Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 99 of 444
Found at i:24057173 original size:28 final size:28
Alignment explanation
Indices: 24057112--24057209 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
24057102 TCACAAATTG
** * *
24057112 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
24057141 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
24057169 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
24057197 GCACTAAGTGTGC
1 GCACTAAGTGTGC
24057210 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:24063288 original size:49 final size:49
Alignment explanation
Indices: 24063230--24063358 Score: 163
Period size: 49 Copynumber: 2.6 Consensus size: 49
24063220 CCTCAAGCCA
* * * * *
24063230 ATGCCATGTCCCAGATACGTCTTACACTAGCT-TGCATATCTTGAG-GCTG
1 ATGCCATGTCCCAGACAAGTCTTACACTAGCTCT-CATATATCG-GTGCCG
* *
24063279 ATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGGTGCCG
1 ATGCCATGTCCCAGACAAGTCTTACACTAGCTCTCATATATCGGTGCCG
24063328 ATGCCATGTCCCAGACAAGTCTTACACTAGC
1 ATGCCATGTCCCAGACAAGTCTTACACTAGC
24063359 ACACACATCA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
48 1 0.01
49 69 0.97
50 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAAGTCTTACACTAGCTCTCATATATCGGTGCCG
Found at i:24071327 original size:2 final size:2
Alignment explanation
Indices: 24071320--24071354 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
24071310 ATGTGCAAAA
* *
24071320 AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24071355 AAATATACAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:24071456 original size:2 final size:2
Alignment explanation
Indices: 24071443--24071576 Score: 61
Period size: 2 Copynumber: 70.0 Consensus size: 2
24071433 GGAATTTAAA
* * *
24071443 AT AT AC AT AT AT AT AT AT AT AT AT AT GT AT AT A- AT AGT AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
* * * * **
24071485 A- AG A- AT AT AT AC AT A- AG AA AT AT AT A- ACT A- AT GGC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT -AT AT AT
* * *
24071524 AT AC AT A- AT AT AT AT AT AT A- AT AC AC AT A- AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
24071563 AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT
24071577 TAGAAATGAT
Statistics
Matches: 100, Mismatches: 20, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
1 9 0.09
2 88 0.88
3 3 0.03
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.39
Consensus pattern (2 bp):
AT
Found at i:24072422 original size:14 final size:15
Alignment explanation
Indices: 24072387--24072422 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
24072377 TTTTTTGGTT
24072387 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
24072402 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
24072416 TTTTTTT
1 TTTTTTT
24072423 TTGGTGCTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:24072423 original size:15 final size:16
Alignment explanation
Indices: 24072386--24072423 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
24072376 TTTTTTTGGT
24072386 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
24072402 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
24072416 TTTTTTTT
1 TTTTTTTT
24072424 TGGTGCTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:24072902 original size:35 final size:35
Alignment explanation
Indices: 24072862--24072967 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
24072852 GGGGTGTGTG
*
24072862 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
24072897 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
24072932 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
24072967 A
1 A
24072968 GAGGCAAGTG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:24075745 original size:305 final size:299
Alignment explanation
Indices: 24075186--24075792 Score: 925
Period size: 305 Copynumber: 2.0 Consensus size: 299
24075176 TGAATTAAAT
* * *
24075186 TTTCAATTTCTCTAAGTTTTCTCCCAACAAACCGTCCAAGCCCCTACTCTCTTTACTTTTTTTTT
1 TTTCAATTTCCCTAAGTTTTCTCCCAACAAACCGTCCAAGCCCCCACTCTCTTTAC-TTTTTCTT
* *
24075251 GTTGTTTCTTTGCATTTTTCTATTTTTCCTTTTACTGTCGTTTTTCCTTTCTTCTTTTCTTCTTC
65 GTTGTTTCTCTGCATTTTTCTATTTTTCCTTTTACTGTCATTTTTCCTTTCTTCTTTTCTTCTTC
*
24075316 TCCAAAATTCTTCTTTTGAAGCTTTCTTTATCTCAATTGTGACTTTTCTGCTTCGCTTTTTGTTT
130 TCCAAAATTCTTCTTTTGAAGCTTTCTTTATCTCAATTGTGACTTTTCTGCTTCGCCTTTTGTTT
*
24075381 CCCTTTCTTCGTGGTGGATTTGTGTCAGGTTCGATAAGTTATTTTGAAGATTAATTTTCTGAGGT
195 CCCTTTCTTCGTGGTGGATTTGTGTCAGGTTCGATAAGTTATTTTGAAAATTAATTTTCTGAGGT
*
24075446 TGGAAAGTTTCGTTAGGAAGAGTTAAAAGTTCGTTGCTAG
260 TGGAAAGTTTCGTTAAGAAGAGTTAAAAGTTCGTTGCTAG
* *
24075486 TTTCAATTTCCCTAAGTTTTCTCCCAATAAACTGTCCAAGCCCCCACTCTCTTTAC-TTTTCTTG
1 TTTCAATTTCCCTAAGTTTTCTCCCAACAAACCGTCCAAGCCCCCACTCTCTTTACTTTTTCTTG
**
24075550 TTGTTTCTCTGTTTTTTTCTATTTTT-CTTTTACTGTCATTTTTCCTTTCTTCTTTTCTTCTTCT
66 TTGTTTCTCTGCATTTTTCTATTTTTCCTTTTACTGTCATTTTTCCTTTCTTCTTTTCTTCTTCT
*
24075614 CCAAGATTCTTCTTTTATTACACGAAAGCTTTCTTTATCTCAATTGTGACTTTGTC-GCTTCGCC
131 CCAAAATTCTTC--TT-TT----G-AAGCTTTCTTTATCTCAATTGTGACTTT-TCTGCTTCGCC
* * * *
24075678 TTTTGTTTCCCTTTCTTTGTGGTGGATTTGTGTCGGGTTCGGTAAGTTATTTT-AAAATTTTATT
187 TTTTGTTTCCCTTTCTTCGTGGTGGATTTGTGTCAGGTTCGATAAGTTATTTTGAAAA-TTAATT
*
24075742 TTCTGAGGTTGGAATGTTTCGTTAAGAAGAGTTAAAAGTTCGTTGCTAG
251 TTCTGAGGTTGGAAAGTTTCGTTAAGAAGAGTTAAAAGTTCGTTGCTAG
24075791 TT
1 TT
24075793 CCTCTTGAGA
Statistics
Matches: 279, Mismatches: 18, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
297 48 0.17
298 30 0.11
299 2 0.01
300 54 0.19
304 4 0.01
305 139 0.50
306 2 0.01
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.50
Consensus pattern (299 bp):
TTTCAATTTCCCTAAGTTTTCTCCCAACAAACCGTCCAAGCCCCCACTCTCTTTACTTTTTCTTG
TTGTTTCTCTGCATTTTTCTATTTTTCCTTTTACTGTCATTTTTCCTTTCTTCTTTTCTTCTTCT
CCAAAATTCTTCTTTTGAAGCTTTCTTTATCTCAATTGTGACTTTTCTGCTTCGCCTTTTGTTTC
CCTTTCTTCGTGGTGGATTTGTGTCAGGTTCGATAAGTTATTTTGAAAATTAATTTTCTGAGGTT
GGAAAGTTTCGTTAAGAAGAGTTAAAAGTTCGTTGCTAG
Found at i:24077441 original size:19 final size:20
Alignment explanation
Indices: 24077405--24077442 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
24077395 TTGGCTTTAA
24077405 TTTAAATATATAAACTATTT
1 TTTAAATATATAAACTATTT
*
24077425 TTTAAATAT-TCAACTATT
1 TTTAAATATATAAACTATT
24077443 ATTATTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTAAATATATAAACTATTT
Found at i:24078342 original size:16 final size:17
Alignment explanation
Indices: 24078314--24078350 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
24078304 TGTTGTCAAT
24078314 ATTTTATATTTTTTATA
1 ATTTTATATTTTTTATA
*
24078331 ATTTTA-ATTTTTTTTA
1 ATTTTATATTTTTTATA
24078347 ATTT
1 ATTT
24078351 CCAATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
ATTTTATATTTTTTATA
Found at i:24084446 original size:37 final size:37
Alignment explanation
Indices: 24084353--24084456 Score: 120
Period size: 37 Copynumber: 2.8 Consensus size: 37
24084343 CTTATCACGA
*
24084353 TGGCATGCTTAACATACATTCAGT-AAACAATAATAG
1 TGGCATGCTTTACATACATTCAGTAAAACAATAATAG
* ** * * *
24084389 TGGTATGCTTTGGATACATTCAATAAAACAGTAATGG
1 TGGCATGCTTTACATACATTCAGTAAAACAATAATAG
*
24084426 TGGCATGCTTTACATGCATTCAGTAAGAACA
1 TGGCATGCTTTACATACATTCAGTAA-AACA
24084457 TAACATTTAA
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
36 19 0.35
37 31 0.57
38 4 0.07
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (37 bp):
TGGCATGCTTTACATACATTCAGTAAAACAATAATAG
Found at i:24093266 original size:15 final size:15
Alignment explanation
Indices: 24093246--24093276 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24093236 GCACTTACAG
*
24093246 AAACCAAAAATAATA
1 AAACCAAAAAAAATA
24093261 AAACCAAAAAAAATA
1 AAACCAAAAAAAATA
24093276 A
1 A
24093277 GTCTAAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.77, C:0.13, G:0.00, T:0.10
Consensus pattern (15 bp):
AAACCAAAAAAAATA
Found at i:24094772 original size:3 final size:3
Alignment explanation
Indices: 24094764--24094869 Score: 205
Period size: 3 Copynumber: 35.7 Consensus size: 3
24094754 TTTGGATTTC
24094764 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
24094812 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
24094860 ATT ATT -TT AT
1 ATT ATT ATT AT
24094870 GTTAGTTACC
Statistics
Matches: 102, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
2 2 0.02
3 100 0.98
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:24105771 original size:28 final size:27
Alignment explanation
Indices: 24105708--24105777 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
24105698 ATAGTGAGTC
24105708 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
24105735 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
24105763 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24105778 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:24110873 original size:19 final size:19
Alignment explanation
Indices: 24110849--24110895 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
24110839 CGCCTTCTTT
24110849 TTTGCATT-CATCCCATGCA
1 TTTGCATTACATCCCAT-CA
*
24110868 TTTGCATTACATCGCATCA
1 TTTGCATTACATCCCATCA
*
24110887 TATGCATTA
1 TTTGCATTA
24110896 AATTTCGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.38
Consensus pattern (19 bp):
TTTGCATTACATCCCATCA
Found at i:24124076 original size:40 final size:40
Alignment explanation
Indices: 24124011--24124088 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
24124001 GAGGCGGTAC
* * *
24124011 TTTATGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCA
1 TTTACGGTGTGCAGGGATGGATGGGTCGATTATATCCCCA
* *
24124051 TTTACGGTGTGCAGGGATGGGTGGGTCGATTTTATCCC
1 TTTACGGTGTGCAGGGATGGATGGGTCGATTATATCCC
24124089 TACATGGTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.15, C:0.14, G:0.35, T:0.36
Consensus pattern (40 bp):
TTTACGGTGTGCAGGGATGGATGGGTCGATTATATCCCCA
Found at i:24128009 original size:45 final size:43
Alignment explanation
Indices: 24127899--24128012 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 43
24127889 CTACCATTGC
*
24127899 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATAGAAGTTAT
1 AAATCTTATCT-CCTGAAGTTGCAGTGGAGTAGATAGAAGTGAT
* *
24127943 AGATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATCGAAGATGGA-
1 AAATCTTATCTCC-TGAAGTTGCAGTGGAGTAGATAGAAG-T-GAT
*
24127988 AAATCTTATCTCTCTAAAGTTGCAG
1 AAATCTTATCTC-CTGAAGTTGCAG
24128013 AACAACAGAT
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
43 2 0.03
44 35 0.57
45 22 0.36
46 2 0.03
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32
Consensus pattern (43 bp):
AAATCTTATCTCCTGAAGTTGCAGTGGAGTAGATAGAAGTGAT
Found at i:24128289 original size:44 final size:44
Alignment explanation
Indices: 24128220--24128390 Score: 231
Period size: 44 Copynumber: 3.9 Consensus size: 44
24128210 ATCATGGCAG
24128220 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCACGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCACGA
* *
24128264 ACCTTATCTCCCTGAAGTTGTAGTGGA--ACGAATTAAAGCCACGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTA-G-ATTAAAGCCACGA
* *
24128308 ATCTTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAGCTAC-A
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCACGA
* * *
24128351 GATCTTATCTCCATGAAGTTGCAGTAGAGTAGATTGAAGC
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGC
24128391 AACAATTCCT
Statistics
Matches: 112, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 108 0.96
45 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCACGA
Found at i:24129052 original size:12 final size:12
Alignment explanation
Indices: 24129024--24129065 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
24129014 CCAAAGGTTG
*
24129024 CATTTTTATTCT
1 CATTTTTATTTT
*
24129036 -GTTTTTATTTT
1 CATTTTTATTTT
24129047 CATTTTTATTTT
1 CATTTTTATTTT
*
24129059 TATTTTT
1 CATTTTT
24129066 TCTTGTTTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.76
Consensus pattern (12 bp):
CATTTTTATTTT
Found at i:24130100 original size:3 final size:3
Alignment explanation
Indices: 24130094--24130142 Score: 62
Period size: 3 Copynumber: 16.3 Consensus size: 3
24130084 TTATTATTAC
* * * *
24130094 TGT TGT TGT TGT TGT CGC TGT TGT TGT TGT TGT TGT TAT TGT TAT TGT
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
24130142 T
1 T
24130143 ATTATTGTTA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.04, C:0.04, G:0.29, T:0.63
Consensus pattern (3 bp):
TGT
Found at i:24130147 original size:15 final size:15
Alignment explanation
Indices: 24130117--24130154 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
24130107 GTCGCTGTTG
* *
24130117 TTGTTGTTGTTGTTA
1 TTGTTATTGTTATTA
24130132 TTGTTATTGTTATTA
1 TTGTTATTGTTATTA
24130147 TTGTTATT
1 TTGTTATT
24130155 ATTCTATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.13, C:0.00, G:0.18, T:0.68
Consensus pattern (15 bp):
TTGTTATTGTTATTA
Found at i:24138617 original size:41 final size:41
Alignment explanation
Indices: 24138553--24138673 Score: 113
Period size: 41 Copynumber: 2.9 Consensus size: 41
24138543 TTGCAATTAC
* *
24138553 ATATCAATGCCACAGTCCTAGACAGGGTCTTACACGAATCAA
1 ATATCGATGCCA-AGTCCCAGACAGGGTCTTACACGAATCAA
* * *
24138595 ATA-CGATGCCAATGTCCCAGACATGGTCTTACACATAATCAC
1 ATATCGATGCCAA-GTCCCAGACAGGGTCTTACAC-GAATCAA
*
24138637 ATATTGATGCCAACGTCCCA-AGC-GTGGTCTTACACGA
1 ATATCGATGCCAA-GTCCCAGA-CAG-GGTCTTACACGA
24138674 GAACACATAT
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
40 1 0.02
41 26 0.40
42 13 0.20
43 25 0.38
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.23
Consensus pattern (41 bp):
ATATCGATGCCAAGTCCCAGACAGGGTCTTACACGAATCAA
Found at i:24138665 original size:43 final size:43
Alignment explanation
Indices: 24138559--24138685 Score: 129
Period size: 43 Copynumber: 3.0 Consensus size: 43
24138549 TTACATATCA
* * * *
24138559 ATGCC-ACAGTCCTAGACAGGGTCTTACAC-GAATCAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACAGAATCACATATTG
* *
24138600 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACAGAATCACATATTG
*
24138643 ATGCCAACGTCCCA-AGCGTGGTCTTACACGAGAA-CACATATTG
1 ATGCCAACGTCCCAGA-CATGGTCTTACAC-AGAATCACATATTG
24138686 GAAATCCTAT
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
41 24 0.33
42 10 0.14
43 35 0.49
44 3 0.04
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACAGAATCACATATTG
Found at i:24143726 original size:4 final size:4
Alignment explanation
Indices: 24143717--24143741 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
24143707 CCGAAACTTG
24143717 AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA A
24143742 ATAAAGCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:24144639 original size:43 final size:42
Alignment explanation
Indices: 24144568--24144725 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
24144558 ATATGTGTTC
* * **
24144568 TCGTTTAAGACCACGTCTGGGATGTTGGCATCGATTTGTGAT
1 TCGTGTAAGACCACATCTGGGACATTGGCATCGATTTGTGAT
**
24144610 TACGTGTAAGACCATGTCTGGGACATTGGCATCG-TATT-TGAT
1 T-CGTGTAAGACCACATCTGGGACATTGGCATCGAT-TTGTGAT
* * *
24144652 TCGTGTAAGGCC-CTATCTGGGACAATGGCATCGATATGTGAT
1 TCGTGTAAGACCAC-ATCTGGGACATTGGCATCGATTTGTGAT
* * *
24144694 GGCATGTAAGACCACATCTGGGACGTTGGCAT
1 -TCGTGTAAGACCACATCTGGGACATTGGCAT
24144726 TGTACGATAT
Statistics
Matches: 95, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
41 28 0.29
42 12 0.13
43 54 0.57
44 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (42 bp):
TCGTGTAAGACCACATCTGGGACATTGGCATCGATTTGTGAT
Found at i:24150113 original size:21 final size:20
Alignment explanation
Indices: 24150085--24150124 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
24150075 TCGTACACGG
*
24150085 CCTAACCACATAGGCGTGTC
1 CCTAACCACACAGGCGTGTC
24150105 CCTAGACCACACAGGCGTGT
1 CCTA-ACCACACAGGCGTGT
24150125 GAGTCCTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.25, C:0.35, G:0.23, T:0.17
Consensus pattern (20 bp):
CCTAACCACACAGGCGTGTC
Found at i:24157991 original size:25 final size:25
Alignment explanation
Indices: 24157963--24158014 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
24157953 TTCAAAGTGA
24157963 TAAGTAAAATT-TGACTTCAAATTTT
1 TAAGT-AAATTATGACTTCAAATTTT
* *
24157988 TAAGTCAATTCATGACTTGAAATTTT
1 TAAGTAAATT-ATGACTTCAAATTTT
24158014 T
1 T
24158015 GTGTACAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 4 0.17
25 5 0.22
26 14 0.61
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.44
Consensus pattern (25 bp):
TAAGTAAATTATGACTTCAAATTTT
Found at i:24160057 original size:25 final size:24
Alignment explanation
Indices: 24160029--24160081 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
24160019 GGATACTCGG
*
24160029 AATAGAAATGCTCACATGAGCTATA
1 AATA-AAATGCTCACACGAGCTATA
* *
24160054 AATATAATGCTCACACGAGCTGTA
1 AATAAAATGCTCACACGAGCTATA
24160078 AATA
1 AATA
24160082 TGCTCATACG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 21 0.84
25 4 0.16
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.25
Consensus pattern (24 bp):
AATAAAATGCTCACACGAGCTATA
Found at i:24160087 original size:21 final size:24
Alignment explanation
Indices: 24160035--24160082 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
24160025 TCGGAATAGA
*
24160035 AATGCTCACATGAGCTATAAATAT
1 AATGCTCACACGAGCTATAAATAT
*
24160059 AATGCTCACACGAGCTGTAAATAT
1 AATGCTCACACGAGCTATAAATAT
24160083 GCTCATACGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.27
Consensus pattern (24 bp):
AATGCTCACACGAGCTATAAATAT
Found at i:24164396 original size:19 final size:19
Alignment explanation
Indices: 24164361--24164397 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
24164351 TAAAAAATAT
**
24164361 AATTTATATAAGGTTTTAC
1 AATTTATATAAAATTTTAC
24164380 AATTTATATAAAATTTTA
1 AATTTATATAAAATTTTA
24164398 ATTTTTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (19 bp):
AATTTATATAAAATTTTAC
Found at i:24164986 original size:19 final size:20
Alignment explanation
Indices: 24164962--24164999 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
24164952 AGTCTAAAGT
24164962 CTTCTTCAACAA-TTTTTTC
1 CTTCTTCAACAACTTTTTTC
24164981 CTTCTTCAACAACTTTTTT
1 CTTCTTCAACAACTTTTTT
24165000 GGTTTTAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (20 bp):
CTTCTTCAACAACTTTTTTC
Found at i:24165864 original size:17 final size:17
Alignment explanation
Indices: 24165818--24165869 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
24165808 ATCCGACAAA
*
24165818 GCCCAATAAATGATAAT
1 GCCCGATAAATGATAAT
**
24165835 GCTTGAAATAAATGATAAT
1 GCCCG--ATAAATGATAAT
24165854 GCCCGATAAATGATAA
1 GCCCGATAAATGATAA
24165870 ATGATAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 13 0.46
19 15 0.54
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.25
Consensus pattern (17 bp):
GCCCGATAAATGATAAT
Found at i:24173482 original size:19 final size:19
Alignment explanation
Indices: 24173458--24173495 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
24173448 AATAAAATAT
24173458 AAATAA-AATAAGTTGATCA
1 AAATAATAATAAG-TGATCA
*
24173477 AAATAATTATAAGTGATCA
1 AAATAATAATAAGTGATCA
24173496 TGAATTAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.55, C:0.05, G:0.11, T:0.29
Consensus pattern (19 bp):
AAATAATAATAAGTGATCA
Found at i:24173682 original size:43 final size:43
Alignment explanation
Indices: 24173595--24173682 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
24173585 ATCATGGAGA
* *** * *
24173595 ATAAATTTGATTGTCGATAAAAAGTTTTATCACTTTGGGCAAG
1 ATAAATTTGATCGTCGATAAAAAGAACTAACACTTTGAGCAAG
* *
24173638 ATAAATTTGATCGTCGATAAAATGAACTAACACTTTGAGTAAG
1 ATAAATTTGATCGTCGATAAAAAGAACTAACACTTTGAGCAAG
24173681 AT
1 AT
24173683 CATGCTAATA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (43 bp):
ATAAATTTGATCGTCGATAAAAAGAACTAACACTTTGAGCAAG
Found at i:24179806 original size:37 final size:37
Alignment explanation
Indices: 24179765--24179836 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
24179755 ATGCTTAGAG
24179765 AATAAATGAAGATCACCCTTCAATGTAGCATGATCCA
1 AATAAATGAAGATCACCCTTCAATGTAGCATGATCCA
* *
24179802 AATAAATGAGGATTACCCTTCAATGTAGCATGATC
1 AATAAATGAAGATCACCCTTCAATGTAGCATGATC
24179837 TAATCTCCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.26
Consensus pattern (37 bp):
AATAAATGAAGATCACCCTTCAATGTAGCATGATCCA
Found at i:24184974 original size:18 final size:18
Alignment explanation
Indices: 24184946--24184990 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
24184936 AATTTGGGCT
*
24184946 GTGTGAG-CCACACGGGC
1 GTGTGAGCCCACACGAGC
* *
24184963 GTGTGGGCCCACATGAGC
1 GTGTGAGCCCACACGAGC
24184981 GTGTGAGCCC
1 GTGTGAGCCC
24184991 GATTTGTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.16, C:0.29, G:0.40, T:0.16
Consensus pattern (18 bp):
GTGTGAGCCCACACGAGC
Found at i:24186728 original size:17 final size:17
Alignment explanation
Indices: 24186686--24186718 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
24186676 AGTTAAAATA
24186686 CAATGTTGAGATTATTG
1 CAATGTTGAGATTATTG
24186703 CAATGTTGAGATTATT
1 CAATGTTGAGATTATT
24186719 TGCCATTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.42
Consensus pattern (17 bp):
CAATGTTGAGATTATTG
Found at i:24189608 original size:16 final size:17
Alignment explanation
Indices: 24189576--24189608 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
24189566 TACATTACGT
24189576 TTTTTAAAAGGAAAATTA
1 TTTTTAAAA-GAAAATTA
24189594 TTTTTAAAA-AAAATT
1 TTTTTAAAAGAAAATT
24189609 GGAAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (17 bp):
TTTTTAAAAGAAAATTA
Found at i:24196485 original size:18 final size:17
Alignment explanation
Indices: 24196464--24196502 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
24196454 AGGAAAAAGG
*
24196464 AAAATATAAA-AAAATTT
1 AAAA-ATAAAGAAAAATT
24196481 AAAAATAAAGAAAAATT
1 AAAAATAAAGAAAAATT
24196498 AAAAA
1 AAAAA
24196503 CTTTTCTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (17 bp):
AAAAATAAAGAAAAATT
Found at i:24196747 original size:20 final size:19
Alignment explanation
Indices: 24196702--24196753 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
24196692 TTTTCACAAT
24196702 AAAATTA-AAAAAAATTAC
1 AAAATTATAAAAAAATTAC
* *
24196720 AATCATTATAAAAAAATTCC
1 AA-AATTATAAAAAAATTAC
24196740 AGAAATTATGAAAA
1 A-AAATTAT-AAAA
24196754 TATGTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
18 2 0.07
19 4 0.15
20 16 0.59
21 5 0.19
ACGTcount: A:0.63, C:0.08, G:0.04, T:0.25
Consensus pattern (19 bp):
AAAATTATAAAAAAATTAC
Found at i:24196987 original size:17 final size:16
Alignment explanation
Indices: 24196974--24197003 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
24196964 GAGATTTGAG
24196974 TTCATTTTAAATTTAA
1 TTCATTTTAAATTTAA
24196990 TT-ATTTTAAATTTA
1 TTCATTTTAAATTTA
24197004 GATAATTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 12 0.86
16 2 0.14
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (16 bp):
TTCATTTTAAATTTAA
Found at i:24197771 original size:18 final size:18
Alignment explanation
Indices: 24197744--24197778 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24197734 AACAGAATAA
24197744 TTTAAAAATACTATATAT
1 TTTAAAAATACTATATAT
* *
24197762 TTTAAGAATATTATATA
1 TTTAAAAATACTATATA
24197779 AAAATCTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (18 bp):
TTTAAAAATACTATATAT
Found at i:24201538 original size:137 final size:137
Alignment explanation
Indices: 24201305--24201575 Score: 479
Period size: 137 Copynumber: 2.0 Consensus size: 137
24201295 CCCATTCAGC
*
24201305 TAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCA
1 TAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCACCTTATTCA
* * * *
24201370 GATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGTAACATCAGTAGACATATGCAAGCCC
66 GATAACAGTATGGACCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCCC
24201435 ATTTGGG
131 ATTTGGG
* *
24201442 TAACAGTGGTACTGGGCCAGAGCCCTTTTTAGATTACAATAAACTGGGTCTTAGCACCTTATTCA
1 TAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCACCTTATTCA
24201507 GATAACAGTATGGACCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCCC
66 GATAACAGTATGGACCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCCC
24201572 ATTT
131 ATTT
24201576 AGGGAGACTA
Statistics
Matches: 127, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
137 127 1.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.26
Consensus pattern (137 bp):
TAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCACCTTATTCA
GATAACAGTATGGACCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCCC
ATTTGGG
Found at i:24201863 original size:25 final size:27
Alignment explanation
Indices: 24201826--24201878 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
24201816 TCAAACATGC
24201826 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
24201852 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
24201878 A
1 A
24201879 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:24203395 original size:26 final size:26
Alignment explanation
Indices: 24203363--24203467 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
24203353 AATGCCCATT
*
24203363 ATGGAACATTTACCTAAACCATTATC
1 ATGGAACATTTACCTAACCCATTATC
24203389 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
* *
24203415 ATGGAATATTTACCTAATCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
24203441 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
24203467 A
1 A
24203468 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATGGAACATTTACCTAACCCATTATC
Found at i:24209648 original size:137 final size:137
Alignment explanation
Indices: 24209469--24209755 Score: 493
Period size: 137 Copynumber: 2.1 Consensus size: 137
24209459 CATTGGGCCT
**
24209469 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* * *
24209534 AGCCCCTTATTCAGATAACAGTATAGCCCATAGGCCCATTTCAAAATACATGCAACATTAGTAAA
66 AGCCCATTATTCAGATAACAGTATAGCCCATAGGCCAATTTCAAAATACATGCAACATCAGTAAA
24209599 CATATGC
131 CATATGC
* *
24209606 AAGCCCATTTGGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAATTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
24209671 AGCTCATTATTCAGATAACAGTATGGCCCATAGGCCAATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCATTATTCAGATAACAGTATAGCCCATAGGCCAATTTCAAAATACATGCAACATCAGTAAA
24209736 CATATGC
131 CATATGC
24209743 AAGCCCATTTGGG
1 AAGCCCATTTGGG
24209756 GAGACTACTC
Statistics
Matches: 141, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
137 141 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCATTATTCAGATAACAGTATAGCCCATAGGCCAATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:24210040 original size:25 final size:27
Alignment explanation
Indices: 24210003--24210055 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
24209993 TCAAACATGC
24210003 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* **
24210029 ATTTCGGT-AATTTGTCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
24210055 A
1 A
24210056 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:24211572 original size:26 final size:26
Alignment explanation
Indices: 24211541--24211648 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
24211531 TGAAATGCCC
*
24211541 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
24211567 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
24211593 ATCATGTAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
24211619 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
24211645 ATCA
1 ATCA
24211649 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:24212870 original size:25 final size:25
Alignment explanation
Indices: 24212838--24212918 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
24212828 TAAAATTCAC
24212838 TATTAAATATTATATTTTTATGTAT
1 TATTAAATATTATATTTTTATGTAT
* *
24212863 TATTAAATGTTTATATTATTT-GGTA-
1 TATTAAAT-ATTATATT-TTTATGTAT
* *
24212888 TAATACAATATCATATTTTTTAT-TAT
1 TATTA-AATATTATA-TTTTTATGTAT
24212914 TATTA
1 TATTA
24212919 TCTTATCTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 11
0.70 0.11 0.18
Matches are distributed among these distances:
25 21 0.49
26 19 0.44
27 3 0.07
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (25 bp):
TATTAAATATTATATTTTTATGTAT
Found at i:24225271 original size:205 final size:205
Alignment explanation
Indices: 24224913--24226043 Score: 1919
Period size: 205 Copynumber: 5.5 Consensus size: 205
24224903 ATGGTTCGGT
* * * *
24224913 ATTCTTGTGCTTACAAGGAACAAACCAAAGACATAGCTGATTTGGGTTTCACGTGTTTACG-TCG
1 ATTCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGAT-G
* *
24224977 AAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGAGAGTAAATCGAAGTCTGGCATCTCC
65 AAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCC
*
24225042 ACTTCAACGGGGAGTAGGTACATAGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAA
130 ACTTCAACGGGGAGTAGATACATAGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAA
24225107 GATGATTTAGC
195 GATGATTTAGC
* * * * *
24225118 ATTCTTGTGCATACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTAA
1 ATTCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGA
*
24225183 AGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCG
66 AGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCA
*
24225248 CTTCAACGGGGAGCAGATACATAGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAG
131 CTTCAACGGGGAGTAGATACATAGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAG
24225313 ATGATTTAGC
196 ATGATTTAGC
* * *
24225323 ATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTGATTTGGCTTTAACGTGTTTACGATGA
1 ATTCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGA
*
24225388 AGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGAAAATCGAAGTCTGGCATCTCCA
66 AGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCA
* ** *
24225453 CTTCAACGGAGAACAGATACATAGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAC
131 CTTCAACGGGGAGTAGATACATAGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAG
24225518 ATGATTTAGC
196 ATGATTTAGC
24225528 A-TCTTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATG
1 ATTC-TTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATG
*
24225592 AAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCC
65 AAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCC
* *
24225657 ACTTCAACGGGGAGTAGATACATAGCAGATCTCACCTTTAGATGTTTATACTGAAGTAGATCCAA
130 ACTTCAACGGGGAGTAGATACATAGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAA
24225722 GATGATTTAGC
195 GATGATTTAGC
*
24225733 A-TCTTTGTGCTTACAAGGAGCAAATCGAAGACATAGATGATTTGGCTTTCACGTGTTTACGATG
1 ATTC-TTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATG
*
24225797 AAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGTATCTCC
65 AAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCC
* *
24225862 ACTTCAACAGGGAGTAGATACATAGCAGATCTCACCTGT-AGATGTTTATACTGAAGTAGATCCA
130 ACTTCAACGGGGAGTAGATACATAGCAGATCTCACCT-TCAGATGTTTATACTGAAGCAGATCCA
24225926 AGATGATTTAGC
194 AGATGATTTAGC
* *
24225938 ATCCTTGTGCTTACAAAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGA
1 ATTCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGA
24226003 AGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 AGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
24226044 ACAAGTCAAA
Statistics
Matches: 878, Mismatches: 44, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
204 1 0.00
205 874 1.00
206 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (205 bp):
ATTCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGA
AGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCA
CTTCAACGGGGAGTAGATACATAGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAG
ATGATTTAGC
Found at i:24227785 original size:9 final size:8
Alignment explanation
Indices: 24227771--24227959 Score: 53
Period size: 8 Copynumber: 23.4 Consensus size: 8
24227761 TATTTTTAAT
24227771 TATTATATA
1 TATTAT-TA
24227780 TATTATTA
1 TATTATTA
24227788 TATTATTTA
1 TATTA-TTA
24227797 TATT-TTCAA
1 TATTATT--A
*
24227806 AATT-TGTA
1 TATTAT-TA
*
24227814 AATTATTA
1 TATTATTA
24227822 TTATATATTA
1 -TAT-TATTA
24227832 TATT-TTA
1 TATTATTA
24227839 -ACTTA-TA
1 TA-TTATTA
*
24227846 TA-TATTT
1 TATTATTA
24227853 TATTATT-
1 TATTATTA
24227860 TATTTATTTA
1 TA-TTA-TTA
24227870 TATTA-TA
1 TATTATTA
* *
24227877 CATTATTT
1 TATTATTA
**
24227885 TAAAACTTA
1 TATTA-TTA
* *
24227894 CATTTTTA
1 TATTATTA
24227902 TATTA-TA
1 TATTATTA
24227909 TATTA-TA
1 TATTATTA
*
24227916 AATTATT-
1 TATTATTA
24227923 TCATTTATTA
1 T-A-TTATTA
*
24227933 CATTATTA
1 TATTATTA
24227941 T-TT-TTA
1 TATTATTA
24227947 TATACTATTA
1 TAT--TATTA
24227957 TAT
1 TAT
24227960 ACTATCTATT
Statistics
Matches: 136, Mismatches: 19, Indels: 49
0.67 0.09 0.24
Matches are distributed among these distances:
6 7 0.05
7 36 0.26
8 40 0.29
9 39 0.29
10 14 0.10
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.59
Consensus pattern (8 bp):
TATTATTA
Found at i:24231599 original size:27 final size:28
Alignment explanation
Indices: 24231543--24231612 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
24231533 AAATTTGTAC
24231543 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
24231571 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
24231598 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
24231613 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:24231623 original size:27 final size:27
Alignment explanation
Indices: 24231543--24231624 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
24231533 AAATTTGTAC
* *
24231543 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
24231571 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
24231598 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
24231625 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:24239360 original size:27 final size:28
Alignment explanation
Indices: 24239304--24239373 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
24239294 AAATTTGTAC
24239304 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
24239332 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
24239359 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
24239374 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:24239384 original size:27 final size:27
Alignment explanation
Indices: 24239304--24239385 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
24239294 AAATTTGTAC
* *
24239304 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
24239332 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
24239359 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
24239386 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:24243973 original size:28 final size:28
Alignment explanation
Indices: 24243941--24244039 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
24243931 GCAATAAGCC
*
24243941 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
24243969 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
24243997 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
24244026 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24244040 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:24245403 original size:27 final size:27
Alignment explanation
Indices: 24245357--24245684 Score: 405
Period size: 27 Copynumber: 12.1 Consensus size: 27
24245347 GGGCTGTCAC
* *
24245357 ATCGAGGGTAAAACGATAATTATGTAA
1 ATCGAGGGTAAAACGGTAATTCTGTAA
* * *
24245384 ATTTG-GGGTAAAATGGTAATTATGTAA
1 A-TCGAGGGTAAAACGGTAATTCTGTAA
* * *
24245411 AT-TAGGGGTAAAACAGTAATTCTATAA
1 ATCGA-GGGTAAAACGGTAATTCTGTAA
**
24245438 ATCGAGGGTAAAATAGTAATTCTGTAA
1 ATCGAGGGTAAAACGGTAATTCTGTAA
*
24245465 ATTGAGGGTAAAACGGTAATTCTGTAA
1 ATCGAGGGTAAAACGGTAATTCTGTAA
*
24245492 ATCGAGGGTAAAACGGTAATTTTAG-AA
1 ATCGAGGGTAAAACGGTAATTCT-GTAA
*
24245519 ATCGAGGGTAAAACGGTAATTCTATAA
1 ATCGAGGGTAAAACGGTAATTCTGTAA
*
24245546 ATCGAGGGTAAAACAGTAATTCTGTAA
1 ATCGAGGGTAAAACGGTAATTCTGTAA
* **
24245573 ATCAAGGGTAAAACAATAATTCTGTAA
1 ATCGAGGGTAAAACGGTAATTCTGTAA
24245600 A-CTGAGGGTAAAACGGTAATTCTGTAA
1 ATC-GAGGGTAAAACGGTAATTCTGTAA
**
24245627 ATCGAGGGTAAAATAGTAATTCTGTAA
1 ATCGAGGGTAAAACGGTAATTCTGTAA
24245654 A-CTGAGGGTAAAACGGTAATTCTGTAA
1 ATC-GAGGGTAAAACGGTAATTCTGTAA
24245681 ATCG
1 ATCG
24245685 GGAGTACTTT
Statistics
Matches: 262, Mismatches: 29, Indels: 20
0.84 0.09 0.06
Matches are distributed among these distances:
26 3 0.01
27 253 0.97
28 6 0.02
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
ATCGAGGGTAAAACGGTAATTCTGTAA
Found at i:24248545 original size:31 final size:31
Alignment explanation
Indices: 24248504--24248567 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
24248494 CCTTTTCATA
*
24248504 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
24248535 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
24248566 TT
1 TT
24248568 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:24248814 original size:23 final size:23
Alignment explanation
Indices: 24248758--24248944 Score: 272
Period size: 24 Copynumber: 8.0 Consensus size: 23
24248748 TGCTTTATCA
*
24248758 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
24248782 TAATAACTGGGGCAAAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
24248806 TATAACT-GGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
* *
24248828 AATAACTGGGGCGTAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
24248851 TGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
24248875 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
24248898 TGATAACTGGGGCATAAGCCC-TT
1 T-ATAACTGGGGCATAAGCCCTTT
24248921 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
24248944 T
1 T
24248945 TCACTTCCTC
Statistics
Matches: 150, Mismatches: 7, Indels: 13
0.88 0.04 0.08
Matches are distributed among these distances:
22 39 0.26
23 49 0.33
24 50 0.33
25 12 0.08
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:24248871 original size:69 final size:70
Alignment explanation
Indices: 24248759--24248944 Score: 272
Period size: 69 Copynumber: 2.7 Consensus size: 70
24248749 GCTTTATCAT
* *
24248759 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTATAACT-GGGCATAAG
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAG
24248822 CCC-TTTA
63 CCCTTTTA
*
24248829 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCC
*
24248894 CTTTTG
65 CTTTTA
24248900 ATAACTGGGGCATAAGCCC-TTTATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTT
24248945 TCACTTCCTC
Statistics
Matches: 108, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
69 60 0.56
70 27 0.25
71 21 0.19
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (70 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCC
TTTTA
Found at i:24248882 original size:47 final size:47
Alignment explanation
Indices: 24248759--24248944 Score: 281
Period size: 47 Copynumber: 4.0 Consensus size: 47
24248749 GCTTTATCAT
* *
24248759 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTG
* *
24248807 ATAACT-GGGCATAAGCCCTTTAATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
24248853 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
24248900 ATAACTGGGGCATAAGCCC-TTTATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTT
24248945 TCACTTCCTC
Statistics
Matches: 129, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
45 21 0.16
46 40 0.31
47 62 0.48
48 6 0.05
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
Found at i:24249016 original size:9 final size:9
Alignment explanation
Indices: 24249002--24249078 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
24248992 ATCTCGTGTG
24249002 CATATCATA
1 CATATCATA
*
24249011 CATATCATGTG
1 CATATCA--TA
24249022 CATATCATA
1 CATATCATA
* *
24249031 CATGTCATGTG
1 CATATCA--TA
24249042 CATATCATA
1 CATATCATA
*
24249051 CATATCATGTG
1 CATATCA--TA
24249062 CATATCATA
1 CATATCATA
24249071 CATATCAT
1 CATATCAT
24249079 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:24249021 original size:20 final size:20
Alignment explanation
Indices: 24248998--24249080 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
24248988 GAACATCTCG
24248998 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
24249018 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
24249038 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
24249058 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
24249078 TGT
1 TGT
24249081 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:24249027 original size:11 final size:11
Alignment explanation
Indices: 24248998--24249069 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
24248988 GAACATCTCG
24248998 TGTGCATATCA
1 TGTGCATATCA
*
24249009 --TACATATCA
1 TGTGCATATCA
24249018 TGTGCATATCA
1 TGTGCATATCA
* *
24249029 --TACATGTCA
1 TGTGCATATCA
24249038 TGTGCATATCA
1 TGTGCATATCA
*
24249049 --TACATATCA
1 TGTGCATATCA
24249058 TGTGCATATCA
1 TGTGCATATCA
24249069 T
1 T
24249070 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:24249163 original size:25 final size:25
Alignment explanation
Indices: 24249117--24249164 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
24249107 ATATATAAAC
* * * *
24249117 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
24249142 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
24249165 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:24250418 original size:27 final size:27
Alignment explanation
Indices: 24250398--24250875 Score: 579
Period size: 27 Copynumber: 17.7 Consensus size: 27
24250388 AGGGTATTTT
*
24250398 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
24250425 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
24250452 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
24250479 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
24250506 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
24250533 AATAATTATGTAAATCTG-GGGTAAAAT
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* * *
24250560 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
24250587 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
24250614 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
24250641 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
24250668 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
24250695 GGTAATTTTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
24250722 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
24250749 AATAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
24250776 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
24250803 AGTAATTCAGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
24250830 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
24250857 GGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
24250876 AGTACTTTGG
Statistics
Matches: 395, Mismatches: 46, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
26 3 0.01
27 387 0.98
28 5 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:24252010 original size:49 final size:50
Alignment explanation
Indices: 24251950--24252079 Score: 174
Period size: 49 Copynumber: 2.6 Consensus size: 50
24251940 TGACATGTGT
* *
24251950 CAGTGTAAGACCTGTCTAGGACATGGCATCAAAACT-AATAGATGAAAAC
1 CAGTGTAAGACCTGTCTGGGACATGGTATCAAAACTCAATAGATGAAAAC
** * * **
24251999 CAGTGTAAGACCTGTCTGGGACATGGTATC-AGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGTATCAAAACTCAATAGATGAAAAC
24252048 CAGTGTAAGACCTGTCTGGGACATGGTATCAA
1 CAGTGTAAGACCTGTCTGGGACATGGTATCAA
24252080 CTTAGTTGTG
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
48 3 0.04
49 67 0.94
50 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (50 bp):
CAGTGTAAGACCTGTCTGGGACATGGTATCAAAACTCAATAGATGAAAAC
Found at i:24255960 original size:61 final size:63
Alignment explanation
Indices: 24255818--24255960 Score: 138
Period size: 60 Copynumber: 2.3 Consensus size: 63
24255808 TCAAGCTTTA
*
24255818 CTGGGCC-TAAGCCCTATT-CAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCAT-AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAAT
* * * * *
24255880 TTGGGCCATAGTCCC--TTACAG-TATCAGAG-TACACTGGGCC-TAGCCCATGTTAGTATCAAT
1 CTGGGCCATAG-CCCTATTACAGAAATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAAT
* *
24255940 CTGGGTCGTAGCCCTATTACA
1 CTGGGCCATAGCCCTATTACA
24255961 AGTCGAGATA
Statistics
Matches: 66, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
59 3 0.05
60 26 0.39
61 22 0.33
62 11 0.17
63 4 0.06
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (63 bp):
CTGGGCCATAGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAAT
Found at i:24258874 original size:15 final size:16
Alignment explanation
Indices: 24258847--24258876 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
24258837 TATAGTATCG
24258847 TATCTTGGGATTTCTC
1 TATCTTGGGATTTCTC
24258863 TATCTT-GGATTTCT
1 TATCTTGGGATTTCT
24258877 TTACTTTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.13, C:0.17, G:0.17, T:0.53
Consensus pattern (16 bp):
TATCTTGGGATTTCTC
Found at i:24275167 original size:27 final size:27
Alignment explanation
Indices: 24275137--24275224 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
24275127 CAAAACAGTC
24275137 ATTTTACCCTACAAGGGTATTTCGATA
1 ATTTTACCCTACAAGGGTATTTCGATA
* *
24275164 ATTTTACACTACAAGGGTATTTCGGTA
1 ATTTTACCCTACAAGGGTATTTCGATA
** * *
24275191 ATTTTA-CAAATTAGGGGTATTTCGATA
1 ATTTTACCCTA-CAAGGGTATTTCGATA
24275218 ATTTTAC
1 ATTTTAC
24275225 AAACCGAGGT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.02
27 50 0.98
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.40
Consensus pattern (27 bp):
ATTTTACCCTACAAGGGTATTTCGATA
Found at i:24275209 original size:54 final size:53
Alignment explanation
Indices: 24275151--24275553 Score: 359
Period size: 54 Copynumber: 7.4 Consensus size: 53
24275141 TACCCTACAA
* * *
24275151 GGGTATTTCGATAATTTTACACTACAAGGGTATTTCGGTAATTTTACAAATTAG
1 GGGTATTTCGATAATTTTACA-AACAAGGGTATTTCAGTAATTTTACAAATTGG
* * * * *
24275205 GGGTATTTCGATAATTTTACAAAC-CGAGGTATTTTAGTAAATTTATAAACTGG
1 GGGTATTTCGATAATTTTACAAACAAG-GGTATTTCAGTAATTTTACAAATTGG
* *
24275258 GGGTATTTCTG-TAATTTTACACTACAAGGGTATTTCAGTAATTTTACAAACTGG
1 GGGTATTTC-GATAATTTTACA-AACAAGGGTATTTCAGTAATTTTACAAATTGG
* * * ** * *
24275312 GTGTATTTTGGTAATTTTACAAATCGGGGGTATTTTAGTAATTTTACAAATCGG
1 GGGTATTTCGATAATTTTACAAA-CAAGGGTATTTCAGTAATTTTACAAATTGG
* * ** **
24275366 GGGTATTTCAATAATTTTAAAAATTGAGGGTATTTTGGTAATTTTACAAATT-G
1 GGGTATTTCGATAATTTTACAAA-CAAGGGTATTTCAGTAATTTTACAAATTGG
* * **
24275419 GGGTATTTCGGTAATTTTACAAAC-TGGAGTATTTCAGTAATTTTACACTATAAGGG
1 GGGTATTTCGATAATTTTACAAACAAGG-GTATTTCAGTAATTTTACA--A-ATTGG
* * *
24275475 TAGGGTATTTCGATACTTTTACAAACCAGGGGTATTTC-GATAATTTTACAAACTGG
1 --GGGTATTTCGATAATTTTACAAA-CAAGGGTATTTCAG-TAATTTTACAAATTGG
24275531 GGGTATTTCTG-TAATTTTACAAA
1 GGGTATTTC-GATAATTTTACAAA
24275554 TGAAGGTCTT
Statistics
Matches: 287, Mismatches: 45, Indels: 34
0.78 0.12 0.09
Matches are distributed among these distances:
51 2 0.01
52 18 0.06
53 64 0.22
54 153 0.53
55 3 0.01
56 4 0.01
57 1 0.00
58 22 0.08
59 18 0.06
60 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
GGGTATTTCGATAATTTTACAAACAAGGGTATTTCAGTAATTTTACAAATTGG
Found at i:24275225 original size:27 final size:27
Alignment explanation
Indices: 24275151--24275554 Score: 249
Period size: 27 Copynumber: 14.9 Consensus size: 27
24275141 TACCCTACAA
* * *
24275151 GGGTATTTCGATAATTTTAC-ACTACAA
1 GGGTATTTCGATAATTTTACAAAT-TAG
*
24275178 GGGTATTTCGGTAATTTTACAAATTAG
1 GGGTATTTCGATAATTTTACAAATTAG
**
24275205 GGGTATTTCGATAATTTTACAAA-CCG
1 GGGTATTTCGATAATTTTACAAATTAG
* * * * * *
24275231 AGGTATTT-TAGTAAATTTATAAACTGG
1 GGGTATTTCGA-TAATTTTACAAATTAG
* * *
24275258 GGGTATTTCTG-TAATTTTAC-ACTACAA
1 GGGTATTTC-GATAATTTTACAAAT-TAG
*
24275285 GGGTATTTC-AGTAATTTTACAAACT-G
1 GGGTATTTCGA-TAATTTTACAAATTAG
* * **
24275311 GGTGTATTTTGGTAATTTTACAAATCGG
1 GG-GTATTTCGATAATTTTACAAATTAG
* **
24275339 GGGTATTT-TAGTAATTTTACAAATCGG
1 GGGTATTTCGA-TAATTTTACAAATTAG
* *
24275366 GGGTATTTCAATAATTTTAAAAATT-G
1 GGGTATTTCGATAATTTTACAAATTAG
* *
24275392 AGGGTATTTTGGTAATTTTACAAATT-G
1 -GGGTATTTCGATAATTTTACAAATTAG
* *
24275419 GGGTATTTCGGTAATTTTACAAACT-G
1 GGGTATTTCGATAATTTTACAAATTAG
* * *
24275445 GAGTATTTC-AGTAATTTTACACTATAAGGG
1 GGGTATTTCGA-TAATTTTACA-AATTA--G
* **
24275475 TAGGGTATTTCGATACTTTTACAAACCAG
1 --GGGTATTTCGATAATTTTACAAATTAG
* *
24275504 GGGTATTTCGATAATTTTACAAACTGG
1 GGGTATTTCGATAATTTTACAAATTAG
24275531 GGGTATTTCTG-TAATTTTACAAAT
1 GGGTATTTC-GATAATTTTACAAAT
24275555 GAAGGTCTTA
Statistics
Matches: 298, Mismatches: 55, Indels: 48
0.74 0.14 0.12
Matches are distributed among these distances:
25 1 0.00
26 64 0.21
27 203 0.68
28 8 0.03
29 1 0.00
30 1 0.00
31 2 0.01
32 17 0.06
33 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATTAG
Found at i:24275382 original size:134 final size:131
Alignment explanation
Indices: 24275137--24275551 Score: 422
Period size: 134 Copynumber: 3.1 Consensus size: 131
24275127 CAAAACAGTC
* * *
24275137 ATTTTACCCTACAAGGGTATTTCGATAATTTTACACTACAAGGGTATTTCGGTAATTTTACAAAT
1 ATTTTACACTACAAGGGTATTTCG-TAATTTTACA-AAC-TGGGTATTTCGGTAATTTTACAAAT
** * * * * * *
24275202 TAGGGGTATTTCGATAATTTTACAAACCGAGGTATTTTAGTAAATTTATAAACTGGGGGTATTTC
63 CGGGGGTATTTCGATAATTTTACAAACAGGGGTATTTCAATAATTTTAAAAACTGGGGGTATTTC
24275267 TGTA
128 TGTA
*
24275271 ATTTTACACTACAAGGGTATTTCAGTAATTTTACAAACTGGGTGTATTTTGGTAATTTTACAAAT
1 ATTTTACACTACAAGGGTATTTC-GTAATTTTACAAACT-GG-GTATTTCGGTAATTTTACAAAT
* * * *
24275336 CGGGGGTATTT-TAGTAATTTTACAAATCGGGGGTATTTCAATAATTTTAAAAATTGAGGGTATT
63 CGGGGGTATTTCGA-TAATTTTACAAA-CAGGGGTATTTCAATAATTTTAAAAACTGGGGGTATT
24275400 T-TGGTA
126 TCT-GTA
* *** *
24275406 ATTTTACA-AATTGGGGTATTTCGGTAATTTTACAAACTGGAGTATTTCAGTAATTTTACACTAT
1 ATTTTACACTACAAGGGTATTTC-GTAATTTTACAAACTGG-GTATTTCGGTAATTTTACA--A-
** * * *
24275470 AAGGGTAGGGTATTTCGATACTTTTACAAACCAGGGGTATTTCGATAATTTTACAAACTGGGGGT
61 ATCGG--GGGTATTTCGATAATTTTACAAA-CAGGGGTATTTCAATAATTTTAAAAACTGGGGGT
24275535 ATTTCTGTA
123 ATTTCTGTA
24275544 ATTTTACA
1 ATTTTACA
24275552 AATGAAGGTC
Statistics
Matches: 235, Mismatches: 33, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
133 24 0.10
134 100 0.43
135 43 0.18
136 3 0.01
138 63 0.27
139 2 0.01
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.40
Consensus pattern (131 bp):
ATTTTACACTACAAGGGTATTTCGTAATTTTACAAACTGGGTATTTCGGTAATTTTACAAATCGG
GGGTATTTCGATAATTTTACAAACAGGGGTATTTCAATAATTTTAAAAACTGGGGGTATTTCTGT
A
Found at i:24283053 original size:24 final size:24
Alignment explanation
Indices: 24282961--24283055 Score: 95
Period size: 24 Copynumber: 3.9 Consensus size: 24
24282951 AAGCTATGAT
* *
24282961 CAGTAAGCTCCTCCTGAGCTGATGAA
1 CAGTAAGCTCTTAC-GAGCTGA-GAA
*
24282987 CAGTAAGCTC-TATCGAGC-AAGAAA
1 CAGTAAGCTCTTA-CGAGCTGAG-AA
* *
24283011 TAGTAAGCTCTGACGAGCTGAGAA
1 CAGTAAGCTCTTACGAGCTGAGAA
24283035 CAGTAAGCTCTTACGAGCTGA
1 CAGTAAGCTCTTACGAGCTGA
24283056 TATATTCGTA
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
23 1 0.02
24 38 0.66
25 8 0.14
26 11 0.19
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (24 bp):
CAGTAAGCTCTTACGAGCTGAGAA
Found at i:24288339 original size:15 final size:15
Alignment explanation
Indices: 24288319--24288348 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24288309 ACACTAAAAC
24288319 TTCGATAAATGAATA
1 TTCGATAAATGAATA
*
24288334 TTCGATAAATTAATA
1 TTCGATAAATGAATA
24288349 ATCTTAGTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.37
Consensus pattern (15 bp):
TTCGATAAATGAATA
Found at i:24290360 original size:26 final size:27
Alignment explanation
Indices: 24290326--24290382 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
24290316 AAATATTCTC
*
24290326 TAAAATAAT-AAATGTTAATTTATCGA
1 TAAAATAATAAAATATTAATTTATCGA
* *
24290352 TAAATTAATAAAATATTCATTTATCGA
1 TAAAATAATAAAATATTAATTTATCGA
24290379 TAAA
1 TAAA
24290383 CAAATAACCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 8 0.30
27 19 0.70
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (27 bp):
TAAAATAATAAAATATTAATTTATCGA
Found at i:24291837 original size:24 final size:24
Alignment explanation
Indices: 24291810--24291856 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
24291800 TTGATAAATT
24291810 TTAAATTAAAAAAAT-ATTTATTTG
1 TTAAA-TAAAAAAATCATTTATTTG
24291834 TTAAATAAAAAAATCATTTATTT
1 TTAAATAAAAAAATCATTTATTT
24291857 TTGGTCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (24 bp):
TTAAATAAAAAAATCATTTATTTG
Found at i:24294853 original size:16 final size:16
Alignment explanation
Indices: 24294828--24294865 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
24294818 ATCCTTTCAA
*
24294828 AATAGATATTTACACC
1 AATAGTTATTTACACC
24294844 AATAGTTATTTACACC
1 AATAGTTATTTACACC
24294860 AATAGT
1 AATAGT
24294866 GATTCATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.34
Consensus pattern (16 bp):
AATAGTTATTTACACC
Found at i:24299245 original size:5 final size:5
Alignment explanation
Indices: 24299235--24299261 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
24299225 TTAAAATAAT
24299235 AATTA AATTA AATTA AATTA AATTA AA
1 AATTA AATTA AATTA AATTA AATTA AA
24299262 GTTAGAACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (5 bp):
AATTA
Found at i:24308935 original size:40 final size:40
Alignment explanation
Indices: 24308811--24308941 Score: 192
Period size: 40 Copynumber: 3.3 Consensus size: 40
24308801 GCGGGTCTCT
* * *
24308811 AGCCCAGATAATATTCCAGCACAAAGCCTGCGGGTCTTTA
1 AGCCCAGATAACATTCCAGCACGAAGCCTGCGGGTTTTTA
24308851 AG-CCAGGATAACATTCCAGCACGAAGCCTGCGGGTTTTTA
1 AGCCCA-GATAACATTCCAGCACGAAGCCTGCGGGTTTTTA
* * *
24308891 AGCCCGGATAACATTCCAGTACGAAGCCTGCAGGTTTTTA
1 AGCCCAGATAACATTCCAGCACGAAGCCTGCGGGTTTTTA
24308931 AGCCCAGATAA
1 AGCCCAGATAA
24308942 TACCTCAAGT
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.04
40 77 0.94
41 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCCCAGATAACATTCCAGCACGAAGCCTGCGGGTTTTTA
Found at i:24316719 original size:40 final size:40
Alignment explanation
Indices: 24316613--24316996 Score: 479
Period size: 40 Copynumber: 9.7 Consensus size: 40
24316603 TTCTAGCACC
** * * * *
24316613 AGCCTGCGGGAATTTAAACCC-GATATA-ATACCAGCTCGT
1 AGCCTGCGGGTCTTTAAGCCCGGATA-ACATTCCAGCACGA
* *
24316652 AGCCTGGGGGTCTCTAA-CCCGGATAACATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
*
24316691 AACCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
* * *
24316731 AGCCTACGGGTCTTTAAGCCTGGATAACATTCCAGCATGA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
* *
24316771 AGCCTGCGGGTTTTTAAGCCCGGATAACATTCCAACACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
*** * * *
24316811 AGCCTATAGGTCTCT-AGACCGGATAACATTCCAGCACAA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
24316850 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
* * * *
24316890 AGCTTGCGAGTCTTTAAGCCTGGCTAACATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
* *
24316930 AGCCTGCGGGTTTTTAAGCCCGGATAACATTCCAGCATGA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
* *
24316970 AGCCTGCGGGTTTTTAAGCCCAGATAA
1 AGCCTGCGGGTCTTTAAGCCCGGATAA
24316997 TACCTCAAGT
Statistics
Matches: 297, Mismatches: 44, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
38 4 0.01
39 72 0.24
40 221 0.74
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.22
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
Found at i:24316941 original size:159 final size:159
Alignment explanation
Indices: 24316660--24316974 Score: 535
Period size: 159 Copynumber: 2.0 Consensus size: 159
24316650 GTAGCCTGGG
24316660 GGTCTCTAACCCGGATAACATTCCAGCACGAAACCTGCGGGTCTTTAAGCCCGGATAACATTCCA
1 GGTCTCTAACCCGGATAACATTCCAGCACGAAACCTGCGGGTCTTTAAGCCCGGATAACATTCCA
* *
24316725 GCACGAAGCCTACGGGTCTTTAAGCCTGGATAACATTCCAGCATGAAGCCTGCGGGTTTTTAAGC
66 GCACGAAGCCTACGAGTCTTTAAGCCTGGATAACATTCCAGCACGAAGCCTGCGGGTTTTTAAGC
24316790 CCGGATAACATTCCAACACGAAGCCTATA
131 CCGGATAACATTCCAACACGAAGCCTATA
24316819 GGTCTCTAGA-CCGGATAACATTCCAGCAC-AAAGCCTGCGGGTCTTTAAGCCCGGATAACATTC
1 GGTCTCTA-ACCCGGATAACATTCCAGCACGAAA-CCTGCGGGTCTTTAAGCCCGGATAACATTC
* * *
24316882 CAGCACGAAGCTTGCGAGTCTTTAAGCCTGGCTAACATTCCAGCACGAAGCCTGCGGGTTTTTAA
64 CAGCACGAAGCCTACGAGTCTTTAAGCCTGGATAACATTCCAGCACGAAGCCTGCGGGTTTTTAA
* *
24316947 GCCCGGATAACATTCCAGCATGAAGCCT
129 GCCCGGATAACATTCCAACACGAAGCCT
24316975 GCGGGTTTTT
Statistics
Matches: 147, Mismatches: 7, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
158 3 0.02
159 143 0.97
160 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (159 bp):
GGTCTCTAACCCGGATAACATTCCAGCACGAAACCTGCGGGTCTTTAAGCCCGGATAACATTCCA
GCACGAAGCCTACGAGTCTTTAAGCCTGGATAACATTCCAGCACGAAGCCTGCGGGTTTTTAAGC
CCGGATAACATTCCAACACGAAGCCTATA
Found at i:24320893 original size:27 final size:27
Alignment explanation
Indices: 24320855--24320967 Score: 172
Period size: 27 Copynumber: 4.2 Consensus size: 27
24320845 AAATAGTCAT
24320855 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
* * **
24320882 TAATTTTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAA
*
24320909 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAA
*
24320936 TAATTCTACCCTATAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
24320963 TAATT
1 TAATT
24320968 TTACAAGTCA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAA
Found at i:24320967 original size:54 final size:54
Alignment explanation
Indices: 24320855--24320994 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
24320845 AAATAGTCAT
* * **
24320855 TAATTCTACCCTACAGGGGTATTTCAATAATTTTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAA
* *
24320909 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAA
* ** *
24320963 TAATTTTACAAGT-CAAGGGTATTTCAGTAATT
1 TAATTCTAC-CCTACAGGGGTATTTCAGTAATT
24320995 TCACAAATCA
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
54 74 0.99
55 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (54 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAA
Found at i:24321007 original size:81 final size:81
Alignment explanation
Indices: 24320855--24321093 Score: 247
Period size: 81 Copynumber: 3.0 Consensus size: 81
24320845 AAATAGTCAT
* **
24320855 TAATTCTACCCTACAGGGGTATTTCAATAATTTTAC-CCTACAAGGGTATTTCGGTAA-TTCTAC
1 TAATTCTACCCTATAGGGGTATTTCAATAATTTTACAAAT-CAAGGGTATTTCGGTAATTTC-AC
**
24320918 -CCTACAGGGGTATTTCAG
64 AAAT-CAGGGGTATTTCAG
* *
24320936 TAATTCTACCCTATAGGGGTATTTCAATAATTTTACAAGTCAAGGGTATTTCAGTAATTTCACAA
1 TAATTCTACCCTATAGGGGTATTTCAATAATTTTACAAATCAAGGGTATTTCGGTAATTTCACAA
**
24321001 ATCAGGGGTATTTTGG
66 ATCAGGGGTATTTCAG
* ** ** * *
24321017 TAATTTTA-CAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTT-GGTAATTTTACA
1 TAATTCTACCCTA-TAGGGGTATTTCAATAATTTTACAAATCAAGGGTATTTCGGTAATTTCACA
24321080 AA-CTAGGGGTATTT
65 AATC-AGGGGTATTT
24321094 TGGTAATTTT
Statistics
Matches: 136, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
79 1 0.01
80 24 0.18
81 106 0.78
82 5 0.04
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTATAGGGGTATTTCAATAATTTTACAAATCAAGGGTATTTCGGTAATTTCACAA
ATCAGGGGTATTTCAG
Found at i:24321008 original size:54 final size:54
Alignment explanation
Indices: 24320925--24321027 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
24320915 TACCCTACAG
**
24320925 GGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAATAATTTTACAAGTCAA
1 GGGTATTTCAGTAATTCTACCAAATAGGGGTATTTCAATAATTTTACAAGTCAA
***
24320979 GGGTATTTCAGTAATT-T-CACAAATCAGGGGTATTTTGGTAATTTTACAA
1 GGGTATTTCAGTAATTCTAC-CAAAT-AGGGGTATTTCAATAATTTTACAA
24321028 ACTAGGGGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
52 1 0.02
53 4 0.10
54 37 0.88
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (54 bp):
GGGTATTTCAGTAATTCTACCAAATAGGGGTATTTCAATAATTTTACAAGTCAA
Found at i:24321118 original size:80 final size:79
Alignment explanation
Indices: 24320953--24321156 Score: 257
Period size: 80 Copynumber: 2.5 Consensus size: 79
24320943 ACCCTATAGG
* ** *
24320953 GGTATTTCAATAATTTTACAAGTCAAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGT
1 GGTATTT-TATAATTTTACAAACCAAGGGTATTT-GGTAATTTCACAAATCAGGGGTATTTTGGT
* **
24321018 AATTTTACAAACTAGG
64 AATTTTACAAACAAAA
*
24321034 GGTATTTTGATAATTTTACAAACCAAGGGTATTTGGTAATTTTACAAA-CTAGGGGTATTTTGGT
1 GGTATTTT-ATAATTTTACAAACCAAGGGTATTTGGTAATTTCACAAATC-AGGGGTATTTTGGT
*
24321098 AATTTTATAAACAAAA
64 AATTTTACAAACAAAA
*
24321114 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GGTATTTTA-TAATTTTACAAACCAAGGGTA-TTTGGTAATTT
24321157 GGTAAACTAA
Statistics
Matches: 109, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
79 2 0.02
80 66 0.61
81 41 0.38
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (79 bp):
GGTATTTTATAATTTTACAAACCAAGGGTATTTGGTAATTTCACAAATCAGGGGTATTTTGGTAA
TTTTACAAACAAAA
Found at i:24321163 original size:27 final size:27
Alignment explanation
Indices: 24320963--24321156 Score: 237
Period size: 27 Copynumber: 7.2 Consensus size: 27
24320953 GGTATTTCAA
** * **
24320963 TAATTTTACAAGTCAAGGGTATTTCAG
1 TAATTTTACAAACCAGGGGTATTTTGG
* *
24320990 TAATTTCACAAATCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* *
24321017 TAATTTTACAAACTAGGGGTATTTTGA
1 TAATTTTACAAACCAGGGGTATTTTGG
*
24321044 TAATTTTACAAACCAAGGGTA-TTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
*
24321070 TAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* * ** *
24321097 TAATTTTATAAACAAAAGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGG
24321124 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
24321151 TAATTT
1 TAATTT
24321157 GGTAAACTAA
Statistics
Matches: 142, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 23 0.16
27 119 0.84
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
TAATTTTACAAACCAGGGGTATTTTGG
Found at i:24321163 original size:54 final size:54
Alignment explanation
Indices: 24321007--24321156 Score: 239
Period size: 53 Copynumber: 2.8 Consensus size: 54
24320997 ACAAATCAGG
* * * *
24321007 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAG
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAAA
24321061 GGTA-TTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAAA
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAAA
* *
24321114 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTT
24321157 GGTAAACTAA
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 49 0.55
54 40 0.45
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAAA
Found at i:24324061 original size:10 final size:8
Alignment explanation
Indices: 24324015--24324060 Score: 65
Period size: 8 Copynumber: 5.6 Consensus size: 8
24324005 TTATGAAAAA
24324015 TAAAATAT
1 TAAAATAT
*
24324023 TAAATTAT
1 TAAAATAT
*
24324031 TAAATTAT
1 TAAAATAT
24324039 TAAAATAT
1 TAAAATAT
24324047 TAAAATAT
1 TAAAATAT
24324055 ATAAAA
1 -TAAAA
24324061 AAATTGGTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
8 30 0.86
9 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
TAAAATAT
Found at i:24326140 original size:28 final size:27
Alignment explanation
Indices: 24326077--24326146 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
24326067 ATAGTGAGTC
24326077 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
24326104 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
24326132 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24326147 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:24333927 original size:28 final size:27
Alignment explanation
Indices: 24333864--24333933 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
24333854 ATAGTGAGTC
24333864 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
24333891 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
24333919 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24333934 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:24335510 original size:16 final size:15
Alignment explanation
Indices: 24335489--24335519 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
24335479 TCAAAAATCA
24335489 ATTTATTATCTTTTTT
1 ATTTATT-TCTTTTTT
24335505 ATTTATTTCTTTTTT
1 ATTTATTTCTTTTTT
24335520 CCAATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.77
Consensus pattern (15 bp):
ATTTATTTCTTTTTT
Found at i:24342677 original size:28 final size:28
Alignment explanation
Indices: 24342616--24342713 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
24342606 TCACAAATTG
** * *
24342616 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
24342645 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
24342673 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
24342701 GCACTAAGTGTGC
1 GCACTAAGTGTGC
24342714 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:24344299 original size:27 final size:27
Alignment explanation
Indices: 24344168--24344299 Score: 192
Period size: 27 Copynumber: 4.9 Consensus size: 27
24344158 GTTCGGGGTG
* *
24344168 TTACACTCGATTTACAGAATTACCGTT
1 TTACCCTCGATTTACAGAATTACTGTT
* **
24344195 TTACCTTCGATTTACAGAATTACCATT
1 TTACCCTCGATTTACAGAATTACTGTT
*
24344222 TTACCCTCGATTTATAGAATTACTGTT
1 TTACCCTCGATTTACAGAATTACTGTT
*
24344249 TTACCCTTGATTTACAGAATTACTGTT
1 TTACCCTCGATTTACAGAATTACTGTT
*
24344276 TTACCCTCGATTTACAAAATTACT
1 TTACCCTCGATTTACAGAATTACT
24344300 AAAATACCCT
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
TTACCCTCGATTTACAGAATTACTGTT
Found at i:24344308 original size:54 final size:54
Alignment explanation
Indices: 24344198--24344311 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
24344188 TACCGTTTTA
* * ****
24344198 CCTTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTAC
1 CCTT-GATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATAC
**
24344253 CCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATAC
1 CCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATAC
24344307 CCTTG
1 CCTTG
24344312 GTTTGTGAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
54 47 0.92
55 4 0.08
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (54 bp):
CCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATAC
Found at i:24344335 original size:81 final size:81
Alignment explanation
Indices: 24344176--24344336 Score: 180
Period size: 81 Copynumber: 2.0 Consensus size: 81
24344166 TGTTACACTC
* * ***
24344176 GATTTACAGAATTACCGTTTTACCTTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGAA
* ***
24344241 TTACTGTTTTACCCTT
66 TTACCGCAATACCCTT
* * * * *
24344257 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGT-GAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAG-A
24344321 ATTACCGCAATACCCT
65 ATTACCGCAATACCCT
24344337 CAATTTGTAA
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
80 1 0.02
81 64 0.98
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.39
Consensus pattern (81 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGAA
TTACCGCAATACCCTT
Found at i:24345638 original size:9 final size:9
Alignment explanation
Indices: 24345626--24345702 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
24345616 TTTGATAAAC
24345626 ATGATATGT
1 ATGATATGT
*
24345635 ATGATATGCAC
1 ATGATATG--T
24345646 ATGATATGT
1 ATGATATGT
*
24345655 ATGATATGCAC
1 ATGATATG--T
*
24345666 ATGACATGT
1 ATGATATGT
*
24345675 ATGATATGCAC
1 ATGATATG--T
24345686 ATGATATGT
1 ATGATATGT
24345695 ATGATATG
1 ATGATATG
24345703 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:24345651 original size:11 final size:11
Alignment explanation
Indices: 24345635--24345706 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
24345625 CATGATATGT
24345635 ATGATATGCAC
1 ATGATATGCAC
*
24345646 ATGATATG--T
1 ATGATATGCAC
24345655 ATGATATGCAC
1 ATGATATGCAC
* *
24345666 ATGACATG--T
1 ATGATATGCAC
24345675 ATGATATGCAC
1 ATGATATGCAC
*
24345686 ATGATATG--T
1 ATGATATGCAC
24345695 ATGATATGCAC
1 ATGATATGCAC
24345706 A
1 A
24345707 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:24345714 original size:20 final size:20
Alignment explanation
Indices: 24345624--24345706 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
24345614 ATTTTGATAA
24345624 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
24345644 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
24345664 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
24345684 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
24345704 ACA
1 ACA
24345707 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:24345817 original size:24 final size:24
Alignment explanation
Indices: 24345761--24345936 Score: 266
Period size: 24 Copynumber: 7.4 Consensus size: 24
24345751 GAGGAAGTGA
24345761 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
24345784 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
24345808 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
24345832 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
24345856 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
24345879 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
24345903 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
24345927 AAAAGAGGCT
1 AAAAG-GGCT
24345937 AGGCCTCTAG
Statistics
Matches: 140, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
23 43 0.31
24 93 0.66
25 4 0.03
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:24345830 original size:47 final size:47
Alignment explanation
Indices: 24345761--24345929 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
24345751 GAGGAAGTGA
24345761 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* *
24345808 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
24345856 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
24345903 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
24345930 AGAGGCTAGG
Statistics
Matches: 113, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
47 69 0.61
48 44 0.39
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:24345884 original size:71 final size:71
Alignment explanation
Indices: 24345760--24345936 Score: 266
Period size: 71 Copynumber: 2.5 Consensus size: 71
24345750 GGAGGAAGTG
* * *
24345760 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCT
1 AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
24345825 AGTTAT
66 AGTTAT
* *
24345831 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCC
24345895 CAGTTAT
65 CAGTTAT
*
24345902 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCT
1 AAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCT
24345937 AGGCCTCTAG
Statistics
Matches: 96, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
71 70 0.73
72 26 0.27
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (71 bp):
AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:24346179 original size:31 final size:31
Alignment explanation
Indices: 24346144--24346207 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
24346134 CGTTTACCGT
* *
24346144 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* **
24346175 AAAGGCTTCAGCCCATTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
24346206 AA
1 AA
24346208 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:24347027 original size:48 final size:46
Alignment explanation
Indices: 24346946--24347074 Score: 161
Period size: 47 Copynumber: 2.8 Consensus size: 46
24346936 CATATCTCGA
* * * **
24346946 GGCCGATGCATGTCCCAAACATGTCTTATACTAGCTCTCGTCTTAAT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAT-AT
*
24346993 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGT
1 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATAT
*
24347040 GGCCGATGCATGTCCCAGACATGTCTTACATTAGC
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGC
24347075 ACACATCCAT
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
46 19 0.26
47 28 0.39
48 25 0.35
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATAT
Found at i:24347766 original size:20 final size:20
Alignment explanation
Indices: 24347741--24347779 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
24347731 CACAATTTCA
24347741 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
24347761 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
24347780 AATAGCCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:24364641 original size:39 final size:40
Alignment explanation
Indices: 24364581--24364668 Score: 142
Period size: 39 Copynumber: 2.2 Consensus size: 40
24364571 TTACGTTTTC
* *
24364581 CCTTTTCTTACTCGGTTTTGTTCCTTGATCAAATGCCTTA
1 CCTTATCTTACTCAGTTTTGTTCCTTGATCAAATGCCTTA
*
24364621 CCTTATCTTA-TCAGTTTTGTTCCTTGATCGAATGCCTTA
1 CCTTATCTTACTCAGTTTTGTTCCTTGATCAAATGCCTTA
24364660 CCTTATCTT
1 CCTTATCTT
24364669 CTCTCCTCTC
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
39 36 0.80
40 9 0.20
ACGTcount: A:0.16, C:0.25, G:0.11, T:0.48
Consensus pattern (40 bp):
CCTTATCTTACTCAGTTTTGTTCCTTGATCAAATGCCTTA
Found at i:24366180 original size:26 final size:26
Alignment explanation
Indices: 24366150--24366201 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
24366140 ACTGATATTG
* *
24366150 TTACTGTTACTAAAAAGGGCTTAGGC
1 TTACTCTTACTAAAAAGGGCTAAGGC
* *
24366176 TTACTCTTACTGAAATGGGCTAAGGC
1 TTACTCTTACTAAAAAGGGCTAAGGC
24366202 CCAGACTGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
TTACTCTTACTAAAAAGGGCTAAGGC
Found at i:24366225 original size:34 final size:34
Alignment explanation
Indices: 24366177--24366274 Score: 142
Period size: 34 Copynumber: 2.9 Consensus size: 34
24366167 GGCTTAGGCT
* *
24366177 TACTCTTACTGAAATGGGCTAAGGCCCAGACTGC
1 TACTGTTACTGAAATGGGCTAAGGCCCAGACTAC
*
24366211 TACTGTTACTGAAATGGGCTAAGGTCCAGACTAC
1 TACTGTTACTGAAATGGGCTAAGGCCCAGACTAC
* * *
24366245 TACTGTTACTGATATGGGCTTAGACCCAGA
1 TACTGTTACTGAAATGGGCTAAGGCCCAGA
24366275 ATGTATTCAC
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 57 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (34 bp):
TACTGTTACTGAAATGGGCTAAGGCCCAGACTAC
Found at i:24367341 original size:27 final size:27
Alignment explanation
Indices: 24367311--24367362 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
24367301 ACCACAGAGG
24367311 GGCAAAATAATCATCTTACCATATAAT
1 GGCAAAATAATCATCTTACCATATAAT
* * *
24367338 GGCAAAATAGTCATTTTATCATATA
1 GGCAAAATAATCATCTTACCATATA
24367363 TAAGGGGTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (27 bp):
GGCAAAATAATCATCTTACCATATAAT
Found at i:24369986 original size:12 final size:13
Alignment explanation
Indices: 24369969--24370008 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 13
24369959 ACCTGAAAAT
24369969 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
24369981 ATTAAGAACACATA
1 ATTAAGAACA-AGA
24369995 ATTAAGAACAAGA
1 ATTAAGAACAAGA
24370008 A
1 A
24370009 CAAGTATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 6 0.25
13 6 0.25
14 12 0.50
ACGTcount: A:0.60, C:0.10, G:0.12, T:0.17
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:24372324 original size:26 final size:28
Alignment explanation
Indices: 24372295--24372350 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 28
24372285 AAATAAGTTC
*
24372295 AATAACAA-TAAACAGAAAG-ATAA-AAA
1 AATAA-AACTAAAAAGAAAGAATAAGAAA
24372321 AATAAAACTAAAAAGAAAGAATAAGAAA
1 AATAAAACTAAAAAGAAAGAATAAGAAA
24372349 AA
1 AA
24372351 GGAAATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 2 0.08
26 15 0.58
27 4 0.15
28 5 0.19
ACGTcount: A:0.75, C:0.05, G:0.09, T:0.11
Consensus pattern (28 bp):
AATAAAACTAAAAAGAAAGAATAAGAAA
Found at i:24372359 original size:27 final size:25
Alignment explanation
Indices: 24372301--24372360 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
24372291 GTTCAATAAC
* *
24372301 AATAAACAGAAAGATAAAAAAATAA
1 AATAAAAAGAAAGATAAAAAAAGAA
*
24372326 AACTAAAAAGAAAGAATAAGAAAAAGGA
1 AA-TAAAAAGAAAG-ATAA-AAAAAGAA
24372354 AATAAAA
1 AATAAAA
24372361 GAGATGGACC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 10 0.34
27 9 0.31
28 8 0.28
ACGTcount: A:0.75, C:0.03, G:0.12, T:0.10
Consensus pattern (25 bp):
AATAAAAAGAAAGATAAAAAAAGAA
Found at i:24377828 original size:92 final size:94
Alignment explanation
Indices: 24377645--24377819 Score: 223
Period size: 92 Copynumber: 1.9 Consensus size: 94
24377635 TTAAGGATAT
* *
24377645 CATGTAAGACCATGCCAATACATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
1 CATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
** *
24377710 CATGTCAATACATGGCAAGGCAAAGGTCC
66 CATGAAAATACATGGAAAGGCAAAGGTCC
* * * *
24377739 CATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGA
1 CATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGA
24377801 CCATGAAAAGT-CATGGAAA
65 CCATGAAAA-TACATGGAAA
24377820 TGGTAAGGTA
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
91 3 0.04
92 36 0.51
93 8 0.11
94 23 0.33
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.21
Consensus pattern (94 bp):
CATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
CATGAAAATACATGGAAAGGCAAAGGTCC
Found at i:24384115 original size:40 final size:40
Alignment explanation
Indices: 24384007--24384216 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24383997 CGGGATTTAA
* * * * *
24384007 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
24384047 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24384087 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24384127 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24384167 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24384207 CCGGATATAT
1 CCGGATATAT
24384217 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:24393514 original size:40 final size:39
Alignment explanation
Indices: 24393346--24393516 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
24393336 AGAAATTGAA
* *
24393346 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
24393386 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
24393426 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
24393466 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
24393506 TGATATCCGGG
1 TGATATCCGGG
24393517 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:24401405 original size:39 final size:40
Alignment explanation
Indices: 24401347--24401447 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
24401337 AAATTGAATG
* *
24401347 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
24401386 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
24401426 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
24401448 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:24401440 original size:40 final size:40
Alignment explanation
Indices: 24401347--24401497 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
24401337 AAATTGAATG
* * * * *
24401347 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
24401386 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
24401426 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
24401466 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
24401498 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:24401512 original size:40 final size:38
Alignment explanation
Indices: 24401343--24401514 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
24401333 TGAGAAATTG
* *
24401343 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
24401382 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
24401419 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
24401459 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
24401499 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
24401515 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:24403280 original size:27 final size:27
Alignment explanation
Indices: 24403242--24403370 Score: 177
Period size: 27 Copynumber: 4.8 Consensus size: 27
24403232 GCGTACTTGA
*
24403242 ACCCTCATGTGATAAAATGACGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
* *
24403269 ACCCTTATGTGATATAATGACTATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
*
24403296 ACCCTTATGTGATAAAATGACGACTTT
1 ACCCTTATGTGATAAAATGACGATTTT
**
24403323 ACCCTTATGTGAGGAAATGACGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
* * *
24403350 GCCTTTATGTGATCAAATGAC
1 ACCCTTATGTGATAAAATGAC
24403371 CGAAATACCC
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (27 bp):
ACCCTTATGTGATAAAATGACGATTTT
Done.