Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 100 of 427
Found at i:26438430 original size:297 final size:297
Alignment explanation
Indices: 26437879--26438582 Score: 902
Period size: 297 Copynumber: 2.4 Consensus size: 297
26437869 TGCCTCGGAT
* * *
26437879 GTGCGGGAGCATCGGACACCATCGGCAAACTAGGCCACTGGTTGTGCAGGAGCCTCGGGCACCAT
1 GTGCGGGAGCATCGG-CACCATCGGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGCACCAT
* * * * * *
26437944 CGGTAATCGAGGCCCTTGGTCGTACGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCATGATCG
65 CGGTAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCAGCAACCTAGGCCCATGATCC
* * * *
26438009 TGCGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCTTCGTCGTGCGGGAGCCTCGGGCACCATC
130 TGCGGGAGCCTCGGGCACCATCAG-AACCTAGGCCCTTCGTCGTGCAGCAGCCCCGGACACCATC
* *
26438074 GATACCTAGGCCCCTAGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGT
194 GATACCTAGGCCCCTAGTCGTGCGGGAGCCTCAGGCACCATCGACACCTTGGTGCTTGGATGTG-
26438139 AGG-AGCCTCGGACACCATCGACAACCAAGGCCCATGGTC
258 AGGCAGCCTCGGACACCATCGACAACCAAGGCCCATGGTC
* * * *
26438178 GTGCGGGAGCGTCAGGCACCATCGGCAACCTAAGCCCCTAGTTGTGCGGGAGCCTTGGGCACCAT
1 GTGCGGGAGCATC-GGCACCATCGGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGCACCAT
* * * * *
26438243 CGATAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGG-ACCATCAGC-ACCTAGGCCCTTGGTCC
65 CGGTAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCAGCAACCTAGGCCCATGATCC
** * ** *
26438306 T-CTGGGAGCCTCGGGCATTATCA-ACACCTTGGTGCTTGGAT-GTGCAGCAGCCCCGGACACCA
130 TGC-GGGAGCCTCGGGCACCATCAGA-ACCTAGGCCCTTCG-TCGTGCAGCAGCCCCGGACACCA
*
26438368 TCGGCA-ACCTAGGCCCTTAGTCGTGCGGGAGCCTCAGGCACCATCGACACCTTGGTGCTTGGAT
192 TC-G-ATACCTAGGCCCCTAGTCGTGCGGGAGCCTCAGGCACCATCGACACCTTGGTGCTTGGAT
* ** * *
26438432 GTGCGGCAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTC
255 GTGAGGCAGCCTCGGACACCATCGACAACCAAGGCCCATGGTC
* * *
26438475 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGGCACCAT
1 GTGCGGGAGCATC-GGCACCATCGGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGCACCAT
*
26438540 TGGTAACCTAGG-CCTTGGTCGTACGAGAGCCTCGGGCACCATC
65 CGGTAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATC
26438583 GACACATTGG
Statistics
Matches: 350, Mismatches: 47, Indels: 18
0.84 0.11 0.04
Matches are distributed among these distances:
295 1 0.00
296 54 0.15
297 199 0.57
298 9 0.03
299 85 0.24
300 2 0.01
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.18
Consensus pattern (297 bp):
GTGCGGGAGCATCGGCACCATCGGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGCACCATC
GGTAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCAGCAACCTAGGCCCATGATCCT
GCGGGAGCCTCGGGCACCATCAGAACCTAGGCCCTTCGTCGTGCAGCAGCCCCGGACACCATCGA
TACCTAGGCCCCTAGTCGTGCGGGAGCCTCAGGCACCATCGACACCTTGGTGCTTGGATGTGAGG
CAGCCTCGGACACCATCGACAACCAAGGCCCATGGTC
Found at i:26438778 original size:128 final size:127
Alignment explanation
Indices: 26438475--26438806 Score: 341
Period size: 128 Copynumber: 2.6 Consensus size: 127
26438465 GCCCTTGGTC
* ** * * * *
26438475 GTGCGGGAGCCTCGGGCACCATC-GGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGGCACCA
1 GTGCGGAAGCCTCGAACACCATCAGG-AACCTAGGCTCTTGGTCGTGTGGGAGCCTCGGGCACCA
* * * **
26438539 TTGGTAACCTAGGCCTTGGTCGTACGAGAGCCTCGGGCACCATCGACACATTGGTGCTTGGAT
65 TAGGTAACCTAGGCCTTGGTCGTACGAGAGCCTCGGACACCATCGACACATTAGTGCTCAGAT
26438602 GTGCGGAAGCCTCGAACACCATCAGGAACCTAGGCTCTTGGTCGTGTGGGAGCCTCGGGCACCAT
1 GTGCGGAAGCCTCGAACACCATCAGGAACCTAGGCTCTTGGTCGTGTGGGAGCCTCGGGCACCAT
* * * * * *
26438667 CGGTAACCTACGGCCTTGGTCGTGCGGGAGCCTCGGACACCATTGGCACCTTAGTGCCTCAGAT
66 AGGTAACCTA-GGCCTTGGTCGTACGAGAGCCTCGGACACCATCGACACATTAGTG-CTCAGAT
* * * * * **
26438731 GTGCGAGAA-CCTCGAGCAGCAT-TGGCACCTTGG-TGCTTGGAT-GTGTGGGAGCCTCGAACAC
1 GTGCG-GAAGCCTCGAACACCATCAGGAACCTAGGCT-CTTGG-TCGTGTGGGAGCCTCGGGCAC
*
26438792 CATAGGCAACCTAGG
63 CATAGGTAACCTAGG
26438807 ACGTTGGATG
Statistics
Matches: 173, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
127 67 0.39
128 81 0.47
129 22 0.13
130 3 0.02
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (127 bp):
GTGCGGAAGCCTCGAACACCATCAGGAACCTAGGCTCTTGGTCGTGTGGGAGCCTCGGGCACCAT
AGGTAACCTAGGCCTTGGTCGTACGAGAGCCTCGGACACCATCGACACATTAGTGCTCAGAT
Found at i:26438822 original size:43 final size:42
Alignment explanation
Indices: 26437834--26438818 Score: 252
Period size: 43 Copynumber: 23.1 Consensus size: 42
26437824 TGGTGCTCGA
* * * * *
26437834 ATGTGCGGGAGCCTCGAGCAGCATCGAC-ACCTTAGTGCCTCGG
1 ATGTGCGGGAGCCTCGAACACCATAGGCAACC-TAG-GCCTTGG
* * * * *
26437877 ATGTGCGGGAGCATCGGACACCATCGGCAAACTAGGCCACTGG
1 ATGTGCGGGAGCCTCGAACACCATAGGCAACCTAGGCC-TTGG
* * ** * * * *
26437920 TTGTGCAGGAGCCTCGGGCACCATCGGTAATCGAGGCCCTTGG
1 ATGTGCGGGAGCCTCGAACACCATAGGCAACCTAGG-CCTTGG
* * ** * *
26437963 -TCGTACGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCAT-G
1 AT-GTGCGGGAGCCTCGAACACCATAGGCAACCTAGG-CCTTGG
** * *
26438005 ATCGTGCGGGAGCCTCGGGCACCATCA-GTAACCTAGGCCCTTCG
1 AT-GTGCGGGAGCCTCGAACACCAT-AGGCAACCTAGG-CCTTGG
** * * *
26438049 -TCGTGCGGGAGCCTCGGGCACCAT-CG-ATACCTAGGCCCCTAG
1 AT-GTGCGGGAGCCTCGAACACCATAGGCA-ACCTAGG-CCTTGG
** * * *
26438091 -TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGG
1 AT-GTGCGGGAGCCTCGAACACCATAGGCAACCTAGG-CCTTGG
** * * * * *
26438133 ATGTGTAGGAGCCTCGGACACCATCGACAACCAAGGCCCATGG
1 ATGTGCGGGAGCCTCGAACACCATAGGCAACCTAGG-CCTTGG
* * * * * *
26438176 -TCGTGCGGGAGCGTC-AGGCACCATCGGCAACCTAAGCCCCTAG
1 AT-GTGCGGGAGCCTCGA-ACACCATAGGCAACCT-AGGCCTTGG
* * ** * **
26438219 TTGTGCGGGAGCCTTGGGCACCATCGATAACCTAGGCCCTTGG
1 ATGTGCGGGAGCCTCGAACACCATAGGCAACCTAGG-CCTTGG
** **
26438262 -TCGTGCAAGAGCCTCG-GGACCATCA-GC-ACCTAGGCCCTTGG
1 AT-GTGCGGGAGCCTCGAACACCAT-AGGCAACCTAGG-CCTTGG
* ** ** * * *
26438303 -TCCT-CTGGGAGCCTCGGGCATTATCA-AC-ACCTTGGTGCTTGG
1 AT-GTGC-GGGAGCCTCGAACACCAT-AGGCAACCTAGG-CCTTGG
* * * * * *
26438345 ATGTGCAGCAGCCCCGGACACCATCGGCAACCTAGGCCCTTAG
1 ATGTGCGGGAGCCTCGAACACCATAGGCAACCTAGG-CCTTGG
* * * * *
26438388 -TCGTGCGGGAGCCTC-AGGCACCATCGAC-ACCTTGGTGCTTGG
1 AT-GTGCGGGAGCCTCGA-ACACCATAGGCAACCTAGG-CCTTGG
* * * *
26438430 ATGTGCGGCAGCCTCGGACACCATCGGTAACCTAGGCCCTTGG
1 ATGTGCGGGAGCCTCGAACACCATAGGCAACCTAGG-CCTTGG
** * *
26438473 -TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG
1 AT-GTGCGGGAGCCTCGAACACCATAGGCAACCTAGG-CCTTGG
* * *
26438516 -TCGTGCGGGAGCCTC-AGGCACCATTGGTAACCTAGGCCTTGG
1 AT-GTGCGGGAGCCTCGA-ACACCATAGGCAACCTAGGCCTTGG
* * ** * * * * *
26438558 -TCGTACGAGAGCCTCGGGCACCATCGAC-ACATTGGTGCTTGG
1 AT-GTGCGGGAGCCTCGAACACCATAGGCAACCTAGG-CCTTGG
*
26438600 ATGTGCGGAAGCCTCGAACACCATCAGG-AACCTAGGCTCTTGG
1 ATGTGCGGGAGCCTCGAACACCAT-AGGCAACCTAGGC-CTTGG
* ** * *
26438643 -TCGTGTGGGAGCCTCGGGCACCATCGGTAACCTACGGCCTTGG
1 AT-GTGCGGGAGCCTCGAACACCATAGGCAACCTA-GGCCTTGG
* * **
26438686 -TCGTGCGGGAGCCTCGGACACCATTGGC-ACCTTAGTGCCTCAG
1 AT-GTGCGGGAGCCTCGAACACCATAGGCAACC-TAG-GCCTTGG
* * * * * * *
26438729 ATGTGCGAGAACCTCGAGCAGCATTGGC-ACCTTGGTGCTTGG
1 ATGTGCGGGAGCCTCGAACACCATAGGCAACCTAGG-CCTTGG
* *
26438771 ATGTGTGGGAGCCTCGAACACCATAGGCAACCTAGGACGTTGG
1 ATGTGCGGGAGCCTCGAACACCATAGGCAACCTAGG-CCTTGG
26438814 ATGTG
1 ATGTG
26438819 TGGGGCACCC
Statistics
Matches: 726, Mismatches: 168, Indels: 96
0.73 0.17 0.10
Matches are distributed among these distances:
40 1 0.00
41 32 0.04
42 229 0.32
43 452 0.62
44 12 0.02
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.19
Consensus pattern (42 bp):
ATGTGCGGGAGCCTCGAACACCATAGGCAACCTAGGCCTTGG
Found at i:26445319 original size:49 final size:47
Alignment explanation
Indices: 26445152--26445339 Score: 286
Period size: 47 Copynumber: 4.0 Consensus size: 47
26445142 TGTAGGAGAT
26445152 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
26445199 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* * *
26445246 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGT
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* *** *
26445293 GTATATATATGTGGTGTTGCCTAATGGCCGATGTGATGAATGTGAAA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
26445340 CATATGTGTG
Statistics
Matches: 131, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 92 0.70
49 39 0.30
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:26445387 original size:48 final size:48
Alignment explanation
Indices: 26445331--26445529 Score: 337
Period size: 48 Copynumber: 4.2 Consensus size: 48
26445321 CGATGTGATG
*
26445331 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* * *
26445379 AATGTGAAATATATGTGTAATGTGTATATGT-GTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
26445426 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
26445474 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
26445522 AATGTGAA
1 AATGTGAA
26445530 TGTTGTAACA
Statistics
Matches: 141, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 44 0.31
48 97 0.69
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:26445440 original size:95 final size:96
Alignment explanation
Indices: 26445331--26445529 Score: 355
Period size: 95 Copynumber: 2.1 Consensus size: 96
26445321 CGATGTGATG
26445331 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
26445396 TAATGTGTATATGT-GTAAAGCCGAAGGGCT
66 TAATGTGTATATGTGGTAAAGCCGAAGGGCT
*
26445426 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
* * *
26445491 TGATGTGTATGTGTGGTAAAGCCGAATGGCT
66 TAATGTGTATATGTGGTAAAGCCGAAGGGCT
26445522 AATGTGAA
1 AATGTGAA
26445530 TGTTGTAACA
Statistics
Matches: 99, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
95 76 0.77
96 23 0.23
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (96 bp):
AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
TAATGTGTATATGTGGTAAAGCCGAAGGGCT
Found at i:26445623 original size:37 final size:37
Alignment explanation
Indices: 26445569--26445658 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
26445559 AACTTGGAAA
*
26445569 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
26445607 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
26445644 TATGTCC-GGTAAGAC
1 TATGTCCGGGTAAGAC
26445659 TTCGTAATAA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
36 8 0.16
37 39 0.76
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:26447762 original size:79 final size:80
Alignment explanation
Indices: 26447679--26447861 Score: 325
Period size: 79 Copynumber: 2.3 Consensus size: 80
26447669 CTTGTGGTTA
26447679 TATCC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
26447743 TTCGTGCTAGTGATG
66 TTCGTGCTAGTGATG
*
26447758 TATCCGGGCTAAATT-CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
26447822 TTCGTGCTAGTGATG
66 TTCGTGCTAGTGATG
* *
26447837 TATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGGCTAAGTTCCGAAGAGCA
26447862 ATCATGCTGG
Statistics
Matches: 98, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
79 81 0.83
80 17 0.17
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
TTCGTGCTAGTGATG
Found at i:26447887 original size:42 final size:40
Alignment explanation
Indices: 26447562--26447861 Score: 317
Period size: 40 Copynumber: 7.5 Consensus size: 40
26447552 TGAATGATAC
** *
26447562 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATGTAT
* * * * *
26447602 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATGTAT
* * * * *
26447642 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATGTAT
*
26447682 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
26447721 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
26447761 CCGGGCTAAAT-TCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
26447800 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
26447840 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
26447862 ATCATGCTGG
Statistics
Matches: 228, Mismatches: 23, Indels: 18
0.85 0.09 0.07
Matches are distributed among these distances:
39 60 0.26
40 162 0.71
41 6 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:26451660 original size:49 final size:47
Alignment explanation
Indices: 26451493--26451680 Score: 322
Period size: 47 Copynumber: 4.0 Consensus size: 47
26451483 TGTAGGAGAT
26451493 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
26451540 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* * *
26451587 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGT
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
26451634 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
26451681 CATATGTGTG
Statistics
Matches: 135, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 92 0.68
49 43 0.32
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:26451728 original size:48 final size:48
Alignment explanation
Indices: 26451672--26451871 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
26451662 CGATGTGATG
*
26451672 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
26451720 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
26451768 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
26451816 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
26451864 AATGTGAA
1 AATGTGAA
26451872 TGTTGTAACA
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:26451965 original size:37 final size:37
Alignment explanation
Indices: 26451911--26452001 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
26451901 AACTTGGAAA
*
26451911 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
26451949 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
26451986 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
26452002 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:26456015 original size:58 final size:58
Alignment explanation
Indices: 26455920--26456034 Score: 158
Period size: 58 Copynumber: 2.0 Consensus size: 58
26455910 CCCAATCCCA
* * *
26455920 AAAGGTAGAATTCGGGTACCGTTACATGTTCAATACCCAATAATGAATGAATCGTCCT
1 AAAGGTAGAATTCGGATACCGTTACATGTCCAATACCCAACAATGAATGAATCGTCCT
* ** * *
26455978 AAAGGTAGAATTCGGATACCGTTGCATGTCCGGTACCCAACAATGGATGAATTGTCC
1 AAAGGTAGAATTCGGATACCGTTACATGTCCAATACCCAACAATGAATGAATCGTCC
26456035 CTGTCCCTCC
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
58 49 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (58 bp):
AAAGGTAGAATTCGGATACCGTTACATGTCCAATACCCAACAATGAATGAATCGTCCT
Found at i:26467477 original size:58 final size:59
Alignment explanation
Indices: 26467386--26467505 Score: 161
Period size: 58 Copynumber: 2.1 Consensus size: 59
26467376 CCCTCCCTAA
* * * *
26467386 TCCCAAAAGGTAGAATTCGGATACTATTACATGTTCAGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAAATCAGATACCATTACATGTTCAGTACCCAACAATGAATGAATCG
* * * *
26467445 TCCC-AAAGGTAGAAATCAGATACCGTTGCATGTTCGGTACCCACCAATGAATGAATCG
1 TCCCAAAAGGTAGAAATCAGATACCATTACATGTTCAGTACCCAACAATGAATGAATCG
26467503 TCC
1 TCC
26467506 TTGTCCCTCC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
58 49 0.92
59 4 0.08
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTAGAAATCAGATACCATTACATGTTCAGTACCCAACAATGAATGAATCG
Found at i:26474220 original size:42 final size:42
Alignment explanation
Indices: 26474173--26475114 Score: 402
Period size: 43 Copynumber: 21.9 Consensus size: 42
26474163 GATGGTTCGA
*
26474173 GAGCCTCGAGCAGCA-CTGGCACCTTGGTGCTTGGATGTGCGG
1 GAGCCTCGAGCACCATC-GGCACCTTGGTGCTTGGATGTGCGG
* * * **
26474215 GAGCCTCGAGCAGCATCGGCACCTTAGTACTCAGATGTGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGG
* * * * ** *
26474257 CAGCCTTGAGCAGCATTGGCACCTTGGTGCCTCAGATGTGTGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTG-CTTGGATGTGCGG
* * * * *
26474300 GAACCTCGAGTAGCATCGGTACCTTGGTGCCTTGGATATGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTG-CTTGGATGTGCGG
* * * ** *
26474343 GAGCCTC-AGACACCATCGACAAACTAGGCCCTTGGTTGTGCGG
1 GAGCCTCGAG-CACCATCGGC-ACCTTGGTGCTTGGATGTGCGG
* *
26474386 GAGCCTCG-GCACCA-CTGGCACCTTGGTACTTGGATGTGCTG
1 GAGCCTCGAGCACCATC-GGCACCTTGGTGCTTGGATGTGCGG
* * *
26474427 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTAGATGTGCGA
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGG
* * *
26474469 GAGCCACG-GCACCATTGGCAACCTAGGCT-CTTGG-TCGTGCGG
1 GAGCCTCGAGCACCATCGGC-ACCTTGG-TGCTTGGAT-GTGCGG
* ** * *
26474511 GAGCCTCG-GACACCATCGGCAACCTAGGCCCTTTGTTGTGCGG
1 GAGCCTCGAG-CACCATCGGC-ACCTTGGTGCTTGGATGTGCGG
* ** * ** *
26474554 GAGCCTCGGGCACCATCGATAACTTAGGCCCTT-GATCATGCGG
1 GAGCCTCGAGCACCATCGGCACCTT-GGTGCTTGGAT-GTGCGG
* * * * * *
26474597 GAGCCTCGGGCACCATCAGCAACCTAGGTCCTTGGTTGTGCGA
1 GAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGATGTGCGG
* *
26474640 GAGCTTCGA-CACCATCGGCACCTTGGTTCTTGGATGTGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGG
* * ** *
26474681 GAGCCTC-AGGCACGATCGGCAACTTAGGCCCATGG-TCGTGCGG
1 GAGCCTCGA-GCACCATCGGCACCTT-GGTGCTTGGAT-GTGCGG
* * * ** *
26474724 GAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGG-TCTTGCGG
1 GAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGG
* * * ** * *
26474767 GAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGG-TCGTGTGA
1 GAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGG
* **
26474810 GAGCCTCG-GCACCATCGGCACCTT-ATGGCTTACATGTGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGT-GCTTGGATGTGCGG
* * ** **
26474851 GAGCCTTG-GACACCATCAGCAACCGAGGCCCTTGG-TCGTGCGG
1 GAGCCTCGAG-CACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGG
* ** *
26474894 GA-CCTTC-AGGCACCATCGGCAACCTAGGT-CATTGG-TCAAGCGA
1 GAGCC-TCGA-GCACCATCGGC-ACCTTGGTGC-TTGGAT-GTGCGG
* * *
26474937 GAGCCTCAAGCACTC-TCGGGCA-CTATCGGTAGCCTAGGCCCTTGATCATGCGG
1 GAGCCTCGAGCAC-CATC-GGCACCT-T-GGT-G-CT------TGGAT-GTGCGG
* * * *
26474990 GAGCCTCAAGAACCATCGGCACCTTAGTGCCTGGATGTGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGG
* * * * * ** *
26475032 GATCCTTGGGCACCATCGGTAACCTAGGCCCTTGGTTGTGCGG
1 GAGCCTCGAGCACCATCGG-CACCTTGGTGCTTGGATGTGCGG
* * *
26475075 GAACCTCGGGCACCATCGGTACCTTGGTGCCTTGGATGTG
1 GAGCCTCGAGCACCATCGGCACCTTGGTG-CTTGGATGTG
26475115 AGGATTAAAG
Statistics
Matches: 701, Mismatches: 144, Indels: 109
0.73 0.15 0.11
Matches are distributed among these distances:
40 1 0.00
41 79 0.11
42 205 0.29
43 354 0.50
44 26 0.04
46 1 0.00
47 1 0.00
49 1 0.00
50 1 0.00
51 2 0.00
52 8 0.01
53 22 0.03
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.21
Consensus pattern (42 bp):
GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGG
Found at i:26474315 original size:43 final size:43
Alignment explanation
Indices: 26474173--26474473 Score: 224
Period size: 42 Copynumber: 7.1 Consensus size: 43
26474163 GATGGTTCGA
**
26474173 GAGCCTCGAGCAGCA-CTGGCACCTTGGTG-CTTGGATGTGCGG
1 GAGCCTCGAGCAGCATC-GGCACCTTGGTGCCTCAGATGTGCGG
* *
26474215 GAGCCTCGAGCAGCATCGGCACCTTAGT-ACTCAGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCAGATGTGCGG
* * * *
26474257 CAGCCTTGAGCAGCATTGGCACCTTGGTGCCTCAGATGTGTGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCAGATGTGCGG
* * * ** *
26474300 GAACCTCGAGTAGCATCGGTACCTTGGTGCCTTGGATATGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCAGATGTGCGG
* * * * * ** *
26474343 GAGCCTC-AGACACCATCGACAAACTAGG-CCCTTGGTTGTGCGG
1 GAGCCTCGAG-CAGCATCGGC-ACCTTGGTGCCTCAGATGTGCGG
* * ** *
26474386 GAGCCTCG-GCACCA-CTGGCACCTTGGT-ACTTGGATGTGCTG
1 GAGCCTCGAGCAGCATC-GGCACCTTGGTGCCTCAGATGTGCGG
* * * *
26474427 GAGCCTCGGGCACCATCGGCACCTTGGTG-CTTAGATGTGCGA
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCAGATGTGCGG
26474469 GAGCC
1 GAGCC
26474474 ACGGCACCAT
Statistics
Matches: 210, Mismatches: 38, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
41 25 0.12
42 101 0.48
43 79 0.38
44 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.22
Consensus pattern (43 bp):
GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCAGATGTGCGG
Found at i:26474455 original size:127 final size:128
Alignment explanation
Indices: 26474313--26475114 Score: 568
Period size: 127 Copynumber: 6.2 Consensus size: 128
26474303 CCTCGAGTAG
* * * * * *
26474313 CATCGGTACCTTGGTGCCTTGGATATGCGGGAGCCTCAGACACCATCGACAAACTAGGCCCTTGG
1 CATCGGCACCTTGGTGCCTTAGATGTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGG
* ** *
26474378 TTGTGCGGGAGCCTCGGCACCA-CTGGC-ACCTTGGTACTTGGATGTGCTGGAGCCTCGGGCAC
66 TTGTGCGGGAGCCTCGGCACCATC-GGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCAC
* * * * *
26474440 CATCGGCACCTTGGTG-CTTAGATGTGCGAGAGCCAC-GGCACCATTGGCAACCTAGGCTCTTGG
1 CATCGGCACCTTGGTGCCTTAGATGTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGG
* * *
26474503 TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTTGTTGTGCGGGAGCCTCGGGCAC
66 TTGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCAC
** * * * *
26474567 CATCGATAACTTAGG-CCCTT-GATCATGCGGGAGCCTCGGGCACCATC-AGCAACCTAGGTCCT
1 CATCGGCACCTT-GGTGCCTTAGAT-GTGCGGGAGCCTCGGGCACCATCGA-CAACCTAGGCCCT
* * * * ** *
26474629 TGGTTGTGCGAGAGCTTCGACACCATCGGC-ACCTTGGTTCTTGGATGTGCGGGAGCCTCAGGCA
63 TGGTTGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCA
26474693 C
128 C
* * * * * * *
26474694 GATCGGCAACTTAG-GCC-CATGGTCGTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTT
1 CATCGGCACCTTGGTGCCTTA-GAT-GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTT
* * *
26474757 GGTCT-TGCGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGG-TCGTGTGAGAGCCTC-GG
64 GGT-TGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGG
26474819 CAC
126 CAC
* * * * * *
26474822 CATCGGCACCTT-ATGGCTTACATGTGCGGGAGCCTTGGACACCATC-AGCAACCGAGGCCCTTG
1 CATCGGCACCTTGGTGCCTTAGATGTGCGGGAGCCTCGGGCACCATCGA-CAACCTAGGCCCTTG
* * * ** * **
26474885 GTCGTGCGGGA-CCTTCAGGCACCATCGGCAACCTAGGTCATTGG-TCAAGCGAGAGCCTCAAGC
65 GTTGTGCGGGAGCC-TC-GGCACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGC
26474948 AC
127 AC
* * ** * *
26474950 TC-TCGGGCA-CTATCGGTAGCCTAGGCCCTTGATCATGCGGGAGCCTCAAGAACCATCGGC-AC
1 -CATC-GGCACCT-T-GGT-GCCT------TAGAT-GTGCGGGAGCCTCGGGCACCATCGACAAC
* * * * *
26475012 CTTAGTG-CC-TGGATGTGCGGGATCCTTGGGCACCATCGGTAACCTAGGCCCTTGGTTGTGCGG
54 C-TAG-GCCCTTGGTTGTGCGGGAGCC-TCGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGG
*
26475075 GAACCTCGGGCAC
116 GAGCCTCGGGCAC
* *
26475088 CATCGGTACCTTGGTGCCTTGGATGTG
1 CATCGGCACCTTGGTGCCTTAGATGTG
26475115 AGGATTAAAG
Statistics
Matches: 530, Mismatches: 104, Indels: 81
0.74 0.15 0.11
Matches are distributed among these distances:
125 38 0.07
126 29 0.05
127 228 0.43
128 65 0.12
129 68 0.13
131 1 0.00
132 3 0.01
135 4 0.01
136 3 0.01
137 5 0.01
138 58 0.11
139 27 0.05
140 1 0.00
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (128 bp):
CATCGGCACCTTGGTGCCTTAGATGTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGG
TTGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCAC
Found at i:26474532 original size:43 final size:43
Alignment explanation
Indices: 26474338--26475093 Score: 580
Period size: 43 Copynumber: 17.6 Consensus size: 43
26474328 GCCTTGGATA
* * * * *
26474338 TGCGGGAGCCTCAGACACCATCGACAAACTAGGCCCTTGGTTG
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* **
26474381 TGCGGGAGCCTC-GGCACCA-CTGGC-ACCTTGGTACTTGGAT-G
1 TGCGGGAGCCTCGGGCACCATC-GGCAACCTAGGCCCTTGG-TCG
* * ** *
26474422 TGCTGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTAGAT-G
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCG
* * * *
26474464 TGCGAGAGCCAC-GGCACCATTGGCAACCTAGGCTCTTGGTCG
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * *
26474506 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTTGTTG
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
** * * *
26474549 TGCGGGAGCCTCGGGCACCATCGATAACTTAGGCCCTTGATCA
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * *
26474592 TGCGGGAGCCTCGGGCACCATCAGCAACCTAGGTCCTTGGTTG
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * * * **
26474635 TGCGAGAGCTTC-GACACCATCGGC-ACCTTGGTTCTTGGAT-G
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCG
* * * *
26474676 TGCGGGAGCCTCAGGCACGATCGGCAACTTAGGCCCATGGTCG
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* *
26474719 TGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTCT
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
*
26474762 TGCGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCG
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * **
26474805 TGTGAGAGCCTC-GGCACCATCGGC-ACCTTATGG--CTTACAT-G
1 TGCGGGAGCCTCGGGCACCATCGGCAACC-TA-GGCCCTT-GGTCG
* * * *
26474846 TGCGGGAGCCTTGGACACCATCAGCAACCGAGGCCCTTGGTCG
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * * *
26474889 TGCGGGA-CCTTCAGGCACCATCGGCAACCTAGGTCATTGGTCA
1 TGCGGGAGCC-TCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * * * * *
26474932 AGCGAGAGCCTCAAGCACTCTCGGGCACTATCGGTAGCCTAGGCCCTTGATCA
1 TGCG-G-G-----AG--C-CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
** *
26474985 TGCGGGAGCCTCAAGAACCATCGGC-ACCTTAGTG-CC-TGGAT-G
1 TGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCG
* * * *
26475027 TGCGGGATCCTTGGGCACCATCGGTAACCTAGGCCCTTGGTTG
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
*
26475070 TGCGGGAACCTCGGGCACCATCGG
1 TGCGGGAGCCTCGGGCACCATCGG
26475094 TACCTTGGTG
Statistics
Matches: 564, Mismatches: 110, Indels: 78
0.75 0.15 0.10
Matches are distributed among these distances:
41 78 0.14
42 140 0.25
43 306 0.54
44 3 0.01
45 1 0.00
46 2 0.00
50 1 0.00
51 1 0.00
52 1 0.00
53 30 0.05
54 1 0.00
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (43 bp):
TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
Found at i:26474701 original size:170 final size:170
Alignment explanation
Indices: 26474313--26475093 Score: 697
Period size: 170 Copynumber: 4.5 Consensus size: 170
26474303 CCTCGAGTAG
* * * * * *
26474313 CATCGGTACCTTGGTGCCTTGGATATGCGGGAGCCTCAGACACCATCGACAAACTAGGCCCTTGG
1 CATCGGCACCTTGGT-TCTTGGATGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGG
* ** * *
26474378 TTGTGCGGGAGCCTC-GGCACCA-CTGGC-ACCTTGGTACTTGGAT-GTGCTGGAGCCTCGGGCA
65 TTGTGCGGGAGCCTCGGGCACCATC-GGCAACCTAGGCCCTT-GATCATGCGGGAGCCTCGGGCA
* ** * * *
26474439 CCATCGGC-ACCTTGGTGCTTAGAT-GTGCGAGAGCCACGGCAC
128 CCATCGGCAACCTAGGCCCTT-GGTCGTGCGAGAGCCTCGACAC
* * *
26474481 CATTGGCAACCTAGGCTCTTGG-TCGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTT
1 CATCGGC-ACCTTGGTTCTTGGAT-GTGCGGGAGCCTCAGG-CACCATCGGCAACCTAGGCCCTT
* ** *
26474544 TGTTGTGCGGGAGCCTCGGGCACCATCGATAACTTAGGCCCTTGATCATGCGGGAGCCTCGGGCA
63 GGTTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCATGCGGGAGCCTCGGGCA
* * * *
26474609 CCATCAGCAACCTAGGTCCTTGGTTGTGCGAGAGCTTCGACAC
128 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGACAC
* * *
26474652 CATCGGCACCTTGGTTCTTGGATGTGCGGGAGCCTCAGGCACGATCGGCAACTTAGGCCCATGGT
1 CATCGGCACCTTGGTTCTTGGATGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGT
* * * *
26474717 CGTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCA
66 TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCATGCGGGAGCCTCGGGCACCA
* * *
26474782 TTGGCAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGCAC
131 TCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGACAC
** * * *
26474822 CATCGGCACCTTATGG--CTTACATGTGCGGGAGCCT-TGGACACCATCAGCAACCGAGGCCCTT
1 CATCGGCACC-T-TGGTTCTTGGATGTGCGGGAGCCTCAGG-CACCATCGGCAACCTAGGCCCTT
* * * * * *
26474884 GGTCGTGCGGGA-CCTTCAGGCACCATCGGCAACCTAGGTCATTGGTCAAGCGAGAGCCTCAAGC
63 GGTTGTGCGGGAGCC-TCGGGCACCATCGGCAACCTAGGCCCTTGATCATGCG-G-G-----AG-
* * * * * *
26474948 ACTCTCGGGCACTATCGGTAGCCTAGGCCCTTGATCATGCGGGAGCCTCAAGA-AC
119 -C-CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC--GACAC
* * * * ** *
26475003 CATCGGCACCTTAGTGCCTGGATGTGCGGGATCCTTGGGCACCATCGGTAACCTAGGCCCTTGGT
1 CATCGGCACCTTGGTTCTTGGATGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGT
*
26475068 TGTGCGGGAACCTCGGGCACCATCGG
66 TGTGCGGGAGCCTCGGGCACCATCGG
26475094 TACCTTGGTG
Statistics
Matches: 502, Mismatches: 80, Indels: 49
0.80 0.13 0.08
Matches are distributed among these distances:
167 2 0.00
168 59 0.12
169 21 0.04
170 260 0.52
171 36 0.07
172 4 0.01
177 2 0.00
179 3 0.01
180 39 0.08
181 71 0.14
182 5 0.01
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (170 bp):
CATCGGCACCTTGGTTCTTGGATGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGT
TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCATGCGGGAGCCTCGGGCACCA
TCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGACAC
Found at i:26474768 original size:213 final size:211
Alignment explanation
Indices: 26474329--26474867 Score: 608
Period size: 213 Copynumber: 2.5 Consensus size: 211
26474319 TACCTTGGTG
* * * * *
26474329 CCTTGGATATGCGGGAGCCTCAGACACCATCGACAAACTAGGCCCTTGGTTGTGCGGGAGCCTCG
1 CCTTGGTTGTGCGGGAGCCTCGGGCACCATCGA-AAACTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * *
26474394 GCACCA-CTGGCACCTTGGTACTTGGATGTGCTGGAGCCTCGGGCACCATCGGCACCTTGGTGCT
65 GCACCATCTAGCACCTAGGTACTTGGATGTGCTGGAGCCTCGGACACCATCGGCACCTTGGTGCT
* * *
26474458 TAGATGTGCGAGAGCCACGGCACCATTGGCAACCTAGGCTCTTGGTCGTGCGGGAGCCTCGGACA
130 TAGATGTGCGAGAGCCACGGCACCATCGGCAACCTAGGCCCATGGTCGTGCGGGAGCCTCGGACA
26474523 CCATCGGCAACCTAGGC
195 CCATCGGCAACCTAGGC
* * * *
26474540 CCTTTGTTGTGCGGGAGCCTCGGGCACCATCGATAACTTAGGCCCTTGATCATGCGGGAGCCTCG
1 CCTTGGTTGTGCGGGAGCCTCGGGCACCATCGAAAAC-TAGGCCCTTGGTCGTGCGGGAGCCTC-
* * *
26474605 GGCACCATC-AGCAACCTAGGTCCTTGGTTGTGC-GAGAGCTTC-GACACCATCGGCACCTTGGT
64 GGCACCATCTAGC-ACCTAGGTACTTGGATGTGCTG-GAGCCTCGGACACCATCGGCACCTTGGT
* * * * * * *
26474667 TCTTGGATGTGCGGGAGCCTCAGGCACGATCGGCAACTTAGGCCCATGGTCGTGCGGGAGCCTTG
127 GCTTAGATGTGCGAGAGCCAC-GGCACCATCGGCAACCTAGGCCCATGGTCGTGCGGGAGCCTCG
*
26474732 GGCACCATCGGCAACCTAGGC
191 GACACCATCGGCAACCTAGGC
* * * * *
26474753 CCTTGGTCT-TGCGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGTGAGAGCCTC
1 CCTTGGT-TGTGCGGGAGCCTCGGGCACCA-TCGAAAACTAGGCCCTTGGTCGTGCGGGAGCCTC
* ** * *
26474817 GGCACCATC-GGCACCTTATGG--CTTACATGTGCGGGAGCCTTGGACACCATC
64 GGCACCATCTAGCACC-TA-GGTACTTGGATGTGCTGGAGCCTCGGACACCATC
26474868 AGCAACCGAG
Statistics
Matches: 275, Mismatches: 41, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
210 3 0.01
211 67 0.24
212 69 0.25
213 131 0.48
214 5 0.02
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.21
Consensus pattern (211 bp):
CCTTGGTTGTGCGGGAGCCTCGGGCACCATCGAAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGG
CACCATCTAGCACCTAGGTACTTGGATGTGCTGGAGCCTCGGACACCATCGGCACCTTGGTGCTT
AGATGTGCGAGAGCCACGGCACCATCGGCAACCTAGGCCCATGGTCGTGCGGGAGCCTCGGACAC
CATCGGCAACCTAGGC
Found at i:26475099 original size:85 final size:86
Alignment explanation
Indices: 26474954--26475114 Score: 216
Period size: 85 Copynumber: 1.9 Consensus size: 86
26474944 AAGCACTCTC
* * *
26474954 GGGCACTATCGGTAGCCTAGGCCCTTGATCATGCGGGAGCCTCAAGAACCATCGGCACCTTAGTG
1 GGGCACCATCGGTAACCTAGGCCCTTGATCATGCGGGAACCTCAAGAACCATCGGCACCTTAGTG
26475019 CC-TGGATGTGCGGGATCCTT
66 CCTTGGATGTGCGGGATCCTT
* ** ** * * *
26475039 GGGCACCATCGGTAACCTAGGCCCTTGGTTGTGCGGGAACCTCGGGCACCATCGGTACCTTGGTG
1 GGGCACCATCGGTAACCTAGGCCCTTGATCATGCGGGAACCTCAAGAACCATCGGCACCTTAGTG
26475104 CCTTGGATGTG
66 CCTTGGATGTG
26475115 AGGATTAAAG
Statistics
Matches: 64, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
85 56 0.88
86 8 0.12
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (86 bp):
GGGCACCATCGGTAACCTAGGCCCTTGATCATGCGGGAACCTCAAGAACCATCGGCACCTTAGTG
CCTTGGATGTGCGGGATCCTT
Found at i:26483467 original size:40 final size:40
Alignment explanation
Indices: 26483412--26483621 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
26483402 AACATTGGAA
26483412 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26483452 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26483492 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
26483532 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
26483571 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
26483612 CTATATCCGG
1 ATATATCCGG
26483622 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:26487229 original size:46 final size:46
Alignment explanation
Indices: 26487177--26487349 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
26487167 TGGTTGAGCA
*
26487177 TCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
26487223 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
26487268 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26487316 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26487350 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.56
47 27 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26487333 original size:93 final size:93
Alignment explanation
Indices: 26487174--26487344 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
26487164 GGATGGTTGA
* * ** *
26487174 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
26487239 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
26487267 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCAAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
26487332 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26487345 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:26498277 original size:25 final size:26
Alignment explanation
Indices: 26498241--26498292 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
26498231 ATGCTACGAG
* *
26498241 TCATCCCGGTCCC-TCCCTTTTTGAA
1 TCATCCCAGTCCCTTCCCTTTTGGAA
26498266 TCATCCCAGTCCCTTCCCTTTTGGAA
1 TCATCCCAGTCCCTTCCCTTTTGGAA
26498292 T
1 T
26498293 AAGAGCCTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.13, C:0.38, G:0.12, T:0.37
Consensus pattern (26 bp):
TCATCCCAGTCCCTTCCCTTTTGGAA
Found at i:26498509 original size:42 final size:42
Alignment explanation
Indices: 26498448--26498708 Score: 258
Period size: 42 Copynumber: 6.1 Consensus size: 42
26498438 GTGGTACGAC
* * **
26498448 AGCCTTGAGCAGCACCAGCACCTTGGTGCTCAGATGTGCGGG
1 AGCCTCGAGCAGCATCAGCACCTTGGTGCTTGGATGTGCGGG
* *
26498490 AGCCTCGAGCAGCATCAGCACCTTGCTGCTTAGATGTG-GAGG
1 AGCCTCGAGCAGCATCAGCACCTTGGTGCTTGGATGTGCG-GG
* * * *
26498532 AGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGAATGTACGGG
1 AGCCTCGAGCAGCATCAGCACCTTGGTG-CTTGGATGTGCGGG
*
26498575 AGCCTCGAGCAGCATCAGCACCTTGGGGCTTTGGATGTGCGGG
1 AGCCTCGAGCAGCATCAGCACCTTGGTGC-TTGGATGTGCGGG
* * * * ** *
26498618 AGCCTCG-GACACCATCGGCAAACTAGGCCCTTGGTTGTGCGGG
1 AGCCTCGAG-CAGCATCAGC-ACCTTGGTGCTTGGATGTGCGGG
* * *
26498661 AGCCTCGGGCA-CTATCGGCACCTTGGTACTTGGATGTGCGGG
1 AGCCTCGAGCAGC-ATCAGCACCTTGGTGCTTGGATGTGCGGG
26498703 AGCCTC
1 AGCCTC
26498709 CGACACCATC
Statistics
Matches: 184, Mismatches: 27, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.01
42 89 0.48
43 86 0.47
44 8 0.04
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.20
Consensus pattern (42 bp):
AGCCTCGAGCAGCATCAGCACCTTGGTGCTTGGATGTGCGGG
Found at i:26498657 original size:43 final size:43
Alignment explanation
Indices: 26498611--26498849 Score: 266
Period size: 43 Copynumber: 5.6 Consensus size: 43
26498601 GGCTTTGGAT
* * *
26498611 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
26498654 GTGCGGGAGCCTCGGGCACTATCGGC-ACCTTGGTACTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
26498696 GTGCGGGAGCCTCCGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
26498739 GTGCGAGAGCCTCGGGCACCATCAGTACCCTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
26498782 GTACGGAAGCTTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* **
26498825 ATGCGCCAGCCTCGGGCACCATCGG
1 GTGCGGGAGCCTCGGGCACCATCGG
26498850 TACCTTGGTG
Statistics
Matches: 162, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
42 34 0.21
43 128 0.79
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:26498718 original size:85 final size:85
Alignment explanation
Indices: 26498571--26498857 Score: 281
Period size: 86 Copynumber: 3.3 Consensus size: 85
26498561 CTCGAATGTA
* * *
26498571 CGGGAGCCTCGAGCAGCATCAGCACCTTGGGGCTTTGGATGTGCGGGAGCCTCGGACACCATCGG
1 CGGGAGCCTCGGGCA-CATCAGCACCTTGGGACTTTGGATGTGCGGGAGCCTCCGACACCATCGG
*
26498636 CAAACTAGGCCCTTGGTTGTG
65 CAAACTAGGCCCTTGGTCGTG
* *
26498657 CGGGAGCCTCGGGCACTATCGGCACCTTGGTAC-TTGGATGTGCGGGAGCCTCCGACACCATCGG
1 CGGGAGCCTCGGGCAC-ATCAGCACCTTGGGACTTTGGATGTGCGGGAGCCTCCGACACCATCGG
*
26498721 CAACCTAGGCCCTTGGTCGTG
65 CAAACTAGGCCCTTGGTCGTG
* * * ** * * * * * * *
26498742 CGAGAGCCTCGGGCACCATCAGTACCCTAAGCCCTTGG-TCGTACGGAAGCTTCGGGCACCATCG
1 CGGGAGCCTCGGGCA-CATCAGCACCTTGGGACTTTGGAT-GTGCGGGAGCCTCCGACACCATCG
* * *
26498806 GTAACCTAGGCCCTTGGTCATG
64 GCAAACTAGGCCCTTGGTCGTG
** * *
26498828 CGCCAGCCTCGGGCACCATCGGTACCTTGG
1 CGGGAGCCTCGGGCA-CATCAGCACCTTGG
26498858 TGCCTCGGAT
Statistics
Matches: 169, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
85 74 0.44
86 95 0.56
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.20
Consensus pattern (85 bp):
CGGGAGCCTCGGGCACATCAGCACCTTGGGACTTTGGATGTGCGGGAGCCTCCGACACCATCGGC
AAACTAGGCCCTTGGTCGTG
Found at i:26498720 original size:42 final size:42
Alignment explanation
Indices: 26498465--26498761 Score: 260
Period size: 43 Copynumber: 7.0 Consensus size: 42
26498455 AGCAGCACCA
** * *
26498465 GCACCTTGGTGCTCAGATGTGCGGGAGCCTCGAGCAGCATCA
1 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCG
* * *
26498507 GCACCTTGCTGCTTAGATGTG-GAGGAGCCTCGAGCAGCATCG
1 GCACCTTGGTGCTTGGATGTGCG-GGAGCCTCGAGCACCATCG
* * * * *
26498549 GCACCTTGGTGCCTCGAATGTACGGGAGCCTCGAGCAGCATCA
1 GCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGAGCACCATCG
*
26498592 GCACCTTGGGGCTTTGGATGTGCGGGAGCCTCG-GACACCATCG
1 GCACCTTGGTGC-TTGGATGTGCGGGAGCCTCGAG-CACCATCG
* * ** * * *
26498635 GCAAACTAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACTATCG
1 GC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCG
*
26498678 GCACCTTGGTACTTGGATGTGCGGGAGCCTCCGA-CACCATCG
1 GCACCTTGGTGCTTGGATGTGCGGGAGCCT-CGAGCACCATCG
* ** * *
26498720 GCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATC
1 GC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATC
26498762 AGTACCCTAA
Statistics
Matches: 211, Mismatches: 33, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.00
42 84 0.40
43 118 0.56
44 8 0.04
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.20
Consensus pattern (42 bp):
GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCG
Found at i:26501099 original size:2 final size:2
Alignment explanation
Indices: 26501092--26501120 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
26501082 TGAAAGTTGA
26501092 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26501121 TTGAAAGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:26502186 original size:37 final size:37
Alignment explanation
Indices: 26502091--26502191 Score: 148
Period size: 37 Copynumber: 2.7 Consensus size: 37
26502081 GGCTTAAAGA
** * *
26502091 CCCGCAGGCTTCGTGCTGGTAAAATATCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGATAAAT
26502128 CCCGCAGGCTTCGTGCTGGTATTATATCCGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGATAAAT
* *
26502165 CCCGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
26502192 TCGGCCTTCG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.29
Consensus pattern (37 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGATAAAT
Found at i:26502243 original size:43 final size:42
Alignment explanation
Indices: 26502189--26502290 Score: 170
Period size: 42 Copynumber: 2.4 Consensus size: 42
26502179 GCTGGTATTA
26502189 TATTC-GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTT-GTGCCGGTGATGTG
* *
26502231 TATTCGGGCCTTCATGCCTAGCAGGCTTGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTGTGCCGGTGATGTG
26502273 TATTCGGGCCTTCGTGCC
1 TATTCGGGCCTTCGTGCC
26502291 GGTGATGTGT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
42 35 0.62
43 21 0.38
ACGTcount: A:0.10, C:0.25, G:0.32, T:0.32
Consensus pattern (42 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTGTGCCGGTGATGTG
Found at i:26502297 original size:27 final size:27
Alignment explanation
Indices: 26502259--26502317 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
26502249 TAGCAGGCTT
*
26502259 GTGCTGGTGATGTGTATTCGGGCCTTC
1 GTGCCGGTGATGTGTATTCGGGCCTTC
26502286 GTGCCGGTGATGTGTATTCGGGCCTTC
1 GTGCCGGTGATGTGTATTCGGGCCTTC
26502313 GTGCC
1 GTGCC
26502318 TAGCAGGCGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.07, C:0.22, G:0.37, T:0.34
Consensus pattern (27 bp):
GTGCCGGTGATGTGTATTCGGGCCTTC
Found at i:26518391 original size:66 final size:68
Alignment explanation
Indices: 26518315--26518501 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
26518305 TAGTACCACT
*
26518315 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
26518377 CACG
65 CACG
26518381 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
26518446 ATCACG
63 ATCACG
26518452 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
26518502 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:26518426 original size:71 final size:71
Alignment explanation
Indices: 26518338--26518501 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
26518328 CGATTTGTCT
26518338 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26518403 CTTTCA
66 CTTTCA
26518409 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26518474 CTTTCA
66 CTTTCA
26518480 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
26518502 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:26518539 original size:71 final size:70
Alignment explanation
Indices: 26518338--26518535 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
26518328 CGATTTGTCT
* * *
26518338 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
26518403 CTTTCA
65 CTTTCA
* * *
26518409 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
26518474 CTTTCA
65 CTTTCA
* *
26518480 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
26518536 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:26519899 original size:43 final size:43
Alignment explanation
Indices: 26519836--26519997 Score: 243
Period size: 43 Copynumber: 3.8 Consensus size: 43
26519826 CGACACCTTG
* *
26519836 GGCCCTTGGTCGTGCCAGAGCATCGGGCACCATCGGCAACCTA
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * *
26519879 GGCCCTTGGTCATGCAAGAGCCTCGTGCACCATCGGCAACCTA
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * * *
26519922 GGCCTTTGGTCGTACGAGAGCCTCGGGAACCATCGGTAACCTA
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
26519965 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
26519998 TGACACCTTG
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 105 1.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (43 bp):
GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
Found at i:26520492 original size:11 final size:11
Alignment explanation
Indices: 26520476--26520518 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
26520466 ATGTGCCTGT
26520476 ATATTAATGTA
1 ATATTAATGTA
26520487 ATATTAATGTA
1 ATATTAATGTA
* *
26520498 ATAATAATAT-
1 ATATTAATGTA
26520508 ATATTAATGTA
1 ATATTAATGTA
26520519 TTAATGTAGC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 8 0.30
11 19 0.70
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (11 bp):
ATATTAATGTA
Found at i:26522528 original size:16 final size:16
Alignment explanation
Indices: 26522507--26522577 Score: 90
Period size: 16 Copynumber: 4.4 Consensus size: 16
26522497 GTTTGGTTCA
26522507 CTGTAATGGAATA-AGG
1 CTGTAATGGAATAGA-G
*
26522523 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
*
26522539 TTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
* *
26522555 TTATAATGGAATAGAG
1 CTGTAATGGAATAGAG
26522571 CTGTAAT
1 CTGTAAT
26522578 CAGTAATTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
16 47 0.98
17 1 0.02
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:26522757 original size:25 final size:26
Alignment explanation
Indices: 26522724--26522773 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26522714 GTAGATAGAT
*
26522724 GATTATTGTT-ATTAAATTTTAATAA
1 GATTATTGTTCAATAAATTTTAATAA
*
26522749 GATTATTGTTCAATATATTTTAATA
1 GATTATTGTTCAATAAATTTTAATA
26522774 TAAATAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (26 bp):
GATTATTGTTCAATAAATTTTAATAA
Found at i:26522852 original size:12 final size:11
Alignment explanation
Indices: 26522825--26522899 Score: 52
Period size: 12 Copynumber: 6.8 Consensus size: 11
26522815 TTATTAAATA
26522825 AATTTAATAA-
1 AATTTAATAAT
26522835 AA--TAATATAT
1 AATTTAATA-AT
*
26522845 AATTTAATAAC
1 AATTTAATAAT
*
26522856 ATTCTTAAT-AT
1 AAT-TTAATAAT
26522867 AATTATTAATAAT
1 AA-T-TTAATAAT
26522880 -ATTTAATAAT
1 AATTTAATAAT
26522890 AATTTTAATA
1 AA-TTTAATA
26522900 TAAAATTATT
Statistics
Matches: 51, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
8 5 0.10
9 1 0.02
10 12 0.24
11 7 0.14
12 24 0.47
13 2 0.04
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (11 bp):
AATTTAATAAT
Found at i:26522891 original size:13 final size:12
Alignment explanation
Indices: 26522837--26522899 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
26522827 TTTAATAAAA
26522837 TAATATATAA-TT
1 TAATA-ATAATTT
*
26522849 TAATAA-CATTCT
1 TAATAATAATT-T
26522861 TAAT-ATAATTAT
1 TAATAATAATT-T
26522873 TAATAAT-A-TT
1 TAATAATAATTT
26522883 TAATAATAATTT
1 TAATAATAATTT
26522895 TAATA
1 TAATA
26522900 TAAAATTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
10 9 0.21
11 5 0.12
12 26 0.62
13 2 0.05
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (12 bp):
TAATAATAATTT
Found at i:26523296 original size:31 final size:31
Alignment explanation
Indices: 26523261--26523335 Score: 102
Period size: 31 Copynumber: 2.4 Consensus size: 31
26523251 CTCATAGTCC
26523261 GTTATTCAAAAAC-CATAGTCCTTAA-T-TTTAT
1 GTTATTCAAAAACTCATAG---TTAATTCTTTAT
26523292 GTTATTCAAAAACTCATAGTTAATTCTTTAT
1 GTTATTCAAAAACTCATAGTTAATTCTTTAT
26523323 GTTATTCAAAAAC
1 GTTATTCAAAAAC
26523336 ATAAAGAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
29 4 0.10
30 1 0.02
31 31 0.76
32 5 0.12
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (31 bp):
GTTATTCAAAAACTCATAGTTAATTCTTTAT
Found at i:26528233 original size:37 final size:37
Alignment explanation
Indices: 26528174--26528280 Score: 187
Period size: 37 Copynumber: 2.9 Consensus size: 37
26528164 AGCTCAAATG
* *
26528174 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
26528211 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
26528248 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
26528281 AATATATTTC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:26528480 original size:48 final size:48
Alignment explanation
Indices: 26528422--26528794 Score: 665
Period size: 48 Copynumber: 7.7 Consensus size: 48
26528412 ATATACACAC
*
26528422 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
26528470 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
26528518 ATGTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
26528568 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
26528616 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
26528664 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
26528712 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
26528760 ATCTCCTACATATTTCACACTAGCCATTCGGCTTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTT
26528795 CTCATACATA
Statistics
Matches: 313, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 268 0.86
50 45 0.14
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:26528806 original size:33 final size:33
Alignment explanation
Indices: 26528761--26528827 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
26528751 CATATACATA
*
26528761 TCTCCTACATATTTCACACTAGCCATTCGGCTT
1 TCTCATACATATTTCACACTAGCCATTCGGCTT
*
26528794 TCTCATACATATTTCACATTAGCCATTCGGCTT
1 TCTCATACATATTTCACACTAGCCATTCGGCTT
26528827 T
1 T
26528828 ACCACATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.22, C:0.30, G:0.09, T:0.39
Consensus pattern (33 bp):
TCTCATACATATTTCACACTAGCCATTCGGCTT
Found at i:26528849 original size:48 final size:48
Alignment explanation
Indices: 26528794--26529082 Score: 524
Period size: 48 Copynumber: 6.0 Consensus size: 48
26528784 CATTCGGCTT
*
26528794 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
*
26528842 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
26528890 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
26528938 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
*
26528986 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
* * *
26529034 TCTCATACATATTTCACACTAGACATTCGGCTTTACCACACATATATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
26529082 T
1 T
26529083 ATTTATCTTG
Statistics
Matches: 235, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 235 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
Found at i:26528913 original size:177 final size:181
Alignment explanation
Indices: 26528614--26529082 Score: 757
Period size: 177 Copynumber: 2.6 Consensus size: 181
26528604 CCACATATAC
*
26528614 ATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
26528679 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGC
66 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGC
*
26528744 TTTACCACATATACATATCTCCTACATATTTCACACTAGCCATTCGG-C-T
131 TTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCCAT
26528793 -T-TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
26528856 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGC
66 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGC
26528921 TTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
131 TTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG------C-C--AT
26528981 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 --ATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* * * *
26529046 TTCACACTAGACATTCGGCTTTACCACACATATATAT
64 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
26529083 ATTTATCTTG
Statistics
Matches: 269, Mismatches: 6, Indels: 17
0.92 0.02 0.06
Matches are distributed among these distances:
177 172 0.64
178 1 0.00
185 1 0.00
188 1 0.00
191 1 0.00
192 93 0.35
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (181 bp):
ATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGC
TTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCCAT
Found at i:26528960 original size:225 final size:225
Alignment explanation
Indices: 26528569--26529019 Score: 866
Period size: 225 Copynumber: 2.0 Consensus size: 225
26528559 CATATACATA
26528569 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
*
26528634 ACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
66 ACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
26528699 ACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
131 ACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
*
26528764 CCTACATATTTCACACTAGCCATTCGGCTT
196 CATACATATTTCACACTAGCCATTCGGCTT
26528794 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
*
26528859 ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
66 ACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
26528924 ACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
131 ACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
*
26528989 CATACATATTTCACATTAGCCATTCGGCTT
196 CATACATATTTCACACTAGCCATTCGGCTT
26529019 T
1 T
26529020 ACCACATATA
Statistics
Matches: 222, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
225 222 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (225 bp):
TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
ACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
ACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
CATACATATTTCACACTAGCCATTCGGCTT
Found at i:26529016 original size:273 final size:273
Alignment explanation
Indices: 26528529--26529067 Score: 1042
Period size: 273 Copynumber: 2.0 Consensus size: 273
26528519 TGTCATATAT
26528529 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
26528594 TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
66 TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
*
26528659 TACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
131 TACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
* *
26528724 TTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCCTACATATTTCACACTAGCCATTC
196 TTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGACATTC
26528789 GGCTTTCTCATAC
261 GGCTTTCTCATAC
26528802 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
26528867 TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
66 TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
26528932 TACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
131 TACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
*
26528997 TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGACATTC
196 TTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGACATTC
26529062 GGCTTT
261 GGCTTT
26529068 ACCACACATA
Statistics
Matches: 262, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
273 262 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (273 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
TACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
TTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGACATTC
GGCTTTCTCATAC
Found at i:26534796 original size:14 final size:14
Alignment explanation
Indices: 26534777--26534803 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26534767 CTTGCAGGTG
26534777 CTCTACTGCTAGCC
1 CTCTACTGCTAGCC
26534791 CTCTACTGCTAGC
1 CTCTACTGCTAGC
26534804 ACCACTGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.41, G:0.15, T:0.30
Consensus pattern (14 bp):
CTCTACTGCTAGCC
Found at i:26537745 original size:46 final size:46
Alignment explanation
Indices: 26537687--26537805 Score: 141
Period size: 46 Copynumber: 2.6 Consensus size: 46
26537677 GAGGCCGAAG
* * * *
26537687 CATGTCCTAGACATGTCTTCCACTAGCTCTCGTCTCAATG-CCGACA
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAT-AATGTCCGACA
* * **
26537733 CATGTCCCAGACATGTCTTACACTGGCTCTCATATTATGTCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATATAATGTCCGACA
*
26537779 CATGTCCCAGACATGTCTTGCACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
26537806 ACACATATCA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
45 3 0.05
46 59 0.95
ACGTcount: A:0.22, C:0.32, G:0.17, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATATAATGTCCGACA
Found at i:26543475 original size:46 final size:46
Alignment explanation
Indices: 26543425--26543600 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
26543415 TGGTTGAGCA
*
26543425 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
26543471 TCCGAACTCGTTGACTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
26543516 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
26543564 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26543601 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26543534 original size:93 final size:93
Alignment explanation
Indices: 26543422--26543592 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
26543412 GGATGGTTGA
* * *
26543422 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGACT
26543487 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
26543515 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGACT
26543580 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26543593 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGACT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26549676 original size:22 final size:22
Alignment explanation
Indices: 26549645--26549688 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26549635 AATGAATAGG
26549645 AATAAATAGAA-TAAAATATTAA
1 AATAAATAGAATTAAAA-ATTAA
*
26549667 AATAATTAGAATTAAAAATTAA
1 AATAAATAGAATTAAAAATTAA
26549689 GGTTTAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (22 bp):
AATAAATAGAATTAAAAATTAA
Found at i:26551244 original size:9 final size:9
Alignment explanation
Indices: 26551225--26551283 Score: 64
Period size: 9 Copynumber: 5.9 Consensus size: 9
26551215 GCGTGCTAAG
26551225 TAAGTTATAA
1 TAAG-TATAA
26551235 TAAGTATAA
1 TAAGTATAA
26551244 TAATGTGATATGA
1 TAA-GT-ATA--A
26551257 TAAGTTATAA
1 TAAG-TATAA
26551267 TAAGTATAA
1 TAAGTATAA
26551276 TAAGTATA
1 TAAGTATA
26551284 GTGGCTTGGC
Statistics
Matches: 44, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
9 21 0.48
10 11 0.25
11 3 0.07
12 4 0.09
13 5 0.11
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (9 bp):
TAAGTATAA
Found at i:26551812 original size:20 final size:20
Alignment explanation
Indices: 26551784--26551831 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
26551774 GGGTATTTTA
* *
26551784 TGGACTTTTAAATTTTGTTT
1 TGGAATTTTAAATTTAGTTT
* *
26551804 TGGAATTTTTACTTTAGTTT
1 TGGAATTTTAAATTTAGTTT
*
26551824 TGGTATTT
1 TGGAATTT
26551832 GTTTCGTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.19, C:0.04, G:0.17, T:0.60
Consensus pattern (20 bp):
TGGAATTTTAAATTTAGTTT
Found at i:26559367 original size:12 final size:13
Alignment explanation
Indices: 26559338--26559370 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
26559328 GGGGTCACAC
26559338 GGCCGTGTGGCCA
1 GGCCGTGTGGCCA
*
26559351 GGCCGTGT-GCTA
1 GGCCGTGTGGCCA
26559363 GGCCGTGT
1 GGCCGTGT
26559371 AACTCATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.06, C:0.27, G:0.45, T:0.21
Consensus pattern (13 bp):
GGCCGTGTGGCCA
Found at i:26561096 original size:69 final size:68
Alignment explanation
Indices: 26561020--26561282 Score: 291
Period size: 69 Copynumber: 3.8 Consensus size: 68
26561010 TTTGGAAAGT
* ** *
26561020 ACATTAAGCATTTAAAAT-GAACATAAATGAACACAGTTTTAAGACAACAAATCAGCCCTATACA
1 ACATTAAGAATTT-AAATCGAATGTAAATGAACACA-TTTTAAGACAACAAATCAGCCCTTTACA
26561084 ACAAC
64 ACAAC
* *
26561089 ACATTAAGAACTTAAGTCGAATGTAAATGAACACATTTTAAAGA-ATACAAATCAGCCCTTTACA
1 ACATTAAGAATTTAAATCGAATGTAAATGAACACATTTT-AAGACA-ACAAATCAGCCCTTTACA
*
26561153 GCAAC
64 ACAAC
* * * *
26561158 ACATTAAGTATTTAAATCGAATGTAAATTAACACATTTTAAGGACTACAAATCAGCCCTTTACAG
1 ACATTAAGAATTTAAATCGAATGTAAATGAACACATTTTAA-GACAACAAATCAGCCCTTTACAA
* *
26561223 TAGC
65 CAAC
* * *
26561227 ACATTAA-AGATTTAAATCGAATGTAGATTAACACATTTTAAAGACTAC-AATCAGCC
1 ACATTAAGA-ATTTAAATCGAATGTAAATGAACACATTTT-AAGACAACAAATCAGCC
26561283 TTCTATCACA
Statistics
Matches: 171, Mismatches: 16, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
68 18 0.11
69 151 0.88
70 2 0.01
ACGTcount: A:0.45, C:0.18, G:0.11, T:0.26
Consensus pattern (68 bp):
ACATTAAGAATTTAAATCGAATGTAAATGAACACATTTTAAGACAACAAATCAGCCCTTTACAAC
AAC
Found at i:26561268 original size:138 final size:137
Alignment explanation
Indices: 26561020--26561282 Score: 343
Period size: 138 Copynumber: 1.9 Consensus size: 137
26561010 TTTGGAAAGT
26561020 ACATTAAGCATTTAAAATGAACATAAATGAACACAGTTTTAAGACAACAAATCAGCCCTATACAA
1 ACATTAAGCATTTAAAATGAACATAAATGAACACAGTTTTAAGACAACAAATCAGCCCTATACAA
*
26561085 CAACACATTAAGAACTTAAGTCGAATGTAAATGAACACATTTTAAAGAATACAAATCAGCCCTTT
66 CAACACATTAAGAACTTAAATCGAATGTAAATGAACACATTTTAAAGAATAC-AATCAGCCCTTT
26561150 ACAGCAAC
130 ACAGCAAC
* ** * * *
26561158 ACATTAAGTATTT-AAATCGAATGTAAATTAACACA-TTTTAAGGACTACAAATCAGCCCTTTAC
1 ACATTAAGCATTTAAAAT-GAACATAAATGAACACAGTTTTAA-GACAACAAATCAGCCCTATAC
** * * * * *
26561221 AGTAGCACATTAA-AGATTTAAATCGAATGTAGATTAACACATTTTAAAGACTACAATCAGCC
64 AACAACACATTAAGA-ACTTAAATCGAATGTAAATGAACACATTTTAAAGAATACAATCAGCC
26561283 TTCTATCACA
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
137 19 0.18
138 89 0.82
ACGTcount: A:0.45, C:0.18, G:0.11, T:0.26
Consensus pattern (137 bp):
ACATTAAGCATTTAAAATGAACATAAATGAACACAGTTTTAAGACAACAAATCAGCCCTATACAA
CAACACATTAAGAACTTAAATCGAATGTAAATGAACACATTTTAAAGAATACAATCAGCCCTTTA
CAGCAAC
Found at i:26564996 original size:49 final size:49
Alignment explanation
Indices: 26564919--26565046 Score: 150
Period size: 49 Copynumber: 2.6 Consensus size: 49
26564909 TAAGATGCCA
* * *
26564919 ATGCCACGTCCTAGACATGGTCTTACACTGGCTTTCATATATCGAG-GCAG
1 ATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATATATCG-GTGCAG
* * * **
26564969 ATGCCATGTTCCAGACAGGTCTTACACTGGCTCTCATCTATTGGTGTTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGGTGCAG
*
26565018 ATGCCATGTCCCAAACAGGTCTTACACTG
1 ATGCCATGTCCCAGACAGGTCTTACACTG
26565047 ACATACAACA
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
48 1 0.01
49 52 0.78
50 14 0.21
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGGTGCAG
Found at i:26565174 original size:46 final size:45
Alignment explanation
Indices: 26565107--26565280 Score: 161
Period size: 46 Copynumber: 3.8 Consensus size: 45
26565097 ATATCGTGAG
* *
26565107 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTAGTCTTAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTAATCTT-AT
* * * * *
26565153 GCCGATACATGTCCCAAACATGTCTTACATTGGCT-TAAATATCTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCT--A-ATCT-TAT
* * * * ** *
26565201 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAGTGT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTAATCTTAT
26565246 GGCCGATGCATGTCCCAAACATGTCTTACACTAGC
1 -GCCGATGCATGTCCCAAACATGTCTTACACTAGC
26565281 ACATATATCA
Statistics
Matches: 102, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
45 1 0.01
46 64 0.63
47 1 0.01
48 35 0.34
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTAATCTTAT
Found at i:26565202 original size:94 final size:94
Alignment explanation
Indices: 26565104--26565275 Score: 258
Period size: 94 Copynumber: 1.8 Consensus size: 94
26565094 TGTATATCGT
**
26565104 GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-AGTCTTAAT-GCCGATACATGTCC
1 GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCA-TAGT-ATGGCCGATACATGTCC
26565167 CAAACATGTCTTACATTGGCTTAAATATCTC
64 CAAACATGTCTTACATTGGCTTAAATATCTC
* * * *
26565198 GAGGCTGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAGTGTGGCCGATGCATGTCCCA
1 GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAGTATGGCCGATACATGTCCCA
26565263 AACATGTCTTACA
66 AACATGTCTTACA
26565276 CTAGCACATA
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
93 1 0.01
94 68 0.97
95 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (94 bp):
GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAGTATGGCCGATACATGTCCCA
AACATGTCTTACATTGGCTTAAATATCTC
Found at i:26565289 original size:94 final size:94
Alignment explanation
Indices: 26565096--26565289 Score: 241
Period size: 94 Copynumber: 2.1 Consensus size: 94
26565086 AACTAGCTTG
**
26565096 TATATCGTGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTAGTCTTAATGCCGATAC
1 TATATCGTGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTAGTAGTAATGCCGATAC
* * **
26565161 ATGTCCCAAACATGTCTTACATTGGCTTA
66 ATGTCCCAAACATGTCTTACACTAGCACA
* * * *
26565190 AATATC-TCGAGGCTGATGCATGTCCCAGACATGTCTTACACTGGCTCTCA-TAGT-GTGGCCGA
1 TATATCGT-GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-AGTAGTAAT-GCCGA
*
26565252 TGCATGTCCCAAACATGTCTTACACTAGCACA
63 TACATGTCCCAAACATGTCTTACACTAGCACA
26565284 TATATC
1 TATATC
26565290 ACTCAATATC
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
93 2 0.02
94 82 0.96
95 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (94 bp):
TATATCGTGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTAGTAGTAATGCCGATAC
ATGTCCCAAACATGTCTTACACTAGCACA
Found at i:26571486 original size:20 final size:21
Alignment explanation
Indices: 26571461--26571500 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26571451 CATTTGAAAC
26571461 AGGGC-ACATGCCCATGTGGA
1 AGGGCAACATGCCCATGTGGA
*
26571481 AGGGCAACATGCCCGTGTGG
1 AGGGCAACATGCCCATGTGG
26571501 CTATTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.25, G:0.38, T:0.15
Consensus pattern (21 bp):
AGGGCAACATGCCCATGTGGA
Found at i:26583799 original size:14 final size:14
Alignment explanation
Indices: 26583766--26583808 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
26583756 ACTTTTTCCA
26583766 CTCTTTTTCTTTT-
1 CTCTTTTTCTTTTG
26583779 CATTCTTTTTCTTTTG
1 C--TCTTTTTCTTTTG
*
26583795 CTCTTTTTCATTTG
1 CTCTTTTTCTTTTG
26583809 ATCTCTCCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 1 0.04
14 12 0.46
15 12 0.46
16 1 0.04
ACGTcount: A:0.05, C:0.21, G:0.05, T:0.70
Consensus pattern (14 bp):
CTCTTTTTCTTTTG
Found at i:26586741 original size:80 final size:80
Alignment explanation
Indices: 26586657--26586805 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
26586647 TATGGTAACC
* * * *
26586657 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
26586721 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
26586737 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
26586802 CCGG
66 CCGG
26586806 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:26586747 original size:40 final size:38
Alignment explanation
Indices: 26586698--26586805 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
26586688 ATCACGATTT
*
26586698 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
26586738 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
26586778 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
26586806 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:26594835 original size:80 final size:80
Alignment explanation
Indices: 26594751--26594899 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
26594741 TATGGTAACC
* * * *
26594751 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
26594815 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
26594831 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
26594896 CCGG
66 CCGG
26594900 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:26594841 original size:40 final size:38
Alignment explanation
Indices: 26594792--26594899 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
26594782 ATCACGATTT
*
26594792 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
26594832 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
26594872 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
26594900 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:26597245 original size:7 final size:7
Alignment explanation
Indices: 26597233--26597276 Score: 72
Period size: 7 Copynumber: 6.3 Consensus size: 7
26597223 TTCTTCTTCT
26597233 TTTTTTA
1 TTTTTTA
26597240 TTTTTTA
1 TTTTTTA
26597247 TTTTTTTA
1 -TTTTTTA
26597255 TTTTTTA
1 TTTTTTA
26597262 TTTTTT-
1 TTTTTTA
26597268 TTTTTTA
1 TTTTTTA
26597275 TT
1 TT
26597277 CATAATTCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
6 6 0.17
7 22 0.63
8 7 0.20
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:26597252 original size:15 final size:15
Alignment explanation
Indices: 26597232--26597273 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
26597222 ATTCTTCTTC
26597232 TTTTTTTATTTTTTA
1 TTTTTTTATTTTTTA
26597247 TTTTTTTATTTTTTA
1 TTTTTTTATTTTTTA
26597262 TTTTTTT-TTTTT
1 TTTTTTTATTTTT
26597274 ATTCATAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 5 0.19
15 22 0.81
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTTATTTTTTA
Found at i:26597261 original size:22 final size:21
Alignment explanation
Indices: 26597233--26597273 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
26597223 TTCTTCTTCT
26597233 TTTTTTATTTTTTATTTTTTTA
1 TTTTTTATTTTTT-TTTTTTTA
26597255 TTTTTTATTTTTTTTTTTT
1 TTTTTTATTTTTTTTTTTT
26597274 ATTCATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (21 bp):
TTTTTTATTTTTTTTTTTTTA
Found at i:26598753 original size:27 final size:27
Alignment explanation
Indices: 26598723--26598785 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
26598713 GCAATTTAAT
26598723 TTGTCCTAAACAAGACATATTTGAAA-G
1 TTGTCCTAAACAAGACATATTT-AAAGG
* *
26598750 TTGT-CTCAAGCTAGACATATTTAAAGG
1 TTGTCCT-AAACAAGACATATTTAAAGG
*
26598777 ATGTCCTAA
1 TTGTCCTAA
26598786 TTTAAACTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
26 5 0.17
27 23 0.77
28 2 0.07
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (27 bp):
TTGTCCTAAACAAGACATATTTAAAGG
Found at i:26601924 original size:50 final size:50
Alignment explanation
Indices: 26601800--26601974 Score: 221
Period size: 50 Copynumber: 3.5 Consensus size: 50
26601790 CTGATATGCA
* * * *
26601800 TAGTAGCCTGCACTTAGTACTACACATGCG--ATCAATAATCCGGTGCACA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACATC-ATCATCTGGTACACG
* *
26601849 TAGTAGCCTGCACTTAGTACTACACATGTGACATCATCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACATCATCATCTGGTACACG
* * *
26601899 TAGTAGCCTGCACTTAGTACTACACATGCGAC-TTAACAGTATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACATCATCA-TCTGGTACACG
*
26601949 TAGTAGCCTACACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
26601975 CGTGTATTCA
Statistics
Matches: 111, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
49 33 0.30
50 75 0.68
51 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACATCATCATCTGGTACACG
Found at i:26603604 original size:14 final size:14
Alignment explanation
Indices: 26603585--26603612 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26603575 ACGCAGACTC
26603585 AACTTGCCTTTTCG
1 AACTTGCCTTTTCG
26603599 AACTTGCCTTTTCG
1 AACTTGCCTTTTCG
26603613 GCCAAACCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.14, T:0.43
Consensus pattern (14 bp):
AACTTGCCTTTTCG
Found at i:26607677 original size:47 final size:47
Alignment explanation
Indices: 26607608--26608225 Score: 946
Period size: 47 Copynumber: 13.3 Consensus size: 47
26607598 CCCTTCGGGA
** * *
26607608 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
26607655 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
26607702 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
26607749 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
26607796 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
26607843 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
26607890 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
26607937 CTTATCACACATATGCACTTTCACATTCATCACATTGGCCA------
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
26607978 --TATCACACATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
26608023 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
26608070 CTTATCACATATATACACTTTCATATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
26608117 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
26608164 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
26608211 CTTATCACACATATA
1 CTTATCACACATATA
26608226 TGTATATCAT
Statistics
Matches: 530, Mismatches: 33, Indels: 16
0.92 0.06 0.03
Matches are distributed among these distances:
39 39 0.07
47 491 0.93
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:26608007 original size:25 final size:25
Alignment explanation
Indices: 26607979--26608056 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
26607969 CATTGGCCAT
26607979 ATCACACATATGCACTTTCACATTC
1 ATCACACATATGCACTTTCACATTC
* * *
26608004 AT--CACAT-TGGC-CATTCGGCCTT-
1 ATCACACATAT-GCACTTTC-ACATTC
26608026 ATCACACATATGCACTTTCACATTC
1 ATCACACATATGCACTTTCACATTC
26608051 ATCACA
1 ATCACA
26608057 TCGGCCATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 7 0.17
23 10 0.25
24 10 0.25
25 13 0.32
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCACTTTCACATTC
Found at i:26608126 original size:22 final size:22
Alignment explanation
Indices: 26608098--26608172 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
26608088 TTTCATATTC
26608098 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
26608120 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
26608144 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
26608167 ATCACA
1 ATCACA
26608173 CATATACACT
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 17 0.45
23 5 0.13
24 5 0.13
25 11 0.29
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:26613891 original size:101 final size:99
Alignment explanation
Indices: 26613679--26613904 Score: 253
Period size: 101 Copynumber: 2.3 Consensus size: 99
26613669 TTGATATGCA
* * *
26613679 TAGTAGCCTGCACTTAGTACTACACATGCGATCAATAATCTGGTACACGTAGTAGCCTGCATTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGATCAATAATCTGGTACACATAGTAGCCTGCAGTTA
* *
26613744 GTACTACACACATGACCTCATCATCTGATACAAG
66 GTACTACACACATGACCTCAACATATGATACAAG
* * * *
26613778 TAGCAGCCTGCACTTAGTACTACACACGTGATCGAAGTCAT-TGAGTACGCATAGTAGCCTGCAG
1 TAGTAGCCTGCACTTAGTACTACACACGCGATC-AA-TAATCTG-GTACACATAGTAGCCTGCAG
* * *
26613842 TTAGTACT--ACACATG-CTACTTAACAGTATGGTACACG
63 TTAGTACTACACACATGAC--CTCAACA-TATGATACAAG
*
26613879 TAGTAGCTTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
26613905 TGTGTATTCA
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
98 1 0.01
99 37 0.35
100 9 0.08
101 60 0.56
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGATCAATAATCTGGTACACATAGTAGCCTGCAGTTA
GTACTACACACATGACCTCAACATATGATACAAG
Found at i:26613897 original size:50 final size:50
Alignment explanation
Indices: 26613679--26613906 Score: 200
Period size: 50 Copynumber: 4.6 Consensus size: 50
26613669 TTGATATGCA
* * *
26613679 TAGTAGCCTGCACTTAGTACTACACATGC-GATCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCTGATCAACAGTATGGTACACG
* * * * *
26613728 TAGTAGCCTGCATTTAGTACTACACA--CATGACCTCATCA-TCTGATACAAG
1 TAGTAGCCTGCACTTAGTACTACACATGC-TGA--TCAACAGTATGGTACACG
* * * * *
26613778 TAGCAGCCTGCACTTAGTACTACACACG-TGATCGA-AGTCATTGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCTGATCAACAGT-A-TG-GTACACG
* *
26613829 TAGTAGCCTGCAGTTAGTACTACACATGCT-ACTTAACAGTATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCTGA-TCAACAGTATGGTACACG
*
26613879 TAGTAGCTTGCACTTAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
26613907 TGTATTCACA
Statistics
Matches: 143, Mismatches: 23, Indels: 25
0.75 0.12 0.13
Matches are distributed among these distances:
47 2 0.01
48 3 0.02
49 27 0.19
50 69 0.48
51 35 0.24
52 4 0.03
53 3 0.02
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCTGATCAACAGTATGGTACACG
Found at i:26615926 original size:39 final size:41
Alignment explanation
Indices: 26615843--26615926 Score: 100
Period size: 39 Copynumber: 2.1 Consensus size: 41
26615833 GTATGCATAA
** * *
26615843 TGTATCTGAGATGGGCTAAGGCCCTAATTTATATTTGAAAC
1 TGTATCTGAGATGGGCTAAGGCCCTAAACTACATCTGAAAC
* *
26615884 TGTATCTGA-TTGGGCTAAGG-CCTAAACTACATCTGAATC
1 TGTATCTGAGATGGGCTAAGGCCCTAAACTACATCTGAAAC
26615923 TGTA
1 TGTA
26615927 ATGGGCTTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 18 0.49
40 10 0.27
41 9 0.24
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (41 bp):
TGTATCTGAGATGGGCTAAGGCCCTAAACTACATCTGAAAC
Found at i:26632416 original size:24 final size:21
Alignment explanation
Indices: 26632367--26632416 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 21
26632357 TGCCAGAGTG
* *
26632367 TTATTATTGGAGTATTCAAAT
1 TTATTATTAGAGTATTAAAAT
26632388 TTATTATTAGAGTAATTGAAAAT
1 TTATTATTAGAGT-ATT-AAAAT
26632411 TATATT
1 T-TATT
26632417 TGTATCCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 12 0.50
22 3 0.12
23 5 0.21
24 4 0.17
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (21 bp):
TTATTATTAGAGTATTAAAAT
Found at i:26637263 original size:26 final size:26
Alignment explanation
Indices: 26637234--26637283 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26637224 TTAATGTACT
*
26637234 AAATATTTTCTTATAAAATTATAACG
1 AAATATTTTCTCATAAAATTATAACG
*
26637260 AAATATTTTCTCATACAATTATAA
1 AAATATTTTCTCATAAAATTATAA
26637284 AATAATTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.42
Consensus pattern (26 bp):
AAATATTTTCTCATAAAATTATAACG
Found at i:26641431 original size:22 final size:22
Alignment explanation
Indices: 26641403--26641446 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
26641393 CAATTTGATT
26641403 CTAATTCTAATAATTCAATAAA
1 CTAATTCTAATAATTCAATAAA
26641425 CTAATTCTAATAATTCAATAAA
1 CTAATTCTAATAATTCAATAAA
26641447 TTTAACCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (22 bp):
CTAATTCTAATAATTCAATAAA
Found at i:26666191 original size:16 final size:16
Alignment explanation
Indices: 26666172--26666213 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
26666162 ACAAAGATGT
26666172 AGAAGAATGAAGA-AAA
1 AGAAGAA-GAAGAGAAA
*
26666188 AGAA-AAGAAAAGAAA
1 AGAAGAAGAAGAGAAA
26666203 AGAAGAAGAAG
1 AGAAGAAGAAG
26666214 CTATAATCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 4 0.18
15 9 0.41
16 9 0.41
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.02
Consensus pattern (16 bp):
AGAAGAAGAAGAGAAA
Found at i:26667361 original size:2 final size:2
Alignment explanation
Indices: 26667354--26667378 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26667344 AAAATTCTAA
26667354 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
26667379 ATAGTATCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26684837 original size:40 final size:40
Alignment explanation
Indices: 26684800--26685023 Score: 235
Period size: 40 Copynumber: 5.6 Consensus size: 40
26684790 GCTACTCGTT
* *
26684800 CAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
26684840 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
26684880 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * *
26684919 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAACTCGCA
* * * * * *
26684959 CGAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
26685000 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
26685024 ACATCATTCG
Statistics
Matches: 160, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 114 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:26684900 original size:79 final size:78
Alignment explanation
Indices: 26684802--26685024 Score: 261
Period size: 79 Copynumber: 2.8 Consensus size: 78
26684792 TACTCGTTCA
* *
26684802 AATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGG-CTTAGCCTGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
26684867 TTAGTAACTCGCACC
64 ATAGTAACTCGCACC
* * *
26684882 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGAT
1 AATGCCTTCGGGCTTAGCCTGGTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGAT
* *
26684946 ATAGTCACTCGCACG
64 ATAGTAACTCGCACC
* * * *
26684961 AATGCCTTCGGATCTTAGTCTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGG-GCTTAGCCTGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
26685025 CATCATTCGA
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.03
79 64 0.52
80 42 0.34
81 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
AATGCCTTCGGGCTTAGCCTGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
AGTAACTCGCACC
Found at i:26685008 original size:119 final size:120
Alignment explanation
Indices: 26684800--26685024 Score: 280
Period size: 119 Copynumber: 1.9 Consensus size: 120
26684790 GCTACTCGTT
*
26684800 CAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCTGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
26684865 ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
66 ATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * **
26684919 CAAATGCCTTC-GGATCTTAGTCC-GGATATAGTCACTCGCACGAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAG-CCTGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* *
26684981 TGGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAAC-TAGCACCAAAGCCTTCGGGACTTAGCCCGGA
26685025 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
118 6 0.07
119 67 0.74
120 17 0.19
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCTGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:26691757 original size:77 final size:77
Alignment explanation
Indices: 26691627--26691769 Score: 214
Period size: 77 Copynumber: 1.9 Consensus size: 77
26691617 TGGTCACATG
* *
26691627 GTGTGACCACAAAAGAATTGAAAAATTTTGCTAAGTTCTAAAAATTCTAAATGTGTTTGGTTTGG
1 GTGTGACCACAAAAGAATTGAAAAAATTTGCTAAGTTCTAAAAATTCTAAATGTGTTCGGTTTGG
26691692 TTCTGACCGCCC
66 TTCTGACCGCCC
* * * * * *
26691704 GTGTGACCACAACAGAATTGAAAAAATTTGCTATGTTTTGAAATTTCTGAATGTGTTCGGTTTGG
1 GTGTGACCACAAAAGAATTGAAAAAATTTGCTAAGTTCTAAAAATTCTAAATGTGTTCGGTTTGG
26691769 T
66 T
26691770 CCCGACCTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
77 58 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (77 bp):
GTGTGACCACAAAAGAATTGAAAAAATTTGCTAAGTTCTAAAAATTCTAAATGTGTTCGGTTTGG
TTCTGACCGCCC
Found at i:26697072 original size:40 final size:40
Alignment explanation
Indices: 26697002--26697189 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
26696992 CGGATGATAA
* *
26697002 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
26697042 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
26697082 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
26697122 CGAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
26697162 CGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGAAGGCATTTGTGCGAGTTA-CTATATC
26697190 TGGTTAAATC
Statistics
Matches: 140, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
39 2 0.01
40 137 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:26708934 original size:45 final size:45
Alignment explanation
Indices: 26708884--26709060 Score: 250
Period size: 45 Copynumber: 3.9 Consensus size: 45
26708874 CGATATCCTT
*
26708884 TCACTGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACTGGCATTATAGCCTGCTAGGCTC-AAAGGCCCAAATAGTATC
* *
26708929 TCACTGGCATTGTAGCCTGCTAGGCTCAAAGGCCTAAATAGTATC
1 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
* *
26708974 TCA-TCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTC
1 TCACT-GGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
* * *
26709019 TCACCGGAATTATAGCCTACTAGGCTCAAAGGCCCAAATAGT
1 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGT
26709061 GTCGTACGAT
Statistics
Matches: 118, Mismatches: 11, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
44 4 0.03
45 114 0.97
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
Found at i:26711336 original size:31 final size:31
Alignment explanation
Indices: 26711301--26711360 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
26711291 CCTTGAGGTG
26711301 GGAATTTTGACATGCAAATCCACCTATTTGT
1 GGAATTTTGACATGCAAATCCACCTATTTGT
26711332 GGAATTTTGACATGCAAATCCACCTATTT
1 GGAATTTTGACATGCAAATCCACCTATTT
26711361 CATACTATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (31 bp):
GGAATTTTGACATGCAAATCCACCTATTTGT
Found at i:26716417 original size:45 final size:45
Alignment explanation
Indices: 26716363--26716466 Score: 156
Period size: 45 Copynumber: 2.3 Consensus size: 45
26716353 TTTCACTGGA
26716363 ATTATAGCCTGCTAGGATCGAAA-GCCCGAATAGTATCTCACCGGC
1 ATTATAGCCTGCTAGGATC-AAAGGCCCGAATAGTATCTCACCGGC
* * * *
26716408 ATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATGTCACCGGT
1 ATTATAGCCTGCTAGGATCAAAGGCCCGAATAGTATCTCACCGGC
26716453 ATTATAGCCTGCTA
1 ATTATAGCCTGCTA
26716467 TGTAACACCC
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
44 3 0.06
45 50 0.94
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (45 bp):
ATTATAGCCTGCTAGGATCAAAGGCCCGAATAGTATCTCACCGGC
Found at i:26717955 original size:39 final size:39
Alignment explanation
Indices: 26717871--26718023 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
26717861 TATGGTAACC
** * *
26717871 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
26717911 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
26717950 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
26717989 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
26718024 TCGAACATTC
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 86 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:26717997 original size:78 final size:79
Alignment explanation
Indices: 26717840--26718022 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
26717830 TCGTTCAAAC
* * **
26717840 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
26717905 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** * *
26717920 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
26717984 CAATTTGCACAATT
66 CAATTTGCACAATT
26717998 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
26718023 CTCGAACATT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:26725475 original size:38 final size:39
Alignment explanation
Indices: 26725362--26725504 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
26725352 CCGCACAAAG
*
26725362 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
26725402 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
26725441 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
26725479 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
26725505 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:26725483 original size:77 final size:79
Alignment explanation
Indices: 26725322--26725503 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
26725312 TCGTTCAAAC
* * **
26725322 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
26725387 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
26725402 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
26725465 CAATTTGCACAATT
66 CAATTTGCACAATT
26725479 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
26725504 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:26729460 original size:32 final size:32
Alignment explanation
Indices: 26729424--26729487 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
26729414 ACACCTTGAG
26729424 GTGGGAATTTTGACATGCAAATCCACCTATTT
1 GTGGGAATTTTGACATGCAAATCCACCTATTT
26729456 GTGGGAATTTTGACATGCAAATCCACCTATTT
1 GTGGGAATTTTGACATGCAAATCCACCTATTT
26729488 CATACTATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (32 bp):
GTGGGAATTTTGACATGCAAATCCACCTATTT
Found at i:26742271 original size:26 final size:26
Alignment explanation
Indices: 26742235--26742288 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
26742225 ATTCTGCCTC
26742235 TGTTTCACAATCAGATAGCCCATTCT
1 TGTTTCACAATCAGATAGCCCATTCT
26742261 TGTTTCACAATCAGATAGCCCATTCT
1 TGTTTCACAATCAGATAGCCCATTCT
26742287 TG
1 TG
26742289 GTGATCTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (26 bp):
TGTTTCACAATCAGATAGCCCATTCT
Found at i:26751892 original size:23 final size:22
Alignment explanation
Indices: 26751866--26751913 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
26751856 CATAGTCACA
*
26751866 AGGCCTTGTGCCTCCTTTCATAC
1 AGGCCATGTGCCTCC-TTCATAC
*
26751889 AGG-CATGTGCCTCCTTCATAT
1 AGGCCATGTGCCTCCTTCATAC
26751910 AGGC
1 AGGC
26751914 GCGTTGACCC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 9 0.41
22 10 0.45
23 3 0.14
ACGTcount: A:0.17, C:0.31, G:0.21, T:0.31
Consensus pattern (22 bp):
AGGCCATGTGCCTCCTTCATAC
Found at i:26751908 original size:21 final size:22
Alignment explanation
Indices: 26751872--26751913 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
26751862 CACAAGGCCT
26751872 TGTGCCTCCTTTCATACAGGCA
1 TGTGCCTCCTTTCATACAGGCA
*
26751894 TGTGCCTCC-TTCATATAGGC
1 TGTGCCTCCTTTCATACAGGC
26751914 GCGTTGACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.17, C:0.31, G:0.19, T:0.33
Consensus pattern (22 bp):
TGTGCCTCCTTTCATACAGGCA
Found at i:26764287 original size:18 final size:19
Alignment explanation
Indices: 26764249--26764292 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
26764239 GTCTTTTTCA
**
26764249 AAATAAAAATAATTGACAT
1 AAATAAAAATAAAAGACAT
26764268 AAATAAAAATAAAAGA-AT
1 AAATAAAAATAAAAGACAT
*
26764286 AACTAAA
1 AAATAAA
26764293 TATTTAGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.20
Consensus pattern (19 bp):
AAATAAAAATAAAAGACAT
Found at i:26767172 original size:25 final size:23
Alignment explanation
Indices: 26767144--26767189 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
26767134 TTGGCTTTTA
26767144 TACATCAATTAACTATTAATTATTC
1 TACATCAATTAA-T-TTAATTATTC
* *
26767169 TACATTAGTTAATTTAATTAT
1 TACATCAATTAATTTAATTAT
26767190 AGATTAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 1 0.05
25 10 0.53
ACGTcount: A:0.39, C:0.11, G:0.02, T:0.48
Consensus pattern (23 bp):
TACATCAATTAATTTAATTATTC
Found at i:26767693 original size:33 final size:33
Alignment explanation
Indices: 26767649--26767711 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
26767639 GTCATGGTCG
*
26767649 AATCTAGCGATGTCACATGCTAGTGTGTTTGAA
1 AATCTACCGATGTCACATGCTAGTGTGTTTGAA
26767682 AATCTACCGATGTCACATGCTAGTGTGTTT
1 AATCTACCGATGTCACATGCTAGTGTGTTT
26767712 AGAACCTACC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.35
Consensus pattern (33 bp):
AATCTACCGATGTCACATGCTAGTGTGTTTGAA
Found at i:26768871 original size:33 final size:33
Alignment explanation
Indices: 26768816--26768898 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 33
26768806 CCACACGCCT
* *
26768816 GTGTGGC-CAACACGGCCTAATTTGGCCTTGGCC
1 GTGTGGCTC-ACACGGCCCAATTTGGCCTTGACC
*
26768849 GTGTGGCTCACAAGGCCCAATTTGGCCTTGACC
1 GTGTGGCTCACACGGCCCAATTTGGCCTTGACC
*
26768882 GTGTGGTTCACACGGCC
1 GTGTGGCTCACACGGCC
26768899 TGGCCCAGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
33 43 0.98
34 1 0.02
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.24
Consensus pattern (33 bp):
GTGTGGCTCACACGGCCCAATTTGGCCTTGACC
Found at i:26771228 original size:24 final size:24
Alignment explanation
Indices: 26771196--26771245 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
26771186 AAGGCCTATT
26771196 GTGAGGAGTGGATCCTAACAACAA
1 GTGAGGAGTGGATCCTAACAACAA
26771220 GTGAGGAGTGGATCCTAACAACAA
1 GTGAGGAGTGGATCCTAACAACAA
26771244 GT
1 GT
26771246 CTTTGTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.16, G:0.30, T:0.18
Consensus pattern (24 bp):
GTGAGGAGTGGATCCTAACAACAA
Found at i:26777662 original size:40 final size:40
Alignment explanation
Indices: 26777604--26777860 Score: 302
Period size: 40 Copynumber: 6.5 Consensus size: 40
26777594 AACCGAGTCT
* * * * *
26777604 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * * ** * *
26777643 CTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * * *
26777683 CTTCGGGTCTTAGCCCGAATATAA-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGC
* *
26777723 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
*
26777763 CTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* *
26777803 CTTCGGGACTTAGCCCAGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
26777843 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
26777861 GTATCATTCA
Statistics
Matches: 188, Mismatches: 27, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
39 9 0.05
40 178 0.95
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:26779292 original size:29 final size:29
Alignment explanation
Indices: 26779250--26779307 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
26779240 CAAGAGAGAA
26779250 AAAAAAGGATGAACAATTTTTTTTCTTTT
1 AAAAAAGGATGAACAATTTTTTTTCTTTT
26779279 AAAAAAGGATGAACAATTTTTTTTCTTTT
1 AAAAAAGGATGAACAATTTTTTTTCTTTT
26779308 CTTTTCTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (29 bp):
AAAAAAGGATGAACAATTTTTTTTCTTTT
Found at i:26781839 original size:35 final size:35
Alignment explanation
Indices: 26781790--26781858 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
26781780 TGGCTACGTA
* *
26781790 TAAATAATTAATAATA-ACTACTATGTAATTTAGTG
1 TAAACAATTAATAATATA-TACTATGAAATTTAGTG
*
26781825 TAAACAATTTATAATATATACTATGAAATTTAGT
1 TAAACAATTAATAATATATACTATGAAATTTAGT
26781859 TAATTATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 29 0.97
36 1 0.03
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (35 bp):
TAAACAATTAATAATATATACTATGAAATTTAGTG
Found at i:26783546 original size:26 final size:26
Alignment explanation
Indices: 26783516--26783567 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
26783506 ATATGTTTTA
26783516 ATTTTACTATGTAAATATTTTTAGTC
1 ATTTTACTATGTAAATATTTTTAGTC
26783542 ATTTTACTATGTAAATATTTTTAGTC
1 ATTTTACTATGTAAATATTTTTAGTC
26783568 TTCGTGAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (26 bp):
ATTTTACTATGTAAATATTTTTAGTC
Found at i:26786110 original size:86 final size:85
Alignment explanation
Indices: 26786020--26786391 Score: 332
Period size: 86 Copynumber: 4.4 Consensus size: 85
26786010 AATAATAATA
* *
26786020 AAAATTGAATAAAATCTGTTCCGGGATTTATTCCCGCCGTTTAACAGATTTTATTCCATTTTTTA
1 AAAATTGAATAAAATCTGTTTCGGGATTTATTCCCACCGTTTAACAGATTTTATTCCA-TTTTTA
26786085 TTTTGTTTCCAAACAAGAATT
65 TTTTGTTTCCAAACAAGAATT
* * * ** * *
26786106 AAAATTAAATAAAATCTATTTCGGAATTTATTCCCGTCGTTCAATAGATTTTATTCCATTTTTAT
1 AAAATTGAATAAAATCTGTTTCGGGATTTATTCCCACCGTTTAACAGATTTTATTCCATTTTTAT
* *
26786171 TTTATTTCCAAA-ATGAGTATT
66 TTTGTTTCCAAACA--AGAATT
* *** * *
26786192 AAAATTTAATAAAATCTGTTTCAAAATTTATTCCCACCGTTTAACAGATTTTACTCTATTTTTTT
1 AAAATTGAATAAAATCTGTTTCGGGATTTATTCCCACCGTTTAACAGATTTTATTCCA----TTT
* * *
26786257 TTATTTAGTTGCCAAACGAGAAATT
62 TTATTTTGTTTCCAAACAAG-AATT
* * * * *
26786282 -AAA-T---T-AAATATGTTTCGGGATTTATTCCTACCATTTAACAAATTTTATTCGATTTTTAT
1 AAAATTGAATAAAATCTGTTTCGGGATTTATTCCCACCGTTTAACAGATTTTATTCCATTTTTAT
* * ** *
26786341 TTTGCTCCCAAATTATAATT
66 TTTGTTTCCAAACAAGAATT
26786361 -AAATTGAAT--AATCTGTTTCGGGATTTATTCC
1 AAAATTGAATAAAATCTGTTTCGGGATTTATTCC
26786392 TGTCATTCAA
Statistics
Matches: 234, Mismatches: 40, Indels: 28
0.77 0.13 0.09
Matches are distributed among these distances:
79 7 0.03
80 18 0.08
82 21 0.09
83 1 0.00
84 39 0.17
85 19 0.08
86 104 0.44
88 1 0.00
89 5 0.02
90 19 0.08
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.44
Consensus pattern (85 bp):
AAAATTGAATAAAATCTGTTTCGGGATTTATTCCCACCGTTTAACAGATTTTATTCCATTTTTAT
TTTGTTTCCAAACAAGAATT
Found at i:26786488 original size:30 final size:30
Alignment explanation
Indices: 26786452--26786513 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
26786442 ATAATTTTGT
*
26786452 TTCGAGATTTAATCCTATCGTTTAACATAC
1 TTCGAGATTTAATCCTATCATTTAACATAC
*
26786482 TTCGAGATTTAATCCTGTCATTTAACATAC
1 TTCGAGATTTAATCCTATCATTTAACATAC
26786512 TT
1 TT
26786514 GATTTTGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (30 bp):
TTCGAGATTTAATCCTATCATTTAACATAC
Found at i:26786877 original size:104 final size:103
Alignment explanation
Indices: 26786685--26786877 Score: 242
Period size: 104 Copynumber: 1.8 Consensus size: 103
26786675 AGCAGAACAT
* * ** * * * *
26786685 CGTCGTTTTATGTTGAGCTTTAGTGTTATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATTGA
1 CGTCGTTTTATGTTAAGCCTTAGTGACATTAACGGCACTTTTTGAAAAACACCGCTAAAGATCGA
*
26786750 GCATTAGCTACGTTTTGCAAAAAAAACTCATCAAGACGC
66 GCATTAGCGACGTTTTG-AAAAAAAACTCATCAAGACGC
* *
26786789 CGTCGTTTTTTGTTAAGCCTTAGTGACATTAACGGCACTTTTTGAAAAATACCGCTAAAGATCGA
1 CGTCGTTTTATGTTAAGCCTTAGTGACATTAACGGCACTTTTTGAAAAACACCGCTAAAGATCGA
* *
26786854 GCTTTAGCGGCGCTTTTTGAAAAA
66 GCATTAGCGACG--TTTTGAAAAA
26786878 TGCCACAAAA
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
104 64 0.86
105 5 0.07
106 5 0.07
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (103 bp):
CGTCGTTTTATGTTAAGCCTTAGTGACATTAACGGCACTTTTTGAAAAACACCGCTAAAGATCGA
GCATTAGCGACGTTTTGAAAAAAAACTCATCAAGACGC
Found at i:26786943 original size:111 final size:114
Alignment explanation
Indices: 26786770--26786980 Score: 302
Period size: 111 Copynumber: 1.9 Consensus size: 114
26786760 CGTTTTGCAA
* ** *
26786770 AAAAAACTCATCAAGACGCCGTCGTTTTTTGTTAAGCCTTAGTGACATTAACGGCACTTTTTGAA
1 AAAAAACTCATCAACACGCCGTCCCTTTTTGTTAAGCCTTAGTGACATTAACGACACTTTTTGAA
*
26786835 AAATACCGCTAAAGATCGAGCTTTAGCGGCGCTTTTTGAAAAATGCCAC
66 AAAGACCGCTAAAGATCGAGCTTTAGCGGCGCTTTTTGAAAAATGCCAC
* * *
26786884 AAAAAATTCATCAACACGCCG-CCCTTTTTG-T-AGCCTTAGTGGCATTAGCGACACTTTTTGAA
1 AAAAAACTCATCAACACGCCGTCCCTTTTTGTTAAGCCTTAGTGACATTAACGACACTTTTTGAA
* * *
26786946 AAAGGCCGCTATAGATCGAGCTTTAGTGGCGCTTT
66 AAAGACCGCTAAAGATCGAGCTTTAGCGGCGCTTT
26786981 GTCAAAACGC
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
111 59 0.69
112 1 0.01
113 7 0.08
114 19 0.22
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (114 bp):
AAAAAACTCATCAACACGCCGTCCCTTTTTGTTAAGCCTTAGTGACATTAACGACACTTTTTGAA
AAAGACCGCTAAAGATCGAGCTTTAGCGGCGCTTTTTGAAAAATGCCAC
Found at i:26787388 original size:15 final size:16
Alignment explanation
Indices: 26787368--26787404 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
26787358 AATATTTTAA
26787368 GGTTTATA-GATTATG
1 GGTTTATAGGATTATG
26787383 GGTTTA-AGGATTATG
1 GGTTTATAGGATTATG
26787398 GGTTTAT
1 GGTTTAT
26787405 GGTTTAAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 1 0.05
15 19 0.95
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (16 bp):
GGTTTATAGGATTATG
Found at i:26787388 original size:22 final size:22
Alignment explanation
Indices: 26787363--26787413 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
26787353 GAGTTAATAT
*
26787363 TTTAAGGTTTAT-AGATTATGGG
1 TTTAAGGATTATGAGATTAT-GG
* *
26787385 TTTAAGGATTATGGGTTTATGG
1 TTTAAGGATTATGAGATTATGG
26787407 TTTAAGG
1 TTTAAGG
26787414 GTTGGGTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.45
Consensus pattern (22 bp):
TTTAAGGATTATGAGATTATGG
Found at i:26787410 original size:7 final size:7
Alignment explanation
Indices: 26787293--26787410 Score: 65
Period size: 7 Copynumber: 16.4 Consensus size: 7
26787283 TTAATTATCA
*
26787293 TTATAGT
1 TTATGGT
*
26787300 TTAAGGT
1 TTATGGT
*
26787307 TTATAGT
1 TTATGGT
*
26787314 TTAAGGT
1 TTATGGT
*
26787321 ATATGGT
1 TTATGGT
*
26787328 TTAGGGT
1 TTATGGT
*
26787335 TTAGGGT
1 TTATGGT
26787342 TTATGGT
1 TTATGGT
*
26787349 TGATGAGT
1 TTATG-GT
* **
26787357 TAATATT
1 TTATGGT
*
26787364 TTAAGGT
1 TTATGGT
* *
26787371 TTATAGA
1 TTATGGT
26787378 TTATGGGT
1 TTAT-GGT
* *
26787386 TTAAGGA
1 TTATGGT
26787393 TTATGGGT
1 TTAT-GGT
26787401 TTATGGT
1 TTATGGT
26787408 TTA
1 TTA
26787411 AGGGTTGGGT
Statistics
Matches: 80, Mismatches: 28, Indels: 6
0.70 0.25 0.05
Matches are distributed among these distances:
7 65 0.81
8 15 0.19
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.47
Consensus pattern (7 bp):
TTATGGT
Found at i:26787415 original size:15 final size:15
Alignment explanation
Indices: 26787325--26787416 Score: 53
Period size: 15 Copynumber: 6.3 Consensus size: 15
26787315 TAAGGTATAT
*
26787325 GGTTTAGGGTTT-AG
1 GGTTTATGGTTTAAG
* *
26787339 GGTTTATGGTTGATG
1 GGTTTATGGTTTAAG
* * **
26787354 AGTTAATATTTTAA-
1 GGTTTATGGTTTAAG
* * *
26787368 GGTTTATAGATTATG
1 GGTTTATGGTTTAAG
* * *
26787383 GGTTTAAGGATTATG
1 GGTTTATGGTTTAAG
26787398 GGTTTATGGTTTAAG
1 GGTTTATGGTTTAAG
26787413 GGTT
1 GGTT
26787417 GGGTTTGAGA
Statistics
Matches: 57, Mismatches: 19, Indels: 3
0.72 0.24 0.04
Matches are distributed among these distances:
14 19 0.33
15 38 0.67
ACGTcount: A:0.23, C:0.00, G:0.32, T:0.46
Consensus pattern (15 bp):
GGTTTATGGTTTAAG
Done.