Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 10 of 427
Found at i:2960970 original size:21 final size:22
Alignment explanation
Indices: 2960925--2960970 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
2960915 TACCAACTTT
*
2960925 AAACTTTAACTAGTTAAAGTTG
1 AAACTTTAACTAGTTAAAGTAG
* *
2960947 AAACTTTAA-TATTTTAAGTAG
1 AAACTTTAACTAGTTAAAGTAG
2960968 AAA
1 AAA
2960971 AAAATTATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.37
Consensus pattern (22 bp):
AAACTTTAACTAGTTAAAGTAG
Found at i:2966627 original size:31 final size:31
Alignment explanation
Indices: 2966592--2966663 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
2966582 ACGTAATGTT
*
2966592 GAAAAACAATCTCAATTATTTGGATTATATA
1 GAAAAACAATCTCAATTATTTGGATTAGATA
* *
2966623 GAAAAACAATCTCAGTTATTTGGATTAGATT
1 GAAAAACAATCTCAATTATTTGGATTAGATA
2966654 GAAAAACAAT
1 GAAAAACAAT
2966664 AGACACTTGA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.32
Consensus pattern (31 bp):
GAAAAACAATCTCAATTATTTGGATTAGATA
Found at i:2968238 original size:23 final size:22
Alignment explanation
Indices: 2968212--2968254 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
2968202 CCATAAAATT
2968212 AAAAAAGAAAAACGAATCAATCC
1 AAAAAAGAAAAA-GAATCAATCC
* *
2968235 AAAAATGATAAAGAATCAAT
1 AAAAAAGAAAAAGAATCAAT
2968255 TCATTCTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.65, C:0.12, G:0.09, T:0.14
Consensus pattern (22 bp):
AAAAAAGAAAAAGAATCAATCC
Found at i:2970223 original size:3 final size:3
Alignment explanation
Indices: 2970217--2970268 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
2970207 ACACTACTAT
2970217 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
2970265 ATA A
1 ATA A
2970269 ATATAGAAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:2970472 original size:3 final size:3
Alignment explanation
Indices: 2970464--2970527 Score: 78
Period size: 3 Copynumber: 21.0 Consensus size: 3
2970454 AATAGGGGTG
*
2970464 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
2970509 ATA A-A TATA TATA ATA ATA
1 ATA ATA -ATA -ATA ATA ATA
2970528 GTAGTCAGAA
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
2 2 0.04
3 48 0.86
4 6 0.11
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:2970615 original size:3 final size:3
Alignment explanation
Indices: 2970602--2970689 Score: 62
Period size: 3 Copynumber: 29.3 Consensus size: 3
2970592 GAGGGTATAT
2970602 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
2970646 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A-A ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
2970689 A
1 A
2970690 AAAAATAAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
2 11 0.16
3 47 0.68
4 9 0.13
5 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:2970626 original size:12 final size:12
Alignment explanation
Indices: 2970602--2970685 Score: 75
Period size: 12 Copynumber: 6.8 Consensus size: 12
2970592 GAGGGTATAT
2970602 ATAATAT-AATA
1 ATAATATAAATA
2970613 ATAATATAAATA
1 ATAATATAAATA
2970625 ATAATATATACATGA
1 ATAATATA-A-AT-A
2970640 GA-AATA-ATAATA
1 -ATAATATA-AATA
2970652 ATAATATAAATA
1 ATAATATAAATA
* *
2970664 ATAGTAAAAATA
1 ATAATATAAATA
*
2970676 ATAAAATAAA
1 ATAATATAAA
2970686 ATAAAAAAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 13
0.77 0.06 0.16
Matches are distributed among these distances:
11 8 0.13
12 38 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:2970632 original size:30 final size:30
Alignment explanation
Indices: 2970598--2970689 Score: 82
Period size: 33 Copynumber: 2.9 Consensus size: 30
2970588 TGGAGAGGGT
2970598 ATATATAATATAATAATAATATAAATAATA
1 ATATATAATATAATAATAATATAAATAATA
*
2970628 ATATATACATGAGAAATAATAATAATAATATAAATA
1 ATATATA-AT-A-TAATAATAAT-ATAA-AT-AATA
*
2970664 ATAGTA-AAAATAATAA-AATA-AAATAA
1 ATA-TATAATATAATAATAATATAAATAA
2970690 AAAAATAAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 16
0.73 0.04 0.23
Matches are distributed among these distances:
28 2 0.04
29 2 0.04
30 9 0.17
31 3 0.06
32 4 0.08
33 14 0.27
34 5 0.10
35 3 0.06
36 8 0.15
37 2 0.04
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (30 bp):
ATATATAATATAATAATAATATAAATAATA
Found at i:2970646 original size:21 final size:18
Alignment explanation
Indices: 2970607--2970666 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
2970597 TATATATAAT
*
2970607 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
2970625 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
2970646 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
2970664 ATA
1 ATA
2970667 GTAAAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
18 15 0.41
19 5 0.14
20 5 0.14
21 12 0.32
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:2971274 original size:30 final size:30
Alignment explanation
Indices: 2971197--2971282 Score: 136
Period size: 30 Copynumber: 2.9 Consensus size: 30
2971187 ATTTGATGGT
* * *
2971197 GTAGGTGCAAGTAGGAGACAAGGTGATGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
2971227 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
*
2971257 GTAGGTGCAAGTGGGAGGCAAAGTGG
1 GTAGGTGCAAGTGGGAGGCAAGGTGG
2971283 CTAAGGTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.28, C:0.07, G:0.49, T:0.16
Consensus pattern (30 bp):
GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
Found at i:2971692 original size:13 final size:13
Alignment explanation
Indices: 2971671--2971705 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
2971661 ACATTGTTTC
2971671 AACAATAAATTAA
1 AACAATAAATTAA
*
2971684 AACAGTAAATTAA
1 AACAATAAATTAA
2971697 AACAATAAA
1 AACAATAAA
2971706 ATTTTACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.69, C:0.09, G:0.03, T:0.20
Consensus pattern (13 bp):
AACAATAAATTAA
Found at i:2971955 original size:2 final size:2
Alignment explanation
Indices: 2971948--2971980 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
2971938 AATTACATTA
2971948 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2971981 AACTATTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2973160 original size:41 final size:41
Alignment explanation
Indices: 2973107--2973187 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
2973097 GATCAAATAA
2973107 TTTTTTTATCCTGTTCATATAAATTTTTAAATTAAATAATT
1 TTTTTTTATCCTGTTCATATAAATTTTTAAATTAAATAATT
*
2973148 TTTTTTTATCCTGTTCATATAAATTTTTAAATTAATTAAT
1 TTTTTTTATCCTGTTCATATAAATTTTTAAATTAAATAAT
2973188 CTAATGACTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.57
Consensus pattern (41 bp):
TTTTTTTATCCTGTTCATATAAATTTTTAAATTAAATAATT
Found at i:2975262 original size:27 final size:27
Alignment explanation
Indices: 2975240--2975329 Score: 155
Period size: 27 Copynumber: 3.3 Consensus size: 27
2975230 ATTTTATTAG
2975240 TTAAATTATTTTTACTTACTTTAATAT
1 TTAAATTATTTTTACTTACTTTAATAT
*
2975267 TTAAATTATTTTTACTTATCATT-ATAT
1 TTAAATTATTTTTACTTA-CTTTAATAT
2975294 TTAAATTATTTTTACTTACTTTAATAT
1 TTAAATTATTTTTACTTACTTTAATAT
2975321 TTAAATTAT
1 TTAAATTAT
2975330 CATTATATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
26 3 0.05
27 53 0.90
28 3 0.05
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (27 bp):
TTAAATTATTTTTACTTACTTTAATAT
Found at i:2975299 original size:54 final size:54
Alignment explanation
Indices: 2975240--2975400 Score: 202
Period size: 54 Copynumber: 3.2 Consensus size: 54
2975230 ATTTTATTAG
2975240 TTAAATTATTTTTACTTACTTTAATATTTAAATTATTTTTACTTATCATTATAT
1 TTAAATTATTTTTACTTACTTTAATATTTAAATTATTTTTACTTATCATTATAT
2975294 TTAAATTATTTTTACTTACTTTAATATTT--A--A-----A-TTATCATTATAT
1 TTAAATTATTTTTACTTACTTTAATATTTAAATTATTTTTACTTATCATTATAT
* *
2975338 TTAAATTATTTTTACTTATCATT-ATATTTAAATTATTTTTACTTA-CTTTAATAT
1 TTAAATTATTTTTACTTA-CTTTAATATTTAAATTATTTTTACTTATCATT-ATAT
2975392 TTAAATTAT
1 TTAAATTAT
2975401 CATTATATTA
Statistics
Matches: 93, Mismatches: 2, Indels: 24
0.78 0.02 0.20
Matches are distributed among these distances:
44 36 0.39
45 4 0.04
46 1 0.01
48 1 0.01
50 1 0.01
52 1 0.01
53 4 0.04
54 45 0.48
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (54 bp):
TTAAATTATTTTTACTTACTTTAATATTTAAATTATTTTTACTTATCATTATAT
Found at i:2975335 original size:44 final size:44
Alignment explanation
Indices: 2975282--2975373 Score: 159
Period size: 44 Copynumber: 2.1 Consensus size: 44
2975272 TTATTTTTAC
*
2975282 TTATCATTATATTTAAATTATTTTTACTTA-CTTTAATATTTAAA
1 TTATCATTATATTTAAATTATTTTTACTTATCATT-ATATTTAAA
2975326 TTATCATTATATTTAAATTATTTTTACTTATCATTATATTTAAA
1 TTATCATTATATTTAAATTATTTTTACTTATCATTATATTTAAA
2975370 TTAT
1 TTAT
2975374 TTTTACTTAC
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 43 0.93
45 3 0.07
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.58
Consensus pattern (44 bp):
TTATCATTATATTTAAATTATTTTTACTTATCATTATATTTAAA
Found at i:2975344 original size:71 final size:71
Alignment explanation
Indices: 2975263--2975409 Score: 294
Period size: 71 Copynumber: 2.1 Consensus size: 71
2975253 ACTTACTTTA
2975263 ATATTTAAATTATTTTTACTTATCATTATATTTAAATTATTTTTACTTACTTTAATATTTAAATT
1 ATATTTAAATTATTTTTACTTATCATTATATTTAAATTATTTTTACTTACTTTAATATTTAAATT
2975328 ATCATT
66 ATCATT
2975334 ATATTTAAATTATTTTTACTTATCATTATATTTAAATTATTTTTACTTACTTTAATATTTAAATT
1 ATATTTAAATTATTTTTACTTATCATTATATTTAAATTATTTTTACTTACTTTAATATTTAAATT
2975399 ATCATT
66 ATCATT
2975405 ATATT
1 ATATT
2975410 ACATGATTTA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 76 1.00
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (71 bp):
ATATTTAAATTATTTTTACTTATCATTATATTTAAATTATTTTTACTTACTTTAATATTTAAATT
ATCATT
Found at i:2975357 original size:27 final size:27
Alignment explanation
Indices: 2975326--2975400 Score: 125
Period size: 27 Copynumber: 2.8 Consensus size: 27
2975316 AATATTTAAA
2975326 TTATCATTATATTTAAATTATTTTTAC
1 TTATCATTATATTTAAATTATTTTTAC
2975353 TTATCATTATATTTAAATTATTTTTAC
1 TTATCATTATATTTAAATTATTTTTAC
*
2975380 TTA-CTTTAATATTTAAATTAT
1 TTATCATT-ATATTTAAATTAT
2975401 CATTATATTA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 3 0.07
27 43 0.93
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.59
Consensus pattern (27 bp):
TTATCATTATATTTAAATTATTTTTAC
Found at i:2978047 original size:21 final size:22
Alignment explanation
Indices: 2978009--2978053 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
2977999 CAGAGAACAG
*
2978009 AGAAAAAGAGAAAGAAAGAAGA
1 AGAAAAAAAGAAAGAAAGAAGA
*
2978031 AGAAAAAAATAAA-AAAGAAGA
1 AGAAAAAAAGAAAGAAAGAAGA
2978052 AG
1 AG
2978054 TGGAGGAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (22 bp):
AGAAAAAAAGAAAGAAAGAAGA
Found at i:2980997 original size:40 final size:40
Alignment explanation
Indices: 2980938--2981120 Score: 131
Period size: 40 Copynumber: 4.6 Consensus size: 40
2980928 TCGTTCAAAC
* * * * *
2980938 GCCTTCTGGACATAGCCCGGTTATGGTAACCCGCACCAA-G
1 GCCTTCGGGACTTAGCCCGGATATCGCAACCCGCA-CAATG
* * *
2980978 GCCTTCGGGACTTAACCCGGATATCGCAACTCGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCGCAACCCGCACAATG
* ***
2981018 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAAAT-
1 GCCTTCGGGACTTAGCCCGGATATCGCAACCCGCAC-AATG
* * * ** *
2981057 GCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCG-CAACCCGCACAATG
* *
2981097 GCCTTCGGGTCTTAACCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
2981121 AATTACTAGC
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 37 0.31
40 81 0.68
41 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATCGCAACCCGCACAATG
Found at i:2981034 original size:79 final size:80
Alignment explanation
Indices: 2980965--2981120 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 80
2980955 CGGTTATGGT
* * *
2980965 AACCCGCACCAAGGCCTTCGGGACTTAACCCGGATATCG-CAACTCGCACAATTGCCTTCGGG-C
1 AACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTC
2981028 TTAGCCCGGATATCAC
65 TTAGCCCGGATATCAC
*** * * * *
2981044 AATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCT
1 AACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATAGTCACTAGCACAATTGCCTTCGGGTCT
*
2981109 TAACCCGGATAT
66 TAGCCCGGATAT
2981121 AATTACTAGC
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
79 50 0.78
80 14 0.22
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.24
Consensus pattern (80 bp):
AACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATAGTCACTAGCACAATTGCCTTCGGGTCT
TAGCCCGGATATCAC
Found at i:2981129 original size:40 final size:40
Alignment explanation
Indices: 2980978--2981160 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
2980968 CCGCACCAAG
* ** * *
2980978 GCCTTCGGGACTTAACCCGGATATCGCAACTCGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATAACAACTAGCACAAAT
* * *
2981018 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAACAACTAGCACAAAT
* * * *
2981057 GCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATA-ACAACTAGCACAAAT
* * ** *
2981097 GCCTTCGGGTCTTAACCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAACAACTAGCACAAAT
2981137 GTCC-TCGGGACTTAGCCCGGATAT
1 G-CCTTCGGGACTTAGCCCGGATAT
2981161 CATTCAATTG
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 34 0.28
40 83 0.69
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAACAACTAGCACAAAT
Found at i:2981151 original size:80 final size:79
Alignment explanation
Indices: 2980978--2981160 Score: 217
Period size: 80 Copynumber: 2.3 Consensus size: 79
2980968 CCGCACCAAG
* * * * *
2980978 GCCTTCGGGACTTAACCCGGATATCGCAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAATTGCCTTCGGGCTTAACCCGGATATAA
* *
2981043 CAATTTGCACAAAT
66 CAACTAGCACAAAT
* *
2981057 GCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAACCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAATTGCCTTCGGG-CTTAACCCGGATAT
** *
2981121 AATTACTAGCATAAAT
64 AACAACTAGCACAAAT
2981137 GTCC-TCGGGACTTAGCCCGGATAT
1 G-CCTTCGGGACTTAGCCCGGATAT
2981161 CATTCAATTG
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 42 0.48
80 43 0.49
81 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
GCCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAATTGCCTTCGGGCTTAACCCGGATATAA
CAACTAGCACAAAT
Found at i:2985576 original size:40 final size:40
Alignment explanation
Indices: 2985517--2985699 Score: 131
Period size: 40 Copynumber: 4.6 Consensus size: 40
2985507 TCGTTCAAAC
* * * * *
2985517 GCCTTCTGGACATAGCCCGGTTATGGTAACCCGCACCAA-G
1 GCCTTCGGGACTTAGCCCGGATATCGCAACCCGCA-CAATG
* * *
2985557 GCCTTCGGGACTTAACCCGGATATCGCAACTCGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCGCAACCCGCACAATG
* ***
2985597 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAAAT-
1 GCCTTCGGGACTTAGCCCGGATATCGCAACCCGCAC-AATG
* * * ** *
2985636 GCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCG-CAACCCGCACAATG
* *
2985676 GCCTTCGGGTCTTAACCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
2985700 AATTACTAGC
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 37 0.31
40 81 0.68
41 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATCGCAACCCGCACAATG
Found at i:2985613 original size:79 final size:80
Alignment explanation
Indices: 2985544--2985699 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 80
2985534 CGGTTATGGT
* * *
2985544 AACCCGCACCAAGGCCTTCGGGACTTAACCCGGATATCG-CAACTCGCACAATTGCCTTCGGG-C
1 AACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTC
2985607 TTAGCCCGGATATCAC
65 TTAGCCCGGATATCAC
*** * * * *
2985623 AATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCT
1 AACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATAGTCACTAGCACAATTGCCTTCGGGTCT
*
2985688 TAACCCGGATAT
66 TAGCCCGGATAT
2985700 AATTACTAGC
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
79 50 0.78
80 14 0.22
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.24
Consensus pattern (80 bp):
AACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATAGTCACTAGCACAATTGCCTTCGGGTCT
TAGCCCGGATATCAC
Found at i:2985708 original size:40 final size:40
Alignment explanation
Indices: 2985557--2985739 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
2985547 CCGCACCAAG
* ** * *
2985557 GCCTTCGGGACTTAACCCGGATATCGCAACTCGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATAACAACTAGCACAAAT
* * *
2985597 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAACAACTAGCACAAAT
* * * *
2985636 GCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATA-ACAACTAGCACAAAT
* * ** *
2985676 GCCTTCGGGTCTTAACCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAACAACTAGCACAAAT
2985716 GTCC-TCGGGACTTAGCCCGGATAT
1 G-CCTTCGGGACTTAGCCCGGATAT
2985740 CATTCAATTG
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 34 0.28
40 83 0.69
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAACAACTAGCACAAAT
Found at i:2985730 original size:80 final size:79
Alignment explanation
Indices: 2985557--2985739 Score: 217
Period size: 80 Copynumber: 2.3 Consensus size: 79
2985547 CCGCACCAAG
* * * * *
2985557 GCCTTCGGGACTTAACCCGGATATCGCAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAATTGCCTTCGGGCTTAACCCGGATATAA
* *
2985622 CAATTTGCACAAAT
66 CAACTAGCACAAAT
* *
2985636 GCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAACCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAATTGCCTTCGGG-CTTAACCCGGATAT
** *
2985700 AATTACTAGCATAAAT
64 AACAACTAGCACAAAT
2985716 GTCC-TCGGGACTTAGCCCGGATAT
1 G-CCTTCGGGACTTAGCCCGGATAT
2985740 CATTCAATTG
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 42 0.48
80 43 0.49
81 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
GCCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAATTGCCTTCGGGCTTAACCCGGATATAA
CAACTAGCACAAAT
Found at i:2989487 original size:16 final size:16
Alignment explanation
Indices: 2989466--2989499 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
2989456 CCATCCTCGA
2989466 AGCGTTTACACATAAT
1 AGCGTTTACACATAAT
2989482 AGCGTTTACACATAAT
1 AGCGTTTACACATAAT
2989498 AG
1 AG
2989500 AAGAAGCTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (16 bp):
AGCGTTTACACATAAT
Found at i:2991574 original size:39 final size:40
Alignment explanation
Indices: 2991452--2991594 Score: 155
Period size: 40 Copynumber: 3.6 Consensus size: 40
2991442 GCTAGTAATT
* * *
2991452 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG-CG
* * * *
2991492 ACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGCG
* * *
2991532 ATATCCGGGCTAAG-TCTGAAGGCAATTGTGCGAGTTGCG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGCG
* *
2991571 ATATCCGGGTTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
2991595 CTTGGTGCGG
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 32 0.38
40 50 0.60
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGCG
Found at i:2998209 original size:40 final size:40
Alignment explanation
Indices: 2998136--2998318 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 40
2998126 CAATTGAATG
* * * * * *
2998136 ATATCCGGGCTTAGTCCCG-AGGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGG-CAATTGTGCTAGTTACT
* *
2998176 ATATCCGGGTTAAGAGCCGAAGGCAATTGTGCTAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTACT
* * * * *
2998216 ACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATT-GT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTACT
* * *
2998255 GATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGCA
1 -ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTACT
* *
2998295 ATATCCGGGTTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
2998319 CTTGGTACGG
Statistics
Matches: 117, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 33 0.28
40 81 0.69
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTACT
Found at i:3005347 original size:30 final size:30
Alignment explanation
Indices: 3005305--3005385 Score: 108
Period size: 30 Copynumber: 2.7 Consensus size: 30
3005295 TTTAACGAAC
*
3005305 TTGCTCACACAAGTTGGCTTTATAATAGAA
1 TTGCTCAAACAAGTTGGCTTTATAATAGAA
* *
3005335 TTGTTCAAACAAGCTGGCTTTATAATAGAA
1 TTGCTCAAACAAGTTGGCTTTATAATAGAA
* * *
3005365 TTGCTCACACAAATTGACTTT
1 TTGCTCAAACAAGTTGGCTTT
3005386 GTGAATTGCT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (30 bp):
TTGCTCAAACAAGTTGGCTTTATAATAGAA
Found at i:3005398 original size:26 final size:26
Alignment explanation
Indices: 3005362--3005413 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3005352 CTTTATAATA
*
3005362 GAATTGCTCACACAAATTGACTTTGT
1 GAATTGCTCACACAAACTGACTTTGT
* *
3005388 GAATTGCTCACATAAGCTGACTTTGT
1 GAATTGCTCACACAAACTGACTTTGT
3005414 AATATTTCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (26 bp):
GAATTGCTCACACAAACTGACTTTGT
Found at i:3018117 original size:27 final size:27
Alignment explanation
Indices: 3018082--3018152 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
3018072 TTGCAACTTG
3018082 TTATTCACATACCAACCAACCAATTTA
1 TTATTCACATACCAACCAACCAATTTA
*
3018109 TTATTCACATGCCAACCAACCAATTTA
1 TTATTCACATACCAACCAACCAATTTA
3018136 TTATTC-CA-ACCAACCAA
1 TTATTCACATACCAACCAA
3018153 TTTGTTTTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 8 0.19
26 2 0.05
27 32 0.76
ACGTcount: A:0.39, C:0.31, G:0.01, T:0.28
Consensus pattern (27 bp):
TTATTCACATACCAACCAACCAATTTA
Found at i:3024326 original size:30 final size:29
Alignment explanation
Indices: 3024290--3024378 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 29
3024280 GAACTTGCTT
3024290 ACACAAGTTGACTTTATATTAGAATTGTTC
1 ACACAAGTTGACTTTATA-TAGAATTGTTC
* * *
3024320 ACACAAGTTGACTTTGTA-ATAATTGCTC
1 ACACAAGTTGACTTTATATAGAATTGTTC
* * *
3024348 ACACAAGCTAATTTTATAATAGAATTGTTC
1 ACACAAGTTGACTTTAT-ATAGAATTGTTC
3024378 A
1 A
3024379 TACATGCTAA
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
28 21 0.44
29 1 0.02
30 26 0.54
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (29 bp):
ACACAAGTTGACTTTATATAGAATTGTTC
Found at i:3024374 original size:58 final size:57
Alignment explanation
Indices: 3024284--3024424 Score: 149
Period size: 58 Copynumber: 2.5 Consensus size: 57
3024274 TTTAACGAAC
* * * * * *
3024284 TTGCTTACACAAGTTGACTTTATATTAGAATTGTTCACACAAGTTGACTTTGTAATAA
1 TTGCTCACACAAGCTAACTTTATAATAGAATTGTTCACACAAGCTAACTTTGTAA-AA
* * * *
3024342 TTGCTCACACAAGCTAATTTTATAATAGAATTGTTCATACATGCTAACTTTGTGAAA
1 TTGCTCACACAAGCTAACTTTATAATAGAATTGTTCACACAAGCTAACTTTGTAAAA
* * *
3024399 -TGCTCACGCAAGCTGACTTTGTAATA
1 TTGCTCACACAAGCTAACTTTATAATA
3024425 CTTCCATACA
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
56 22 0.32
57 2 0.03
58 45 0.65
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (57 bp):
TTGCTCACACAAGCTAACTTTATAATAGAATTGTTCACACAAGCTAACTTTGTAAAA
Found at i:3025653 original size:136 final size:137
Alignment explanation
Indices: 3025409--3025694 Score: 502
Period size: 136 Copynumber: 2.1 Consensus size: 137
3025399 CATTGGGCCT
** * * *
3025409 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTATAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
3025474 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
3025538 CATATGC
131 CATATGC
*
3025545 AAGCCTATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
3025610 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
3025675 CATATGC
131 CATATGC
3025682 AAGCCCATTTGGG
1 AAGCCCATTTGGG
3025695 GAGACTACTC
Statistics
Matches: 141, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
136 120 0.85
137 21 0.15
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:3027510 original size:26 final size:26
Alignment explanation
Indices: 3027474--3027608 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
3027464 CATGATATTC
3027474 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
3027500 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
3027526 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
3027552 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
3027578 TTATCATGGAACATTTACCTAA-CTA
1 TTATCATGAAACATTTACCTAACCCA
3027603 TTATCA
1 TTATCA
3027609 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 8 0.08
26 95 0.92
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:3031553 original size:135 final size:137
Alignment explanation
Indices: 3031310--3031594 Score: 520
Period size: 135 Copynumber: 2.1 Consensus size: 137
3031300 CATTGGGCCT
** *
3031310 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
3031375 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
3031439 CATATGC
131 CATATGC
3031446 AAGCCCATTTGGGTAACAGTGATACTGGGCCA-AGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
3031510 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
3031575 CATATGC
131 CATATGC
3031582 AAGCCCATTTGGG
1 AAGCCCATTTGGG
3031595 GAGACTACTC
Statistics
Matches: 144, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
135 93 0.65
136 51 0.35
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:3033411 original size:26 final size:26
Alignment explanation
Indices: 3033375--3033510 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
3033365 CATGATATTC
3033375 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
3033401 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
3033427 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
3033453 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
3033479 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
3033505 TTATCA
1 TTATCA
3033511 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:3038857 original size:26 final size:26
Alignment explanation
Indices: 3038820--3038955 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
3038810 TGATACAAAT
* *
3038820 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
3038846 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* * *
3038872 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
3038898 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
3038924 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
3038950 TGATAA
1 TGATAA
3038956 GAATTCATGT
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:3040962 original size:135 final size:137
Alignment explanation
Indices: 3040719--3041003 Score: 529
Period size: 135 Copynumber: 2.1 Consensus size: 137
3040709 GAGTAGTCTC
3040719 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
3040784 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCT-TGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
3040848 ACTGTTA
131 ACTGTTA
3040855 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
3040919 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
3040984 ACTGTTA
131 ACTGTTA
**
3040991 CCTGAATGGGCTT
1 CCCAAATGGGCTT
3041004 AGGCCCAATG
Statistics
Matches: 145, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
135 96 0.66
136 49 0.34
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:3044168 original size:3 final size:3
Alignment explanation
Indices: 3044149--3044221 Score: 128
Period size: 3 Copynumber: 24.0 Consensus size: 3
3044139 GTATATGCAT
*
3044149 ATA ATA AAA ATA TATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
3044195 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
3044222 TGAAAATACA
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
3 64 0.96
4 3 0.04
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:3045570 original size:14 final size:13
Alignment explanation
Indices: 3045526--3045567 Score: 66
Period size: 13 Copynumber: 3.1 Consensus size: 13
3045516 GTAGGAGGTG
3045526 AAGAGGCGGTTGA
1 AAGAGGCGGTTGA
3045539 AAGAGGCGGTTGA
1 AAGAGGCGGTTGA
3045552 AAGAGCGCGGATTGA
1 AAGAG-GCGG-TTGA
3045567 A
1 A
3045568 GAGAAGAGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 18 0.67
14 4 0.15
15 5 0.19
ACGTcount: A:0.33, C:0.10, G:0.43, T:0.14
Consensus pattern (13 bp):
AAGAGGCGGTTGA
Found at i:3049395 original size:13 final size:13
Alignment explanation
Indices: 3049372--3049403 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
3049362 ACAAGTAGTC
3049372 AAAAGGTCAAAAAG
1 AAAA-GTCAAAAAG
3049386 AAAAGTCAAAAAG
1 AAAAGTCAAAAAG
3049399 AAAAG
1 AAAAG
3049404 AAAAGATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.69, C:0.06, G:0.19, T:0.06
Consensus pattern (13 bp):
AAAAGTCAAAAAG
Found at i:3053756 original size:27 final size:27
Alignment explanation
Indices: 3053726--3053815 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 27
3053716 TTGCAACATG
*
3053726 TTATTCACACGCCAAACAACCAATTTA
1 TTATTCACATGCCAAACAACCAATTTA
* *
3053753 TTA-T----T-CCAACCAACTAATTTA
1 TTATTCACATGCCAAACAACCAATTTA
3053774 TTATTCACATGCCAAACAACCAATTTA
1 TTATTCACATGCCAAACAACCAATTTA
*
3053801 TTTTTCACATGCCAA
1 TTATTCACATGCCAA
3053816 CCAATTTGTT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
21 17 0.33
22 1 0.02
26 2 0.04
27 31 0.61
ACGTcount: A:0.38, C:0.27, G:0.03, T:0.32
Consensus pattern (27 bp):
TTATTCACATGCCAAACAACCAATTTA
Found at i:3053766 original size:21 final size:21
Alignment explanation
Indices: 3053737--3053779 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
3053727 TATTCACACG
3053737 CCAAACAACCAATTTATTATT
1 CCAAACAACCAATTTATTATT
* *
3053758 CCAACCAACTAATTTATTATT
1 CCAAACAACCAATTTATTATT
3053779 C
1 C
3053780 ACATGCCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.35
Consensus pattern (21 bp):
CCAAACAACCAATTTATTATT
Found at i:3055414 original size:28 final size:28
Alignment explanation
Indices: 3055345--3055486 Score: 128
Period size: 28 Copynumber: 5.0 Consensus size: 28
3055335 TTGAACAAAC
* *
3055345 TTGCTCACACAAGTTGGACTTTATGTTAGAA
1 TTGCTCACACAAGTT-GAC-TT-TGTAATAA
**
3055376 TTATTCACACAAGTTGACTTTGTAATAA
1 TTGCTCACACAAGTTGACTTTGTAATAA
3055404 TTGCTCACACAAGTTGACTTTGTAATAGAA
1 TTGCTCACACAAGTTGACTTTGTAAT--AA
* * *
3055434 TTGTTCACACATA-CTGACTTTGTGA-AA
1 TTGCTCACACA-AGTTGACTTTGTAATAA
* *
3055461 -TGCTCACACAAGCTAACTTTGTAATA
1 TTGCTCACACAAGTTGACTTTGTAATA
3055487 CTTCCATACA
Statistics
Matches: 94, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
25 1 0.01
26 19 0.20
27 3 0.03
28 30 0.32
29 2 0.02
30 25 0.27
31 14 0.15
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (28 bp):
TTGCTCACACAAGTTGACTTTGTAATAA
Found at i:3055441 original size:58 final size:57
Alignment explanation
Indices: 3055345--3055486 Score: 171
Period size: 58 Copynumber: 2.5 Consensus size: 57
3055335 TTGAACAAAC
* ** *
3055345 TTGCTCACACAAGTTGGACTTTATGTTAGAATTATTCACACA-AGTTGACTTTGTAATAA
1 TTGCTCACACAAGTT-GACTTTGTAATAGAATTATTCACACATA-CTGACTTTGTAA-AA
* *
3055404 TTGCTCACACAAGTTGACTTTGTAATAGAATTGTTCACACATACTGACTTTGTGAAA
1 TTGCTCACACAAGTTGACTTTGTAATAGAATTATTCACACATACTGACTTTGTAAAA
* *
3055461 -TGCTCACACAAGCTAACTTTGTAATA
1 TTGCTCACACAAGTTGACTTTGTAATA
3055487 CTTCCATACA
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
56 24 0.32
57 2 0.03
58 32 0.43
59 16 0.22
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (57 bp):
TTGCTCACACAAGTTGACTTTGTAATAGAATTATTCACACATACTGACTTTGTAAAA
Found at i:3062001 original size:23 final size:23
Alignment explanation
Indices: 3061956--3062003 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
3061946 TACAAGCTTA
*
3061956 CTGTTCATGATATTCAGAGCATT
1 CTGTTCATGATATTCAGAACATT
* * *
3061979 CTGTTCATGTTCTTCGGAACATT
1 CTGTTCATGATATTCAGAACATT
3062002 CT
1 CT
3062004 AATTTGGTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.42
Consensus pattern (23 bp):
CTGTTCATGATATTCAGAACATT
Found at i:3065216 original size:19 final size:20
Alignment explanation
Indices: 3065194--3065237 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
3065184 TGAATAATGT
3065194 ATAA-AACTTAAAATAAATA
1 ATAAGAACTTAAAATAAATA
3065213 ATAAAAGAACTTAAAATAAATA
1 AT--AAGAACTTAAAATAAATA
3065235 ATA
1 ATA
3065238 TATAAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
19 2 0.09
20 1 0.05
21 2 0.09
22 17 0.77
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (20 bp):
ATAAGAACTTAAAATAAATA
Found at i:3065242 original size:26 final size:22
Alignment explanation
Indices: 3065203--3065268 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 22
3065193 TATAAAACTT
3065203 AAAATAAATAATAAAAGAACTTAAA
1 AAAATAAAT-ATAAAA-AA-TTAAA
3065228 ATAAATAATATATAAAAAATTAAA
1 A-AAATAA-ATATAAAAAATTAAA
3065252 AAGAATAACATATAAAA
1 AA-AATAA-ATATAAAA
3065269 TAGTTTAACT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
23 1 0.03
24 19 0.51
25 3 0.08
26 12 0.32
27 2 0.05
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (22 bp):
AAAATAAATATAAAAAATTAAA
Found at i:3065337 original size:13 final size:11
Alignment explanation
Indices: 3065312--3065345 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 11
3065302 GAATAGATAA
3065312 TATATAAAAAG
1 TATATAAAAAG
3065323 TATATAATAAGAG
1 TATATAA-AA-AG
3065336 TATATAAAAA
1 TATATAAAAA
3065346 ATGTTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 8 0.38
12 4 0.19
13 9 0.43
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (11 bp):
TATATAAAAAG
Found at i:3065603 original size:27 final size:26
Alignment explanation
Indices: 3065544--3065611 Score: 77
Period size: 27 Copynumber: 2.7 Consensus size: 26
3065534 TAAGATATGT
*
3065544 AAAACTT-AAATAAAT-AATAATAAA
1 AAAACTTAAAATAAATAAATAAGAAA
** *
3065568 ATGATTTAAAATAAATAATATAAGAAA
1 AAAACTTAAAATAAATAA-ATAAGAAA
3065595 AAAACTTAAAATAAATA
1 AAAACTTAAAATAAATA
3065612 TAAATAAAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
24 4 0.12
25 8 0.24
26 1 0.03
27 21 0.62
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (26 bp):
AAAACTTAAAATAAATAAATAAGAAA
Found at i:3066946 original size:38 final size:39
Alignment explanation
Indices: 3066860--3066965 Score: 205
Period size: 39 Copynumber: 2.7 Consensus size: 39
3066850 TGTATGCATT
3066860 TTAGCATTTTAATAGTTAATGGATGATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGATGATGGGCA
3066899 TTAGCATTTTAATAGTTAATGGATGATGGATGAT-GGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGATGATGGGCA
3066937 TTAGCATTTTAATAGTTAATGGATGATGG
1 TTAGCATTTTAATAGTTAATGGATGATGG
3066966 GCATGGTAAG
Statistics
Matches: 67, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
38 33 0.49
39 34 0.51
ACGTcount: A:0.31, C:0.05, G:0.26, T:0.38
Consensus pattern (39 bp):
TTAGCATTTTAATAGTTAATGGATGATGGATGATGGGCA
Found at i:3068473 original size:26 final size:26
Alignment explanation
Indices: 3068444--3068496 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3068434 TTTACAGTTT
3068444 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
3068470 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
3068496 T
1 T
3068497 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:3074986 original size:42 final size:42
Alignment explanation
Indices: 3074937--3075021 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
3074927 TGTATGCATT
*
3074937 TTAGCATTTTAATAGTTAATGGATGATAATGGATGATGGGCA
1 TTAGCATTTTAATAATTAATGGATGATAATGGATGATGGGCA
3074979 TTAGCATTTTAATAATTAATGGATGATAATGGATGATGGGCA
1 TTAGCATTTTAATAATTAATGGATGATAATGGATGATGGGCA
3075021 T
1 T
3075022 GGTAAGCATT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (42 bp):
TTAGCATTTTAATAATTAATGGATGATAATGGATGATGGGCA
Found at i:3076925 original size:33 final size:34
Alignment explanation
Indices: 3076860--3076925 Score: 82
Period size: 32 Copynumber: 2.0 Consensus size: 34
3076850 CCATACTGTT
*
3076860 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTA
1 ATCTGAATAAGGGGCTAAGGCCCAGTTCATTGTA
**
3076894 ATCTGAA-AA-GGGCTCTGGCCCAGTATCATTGT
1 ATCTGAATAAGGGGCTAAGGCCCAGT-TCATTGT
3076926 TACCTAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 13 0.46
33 8 0.29
34 7 0.25
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (34 bp):
ATCTGAATAAGGGGCTAAGGCCCAGTTCATTGTA
Found at i:3077357 original size:45 final size:45
Alignment explanation
Indices: 3077259--3077349 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
3077249 GGCTAGACTT
*
3077259 AGGGCACGATTTCAAAACGATACTTATTTTTTTTTAAATAACACG
1 AGGGCACGATTTCAAAACGATACTTATTTTTTTTAAAATAACACG
*
3077304 AGGGCACGATTTCAAAATGATACTTATTTTTTTTAAAATAACACG
1 AGGGCACGATTTCAAAACGATACTTATTTTTTTTAAAATAACACG
3077349 A
1 A
3077350 TGTCACGAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.35
Consensus pattern (45 bp):
AGGGCACGATTTCAAAACGATACTTATTTTTTTTAAAATAACACG
Found at i:3081573 original size:24 final size:24
Alignment explanation
Indices: 3081520--3081573 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
3081510 TTCTAATTAA
* *
3081520 ATTTTATAAATAATTAATATTTAT
1 ATTTTAAAAATAATTAAAATTTAT
*
3081544 -TGTTTAAAAATATTTAAAATTTAT
1 AT-TTTAAAAATAATTAAAATTTAT
3081568 ATTTTA
1 ATTTTA
3081574 TATATTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 1 0.04
24 23 0.92
25 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTTTAAAAATAATTAAAATTTAT
Found at i:3083034 original size:29 final size:31
Alignment explanation
Indices: 3082992--3083053 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 31
3082982 TAGTAAAGGT
* * *
3082992 AAAATTACACTTT-AGCCTCATAAAATTATA
1 AAAATTACAATTTAAACCTCAAAAAATTATA
*
3083022 AAAATT-CAATTTAAACCTTAAAAAATTATA
1 AAAATTACAATTTAAACCTCAAAAAATTATA
3083052 AA
1 AA
3083054 GATATAGACT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 5 0.19
30 22 0.81
ACGTcount: A:0.53, C:0.13, G:0.02, T:0.32
Consensus pattern (31 bp):
AAAATTACAATTTAAACCTCAAAAAATTATA
Found at i:3083222 original size:21 final size:21
Alignment explanation
Indices: 3083180--3083222 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
3083170 TCCCTTATAG
*
3083180 TCAATTTAATTTTCATTTTTT
1 TCAATTTAATTTTCATTCTTT
3083201 TCAATTTAATTTTC-TATCTTT
1 TCAATTTAATTTTCAT-TCTTT
3083222 T
1 T
3083223 GGAAGAATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65
Consensus pattern (21 bp):
TCAATTTAATTTTCATTCTTT
Found at i:3083959 original size:2 final size:2
Alignment explanation
Indices: 3083952--3084003 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
3083942 AATTTTAACC
3083952 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3083994 TA TA TA TA TA
1 TA TA TA TA TA
3084004 CAGTTGTACT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3084167 original size:17 final size:16
Alignment explanation
Indices: 3084145--3084188 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
3084135 TAGTAAAAAT
3084145 ATAATTTTAATATTTTA
1 ATAATTTTAA-ATTTTA
*
3084162 ATAA-TTTAAATTTTT
1 ATAATTTTAAATTTTA
3084177 ATAAATTTTAAA
1 AT-AATTTTAAA
3084189 ATATTAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 7 0.29
16 7 0.29
17 10 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATAATTTTAAATTTTA
Found at i:3084183 original size:16 final size:17
Alignment explanation
Indices: 3084144--3084184 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
3084134 ATAGTAAAAA
*
3084144 TATAATTTTAATATTTT
1 TATAAATTTAATATTTT
*
3084161 AAT-AATTTAA-ATTTT
1 TATAAATTTAATATTTT
3084176 TATAAATTT
1 TATAAATTT
3084185 TAAAATATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
15 7 0.35
16 11 0.55
17 2 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATAAATTTAATATTTT
Found at i:3086657 original size:31 final size:31
Alignment explanation
Indices: 3086619--3086681 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
3086609 ATTTGTAATT
* *
3086619 TCTCAATTATTTGGATTAGATTGAAAAACAA
1 TCTCAATTATTTGAATTAGATTCAAAAACAA
3086650 TCTCAATTATTTGAATTAGATTCAAAAACAA
1 TCTCAATTATTTGAATTAGATTCAAAAACAA
3086681 T
1 T
3086682 TGACACTTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.37
Consensus pattern (31 bp):
TCTCAATTATTTGAATTAGATTCAAAAACAA
Found at i:3090110 original size:21 final size:21
Alignment explanation
Indices: 3090084--3090124 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
3090074 ATCTGCTCAA
* *
3090084 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
3090105 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
3090125 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:3094536 original size:23 final size:22
Alignment explanation
Indices: 3094502--3094547 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
3094492 CTGACGTGGC
3094502 GTCTAGTCAGCAATTTCTAGAAA
1 GTCTAGTCAGCAATTTCTA-AAA
*
3094525 GTCTAGTTAGCAATTTCTAAAA
1 GTCTAGTCAGCAATTTCTAAAA
3094547 G
1 G
3094548 AAATTTGGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (22 bp):
GTCTAGTCAGCAATTTCTAAAA
Found at i:3095415 original size:28 final size:28
Alignment explanation
Indices: 3095383--3095437 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
3095373 CAAGGCTGAC
3095383 TTTT-ATCT-CTTGATTTCAATTTCAATCT
1 TTTTAATCTACTTG-TTT-AATTTCAATCT
*
3095411 TTTTAATTTACTTGTTTAATTTCAATC
1 TTTTAATCTACTTGTTTAATTTCAATC
3095438 ATTTACTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 14 0.58
29 6 0.25
30 4 0.17
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTAATCTACTTGTTTAATTTCAATCT
Found at i:3098271 original size:27 final size:28
Alignment explanation
Indices: 3098241--3098297 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
3098231 AAATGAATGG
*
3098241 AATAATTAGTTCTAGTTATTA-AATATA
1 AATAATTAGTTCTAGCTATTATAATATA
*
3098268 AATAATTAGTTCTAGCTATTATACTATA
1 AATAATTAGTTCTAGCTATTATAATATA
3098296 AA
1 AA
3098298 AAAATAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (28 bp):
AATAATTAGTTCTAGCTATTATAATATA
Found at i:3102984 original size:26 final size:26
Alignment explanation
Indices: 3102955--3103093 Score: 176
Period size: 26 Copynumber: 5.3 Consensus size: 26
3102945 AGCATGGCTG
*
3102955 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGAACAGATATATGTGGCAGAG-CA
3102981 CCAGATACAGATA-ATCGTGGCA-AGCCA
1 CCAGA-ACAGATATAT-GTGGCAGAG-CA
3103008 CCAGAACAGATATATGTGGCAGAGCA
1 CCAGAACAGATATATGTGGCAGAGCA
3103034 CCAGAACAGATATATGTGGCAGAGCA
1 CCAGAACAGATATATGTGGCAGAGCA
* * *
3103060 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAG-CA
3103087 CCAGAAC
1 CCAGAAC
3103094 GCTTCCTCCA
Statistics
Matches: 102, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
26 67 0.66
27 30 0.29
28 5 0.05
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATATGTGGCAGAGCA
Found at i:3103222 original size:26 final size:27
Alignment explanation
Indices: 3103193--3103268 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
3103183 CAAAATTAAC
* *
3103193 CCTAGGGGTATAATGGTAATTTTGC-A
1 CCTAGGGGTATAATAGTAATTTTCCAA
*
3103219 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAATAGTAATTTTCCA-A
* *
3103247 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAATAGTAATTT
3103269 AGCTATTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 22 0.52
28 20 0.48
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (27 bp):
CCTAGGGGTATAATAGTAATTTTCCAA
Found at i:3104737 original size:26 final size:26
Alignment explanation
Indices: 3104701--3104808 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
3104691 CATGAAATTC
3104701 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
3104727 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
3104753 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
3104779 TTATCATGGAACATTTACCTAA--CA
1 TTATCATGAAACATTTACCTAACCCA
3104803 TTATCA
1 TTATCA
3104809 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
24 7 0.09
26 72 0.91
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:3108759 original size:27 final size:25
Alignment explanation
Indices: 3108722--3108835 Score: 120
Period size: 27 Copynumber: 4.3 Consensus size: 25
3108712 AGCATGGCTG
*
3108722 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAG-CA
*
3108748 CCAGATACAGATAATCATGGCAGAGCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCA
3108775 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAG-CA
* * *
3108802 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAG-CA
3108829 CCAGAAC
1 CCAGAAC
3108836 GCTTCCTCCA
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.26
27 50 0.65
28 7 0.09
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (25 bp):
CCAGAACAGATAATGTGGCAGAGCA
Found at i:3108822 original size:53 final size:54
Alignment explanation
Indices: 3108722--3108835 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
3108712 AGCATGGCTG
*
3108722 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCATGGCAGAG-CA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCA
* * ** *
3108775 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCA
3108829 CCAGAAC
1 CCAGAAC
3108836 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 26 0.49
54 27 0.51
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCA
Found at i:3108964 original size:26 final size:27
Alignment explanation
Indices: 3108935--3109010 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
3108925 CAAAATTAAC
* *
3108935 CCTAGGGGTATAATGGTAATTTTGC-A
1 CCTAGGGGTATAATAGTAATTTTCCAA
*
3108961 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAATAGTAATTTTCCA-A
* *
3108989 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAATAGTAATTT
3109011 AGCTATTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 22 0.52
28 20 0.48
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (27 bp):
CCTAGGGGTATAATAGTAATTTTCCAA
Found at i:3110556 original size:26 final size:26
Alignment explanation
Indices: 3110447--3110548 Score: 159
Period size: 26 Copynumber: 3.9 Consensus size: 26
3110437 CATGAAATTC
3110447 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
3110473 TTATCATGAAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
3110499 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
3110525 TTATCATGGAATATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
3110549 TTTTATCAAT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:3110556 original size:52 final size:52
Alignment explanation
Indices: 3110447--3110548 Score: 177
Period size: 52 Copynumber: 2.0 Consensus size: 52
3110437 CATGAAATTC
3110447 TTATCATGAAACATTTACCTAACCCATTATCATGAAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAATATTTACCTAACCCA
* * *
3110499 TTATCATGGAACATTTACCTAACCTATTATCATGGAATATTTACCTAACC
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAATATTTACCTAACC
3110549 TTTTATCAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAATATTTACCTAACCCA
Found at i:3115087 original size:20 final size:20
Alignment explanation
Indices: 3115062--3115101 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
3115052 AAAATGTGTA
3115062 AGACCATGGTTGAAAGATAC
1 AGACCATGGTTGAAAGATAC
3115082 AGACCATGGTTGAAAGATAC
1 AGACCATGGTTGAAAGATAC
3115102 CATGGCAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (20 bp):
AGACCATGGTTGAAAGATAC
Found at i:3115105 original size:16 final size:17
Alignment explanation
Indices: 3115064--3115106 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 17
3115054 AATGTGTAAG
3115064 ACCATGGTTGAAAGATACA
1 ACCATGGTTGAAAGAT--A
3115083 GACCATGGTTGAAAGAT-
1 -ACCATGGTTGAAAGATA
3115100 ACCATGG
1 ACCATGG
3115107 CAACATGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.30
20 16 0.70
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (17 bp):
ACCATGGTTGAAAGATA
Found at i:3115122 original size:66 final size:66
Alignment explanation
Indices: 3115016--3115144 Score: 213
Period size: 66 Copynumber: 2.0 Consensus size: 66
3115006 AAAATGTGTA
* * * * *
3115016 AGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATA
1 AGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGATA
3115081 C
66 C
3115082 AGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGA
1 AGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGA
3115145 CACTATGGCA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (66 bp):
AGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGATA
C
Found at i:3117989 original size:28 final size:28
Alignment explanation
Indices: 3117957--3118011 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
3117947 AAAGGCTGAC
3117957 TTTT-ATCT-CTTGATTTCAATTTCAATCT
1 TTTTAATCTACTTG-TTT-AATTTCAATCT
*
3117985 TTTTAATTTACTTGTTTAATTTCAATC
1 TTTTAATCTACTTGTTTAATTTCAATC
3118012 ATTTACTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 14 0.58
29 6 0.25
30 4 0.17
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTAATCTACTTGTTTAATTTCAATCT
Found at i:3124403 original size:49 final size:49
Alignment explanation
Indices: 3124350--3124459 Score: 159
Period size: 49 Copynumber: 2.2 Consensus size: 49
3124340 TCTCATGAAG
*
3124350 ATGATTTTTAAACACCGTGTTAATTGTTTATGAGC-CATCATGTTTGACA
1 ATGATTTTTAAACACCGTGTTAATTGTATAT-AGCACATCATGTTTGACA
** *
3124399 ATGATTTTTAATTACTGTGTTAATTGTATATAGCACATCATGTTTGACA
1 ATGATTTTTAAACACCGTGTTAATTGTATATAGCACATCATGTTTGACA
*
3124448 ATAATTTTTAAA
1 ATGATTTTTAAA
3124460 GACTTTTAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 3 0.06
49 51 0.94
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.44
Consensus pattern (49 bp):
ATGATTTTTAAACACCGTGTTAATTGTATATAGCACATCATGTTTGACA
Found at i:3125701 original size:22 final size:21
Alignment explanation
Indices: 3125673--3125715 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
3125663 AGATGTATAT
3125673 ATATAATATGTATGAAA-ACATA
1 ATATAATAT-TA-GAAATACATA
3125695 ATATAATATTAGAAATACATA
1 ATATAATATTAGAAATACATA
3125716 TACATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 7 0.35
22 9 0.45
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.33
Consensus pattern (21 bp):
ATATAATATTAGAAATACATA
Found at i:3126574 original size:17 final size:20
Alignment explanation
Indices: 3126552--3126600 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 20
3126542 AATACTTCAC
3126552 AAATATACATAT-AC-TA-A
1 AAATATACATATAACGTATA
3126569 AAATATACATGATAACGTATA
1 AAATATACAT-ATAACGTATA
3126590 AAATATA-ATAT
1 AAATATACATAT
3126601 TAAAGACATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 10 0.36
18 2 0.07
19 4 0.14
20 4 0.14
21 8 0.29
ACGTcount: A:0.57, C:0.08, G:0.04, T:0.31
Consensus pattern (20 bp):
AAATATACATATAACGTATA
Found at i:3127474 original size:13 final size:14
Alignment explanation
Indices: 3127441--3127477 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
3127431 AAAAGGTCAG
*
3127441 TTTTTTTTATTATA
1 TTTTTTGTATTATA
3127455 TTTTTTGTATTATA
1 TTTTTTGTATTATA
3127469 -TTTTTGTAT
1 TTTTTTGTAT
3127478 ATTTGGTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (14 bp):
TTTTTTGTATTATA
Found at i:3128970 original size:28 final size:27
Alignment explanation
Indices: 3128918--3129030 Score: 77
Period size: 28 Copynumber: 3.9 Consensus size: 27
3128908 CTATTCAGAA
* *
3128918 ATCAGTGTTAA-CTAGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
*
3128945 ATCAGTATTAATCTGGGCCATAGCCCCT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
**
3128973 -TACAGTAACAGAGTATACTGGGCCTAGCCCAT
1 AT-CAGT-A-TTA--AT-CTGGGCCTAGCCCAT
*
3129005 ATCAGTATCAATCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCC-TAGCCC
3129031 TATTACAAGT
Statistics
Matches: 68, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
27 18 0.26
28 25 0.37
29 1 0.01
30 2 0.03
31 1 0.01
32 13 0.19
33 8 0.12
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (27 bp):
ATCAGTATTAATCTGGGCCTAGCCCAT
Found at i:3129055 original size:60 final size:59
Alignment explanation
Indices: 3128932--3129066 Score: 166
Period size: 60 Copynumber: 2.2 Consensus size: 59
3128922 GTGTTAACTA
* *
3128932 GGCCTTAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG
1 GGCC-TAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTATACTG
* *
3128993 GGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT-C-GAGATATATTG
1 GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TATACTG
*
3129053 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
3129067 TAACATAGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 3 0.05
60 52 0.79
61 8 0.12
62 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (59 bp):
GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGTACAGAGTATACTG
Found at i:3134281 original size:28 final size:27
Alignment explanation
Indices: 3134229--3134341 Score: 77
Period size: 28 Copynumber: 3.9 Consensus size: 27
3134219 CTATTCAGAA
* *
3134229 ATCAGTGTTAA-CTAGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
*
3134256 ATCAGTATTAATCTGGGCCATAGCCCCT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
**
3134284 -TACAGTAACAGAGTATACTGGGCCTAGCCCAT
1 AT-CAGT-A-TTA--AT-CTGGGCCTAGCCCAT
*
3134316 ATCAGTATCAATCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCC-TAGCCC
3134342 TATTACAAGT
Statistics
Matches: 68, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
27 18 0.26
28 25 0.37
29 1 0.01
30 2 0.03
31 1 0.01
32 13 0.19
33 8 0.12
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (27 bp):
ATCAGTATTAATCTGGGCCTAGCCCAT
Found at i:3134366 original size:60 final size:59
Alignment explanation
Indices: 3134243--3134377 Score: 166
Period size: 60 Copynumber: 2.2 Consensus size: 59
3134233 GTGTTAACTA
* *
3134243 GGCCTTAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG
1 GGCC-TAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTATACTG
* *
3134304 GGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT-C-GAGATATATTG
1 GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TATACTG
*
3134364 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
3134378 TAACATAGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 3 0.05
60 52 0.79
61 8 0.12
62 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (59 bp):
GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGTACAGAGTATACTG
Found at i:3139588 original size:28 final size:27
Alignment explanation
Indices: 3139536--3139648 Score: 77
Period size: 28 Copynumber: 3.9 Consensus size: 27
3139526 CTATTCAGAA
* *
3139536 ATCAGTGTTAA-CTAGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
*
3139563 ATCAGTATTAATCTGGGCCATAGCCCCT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
**
3139591 -TACAGTAACAGAGTATACTGGGCCTAGCCCAT
1 AT-CAGT-A-TTA--AT-CTGGGCCTAGCCCAT
*
3139623 ATCAGTATCAATCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCC-TAGCCC
3139649 TATTACAAGT
Statistics
Matches: 68, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
27 18 0.26
28 25 0.37
29 1 0.01
30 2 0.03
31 1 0.01
32 13 0.19
33 8 0.12
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (27 bp):
ATCAGTATTAATCTGGGCCTAGCCCAT
Found at i:3139673 original size:60 final size:59
Alignment explanation
Indices: 3139550--3139684 Score: 166
Period size: 60 Copynumber: 2.2 Consensus size: 59
3139540 GTGTTAACTA
* *
3139550 GGCCTTAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG
1 GGCC-TAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTATACTG
* *
3139611 GGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT-C-GAGATATATTG
1 GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TATACTG
*
3139671 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
3139685 TAACATAGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 3 0.05
60 52 0.79
61 8 0.12
62 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (59 bp):
GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGTACAGAGTATACTG
Found at i:3142933 original size:14 final size:14
Alignment explanation
Indices: 3142914--3142948 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
3142904 GTTGATTTTT
*
3142914 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
3142928 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
3142942 TTGAAAA
1 TTGAAAA
3142949 TTCTTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:3143049 original size:73 final size:71
Alignment explanation
Indices: 3142933--3143079 Score: 215
Period size: 73 Copynumber: 2.0 Consensus size: 71
3142923 AGAAATTGAA
* *
3142933 AAACAGAAATTGAAAATTCTTCAGCGTGCCCTGAGGCTCAACTCACTTATCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATTCCTCAGCGTGCCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGA
3142998 TTTTTG
66 TTTTTG
* * *
3143004 AAACATAAATTGAAAATTCCTCGGCATGTGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAACAGAAATTGAAAATTCCTCAGC--GTG-CCCTGAGGCTCAACTCACCTATCGCAATATGAGT
3143068 TGATTTTTG
63 TGATTTTTG
3143077 AAA
1 AAA
3143080 GAAACAGAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
71 22 0.32
73 43 0.63
74 3 0.04
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (71 bp):
AAACAGAAATTGAAAATTCCTCAGCGTGCCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGA
TTTTTG
Found at i:3143237 original size:167 final size:162
Alignment explanation
Indices: 3142876--3144176 Score: 987
Period size: 167 Copynumber: 7.9 Consensus size: 162
3142866 CATGCGACCC
* *
3142876 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-AAGCAGAAATTGAAAAACAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAGAAACATAAATTGAAAAA-AGA
* * * * *
3142940 AATTGAAAATTCTTCAGC--GTG-CCCTGAGGCTCAACTCACTTATCGCAATATGAGTTGA--TT
63 ATTTGAAAATACCTC-GCATGTGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * *
3143000 TTTG-AAACATAAATTGAAAATT-CCTCGGCATGTGACCC
126 TTTGAAAACAGAAATTG-AAATTACCTCAGC--GTGTCCT
* *
3143038 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGAAACAGAAATTGAAAAACGGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAGAAACATAAATTGAAAAA-AGAA
* * * * * *
3143103 TTTTAAAAATACCTCAGTATGTGGCCCAAGGGTCAACTCATCTCTCGCAATATGAGTTGATTTTT
64 -TTTGAAAATACCTC-GCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
3143168 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCT
127 TTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCT
* *
3143205 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGGAAGAAAAATAAATTAAAAAAAGGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-GAAGAAACATAAATTGAAAAAA-GAA
* * * * *
3143270 TTTTGAAAATACCTTGGTATGTGGCCCGAGGCTCAACTCATCTCTCGCAATATGAGTCGATTTTT
64 -TTTGAAAATACC-TCGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
3143335 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCT
127 TTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCT
* * *
3143372 GAGGCTCAACCCATCTCTGGCAATATGAGTTGATTTTT---GAAAC----A-T------A-AA-T
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAAACATAAATTGAAAAAAGAATT
* * * *
3143421 TGAAAATACCTCGACATGCGACTCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTTGAA
66 TGAAAATACCTCG-CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT---
* * *
3143486 AAACATAAATTGAAAA-ACGAAAATTGAAAATGCCTCAGCGTGTTCT
126 -----T---TTGAAAACA-G-AAATTGAAATTACCTCAGCGTGTCCT
*
3143532 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-A-AAACATAAATTGAAAAACAGATT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAAACATAAATTGAAAAA-AGAAT
3143595 TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
65 TTGAAAATACCTCG-CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* * * *
3143660 GAAAAATAGAAATTAAAAACAGAATTTGAAAAGTCCTCGGCATGTGGGCC-
129 G-AAAACAGAAATT-------GAAATT----A--CCTCAGC--GT-GTCCT
* * * ** * *
3143710 AATGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT---------T-TTTTGAAGAATAGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAAACATAAATTGAA-AAAAGAAT
* * * * *
3143765 TT-AAAATTACCTC-AACGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTT
65 TTGAAAA-TACCTCGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* * *
3143828 GAAAACAGAAACTGAAAATACCTCAGCGTGTAACCC
129 GAAAACAGAAATTGAAATTACCTCAGCGTGT--CCT
* ** *
3143864 GAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTTT-TTGAAACATAAATTGAAAAATAGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAAACATAAATTGAAAAA-AGAAT
* * *
3143928 TTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATATGAGTTGACTATTCT
65 TTGAAAATACCTC-GCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG---A---T
* * * *
3143993 TTTTTTAAAAAAAAAGGAATTGAAAATACCTCAGCGTGTGACCT
123 TTTTTT--GAAAACAGAAATTGAAATTACCTCAGCGTGT--CCT
* * ** * * *
3144037 GAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTTTA-AAACTTAATTTGAAAAGAAGATT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAAACATAAATTGAAAA-AAGAAT
* *
3144101 TTGAAAATACCTCGATATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTT
65 TTGAAAATACCTCG-CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
3144166 -AAAACAGAAAT
129 GAAAACAGAAAT
3144177 AAAACATCAA
Statistics
Matches: 939, Mismatches: 108, Indels: 182
0.76 0.09 0.15
Matches are distributed among these distances:
147 2 0.00
148 46 0.05
149 4 0.00
150 2 0.00
151 1 0.00
152 3 0.00
153 2 0.00
154 40 0.04
156 1 0.00
157 1 0.00
158 2 0.00
159 5 0.01
160 72 0.08
161 6 0.01
162 56 0.06
163 42 0.04
164 18 0.02
165 69 0.07
166 5 0.01
167 216 0.23
168 54 0.06
169 21 0.02
170 20 0.02
171 10 0.01
172 1 0.00
173 134 0.14
174 7 0.01
175 54 0.06
176 6 0.01
178 37 0.04
179 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (162 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAAACATAAATTGAAAAAAGAATT
TGAAAATACCTCGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
AAACAGAAATTGAAATTACCTCAGCGTGTCCT
Found at i:3143468 original size:73 final size:73
Alignment explanation
Indices: 3143296--3143501 Score: 240
Period size: 75 Copynumber: 2.8 Consensus size: 73
3143286 GTATGTGGCC
* * * *
3143296 CGAGGCTCAACTCATCTCTCGCAATATGAGTCGATTTTTTTGACAAACAGAAATTGAAATTACCT
1 CGAGGCTCAACTCATCTCTAGCAATATGAGTTGA--TTTTTGA-AAACATAAATTGAAAATACCT
*
3143361 CAGCGTGTCCT
63 CAGCATGTCCT
* *
3143372 -GAGGCTCAACCCATCTCTGGCAATATGAGTTGATTTTTG-AAACATAAATTGAAAATACCTC-G
1 CGAGGCTCAACTCATCTCTAGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAATACCTCAG
3143434 ACATG-CGACT
66 -CATGTC--CT
* *
3143444 CGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTTGAAAAACATAAATTGAAAA
1 CGAGGCTCAACTCATCTCTAGCAATATGAGTTGATTTTTG-AAAACATAAATTGAAAA
3143502 ACGAAAATTG
Statistics
Matches: 114, Mismatches: 10, Indels: 13
0.83 0.07 0.09
Matches are distributed among these distances:
70 2 0.02
71 23 0.20
72 2 0.02
73 41 0.36
75 46 0.40
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (73 bp):
CGAGGCTCAACTCATCTCTAGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAATACCTCAG
CATGTCCT
Found at i:3143500 original size:14 final size:14
Alignment explanation
Indices: 3143481--3143515 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
3143471 GAATTGATTT
3143481 TTGAAAAAC-ATAAA
1 TTGAAAAACGA-AAA
3143495 TTGAAAAACGAAAA
1 TTGAAAAACGAAAA
3143509 TTGAAAA
1 TTGAAAA
3143516 TGCCTCAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 19 0.95
15 1 0.05
ACGTcount: A:0.63, C:0.06, G:0.11, T:0.20
Consensus pattern (14 bp):
TTGAAAAACGAAAA
Found at i:3143646 original size:88 final size:88
Alignment explanation
Indices: 3143411--3143747 Score: 391
Period size: 90 Copynumber: 3.8 Consensus size: 88
3143401 TTGATTTTTG
* * * * * *
3143411 AAACATAAATTGAAAATACCTCGACATGCGACTCGAGGCTCAACTCACCTCTAGCAATATGAATT
1 AAACAGAATTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
3143476 GATTTTTGAAAAACATAAATTGAA
66 GATTTTTG-AAAACATAAATTGAA
* * ** *
3143500 AAAC-GAAAATTGAAAATGCCTC-AGC--GTGTTCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAACAG-AATTTGAAAATACCTCGA-CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
3143561 TTGATTTTTGAAAACATAAATTGAA
64 TTGATTTTTGAAAACATAAATTGAA
*
3143586 AAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAACAGAATTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
3143651 GATTTTTTTGAAAA-ATAGAAATT-AA
66 GA--TTTTTGAAAACAT--AAATTGAA
* ** * *
3143676 AAACAGAATTTGAAAAGT-CCTCGGCATGTGGGCCAATGCTCAACTCACCTCTCGCAATATGAGT
1 AAACAGAATTTGAAAA-TACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
3143740 TAATTTTT
65 TGATTTTT
3143748 TTTTTGAAGA
Statistics
Matches: 215, Mismatches: 22, Indels: 23
0.83 0.08 0.09
Matches are distributed among these distances:
86 33 0.15
87 41 0.19
88 43 0.20
89 22 0.10
90 70 0.33
91 6 0.03
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (88 bp):
AAACAGAATTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAACATAAATTGAA
Found at i:3143868 original size:244 final size:246
Alignment explanation
Indices: 3143596--3144169 Score: 655
Period size: 244 Copynumber: 2.3 Consensus size: 246
3143586 AAACAGATTT
*
3143596 TGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
1 TGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * *
3143661 AAAAATAGAAATT-AAAAACAGAATTTGAAAAGT-CCTCGGCATGTGGGCC-AATGCTCAACTCA
66 AAAAAT--AAATTGAAAAACAGAAATTGAAAA-TACCTCGGCATGT-GACCTAAGGCTCAACTCA
** * *
3143723 CCTCTCGCAATATGAGTT-A-ATT-TTTTTTTTGAAGAATAGAAATT-AAAATTACCTCAACGTG
127 CCTCTCGCAATATGAGTTGACATTCTTTTTTTAAAAAAAAAGAAATTGAAAA-TACCTCAACGTG
**
3143784 T-CCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAAACAGAAAC
191 TACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTT-AAAACAGAAAC
* *
3143840 TGAAAATACCTC-AGCGTGTAACCCGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTTTTT
1 TGAAAATACCTCGA-CATGTAACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* * * * *
3143904 GAAACATAAATTGAAAAATAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCT
65 GAAAAATAAATTGAAAAACAGAAATTGAAAATACCTCGGCATGTGACCTAAGGCTCAACTCACCT
* *
3143969 CTCGCAATATGAGTTGACTATTCTTTTTTTAAAAAAAAAGGAATTGAAAATACCTCAGCGTGTGA
130 CTCGCAATATGAGTTGAC-ATTCTTTTTTTAAAAAAAAAGAAATTGAAAATACCTCAACGTGT-A
*
3144034 CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTTTAAAACTTAATTTGAAAAGAAGA
193 CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTAAAAC-----------AGAA-A
*
3144099 TTT
246 --C
* * *
3144102 TGAAAATACCTCGATATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTT-
1 TGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
3144166 AAAA
66 AAAA
3144170 CAGAAATAAA
Statistics
Matches: 277, Mismatches: 27, Indels: 35
0.82 0.08 0.10
Matches are distributed among these distances:
242 9 0.03
243 55 0.20
244 66 0.24
246 3 0.01
247 29 0.10
248 9 0.03
249 40 0.14
259 4 0.01
260 1 0.00
261 3 0.01
262 57 0.21
263 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (246 bp):
TGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
AAAAATAAATTGAAAAACAGAAATTGAAAATACCTCGGCATGTGACCTAAGGCTCAACTCACCTC
TCGCAATATGAGTTGACATTCTTTTTTTAAAAAAAAAGAAATTGAAAATACCTCAACGTGTACCT
GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTAAAACAGAAAC
Found at i:3143887 original size:76 final size:74
Alignment explanation
Indices: 3143713--3143920 Score: 258
Period size: 76 Copynumber: 2.7 Consensus size: 74
3143703 GTGGGCCAAT
* * *
3143713 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTTGAAGAATAGAAATTAAAATTACCTC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAA-AACAGAAATGAAAATTACCTC
*
3143778 AACGTGTCCTGAG
62 AACGTGTCCCGAG
* *
3143791 GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAAACAGAAACTGAAAA-TACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAA-TGAAAATTACCTCAAC
3143855 GTGTAACCCGAG
65 GTGT--CCCGAG
* *
3143867 GCTCAACTCGCCTCTCGCAATATGAGTTGATTTTTTTG-AAACATAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAA-TGAAAA
3143921 ATAGAAATTG
Statistics
Matches: 117, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
74 19 0.16
75 29 0.25
76 41 0.35
78 28 0.24
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (74 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATGAAAATTACCTCAACG
TGTCCCGAG
Found at i:3144038 original size:84 final size:81
Alignment explanation
Indices: 3143917--3144165 Score: 245
Period size: 84 Copynumber: 3.0 Consensus size: 81
3143907 ACATAAATTG
* * *
3143917 AAAAATAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
3143982 TTGACTATTCTTTTTTTAA
66 TTGA--ATT-TTTTTTTAA
* *
3144001 AAAAAAAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
3144066 TTG--GTTTTTTTAAA
66 TTGAATTTTTTTTTAA
** *
3144080 ACTTAATTTGAAAAGAAGATTTTGAAAATACCTC-GATATGTGACCCGAGGCTCAACTCACCTCT
1 A---AA----AAAAGAA-A--TTGAAAATACCTCAG-CGTGTGACCTGAGGCTCAACTCACCTCT
*
3144144 CGCAATATGAGTTG-GTTTTTTT
55 CGCAATATGAGTTGAATTTTTTT
3144166 AAAACAGAAA
Statistics
Matches: 140, Mismatches: 13, Indels: 18
0.82 0.08 0.11
Matches are distributed among these distances:
79 9 0.06
80 1 0.01
82 2 0.01
84 63 0.45
86 6 0.04
87 1 0.01
88 1 0.01
89 51 0.36
90 6 0.04
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (81 bp):
AAAAAAAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGAATTTTTTTTTAA
Found at i:3144066 original size:173 final size:171
Alignment explanation
Indices: 3143417--3144165 Score: 645
Period size: 173 Copynumber: 4.4 Consensus size: 171
3143407 TTTGAAACAT
* * * *
3143417 AAATTGAAAATACCTCGACATGCGACTCGAGGCTCAACTCACCTCTAGCAATATGAATTGAT-TT
1 AAATTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATT
**** * * * *
3143481 TTGAAAAACATAAATTGAAAAACGAAAATTGAAAATGCCTCAGCGTGT--TCTGAGGCTCAACTC
66 TT----TTTTTAAA---AAAAAAG-GAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTC
*
3143544 ACCTCTCGCAATATGAGTTGA--TTTTTGAAAACATAAATTGAAAAACAG
123 ACCTCTCGCAATATGAGTTGATTTTTTTG-AAACATAAATTGAAAAATAG
**
3143592 ATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TT
1 AAATTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATT
** * * * * * *
3143656 TTTTGAAAAATAGAAATTAAAAACAGAATTTGAAAAGT-CCTCGGCATGTGGGCC-AATGCTCAA
66 TTTT----TTTA-AAA--AAAAA-GGAA-TTGAAAA-TACCTCAGCGTGT-GACCTGAGGCTCAA
* *
3143719 CTCACCTCTCGCAATATGAGTTAATTTTTTT------T---TTGAAGAATAG
120 CTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAAATAG
* * * *
3143762 AAATT-AAAATTACCTC-A-ACGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTG--A-
1 AAATTGAAAA-TACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAT
* * * * * * *
3143821 -TTTTTTT--GAAAACAGAAACTGAAAATACCTCAGCGTGTAACCCGAGGCTCAACTCGCCTCTC
65 TTTTTTTTAAAAAAAAAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTC
3143883 GCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAAATAG
130 GCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAAATAG
* * * *
3143925 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATATGAGTTGACTAT
1 AAATTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TAT
3143990 TCTTTTTTTAAAAAAAAAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCT
65 T-TTTTTTTAAAAAAAAAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCT
* * * * *
3144055 CACAATATGAGTTGGTTTTTTTAAAACTTAATTTGAAAAGA-AG
129 CGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAA-ATAG
** * *
3144098 ATTTTGAAAATACCTCGATATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGT-TT
1 AAATTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATT
3144162 TTTT
66 TTTT
3144166 AAAACAGAAA
Statistics
Matches: 466, Mismatches: 68, Indels: 85
0.75 0.11 0.14
Matches are distributed among these distances:
153 3 0.01
154 51 0.11
155 2 0.00
156 4 0.01
158 1 0.00
160 1 0.00
161 1 0.00
163 21 0.05
164 4 0.01
165 40 0.09
168 38 0.08
169 5 0.01
170 22 0.05
171 9 0.02
172 1 0.00
173 138 0.30
174 1 0.00
175 69 0.15
176 18 0.04
177 1 0.00
178 30 0.06
179 1 0.00
180 5 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (171 bp):
AAATTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATT
TTTTTTTAAAAAAAAAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTTGAAACATAAATTGAAAAATAG
Found at i:3155753 original size:13 final size:13
Alignment explanation
Indices: 3155735--3155765 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3155725 GTTTTTTTGT
*
3155735 TTTTTTTGTTATA
1 TTTTTTTATTATA
3155748 TTTTTTTATTATA
1 TTTTTTTATTATA
3155761 TTTTT
1 TTTTT
3155766 GTATATTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (13 bp):
TTTTTTTATTATA
Found at i:3156048 original size:2 final size:2
Alignment explanation
Indices: 3156041--3156083 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
3156031 TTTTATAGCC
3156041 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3156083 T
1 T
3156084 TACAAGTTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:3157398 original size:107 final size:108
Alignment explanation
Indices: 3157219--3157435 Score: 400
Period size: 107 Copynumber: 2.0 Consensus size: 108
3157209 TGAACTTTTT
*
3157219 TTGTTTAAATTAATCTTAAAATTTGATAATTTTTTTTTAATTTAGTCATTAAACATTGGTCAATG
1 TTGTTTAAATTAATCTTAAAATTTGATAATTTTTTTTTAATTTACTCATTAAACATTGGTCAATG
* *
3157284 CTACATCATTACTTGTAATTTTTTTTTAAAAAAATTCTTCCTA
66 CTACATCATTACTTGGAATTTTTTTTAAAAAAAATTCTTCCTA
3157327 TTGTTTAAATTAATCTTAAAATTTGATAA-TTTTTTTTAATTTACTCATTAAACATTGGTCAATG
1 TTGTTTAAATTAATCTTAAAATTTGATAATTTTTTTTTAATTTACTCATTAAACATTGGTCAATG
3157391 CTACATCATTACTTGGAATTTTTTTTAAAAAAAATTCTTCCTA
66 CTACATCATTACTTGGAATTTTTTTTAAAAAAAATTCTTCCTA
3157434 TT
1 TT
3157436 CTTTTTAGAT
Statistics
Matches: 106, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
107 77 0.73
108 29 0.27
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.49
Consensus pattern (108 bp):
TTGTTTAAATTAATCTTAAAATTTGATAATTTTTTTTTAATTTACTCATTAAACATTGGTCAATG
CTACATCATTACTTGGAATTTTTTTTAAAAAAAATTCTTCCTA
Found at i:3157414 original size:54 final size:54
Alignment explanation
Indices: 3157246--3157416 Score: 131
Period size: 54 Copynumber: 3.2 Consensus size: 54
3157236 AAAATTTGAT
* *
3157246 AATTTTTTTTTAATTTAGTCATTAAACATTGGTCAATGCTACATCATTACTTGT
1 AATTTTTTTTTAATTTACTCATTAAACATTGGTCAATGCTACATCATTACTTGG
*** * * * * * *
3157300 AATTTTTTTTTAAAAAAATTC-TT--CCTATTGTTTAAAT--TA-ATC-TTAAAATTTG
1 AATTTTTTTTT-AATTTACTCATTAAAC-ATTG-GTCAATGCTACATCATT--ACTTGG
*
3157352 ATAATTTTTTTTAATTTACTCATTAAACATTGGTCAATGCTACATCATTACTTGG
1 A-ATTTTTTTTTAATTTACTCATTAAACATTGGTCAATGCTACATCATTACTTGG
3157407 AATTTTTTTT
1 AATTTTTTTT
3157417 AAAAAAAATT
Statistics
Matches: 83, Mismatches: 21, Indels: 26
0.64 0.16 0.20
Matches are distributed among these distances:
50 2 0.02
51 3 0.04
52 12 0.14
53 19 0.23
54 29 0.35
55 13 0.16
56 3 0.04
57 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.50
Consensus pattern (54 bp):
AATTTTTTTTTAATTTACTCATTAAACATTGGTCAATGCTACATCATTACTTGG
Found at i:3159687 original size:27 final size:26
Alignment explanation
Indices: 3159627--3159688 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
3159617 ATAACACCCC
*
3159627 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAA
* * *
3159653 ATAATTATTAGGATTATTTAATTTTAAA
1 AT-TTTATTAGGA-TAATTAATATTAAA
3159681 ATTTTATT
1 ATTTTATT
3159689 TTAATTTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 14 0.48
28 13 0.45
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAA
Found at i:3163218 original size:25 final size:26
Alignment explanation
Indices: 3163168--3163299 Score: 209
Period size: 25 Copynumber: 5.2 Consensus size: 26
3163158 TGATACAAAT
3163168 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
3163194 TAATAATAGGTTAGG-AAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* *
3163219 TAATAATAGGTTAGGT-AATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
3163244 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
3163269 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
3163294 TGATAA
1 TGATAA
3163300 GAATTTCATG
Statistics
Matches: 99, Mismatches: 4, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
24 13 0.13
25 68 0.69
26 18 0.18
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:3165360 original size:136 final size:136
Alignment explanation
Indices: 3165080--3165364 Score: 527
Period size: 135 Copynumber: 2.1 Consensus size: 136
3165070 GAGTAGTCTC
3165080 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
3165145 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGCCCAGTACCA
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGCCCAGTACCA
3165210 CTGTTA
131 CTGTTA
*
3165216 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
3165280 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAAT-TGAAAAGGGCTCTGGCCCAGTACC
3165345 ACTGTTA
130 ACTGTTA
**
3165352 CCTGAATGGGCTT
1 CCCAAATGGGCTT
3165365 AGGCCCAATG
Statistics
Matches: 145, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
135 83 0.57
136 62 0.43
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:3169379 original size:22 final size:24
Alignment explanation
Indices: 3169349--3169392 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
3169339 AATCCAACGA
3169349 TTAAGTTA-TTGATTT-ATAAACC
1 TTAAGTTATTTGATTTAATAAACC
*
3169371 TTAATTTATTTGATTTAATAAA
1 TTAAGTTATTTGATTTAATAAA
3169393 AGAAATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 7 0.37
24 5 0.26
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.50
Consensus pattern (24 bp):
TTAAGTTATTTGATTTAATAAACC
Found at i:3171193 original size:21 final size:21
Alignment explanation
Indices: 3171151--3171193 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
3171141 TCCTTTATAG
*
3171151 TCAATTTAATTTTCATTTTTT
1 TCAATTTAATTTTCATTCTTT
3171172 TCAATTTAATTTTC-TATCTTT
1 TCAATTTAATTTTCAT-TCTTT
3171193 T
1 T
3171194 GGAAGAGTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65
Consensus pattern (21 bp):
TCAATTTAATTTTCATTCTTT
Found at i:3172224 original size:27 final size:28
Alignment explanation
Indices: 3172187--3172325 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 28
3172177 AGCATGGCTG
* *
3172187 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
3172213 CCAGATACAGATA-ATCGTGGCAG-GCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
*
3172240 CCAGA-ACAGAGATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
3172267 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
3172294 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
3172321 CCAGA
1 CCAGA
3172326 ATGCTTCCTC
Statistics
Matches: 102, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
26 18 0.18
27 78 0.76
28 6 0.06
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:3172269 original size:54 final size:54
Alignment explanation
Indices: 3172187--3172325 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
3172177 AGCATGGCTG
* *
3172187 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAG-GCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
3172240 CCAGAACAGAGATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
* * *
3172294 CCAGATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGA
3172326 ATGCTTCCTC
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
53 25 0.33
54 50 0.67
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:3172490 original size:28 final size:26
Alignment explanation
Indices: 3172430--3172501 Score: 67
Period size: 24 Copynumber: 2.8 Consensus size: 26
3172420 AAATTAACCC
* *
3172430 TAGGGGTATAACGGTAATTTTACACC
1 TAGGGGTATAACAGTAATTTTACACA
*
3172456 TA--GGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTT--ACACA
* *
3172482 TAGGGGTATTATAGTAATTT
1 TAGGGGTATAACAGTAATTT
3172502 AGCTACTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
24 16 0.43
26 7 0.19
28 14 0.38
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.36
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTACACA
Found at i:3173975 original size:26 final size:26
Alignment explanation
Indices: 3173937--3174072 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
3173927 CATGATATTC
*
3173937 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
3173963 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
3173989 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
3174015 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
3174041 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
3174067 TTATCA
1 TTATCA
3174073 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:3174740 original size:26 final size:26
Alignment explanation
Indices: 3174711--3174818 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
3174701 TGGTACAAAT
3174711 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
*
3174737 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
3174763 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
3174789 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
3174815 TGAT
1 TGAT
3174819 GGGTATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 75 0.97
27 2 0.03
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:3178576 original size:21 final size:21
Alignment explanation
Indices: 3178551--3178609 Score: 91
Period size: 21 Copynumber: 2.7 Consensus size: 21
3178541 TATTCACATG
3178551 CCAACCAACCAATTTATTATT
1 CCAACCAACCAATTTATTATT
3178572 CCAACCAACCAATTTATTATT
1 CCAACCAACCAATTTATTATT
*
3178593 CACATGCCAACCAATTT
1 C-CA-ACCAACCAATTT
3178610 GTTTTATTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
21 22 0.63
22 2 0.06
23 11 0.31
ACGTcount: A:0.37, C:0.31, G:0.02, T:0.31
Consensus pattern (21 bp):
CCAACCAACCAATTTATTATT
Found at i:3181051 original size:42 final size:42
Alignment explanation
Indices: 3180983--3181137 Score: 224
Period size: 42 Copynumber: 3.7 Consensus size: 42
3180973 TGAAAGACTT
*
3180983 TGGTTTTTCTTTATTAAAAAGGAGTCTTAAACACCACCGCCA
1 TGGTTTTTCTTTATTGAAAAGGAGTCTTAAACACCACCGCCA
* *
3181025 TGGTTTTTTTTTATTG-AAAGGAAGTCTTAAATACCACCGCCA
1 TGGTTTTTCTTTATTGAAAAGG-AGTCTTAAACACCACCGCCA
* * *
3181067 TAGTTTTTCTTTATTGAAAAGGAGTCTTAAACACCACCACCG
1 TGGTTTTTCTTTATTGAAAAGGAGTCTTAAACACCACCGCCA
3181109 TGGTTTTTCTTT-TTCGAAAAGGAGTCTTA
1 TGGTTTTTCTTTATT-GAAAAGGAGTCTTA
3181138 CTCGTAGTAG
Statistics
Matches: 101, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
41 7 0.07
42 89 0.88
43 5 0.05
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37
Consensus pattern (42 bp):
TGGTTTTTCTTTATTGAAAAGGAGTCTTAAACACCACCGCCA
Found at i:3185994 original size:21 final size:21
Alignment explanation
Indices: 3185965--3186006 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
3185955 TATTCACATG
3185965 CCAAACAACCAATTTATTATT
1 CCAAACAACCAATTTATTATT
*
3185986 CCAACCAACCAATTTATTATT
1 CCAAACAACCAATTTATTATT
3186007 TACATGCCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.33
Consensus pattern (21 bp):
CCAAACAACCAATTTATTATT
Found at i:3187422 original size:88 final size:88
Alignment explanation
Indices: 3187317--3187491 Score: 296
Period size: 88 Copynumber: 2.0 Consensus size: 88
3187307 GAAGAAAAGT
*
3187317 GCCTTATCTTTTTTTTTAGTGTATGTATCATGGTCCTATTGATGTGGTACAAGTTTAGTTCTTTT
1 GCCTTATCTTTGTTTTTAGTGTATGTATCATGGTCCTATTGATGTGGTACAAGTTTAGTTCTTTT
*
3187382 GAGTGTGTCTTGAGATGTGAAGC
66 GAGAGTGTCTTGAGATGTGAAGC
** *
3187405 GCCTTATCTTTGTTTTTAGTGTATGTATTGTGGTCCTGTTGATGTGGTACAAGTTTAGTTCTTTT
1 GCCTTATCTTTGTTTTTAGTGTATGTATCATGGTCCTATTGATGTGGTACAAGTTTAGTTCTTTT
*
3187470 GAGAGTGTCTTGTGATGTGAAG
66 GAGAGTGTCTTGAGATGTGAAG
3187492 TATGTTTTGT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 81 1.00
ACGTcount: A:0.17, C:0.10, G:0.26, T:0.47
Consensus pattern (88 bp):
GCCTTATCTTTGTTTTTAGTGTATGTATCATGGTCCTATTGATGTGGTACAAGTTTAGTTCTTTT
GAGAGTGTCTTGAGATGTGAAGC
Found at i:3188987 original size:33 final size:33
Alignment explanation
Indices: 3188910--3188988 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
3188900 GATCAACATG
3188910 GTATCAGTACAGTCTGAGCCGAAACCCTATTCA
1 GTATCAGTACAGTCTGAGCCGAAACCCTATTCA
* * *
3188943 ATAAT-AGTACAGTCTGGGCCGAAGCCCTATTCA
1 GT-ATCAGTACAGTCTGAGCCGAAACCCTATTCA
*
3188976 GTATCAATACAGT
1 GTATCAGTACAGT
3188989 ACGAAATGCA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
32 2 0.05
33 35 0.90
34 2 0.05
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (33 bp):
GTATCAGTACAGTCTGAGCCGAAACCCTATTCA
Done.