAAGGGCTTTGCCCC
23883482 AGTT
1 AGTT
23883486 ATTAAAAGAG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (25 bp):
AGTTTACCGAAAAGGGCTTTGCCCC
Found at i:23883498 original size:24 final size:24
Alignment explanation
Indices: 23883407--23883498 Score: 105
Period size: 25 Copynumber: 3.7 Consensus size: 24
23883397 AAGTGCTAAA
*
23883407 AGTTTACCGAAAAGGGCTTTGCCCC
1 AGTTTATC-AAAAGGGCTTTGCCCC
* *
23883432 AGTTTACTGAAAAGGACTTTGCCCC
1 AGTTTA-TCAAAAGGGCTTTGCCCC
23883457 AGTTTATCAAAAAGGGCTTTGCCCC
1 AGTTTATC-AAAAGGGCTTTGCCCC
*
23883482 AG-TTATTAAAAGAGGCT
1 AGTTTATCAAAAG-GGCT
23883499 AGGCCTCCTG
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
23 5 0.09
24 9 0.16
25 44 0.76
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AGTTTATCAAAAGGGCTTTGCCCC
Found at i:23888556 original size:5 final size:5
Alignment explanation
Indices: 23888546--23888574 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
23888536 TGTGTATTAT
23888546 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
23888575 TCAAAAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:23897754 original size:13 final size:14
Alignment explanation
Indices: 23897738--23897766 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
23897728 AATTGATTTA
23897738 AAGGTTAA-TTAGT
1 AAGGTTAATTTAGT
23897751 AAGGTTAATTTAGT
1 AAGGTTAATTTAGT
23897765 AA
1 AA
23897767 ACTAGCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (14 bp):
AAGGTTAATTTAGT
Found at i:23898259 original size:29 final size:28
Alignment explanation
Indices: 23898209--23898263 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 28
23898199 GTGAGTTATA
* *
23898209 CTGATTTGGCTTTAGGTAATGAATATCGG
1 CTGATTTGGCTTCAGGCAATG-ATATCGG
* *
23898238 CTGATTTGGCTTCGGGCCATGATATC
1 CTGATTTGGCTTCAGGCAATGATATC
23898264 AGTACTTCGG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 5 0.23
29 17 0.77
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.36
Consensus pattern (28 bp):
CTGATTTGGCTTCAGGCAATGATATCGG
Found at i:23902159 original size:20 final size:22
Alignment explanation
Indices: 23902124--23902170 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
23902114 TACAAATTTT
*
23902124 ATATACATTGTAATAAGCCAAA
1 ATATACATTGTAATAAACCAAA
*
23902146 ATAT-CATT-TAATAAACCAAT
1 ATATACATTGTAATAAACCAAA
23902166 ATATA
1 ATATA
23902171 TATATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 14 0.64
21 4 0.18
22 4 0.18
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (22 bp):
ATATACATTGTAATAAACCAAA
Found at i:23903364 original size:43 final size:41
Alignment explanation
Indices: 23903261--23903393 Score: 133
Period size: 43 Copynumber: 3.1 Consensus size: 41
23903251 CATCCTATCT
* * *
23903261 CATATCGATGCCACTGTCCCAGACAGGGTCTTACATGAATCA
1 CATATCGATGCCAC-GTCCCAGACATGGTCTTACACGAAACA
* * * *
23903303 AATA-CGATGCCGATGTCCCGGACATGGTCTTACACGTAACCA
1 CATATCGATGCC-ACGTCCCAGACATGGTCTTACACG-AAACA
* *
23903345 CATATCGATGCCAACGTCCCAAACATTGTCTTACACGAAAACA
1 CATATCGATGCC-ACGTCCCAGACATGGTCTTACACG-AAACA
23903388 CATATC
1 CATATC
23903394 TGATCCTATG
Statistics
Matches: 74, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
41 26 0.35
42 11 0.15
43 37 0.50
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.23
Consensus pattern (41 bp):
CATATCGATGCCACGTCCCAGACATGGTCTTACACGAAACA
Found at i:23903567 original size:2 final size:2
Alignment explanation
Indices: 23903560--23903600 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
23903550 ATTTAAAACT
23903560 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
23903601 CCAAAATTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:23905402 original size:17 final size:18
Alignment explanation
Indices: 23905380--23905418 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
23905370 GATATTTTTA
*
23905380 AAAAATATTTA-ATATAT
1 AAAAATATTTATAGATAT
23905397 AAAAATATTTATAGATAT
1 AAAAATATTTATAGATAT
23905415 AAAA
1 AAAA
23905419 CTAATGAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (18 bp):
AAAAATATTTATAGATAT
Found at i:23907469 original size:25 final size:24
Alignment explanation
Indices: 23907437--23907483 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
23907427 TTGTTTTAAT
*
23907437 ATTTATTT-TTATGTTTTTAAATCA
1 ATTTATTTATTAT-ATTTTAAATCA
23907461 ATTTGATTTATTATATTTTAAAT
1 ATTT-ATTTATTATATTTTAAAT
23907484 TTTTTGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 4 0.20
25 12 0.60
26 4 0.20
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (24 bp):
ATTTATTTATTATATTTTAAATCA
Found at i:23907474 original size:26 final size:23
Alignment explanation
Indices: 23907418--23907483 Score: 59
Period size: 25 Copynumber: 2.9 Consensus size: 23
23907408 CTCATTATTT
*
23907418 ATTTATTTTT-TGTTTT-AAT--
1 ATTTATTTTTATATTTTAAATCA
*
23907437 ATTTATTTTTATGTTTTTAAATCA
1 ATTTATTTTTAT-ATTTTAAATCA
23907461 ATTTGATTTATTATATTTTAAAT
1 ATTT-ATTT-TTATATTTTAAAT
23907484 TTTTTGATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
19 10 0.26
20 1 0.03
21 4 0.11
22 3 0.08
24 4 0.11
25 12 0.32
26 4 0.11
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.65
Consensus pattern (23 bp):
ATTTATTTTTATATTTTAAATCA
Found at i:23909539 original size:32 final size:32
Alignment explanation
Indices: 23909482--23909580 Score: 126
Period size: 32 Copynumber: 3.0 Consensus size: 32
23909472 GCCCCCCCAA
*
23909482 AAAAACCTAACCCCAAAAAAAAAAAAAGGAAAAAG
1 AAAAACCTAA-CCC--AAAAAAAAAAAGAAAAAAG
*
23909517 TAAAACCTAACCCAAAAAAAAAAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAGAAAAAAG
* *
23909549 AAAAACCTAACCAAAAAATAAAAAATAAAAAA
1 AAAAACCTAACCCAAAAA-AAAAAAGAAAAAA
23909581 ACCTAGCCAC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
32 34 0.59
33 12 0.21
34 3 0.05
35 9 0.16
ACGTcount: A:0.74, C:0.15, G:0.05, T:0.06
Consensus pattern (32 bp):
AAAAACCTAACCCAAAAAAAAAAAGAAAAAAG
Found at i:23913171 original size:29 final size:29
Alignment explanation
Indices: 23913129--23913201 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
23913119 GTGACAAGAT
23913129 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
23913158 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
23913187 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
23913202 GAATTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:23913220 original size:29 final size:29
Alignment explanation
Indices: 23913188--23913260 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
23913178 TGAAAAGTAT
* * *
23913188 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
23913217 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
23913246 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
23913261 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:23921115 original size:29 final size:29
Alignment explanation
Indices: 23921073--23921145 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
23921063 GTGACAAGAT
23921073 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
23921102 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
23921131 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
23921146 GAATTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:23921164 original size:29 final size:29
Alignment explanation
Indices: 23921132--23921204 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
23921122 TGAAAAGTAT
* * *
23921132 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
23921161 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
23921190 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
23921205 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:23926708 original size:73 final size:73
Alignment explanation
Indices: 23926588--23926754 Score: 226
Period size: 73 Copynumber: 2.3 Consensus size: 73
23926578 ATTTCCGTTT
* * *
23926588 TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTATGCTTTTC-AAAAATCAAATCATATTGCGAAAGGTGAGCTGAGCCTCAGGACACG
*
23926653 CTGAGGTAA
65 CCGAGGTAA
* * *
23926662 TTTCAATTTATGCTTTTCAAAAATCAAATCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGC
1 TTTCAATTTATGCTTTTCAAAAATCAAATCATATTGCGAAAGGTGAGCTGAGCCTCAGGACACGC
*
23926727 CGAGGTAT
66 CGAGGTAA
* * *
23926735 TTTTAATTTCTGTTTTTCAA
1 TTTCAATTTATGCTTTTCAA
23926755 TTTCTACTTT
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
73 64 0.78
74 18 0.22
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (73 bp):
TTTCAATTTATGCTTTTCAAAAATCAAATCATATTGCGAAAGGTGAGCTGAGCCTCAGGACACGC
CGAGGTAA
Found at i:23926778 original size:13 final size:13
Alignment explanation
Indices: 23926734--23926778 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
23926724 CGCCGAGGTA
23926734 TTTTTAATTTCTG
1 TTTTTAATTTCTG
*
23926747 TTTTTCAATTTCTA
1 TTTTT-AATTTCTG
*
23926761 CTTTTAATTTCTG
1 TTTTTAATTTCTG
23926774 TTTTT
1 TTTTT
23926779 CAAAAATCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.16, C:0.11, G:0.04, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:23926843 original size:100 final size:100
Alignment explanation
Indices: 23926666--23926857 Score: 287
Period size: 100 Copynumber: 1.9 Consensus size: 100
23926656 AGGTAATTTC
* *
23926666 AATTTATGCTTTTCAAAAATCAAATCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAG
1 AATTTATGCTTTTCAAAAATCAAATCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCCGAG
*
23926731 GTATTTTTAA-TTTCTGTTTTTCAATTTCTACTTTT
66 GTATTTTCAATTTTC-GTTTTTCAATTTCTACTTTT
* * * * *
23926766 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTATGCTTTTCAAAAATCAAATCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCCGAG
*
23926831 GTATTTTCAATTTTCGTTTTTTAATTT
66 GTATTTTCAATTTTCGTTTTTCAATTT
23926858 ATGTTTCAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 78 0.95
101 4 0.05
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.40
Consensus pattern (100 bp):
AATTTATGCTTTTCAAAAATCAAATCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCCGAG
GTATTTTCAATTTTCGTTTTTCAATTTCTACTTTT
Found at i:23926874 original size:87 final size:85
Alignment explanation
Indices: 23926762--23926934 Score: 249
Period size: 87 Copynumber: 2.0 Consensus size: 85
23926752 CAATTTCTAC
* *** *
23926762 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA--ACACGC
23926827 TGAGGT-ATTTTCAATTTTCGTT
64 TGAGGTAATTTT-AATTTTCGTT
*
23926849 TTTTAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACGCTG
1 TTTTAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAACACGCTG
*
23926914 AGGTAATTTTAATTTTTGTT
66 AGGTAATTTTAATTTTCGTT
23926934 T
1 T
23926935 GTCAAAAATC
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
85 21 0.27
86 5 0.06
87 52 0.67
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.39
Consensus pattern (85 bp):
TTTTAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAACACGCTG
AGGTAATTTTAATTTTCGTT
Found at i:23926966 original size:258 final size:262
Alignment explanation
Indices: 23926496--23927009 Score: 763
Period size: 258 Copynumber: 2.0 Consensus size: 262
23926486 TATTTTGATG
* *
23926496 TTTTTATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAGGTCAC
1 TTTTAATTTCTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CAC
*
23926561 ACGCTGAGGTATTTTCAATTTCCGTTTTTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGT
64 ACGCTGAGGTATTTTCAATTTCCGTTTTTTCAATTTATGC-TTTCAAAAAATCAACTCATATTGC
23926626 GAAAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTATGCTTTTCAAAAATCAAAT
128 GAAAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTTATGCTTTTCAAAAATCAAAT
* * * * * *
23926691 CATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTATTTTTAATTTCTGTTTTTCAAT
192 CATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCCGAGATATTTTCAAATTCTATTTTTCAAT
23926756 TTCTAC
257 TTCTAC
*
23926762 TTTTAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC
1 TTTTAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACAC
*
23926825 GCTGAGGTATTTTCAATTTTCGTTTTTT-AATTTATG-TTTCAAAAAAATCAACTCATATTGCGA
66 GCTGAGGTATTTTCAATTTCCGTTTTTTCAATTTATGCTTTC-AAAAAATCAACTCATATTGCGA
* * * *
23926888 GAA-GTGAGTTGAGCCTCA-AGACGCTGAGGTAATTTTAATTTTTG-TTTGTCAAAAATCAACTC
130 -AAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTATGCTTT-TCAAAAATCAAATC
* *
23926950 ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAATTCTATTTTT
193 ATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCCGAGATATTTTCAAATTCTATTTTT
23927010 ATCAAAAAAA
Statistics
Matches: 228, Mismatches: 17, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
257 3 0.01
258 88 0.39
259 4 0.02
260 36 0.16
261 10 0.04
262 31 0.14
264 40 0.18
266 16 0.07
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (262 bp):
TTTTAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACAC
GCTGAGGTATTTTCAATTTCCGTTTTTTCAATTTATGCTTTCAAAAAATCAACTCATATTGCGAA
AGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTATGCTTTTCAAAAATCAAATCATA
TTGCGAGAGGTGAGCTGAGCCTCAGGACACGCCGAGATATTTTCAAATTCTATTTTTCAATTTCT
AC
Found at i:23927031 original size:77 final size:76
Alignment explanation
Indices: 23926863--23927164 Score: 361
Period size: 77 Copynumber: 4.0 Consensus size: 76
23926853 AATTTATGTT
* *
23926863 TCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA--AGACGCTGAGGTAATTTT--
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTCA
*
23926924 AATT-TTTGTTTG
65 AATTCTTT-TTTA
*
23926936 TC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
23926999 ATTCTATTTTTA
66 ATTCT-TTTTTA
*
23927011 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
* **
23927076 TTTCTGCTTT-
66 ATTCTTTTTTA
* * * **
23927086 TCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGACTCGGGCCACACG-TCGAGGTCCTTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTATTTT
23927150 CAAATTCTATTTTTA
63 CAAATTCT-TTTTTA
23927165 ATTTCTTTTT
Statistics
Matches: 200, Mismatches: 16, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
71 38 0.19
72 5 0.03
73 12 0.06
74 4 0.02
75 49 0.25
76 6 0.03
77 83 0.41
78 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (76 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
ATTCTTTTTTA
Found at i:23927381 original size:71 final size:71
Alignment explanation
Indices: 23927283--23927418 Score: 245
Period size: 71 Copynumber: 1.9 Consensus size: 71
23927273 GTTTTAATTT
*
23927283 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTT
23927348 ATCATC
66 ATCATC
* *
23927354 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCATTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTT
23927419 CTGCTCAATT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (71 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTT
ATCATC
Found at i:23927385 original size:417 final size:412
Alignment explanation
Indices: 23926516--23927543 Score: 1145
Period size: 417 Copynumber: 2.5 Consensus size: 412
23926506 TGTCTTTCAA
* * * * *
23926516 AAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACACTGAGATATTTTCAATA
** * * *
23926581 TCCGTTTTTTCAATTTATGCTTTTC-AAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTC
64 T-C---TGCT-AATTTATG--TATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * *
23926645 AGGACACGCTGAGGTAATTTCAATTTATGCTTTTC-AAAAATCAAATCATATTGCGAGAGGTGAG
122 -GGACACGCTGAGGTATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAG
* * * * * * * *
23926709 CTGAGCCTCGGGGCACGCCGAGGTATTTTTAATTTCTGTTTTTCAATTTCTACTTTTAATTTCTG
186 TTGAGACTCGGGACACGCCGAGGTACTTTCAAATTCTATTTTTCAATTTCTACTTTTAATTTATG
* *
23926774 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
251 TGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA-GACACGCTGAGGTATTTTC
* * *
23926839 AATTTTCGTTTTTTAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
315 AATTTTCGTTTTTCAATTTATGTTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCT
* * **
23926904 CAAGACGCTGAGGTAATTTTAATTTTTGTTTGTC
380 CAAGACACTGAGGTAATTTTAA-TTTTGATCATC
* *
23926938 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAA-AT-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGATATTTTCAATATC
23927001 T-CT-ATTT-T-TATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
66 TGCTAATTTATGTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGC
23927062 TGAGGTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGACT
130 TGAGGTATTTTCAATTTCTGCTTTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGACT
* * **
23927127 CGGGCCACACGTCGAGGTCCTTTCAAATTCTATTTTT-AATTTCTTTTTTTTTTAATTTATGTGT
194 CGGG--ACACGCCGAGGTACTTTCAAATTCTATTTTTCAATTTC---TACTTTTAATTTATGTGT
* * * *
23927191 TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA-AGACGCTGAGGTGTTTTCCA
254 TTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGACACGCTGAGGTATTTTCAA
* *
23927255 -TTTC-TATTTTCAATTTCTGTTTTAATTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
317 TTTTCGT-TTTTCAATTTATG-TTTAA---AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAA
*
23927318 CCTCAAGTCACATTGAGGT-ATTTTCAA-TTT-ATCATC
377 CCTCAAG--ACACTGAGGTAATTTT-AATTTTGATCATC
* * * *
23927354 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCATTGAGGTATTTTCAATTT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGATATTTTCAATAT
* *** * * *
23927419 CTGCTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGATAAGTTGAGCCTC--ACATG
65 CTGCT-AATTTATGTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACG
* **
23927482 CTGAGGTGTTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
129 CTGAGGTATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
23927544 CCTTGGCTTA
Statistics
Matches: 525, Mismatches: 55, Indels: 54
0.83 0.09 0.09
Matches are distributed among these distances:
407 3 0.01
408 69 0.13
409 3 0.01
410 36 0.07
411 10 0.02
412 25 0.05
413 16 0.03
414 39 0.07
416 40 0.08
417 99 0.19
418 6 0.01
419 12 0.02
420 52 0.10
421 32 0.06
422 44 0.08
423 1 0.00
424 38 0.07
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (412 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGATATTTTCAATATC
TGCTAATTTATGTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCT
GAGGTATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGACTCG
GGACACGCCGAGGTACTTTCAAATTCTATTTTTCAATTTCTACTTTTAATTTATGTGTTTCAAAA
ATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGACACGCTGAGGTATTTTCAATTTTCGTTT
TTCAATTTATGTTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACACTGA
GGTAATTTTAATTTTGATCATC
Found at i:23927521 original size:155 final size:150
Alignment explanation
Indices: 23927190--23927725 Score: 516
Period size: 155 Copynumber: 3.4 Consensus size: 150
23927180 AATTTATGTG
* * * *
23927190 TTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCA
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAA
* *
23927255 TTTCTATTTTCAATTTCTGTTTTAATTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACC
65 TTTC---TGTCAATTT-TG--TT--TTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
23927320 TCA-AGTCACATTGAGGTATTTTCAATT-TA-T
122 TCACA-T-GC--TGAGGTGTTTTCAATTCTATT
** *
23927350 CATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCATTGAGGTATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGC--TGAGGTATTTTCA
* * *
23927415 ATTTCTGCTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGATAAGTTGAGCCTCACA
64 ATTTCTG-TCAATTT-TGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACA
23927480 TGCTGAGGTGTTTTCAATTTCTATT
127 TGCTGAGGTGTTTTCAA-TTCTATT
* *
23927505 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTTACACGCTGAGGTATTTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--C-AAGACGCTGAGGTA-TTT
** *
23927570 TCAATTTCTG-----TTTG--TCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGG
61 TCAATTTCTGTCAATTTTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-C-C--
* *
23927628 GTCACACGCTGAGGTGTTTTCAACTTCTGTT
122 -TCACATGCTGAGGTGTTTTCAA-TTCTATT
*
23927659 TTTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTC
1 TTTCAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA--CGCTGAGGTATTTTC
23927724 AA
63 AA
23927726 AAAAAATCAA
Statistics
Matches: 324, Mismatches: 32, Indels: 48
0.80 0.08 0.12
Matches are distributed among these distances:
149 32 0.10
150 1 0.00
151 4 0.01
152 23 0.07
153 12 0.04
154 41 0.13
155 111 0.34
156 2 0.01
157 9 0.03
158 15 0.05
159 56 0.17
160 2 0.01
161 16 0.05
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (150 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAAT
TTCTGTCAATTTTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACATGCT
GAGGTGTTTTCAATTCTATT
Found at i:23927650 original size:77 final size:76
Alignment explanation
Indices: 23927423--23927855 Score: 413
Period size: 77 Copynumber: 6.1 Consensus size: 76
23927413 CAATTTCTGC
* * * *
23927423 TCAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGATAAGTTGAG-C-C---TCACATG
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG
23927482 CTGAGGTGTTT
66 CTGAGGTGTTT
* * * *
23927493 TCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTTACACG
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG
*
23927558 CTGAGGTATTTT
66 CTGAGGT-GTTT
* *
23927570 TCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCACAC
1 TCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
23927635 GCTGAGGTGTTT
65 GCTGAGGTGTTT
* * *
23927647 TCAACTTCTGTTTTTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACGC
1 TCAATTTCTGTTTTTCAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
*
23927710 GCTGAGGTATTT
65 GCTGAGGTGTTT
23927722 TCAA------------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACG
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG
* *
23927773 CTGAGGTATTG
66 CTGAGGTGTTT
* *** * *
23927784 TCAA-TT-T-TTTGT---ATGTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACGCG
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG
*
23927841 CTGAGGTATTT
66 CTGAGGTGTTT
23927852 TCAA
1 TCAA
23927856 AAAAATCAAC
Statistics
Matches: 316, Mismatches: 30, Indels: 36
0.83 0.08 0.09
Matches are distributed among these distances:
62 53 0.17
63 6 0.02
68 54 0.17
70 14 0.04
71 32 0.10
72 1 0.00
75 18 0.06
76 18 0.06
77 68 0.22
78 52 0.16
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (76 bp):
TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG
CTGAGGTGTTT
Found at i:23927825 original size:130 final size:132
Alignment explanation
Indices: 23927586--23928057 Score: 662
Period size: 129 Copynumber: 3.5 Consensus size: 132
23927576 TCTGTTTGTC
* *
23927586 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCTGAGGTATTTTCAA
*
23927651 CTTCTGTTTTTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAG
64 -TT-TCTTTTT---AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAG
23927716 GTATTTTCA
124 GTATTTTCA
*
23927725 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATT
* **
23927790 T-TTTGT-ATGTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTT
66 TCTTTTTAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTT
23927853 C-
131 CA
*
23927854 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATT
** * * *
23927919 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACTCGTTGAGGTATT
66 TCT-TTTT-AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATT
23927984 TTCAA
129 TTC-A
* * * *
23927989 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GACACGCTGAGGTATTTTCAA
23928054 TTTC
64 TTTC
23928058 CGTTTTTCAA
Statistics
Matches: 304, Mismatches: 21, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
129 64 0.21
130 57 0.19
131 3 0.01
133 51 0.17
134 4 0.01
135 39 0.13
136 4 0.01
137 40 0.13
139 42 0.14
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATT
TCTTTTTAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTT
CA
Found at i:23927882 original size:61 final size:61
Alignment explanation
Indices: 23927658--23928053 Score: 405
Period size: 61 Copynumber: 6.1 Consensus size: 61
23927648 CAACTTCTGT
* *
23927658 TTTTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTA
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
*
23927719 TTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA
1 TTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
* * *** *
23927781 TTGTCAATTTTTTGTATGTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAG
1 TTTTCAA-------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
23927846 GTA
59 GTA
*
23927849 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
* * ** * * *
23927910 ATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACTCGT
1 TTTTCAA-----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
23927975 TGAGGTA
55 TGAGGTA
* * *
23927982 TTTTCAAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTA
1 TTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTA
23928047 TTTTCAA
1 TTTTCAA
23928054 TTTCCGTTTT
Statistics
Matches: 277, Mismatches: 35, Indels: 44
0.78 0.10 0.12
Matches are distributed among these distances:
61 61 0.22
62 57 0.21
63 37 0.13
65 15 0.05
68 54 0.19
72 51 0.18
74 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (61 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
Found at i:23928172 original size:74 final size:75
Alignment explanation
Indices: 23928086--23928228 Score: 216
Period size: 74 Copynumber: 1.9 Consensus size: 75
23928076 TTTCAAAAAA
* *
23928086 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAAT
23928150 TTCTGTGGTC
66 TTCTGTGGTC
* * * *
23928160 AAAAAAATCAACTCGTATTGCGAGAGGCGATTTGAGCCTCAGGTCATACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTCAA
23928225 TTTC
65 TTTC
23928229 CGTTTTTCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
74 40 0.66
76 21 0.34
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (75 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAAT
TTCTGTGGTC
Found at i:23928312 original size:92 final size:92
Alignment explanation
Indices: 23928160--23928330 Score: 220
Period size: 92 Copynumber: 1.9 Consensus size: 92
23928150 TTCTGTGGTC
* * * *
23928160 AAAAAAATCAACTCGTATTGCGAGAGGCGATTTGAGCCTCAGGTCATACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAAAGGCGAGTTGAGCCTCAGGTCATACGCCGAGCTATTTTCAA
*
23928225 TTTCCGTTTTTCAATTTCTGCCTTTAA
66 TTTCCGTCTTTCAATTTCTGCCTTTAA
* * * *
23928252 AAAAAAATCGACTCATATTGCGAAAGGTGAGTTGAGCCT-TGG-CTTACGCGCTGAGCTATTTTC
1 AAAAAAATCAACTCATATTGCGAAAGGCGAGTTGAGCCTCAGGTCATACGC-C-GAGCTATTTTC
*
23928315 AATTTCTGTCTTTCAA
64 AATTTCCGTCTTTCAA
23928331 AAAAATCAAC
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
90 6 0.09
91 3 0.04
92 58 0.87
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (92 bp):
AAAAAAATCAACTCATATTGCGAAAGGCGAGTTGAGCCTCAGGTCATACGCCGAGCTATTTTCAA
TTTCCGTCTTTCAATTTCTGCCTTTAA
Found at i:23928357 original size:243 final size:239
Alignment explanation
Indices: 23928086--23928566 Score: 574
Period size: 243 Copynumber: 2.0 Consensus size: 239
23928076 TTTCAAAAAA
* * *
23928086 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GACACGCTGAGGTA-ATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACACACGGAGGTATATTTCAA
* * * * *
23928149 TTTCT-GTGGTCAAAAAAATCAACTCGTATTGCGAGAGGCGATTTGAGCCTCAG-GTCATACGCC
66 TTTATAGTGGTC--AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCT-AGAGTCACACACC
** * * ** *
23928212 GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTAAAAAAAAATCGACTCATATTGCGAAA
128 GAGGTATTTTCAAAATCCGCTTTTCAAGTTAAG--TTT---AAAAAATCAACTCATATTGCGAAA
*
23928277 GGTGAGTTGAGCCTTGGCTTACGCGCTGAGCTATTTTCAATTTCTGTCTTTC
188 GGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTC
* *
23928329 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACGGAGGTATTTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-CACACACGGAGGTA---TATT
* ** * * * *
23928394 TCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATAT
62 TCAATTTATAGTGGTCAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTAGAGTCACACAC
* * *
23928459 CGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAATCAACTCATATTGCGAGAGGTG
127 CGAGGTATTTTCAAAATCCGCTTTTCAAGTTAAGTTTAAAAAATCAACTCATATTGCGAAAGGTG
23928524 AGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGT
192 AGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGT
23928567 TTTTAATGTC
Statistics
Matches: 202, Mismatches: 28, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
243 108 0.53
245 11 0.05
246 3 0.01
247 1 0.00
248 66 0.33
249 10 0.05
250 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (239 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACACACGGAGGTATATTTCAA
TTTATAGTGGTCAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTAGAGTCACACACCGAG
GTATTTTCAAAATCCGCTTTTCAAGTTAAGTTTAAAAAATCAACTCATATTGCGAAAGGTGAGTT
GAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTC
Found at i:23928389 original size:169 final size:167
Alignment explanation
Indices: 23927989--23928390 Score: 574
Period size: 171 Copynumber: 2.4 Consensus size: 167
23927979 GTATTTTCAA
23927989 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
*
23928054 TTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
66 TTTCCGTTTTTCAATTTCTGCCTTT----AAAAAAAAAATCAACTCATATTGCGAAAGGTGAGTT
*
23928119 GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTGGTC
127 GAGCCTCAGGACACGCTGAGCTAATTTCAATTTCTGTGGTC
* *
23928160 AAAAAAATCAACTCGTATTGCGAGAGGCGATTTGAGCCTCAGGTCATACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
*
23928225 TTTCCGTTTTTCAATTTCTGCCTTT-AAAAAAAAATCGACTCATATTGCGAAAGGTGAGTTGAGC
66 TTTCCGTTTTTCAATTTCTGCCTTTAAAAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGC
* * * **
23928289 CT-TGGCTTACGCGCTGAGCTATTTTCAATTTCTGTCTTTC
131 CTCAGG---ACACGCTGAGCTAATTTCAATTTCTGT-GGTC
* * * * * *
23928329 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACGGAGGTATTTT
1 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTT
23928391 TTTTCAATTT
Statistics
Matches: 209, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
165 2 0.01
166 39 0.19
168 24 0.11
169 56 0.27
171 88 0.42
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (167 bp):
AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
TTTCCGTTTTTCAATTTCTGCCTTTAAAAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGC
CTCAGGACACGCTGAGCTAATTTCAATTTCTGTGGTC
Found at i:23928428 original size:79 final size:80
Alignment explanation
Indices: 23928331--23928531 Score: 232
Period size: 79 Copynumber: 2.4 Consensus size: 80
23928321 TGTCTTTCAA
23928331 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACA-CGGAGGTA-TT-T-T-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG-TCACACATC-GAGGTATTTATCTC
* *
23928391 TTTTCAATTTATATTTTTC
64 TTTTCAAGTTA-A-GTTTC
* *
23928410 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGTCACACATCGAGGTA-TTT----A
23928475 TCTGCTTTTCAAGTTAAGTTTC
60 TCT-CTTTTCAAGTTAAGTTTC
23928497 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
23928532 CTTGGCTCAC
Statistics
Matches: 106, Mismatches: 4, Indels: 17
0.83 0.03 0.13
Matches are distributed among these distances:
79 46 0.43
80 6 0.06
81 2 0.02
86 2 0.02
87 39 0.37
88 1 0.01
89 10 0.09
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (80 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGTCACACATCGAGGTATTTATCTCTT
TTCAAGTTAAGTTTC
Found at i:23929243 original size:32 final size:33
Alignment explanation
Indices: 23929190--23929267 Score: 138
Period size: 33 Copynumber: 2.4 Consensus size: 33
23929180 CCCCCCCAAA
*
23929190 AAAAACCTAACCCCCCAAAAAAAAAGGAAAAAG
1 AAAAACCTAACCCCCCAAAAAAAAAGAAAAAAG
*
23929223 TAAAACCTAACCCCCCAAAAAAAAAGAAAAAAG
1 AAAAACCTAACCCCCCAAAAAAAAAGAAAAAAG
23929256 AAAAACCTAACC
1 AAAAACCTAACC
23929268 AAAAAATAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.63, C:0.26, G:0.06, T:0.05
Consensus pattern (33 bp):
AAAAACCTAACCCCCCAAAAAAAAAGAAAAAAG
Found at i:23929279 original size:33 final size:33
Alignment explanation
Indices: 23929190--23929287 Score: 99
Period size: 33 Copynumber: 3.0 Consensus size: 33
23929180 CCCCCCCAAA
*** *
23929190 AAAAACCTAACCCCCCAAAAAAAAAGGAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAAGAAAAAAG
* ***
23929223 TAAAACCTAACCCCCCAAAAAAAAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAAGAAAAAAG
*
23929256 AAAAACCTAA-CCAAAAAATAAAAAATAAAAAA
1 AAAAACCTAACCCAAAAAA-AAAAAAGAAAAAA
23929288 ACCTAGCCAC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
32 5 0.09
33 52 0.91
ACGTcount: A:0.68, C:0.20, G:0.05, T:0.06
Consensus pattern (33 bp):
AAAAACCTAACCCAAAAAAAAAAAAGAAAAAAG
Found at i:23931740 original size:26 final size:26
Alignment explanation
Indices: 23931711--23931763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23931701 AAAGAAGAAA
*
23931711 AACTAGGGAGAGGAGAACAATGGATG
1 AACTAGGGAAAGGAGAACAATGGATG
23931737 AACTAGGGAAAGGAGAACAATGGATG
1 AACTAGGGAAAGGAGAACAATGGATG
23931763 A
1 A
23931764 CAATTGAGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.45, C:0.08, G:0.36, T:0.11
Consensus pattern (26 bp):
AACTAGGGAAAGGAGAACAATGGATG
Found at i:23949198 original size:42 final size:43
Alignment explanation
Indices: 23949082--23949200 Score: 134
Period size: 44 Copynumber: 2.8 Consensus size: 43
23949072 CGATATGTGT
* *
23949082 TTTCGTGTAAGTCCATGTCTGGGAAGTTGGCATCAACTTATGA
1 TTTCGTGTAAGACCATGTCTGGGACGTTGGCATCAACTTATGA
* * *
23949125 TTTACGTGTAAGACCATGTTTGGGACATTGGCATCGTA-TT-TGA
1 TTT-CGTGTAAGACCATGTCTGGGACGTTGGCATC-AACTTATGA
* * *
23949168 TTTCATGTAAGACCACGTCTAGGACGTTGGCAT
1 TTTCGTGTAAGACCATGTCTGGGACGTTGGCAT
23949201 TGTACGAGCT
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
42 25 0.39
43 9 0.14
44 29 0.45
45 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (43 bp):
TTTCGTGTAAGACCATGTCTGGGACGTTGGCATCAACTTATGA
Found at i:23949516 original size:17 final size:17
Alignment explanation
Indices: 23949483--23949527 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
23949473 ATTCGTACAA
*
23949483 ATGATTTGTTTATAGTT
1 ATGATTTGTATATAGTT
23949500 ATGATTTGTGATA-AGTT
1 ATGATTTGT-ATATAGTT
23949517 -T-ATTTGTATAT
1 ATGATTTGTATAT
23949528 TACTTACTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
14 3 0.12
15 6 0.24
16 1 0.04
17 13 0.52
18 2 0.08
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.56
Consensus pattern (17 bp):
ATGATTTGTATATAGTT
Found at i:23952570 original size:22 final size:23
Alignment explanation
Indices: 23952517--23952581 Score: 80
Period size: 22 Copynumber: 2.8 Consensus size: 23
23952507 CAACTTGTAT
*
23952517 GAGCTTACTGTTCTCAGCTCGT-A
1 GAGCTTACTGTT-TCAACTCGTCA
*
23952540 TGAGTTTACTG-TTCAACTCGTCA
1 -GAGCTTACTGTTTCAACTCGTCA
23952563 GAGCTTACTGTTTCAACTC
1 GAGCTTACTGTTTCAACTC
23952582 AACACAGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
22 17 0.47
23 10 0.28
24 9 0.25
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (23 bp):
GAGCTTACTGTTTCAACTCGTCA
Found at i:23952590 original size:23 final size:22
Alignment explanation
Indices: 23952545--23952599 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 22
23952535 TCGTATGAGT
** *
23952545 TTACTGTTCAACTCGTCAGAGC
1 TTACTGTTCAACTCAACACAGC
23952567 TTACTGTTTCAACTCAACACAGC
1 TTACTG-TTCAACTCAACACAGC
*
23952590 TTACCGTTCA
1 TTACTGTTCA
23952600 TCAGCTCAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
TTACTGTTCAACTCAACACAGC
Found at i:23955223 original size:48 final size:48
Alignment explanation
Indices: 23955171--23955298 Score: 141
Period size: 48 Copynumber: 2.7 Consensus size: 48
23955161 TGTCGAGGCG
* * * *
23955171 GATGCCATGTCCTAGACATGGTCTTACACTAGCTTTCGT-CTCAACGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-AACGCC
* * * *** *
23955219 GATGCCATGTCCCATACATGGTCTTAAACTGGCTCTCATAATGTGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATAACGCC
23955267 GATGCCATGTCCCAGACATGGTCTTACACTAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAG
23955299 GACACATATC
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
48 64 0.98
49 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATAACGCC
Found at i:23958597 original size:40 final size:40
Alignment explanation
Indices: 23958542--23958763 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
23958532 TATTCGAATG
*
23958542 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
23958582 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
23958622 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
23958662 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
23958702 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
23958742 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
23958764 TACTTGGGTT
Statistics
Matches: 170, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.08
40 154 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:23970433 original size:40 final size:40
Alignment explanation
Indices: 23970367--23970533 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
23970357 AAATTGAATG
* * *
23970367 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
23970406 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
23970446 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
23970486 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
23970526 ATATCCGG
1 ATATCCGG
23970534 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:23978433 original size:24 final size:23
Alignment explanation
Indices: 23978406--23978541 Score: 211
Period size: 24 Copynumber: 5.8 Consensus size: 23
23978396 CTTATTATGT
*
23978406 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAG-AAA
23978430 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAG-AAA
23978454 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAG-AAA
*
23978478 TCGCACACATAGTGCCATAG-TA
1 TCGCACACATAGTGCCATAGAAA
*
23978500 TCGCACACATAGTGCCATAGTAA
1 TCGCACACATAGTGCCATAGAAA
23978523 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
23978542 TATTTCCAGC
Statistics
Matches: 107, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
22 21 0.20
23 20 0.19
24 66 0.62
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.21
Consensus pattern (23 bp):
TCGCACACATAGTGCCATAGAAA
Found at i:23978436 original size:48 final size:44
Alignment explanation
Indices: 23978384--23978537 Score: 191
Period size: 48 Copynumber: 3.3 Consensus size: 44
23978374 ACCGAATGTG
*
23978384 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGCGAATC
1 GCACACATAGTGC-TA-TA-GTTCGCACACATAGTGCCATAG-AAATC
*
23978432 GCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTATAGT---TCGCACACATAGTGCCATAG-AAATC
* *
23978480 GCACACATAGTGCCATAGTATCGCACACATAGTGCCATAGTAATC
1 GCACACATAGTGCTATAGT-TCGCACACATAGTGCCATAGAAATC
23978525 GCACACATAGTGC
1 GCACACATAGTGC
23978538 CATATATTTC
Statistics
Matches: 99, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
45 19 0.19
46 23 0.23
47 1 0.01
48 56 0.57
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (44 bp):
GCACACATAGTGCTATAGTTCGCACACATAGTGCCATAGAAATC
Found at i:23986196 original size:24 final size:24
Alignment explanation
Indices: 23986169--23986307 Score: 251
Period size: 24 Copynumber: 5.8 Consensus size: 24
23986159 CTTATTATGT
*
23986169 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
23986193 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
23986217 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
**
23986241 TCGCACACATAGTGCCATAGTGGA
1 TCGCACACATAGTGCCATAGTAAA
23986265 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
23986289 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
23986308 TATTTCCAGC
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 110 1.00
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:23986203 original size:48 final size:46
Alignment explanation
Indices: 23986147--23986308 Score: 216
Period size: 48 Copynumber: 3.4 Consensus size: 46
23986137 ACCGAAGGTG
* *
23986147 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTGAATC
1 GCACACATAGTGC-TA-TATGATCGCACACATAGTGCCATAGTAAATC
* *
23986195 GCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTATA-T-GATCGCACACATAGTGCCATAGTAAATC
*
23986243 GCACACATAGTGCCATAGTGGATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTATA-T-GATCGCACACATAGTGCCATAGTAAATC
*
23986291 GCACACATAGTGCCATAT
1 GCACACATAGTGCTATAT
23986309 ATTTCCAGCA
Statistics
Matches: 106, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
46 2 0.02
47 3 0.03
48 101 0.95
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (46 bp):
GCACACATAGTGCTATATGATCGCACACATAGTGCCATAGTAAATC
Found at i:23995541 original size:12 final size:12
Alignment explanation
Indices: 23995524--23995549 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23995514 GTAACAGGTG
23995524 CATTACACAAAC
1 CATTACACAAAC
23995536 CATTACACAAAC
1 CATTACACAAAC
23995548 CA
1 CA
23995550 AATGGCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (12 bp):
CATTACACAAAC
Found at i:23998427 original size:81 final size:81
Alignment explanation
Indices: 23998301--23998482 Score: 224
Period size: 81 Copynumber: 2.2 Consensus size: 81
23998291 TACTGAAATG
** * *
23998301 CCCTCGATTTGTAAAATTACCGTTTTACCCCTAATTTACATAATTACCATTTTACCCCCGATTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCCTAATTTACAGAATTACCATTTTACCCCCGATTTA
*
23998366 CATAATTA-TCGTTTTA
66 CAGAATTACT-GTTTTA
* * * ** **
23998382 CCCTCGATTTACAGAATTACCATTTTA-CCCTCGATTTATAGAATTACTGTTTTACCCTTGATTT
1 CCCTCGATTTACAAAATTACCATTTTACCCCT-AATTTACAGAATTACCATTTTACCCCCGATTT
23998446 ACAGAATTACTGTTTTA
65 ACAGAATTACTGTTTTA
23998463 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTACAAAATTAC
23998483 TAAAATACCC
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 4 0.05
81 81 0.94
82 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTACAAAATTACCATTTTACCCCTAATTTACAGAATTACCATTTTACCCCCGATTTA
CAGAATTACTGTTTTA
Found at i:23998483 original size:27 final size:27
Alignment explanation
Indices: 23998301--23998483 Score: 199
Period size: 27 Copynumber: 6.8 Consensus size: 27
23998291 TACTGAAATG
** * *
23998301 CCCTCGATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
* * **
23998328 CCC-CTAATTTACATAATTACCATTTTA
1 CCCTC-GATTTACAGAATTACTGTTTTA
* *
23998355 CCCCCGATTTACATAATTA-TCGTTTTA
1 CCCTCGATTTACAGAATTACT-GTTTTA
**
23998382 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
23998409 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
23998436 CCCTTGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
23998463 CCCTCGATTTACAAAATTACT
1 CCCTCGATTTACAGAATTACT
23998484 AAAATACCCT
Statistics
Matches: 133, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 131 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACTGTTTTA
Found at i:23998483 original size:54 final size:54
Alignment explanation
Indices: 23998301--23998483 Score: 233
Period size: 54 Copynumber: 3.4 Consensus size: 54
23998291 TACTGAAATG
** * * * *
23998301 CCCTCGATTTGTAAAATTACCGTTTTACCCCTAATTTACATAATTACCATTTTA
1 CCCTCGATTTACAAAATTACTGTTTTACCCTTGATTTACAGAATTACCATTTTA
* * *
23998355 CCCCCGATTTACATAATTA-TCGTTTTACCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACT-GTTTTACCCTTGATTTACAGAATTACCATTTTA
* * **
23998409 CCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACTGTTTTACCCTTGATTTACAGAATTACCATTTTA
23998463 CCCTCGATTTACAAAATTACT
1 CCCTCGATTTACAAAATTACT
23998484 AAAATACCCT
Statistics
Matches: 110, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
54 109 0.99
55 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTACAAAATTACTGTTTTACCCTTGATTTACAGAATTACCATTTTA
Found at i:23998506 original size:27 final size:27
Alignment explanation
Indices: 23998461--23998546 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 27
23998451 ATTACTGTTT
* ** *
23998461 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCAATTTGTAAAATTACCAAAA
* * * **
23998488 TACCCTTAGTTTGTGAAATTACCGCAA
1 TACCCTCAATTTGTAAAATTACCAAAA
*
23998515 TACCCTCAATTTGTAAAACTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAA
23998542 TACCC
1 TACCC
23998547 CTGTATGGTA
Statistics
Matches: 44, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.38, C:0.26, G:0.07, T:0.29
Consensus pattern (27 bp):
TACCCTCAATTTGTAAAATTACCAAAA
Found at i:23999750 original size:25 final size:25
Alignment explanation
Indices: 23999722--23999769 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23999712 TTATACCATG
* * *
23999722 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
23999747 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
23999770 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:23999853 original size:11 final size:11
Alignment explanation
Indices: 23999817--23999872 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
23999807 TATGGTATGT
23999817 ATGATATGCAC
1 ATGATATGCAC
* *
23999828 ATGAAATG--T
1 ATGATATGCAC
23999837 ATGATATGCAC
1 ATGATATGCAC
*
23999848 ATGATATG--T
1 ATGATATGCAC
23999857 ATGATATGCAC
1 ATGATATGCAC
23999868 ATGAT
1 ATGAT
23999873 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:23999872 original size:20 final size:20
Alignment explanation
Indices: 23999812--23999872 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
23999802 ATAAATATGG
23999812 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
23999832 AATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
23999852 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
23999872 T
1 T
23999873 GTAATCATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:23999949 original size:24 final size:24
Alignment explanation
Indices: 23999922--24000088 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
23999912 GAGGAAGTGA
23999922 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
23999946 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
23999970 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
23999994 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
24000017 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
24000041 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
24000065 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
24000089 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 101 0.75
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:24000039 original size:71 final size:71
Alignment explanation
Indices: 23999922--24000089 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
23999912 GAGGAAGTGA
23999922 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
23999987 AGTTATC
65 AGTTATC
** *
23999994 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
24000059 GTTATT
66 GTTATC
*
24000065 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
24000090 TGATAAAGCA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 54 0.61
72 35 0.39
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:24000315 original size:31 final size:31
Alignment explanation
Indices: 24000280--24000343 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
24000270 CGTTTACAGT
24000280 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
24000311 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
24000342 AA
1 AA
24000344 CATGCAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:24008149 original size:26 final size:26
Alignment explanation
Indices: 24008114--24008249 Score: 199
Period size: 26 Copynumber: 5.3 Consensus size: 26
24008104 GAGGAAGTGA
24008114 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
24008140 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
24008166 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
24008192 AAAAGGGCTTATGCCCCAGATTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
24008218 -AAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
24008240 AAAAGAGGCT
1 AAAAG-GGCT
24008250 AGGCCTCCAG
Statistics
Matches: 101, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
23 8 0.08
24 12 0.12
25 9 0.09
26 72 0.71
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:24015224 original size:43 final size:43
Alignment explanation
Indices: 24015149--24015230 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 43
24015139 ATTACCGAGA
* **
24015149 TGTGATTATATGTAAGACTGTGTATGGAACATTGCCATTGTAT
1 TGTGATTACATGTAAGACCATGTATGGAACATTGCCATTGTAT
* * * *
24015192 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATT
1 TGTGATTACATGTAAGACCATGTATGGAACATTGCCATT
24015231 ATTATATGAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 32 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.37
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTATGGAACATTGCCATTGTAT
Found at i:24019400 original size:17 final size:17
Alignment explanation
Indices: 24019378--24019410 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24019368 CAGCCAAAGG
24019378 GGTATTCATAGGTTGAA
1 GGTATTCATAGGTTGAA
*
24019395 GGTATTTATAGGTTGA
1 GGTATTCATAGGTTGA
24019411 CAAGGCTGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.03, G:0.30, T:0.39
Consensus pattern (17 bp):
GGTATTCATAGGTTGAA
Found at i:24027807 original size:40 final size:40
Alignment explanation
Indices: 24027762--24027928 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
24027752 CGGAATATAA
24027762 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
24027802 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
24027842 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
24027882 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
24027921 CCGGATAT
1 CCGGATAT
24027929 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:24035799 original size:40 final size:40
Alignment explanation
Indices: 24035754--24035920 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
24035744 CGGAATATAA
24035754 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
24035794 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
24035834 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
24035874 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
24035913 CCGGATAT
1 CCGGATAT
24035921 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:24040292 original size:39 final size:39
Alignment explanation
Indices: 24040248--24040599 Score: 591
Period size: 39 Copynumber: 9.1 Consensus size: 39
24040238 ATTATATTAT
* *
24040248 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
24040287 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
24040326 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
24040365 CAGCACGAAGCCTACGGGACTTTAG-CCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
24040403 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
24040442 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
24040481 CAGCACGAAGCCTGCAGGACTTTGGCCCGGATATATTT-
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
24040519 CAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
24040558 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
24040597 CAG
1 CAG
24040600 TGTCTTGCAT
Statistics
Matches: 297, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
38 71 0.24
39 226 0.76
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:24040409 original size:116 final size:116
Alignment explanation
Indices: 24040248--24040599 Score: 589
Period size: 116 Copynumber: 3.0 Consensus size: 116
24040238 ATTATATTAT
* * *
24040248 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
1 CAGCACGAAGCCTGCGGGACTTT-AGCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
24040313 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
65 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
*
24040365 CAGCACGAAGCCTACGGGACTTTAGCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCC
1 CAGCACGAAGCCTGCGGGACTTTAGCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCC
*
24040430 CGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
66 CGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
* * * *
24040481 CAGCACGAAGCCTGCAGGACTTTGGCCCGGATATATTT-CAGCACGAAGCCTGTGGGACTTTAGC
1 CAGCACGAAGCCTGCGGGACTTTAG-CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
*
24040545 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
65 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
24040597 CAG
1 CAG
24040600 TGTCTTGCAT
Statistics
Matches: 222, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
116 190 0.86
117 32 0.14
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (116 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCC
CGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
Found at i:24040471 original size:155 final size:155
Alignment explanation
Indices: 24040248--24040599 Score: 625
Period size: 155 Copynumber: 2.3 Consensus size: 155
24040238 ATTATATTAT
* *
24040248 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
*
24040313 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCT
66 CCGGATACATTTCCAGCACGAAGCCTGCAGGACTTTGGCCCGGATACATTT-CAGCACGAAGCCT
24040378 ACGGGACTTTAG-CCGGATACATTTC
130 ACGGGACTTTAGCCCGGATACATTTC
24040403 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
* * *
24040468 CCGGATATATTTCCAGCACGAAGCCTGCAGGACTTTGGCCCGGATATATTTCAGCACGAAGCCTG
66 CCGGATACATTTCCAGCACGAAGCCTGCAGGACTTTGGCCCGGATACATTTCAGCACGAAGCCTA
*
24040533 TGGGACTTTAGCCCGGATACATTTC
131 CGGGACTTTAGCCCGGATACATTTC
24040558 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
24040600 TGTCTTGCAT
Statistics
Matches: 189, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
154 23 0.12
155 166 0.88
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (155 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
CCGGATACATTTCCAGCACGAAGCCTGCAGGACTTTGGCCCGGATACATTTCAGCACGAAGCCTA
CGGGACTTTAGCCCGGATACATTTC
Found at i:24046285 original size:28 final size:28
Alignment explanation
Indices: 24046224--24046321 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
24046214 TCACAAATTG
** * *
24046224 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
24046253 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
24046281 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
24046309 GCACTAAGTGTGC
1 GCACTAAGTGTGC
24046322 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:24053741 original size:40 final size:40
Alignment explanation
Indices: 24053696--24053863 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
24053686 CGGAATATAA
24053696 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
24053736 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
24053776 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
24053816 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
24053856 CCGGATAT
1 CCGGATAT
24053864 TATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Done.