Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 110 of 427
Found at i:29030318 original size:24 final size:24
Alignment explanation
Indices: 29030254--29030370 Score: 159
Period size: 23 Copynumber: 4.9 Consensus size: 24
29030244 GCTTTATCAT
* *
29030254 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTCA
29030279 ATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTCA
*
29030302 ATAACTGGGGCATAAGCCCTTT-T
1 ATAACTGGGGCATAAGCCCTTTCA
*
29030325 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTCA
29030349 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
29030371 TTCACTTCCT
Statistics
Matches: 85, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
23 39 0.46
24 38 0.45
25 8 0.09
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTCA
Found at i:29030343 original size:47 final size:47
Alignment explanation
Indices: 29030254--29030371 Score: 177
Period size: 47 Copynumber: 2.5 Consensus size: 47
29030244 GCTTTATCAT
*
29030254 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAGCCCTTTCA
*
29030302 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCA-AAGCCCTTTCA
29030349 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
29030372 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
46 12 0.18
47 42 0.64
48 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAGCCCTTTCA
Found at i:29030447 original size:20 final size:20
Alignment explanation
Indices: 29030422--29030481 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
29030412 TATGATTACC
29030422 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
29030442 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
29030462 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
29030482 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:29030452 original size:11 final size:11
Alignment explanation
Indices: 29030422--29030476 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
29030412 TATGATTACC
29030422 TCATGTGCATA
1 TCATGTGCATA
*
29030433 TCA--TACATA
1 TCATGTGCATA
29030442 TCATGTGCATA
1 TCATGTGCATA
* *
29030453 TCA--TACATT
1 TCATGTGCATA
29030462 TCATGTGCATA
1 TCATGTGCATA
29030473 TCAT
1 TCAT
29030477 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:29030565 original size:24 final size:24
Alignment explanation
Indices: 29030524--29030570 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
29030514 ATACATAAAC
* * *
29030524 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
29030548 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
29030571 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:29036957 original size:26 final size:26
Alignment explanation
Indices: 29036921--29036974 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
29036911 CACACTGAGC
29036921 TCGTTTAGCTAAAATCTCATTATCAA
1 TCGTTTAGCTAAAATCTCATTATCAA
29036947 TCGTTTAGCTAAAATCTCATTATCAA
1 TCGTTTAGCTAAAATCTCATTATCAA
29036973 TC
1 TC
29036975 TTCTAAAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.39
Consensus pattern (26 bp):
TCGTTTAGCTAAAATCTCATTATCAA
Found at i:29050187 original size:18 final size:21
Alignment explanation
Indices: 29050152--29050203 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
29050142 AGGAATTACA
29050152 AAAAATTT-AAAATAATTT-T
1 AAAAATTTCAAAATAATTTAT
*
29050171 -TAAATTTCAAAAT-ATTTAT
1 AAAAATTTCAAAATAATTTAT
29050190 AAAAATTTCAAAAT
1 AAAAATTTCAAAAT
29050204 TTATATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 10 0.36
19 6 0.21
20 12 0.43
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAATTTCAAAATAATTTAT
Found at i:29050203 original size:28 final size:28
Alignment explanation
Indices: 29050145--29050205 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
29050135 TCTCAAAAGG
* **
29050145 AATTACAAAAAATTTAAAATAATTTTTA
1 AATTTCAAAAAATTTAAAATAATTTCAA
*
29050173 AATTTCAAAATATTTATAAA-AATTTCAA
1 AATTTCAAAAAATTTA-AAATAATTTCAA
29050201 AATTT
1 AATTT
29050206 ATATTTTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 25 0.89
29 3 0.11
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (28 bp):
AATTTCAAAAAATTTAAAATAATTTCAA
Found at i:29053259 original size:10 final size:10
Alignment explanation
Indices: 29053244--29053272 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
29053234 TGAGGCCACA
29053244 TTTTATTTTT
1 TTTTATTTTT
29053254 TTTTA-TTTT
1 TTTTATTTTT
29053263 TTTTATTTTT
1 TTTTATTTTT
29053273 AATTATGTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (10 bp):
TTTTATTTTT
Found at i:29056487 original size:21 final size:21
Alignment explanation
Indices: 29056462--29056504 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
29056452 AAATAATAAA
29056462 TAAAATTATTAAAAACTATGT
1 TAAAATTATTAAAAACTATGT
29056483 TAAAATTATTAAAAACTATGT
1 TAAAATTATTAAAAACTATGT
29056504 T
1 T
29056505 TATGTTCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.40
Consensus pattern (21 bp):
TAAAATTATTAAAAACTATGT
Found at i:29056733 original size:21 final size:18
Alignment explanation
Indices: 29056692--29056734 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 18
29056682 TATATTTATT
*
29056692 AAATTATTATAAAAATTA
1 AAATTATTATAAAAATGA
29056710 AAATTATATATATGAAAATGA
1 AAATTAT-TATA--AAAATGA
29056731 AAAT
1 AAAT
29056735 AAAAACAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 7 0.33
19 4 0.19
21 10 0.48
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (18 bp):
AAATTATTATAAAAATGA
Found at i:29063257 original size:193 final size:192
Alignment explanation
Indices: 29062909--29063297 Score: 679
Period size: 193 Copynumber: 2.0 Consensus size: 192
29062899 TTGTCGCTCC
* * *
29062909 TCTGTTGCCTATACCGGTCGTATATCATGTGTGGGATTAGAAACCTTATCTTTTCATTATCGTTT
1 TCTGTTGCCTATACCGATCGCATATCATGTGTGGGATTAGAAACCTTATCTTTTCATTATCATTT
* *
29062974 TTACGAAGTTATTGTTTCGATGTATTTTGATTTTGTGTTAACCCAAAGATTTTGCGTTCTAGACA
66 TTACGAAGTTACTGTTTCGATATATTTTGATTTTGTGTTAACCCAAAGATTTTGCGTTCTAGACA
*
29063039 TTGGAAATGATGAGAAATTGTCACCTTCTATATATTTTGATAAGGTAAAGGTTAGGGACGAT
131 TTGGAAATGATGAGAAATCGTCACCTTCTATATATTTTGATAAGGTAAAGGTTAGGGACGAT
29063101 TCTGTTGCCTATACCGATCGCATATCATGTGTGGGATTAGAAACCTTATCTTTTCATTATCATTT
1 TCTGTTGCCTATACCGATCGCATATCATGTGTGGGATTAGAAACCTTATCTTTTCATTATCATTT
* * *
29063166 TTATGAAGTTACTGTTTTGATATATTTTTGATTTTGTGTTAACCCAAAGATTTTGGGTTCTAGAC
66 TTACGAAGTTACTGTTTCGATATA-TTTTGATTTTGTGTTAACCCAAAGATTTTGCGTTCTAGAC
*
29063231 ATTGGAAGTGATGAGAAATCGTCACCTTCTATATATTTTGATAAGGTAAAGGTTAGGGACGAT
130 ATTGGAAATGATGAGAAATCGTCACCTTCTATATATTTTGATAAGGTAAAGGTTAGGGACGAT
29063294 TCTG
1 TCTG
29063298 GTGGCCAAAA
Statistics
Matches: 186, Mismatches: 10, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
192 82 0.44
193 104 0.56
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (192 bp):
TCTGTTGCCTATACCGATCGCATATCATGTGTGGGATTAGAAACCTTATCTTTTCATTATCATTT
TTACGAAGTTACTGTTTCGATATATTTTGATTTTGTGTTAACCCAAAGATTTTGCGTTCTAGACA
TTGGAAATGATGAGAAATCGTCACCTTCTATATATTTTGATAAGGTAAAGGTTAGGGACGAT
Found at i:29064124 original size:14 final size:14
Alignment explanation
Indices: 29064107--29064146 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
29064097 TCTGATTTGG
29064107 TACATCTGCATACA
1 TACATCTGCATACA
29064121 TACATCTGCATACA
1 TACATCTGCATACA
* *
29064135 TGCATTTGCATA
1 TACATCTGCATA
29064147 AAATGTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.33
Consensus pattern (14 bp):
TACATCTGCATACA
Found at i:29068584 original size:28 final size:27
Alignment explanation
Indices: 29068518--29068587 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
29068508 ATAGTGAGTC
*
29068518 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
29068545 CGCACACGTAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
29068573 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
29068588 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:29071342 original size:48 final size:48
Alignment explanation
Indices: 29071281--29071401 Score: 199
Period size: 48 Copynumber: 2.5 Consensus size: 48
29071271 ATAATGAGAG
29071281 CTAGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGAGACGAGTA
1 CTAGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGAGACGAGTA
* *
29071329 CTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAGTG
1 CTAGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGAGACGAGTA
* *
29071377 TTAGTGTAAGA-CATGTCTGGGACAT
1 CTAGTGTAAGACCATGTTTGGGACAT
29071402 ACATCGGCCT
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
47 13 0.19
48 56 0.81
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGAGACGAGTA
Found at i:29071435 original size:46 final size:45
Alignment explanation
Indices: 29071232--29071499 Score: 179
Period size: 48 Copynumber: 5.8 Consensus size: 45
29071222 TGAGATATGT
* * *
29071232 GTGCCAGTGTTAGACATGTCTGGGACATGCATTGGCC-ACATAATGA-
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAC--GA-GAC
* * * * * *
29071278 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCAT-TGAGAC
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTACGAGAC
* * * * *
29071324 GAGTACTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT-TGAGAC
1 --GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTACGAGAC
** * *
29071372 GAGTGTTAGTGTAAGACATGTCTGGGACATACATCGGCCT-CGAGAT
1 --GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGAC
* * *
29071418 GTTAGCCAGTGTCAGACATGTCTGGGACATGCGTCAG-CTACGAGAC
1 G-T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGAC
*
29071464 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
29071500 ACAGTTACAT
Statistics
Matches: 182, Mismatches: 30, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
44 30 0.16
45 6 0.03
46 57 0.31
47 26 0.14
48 63 0.35
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (45 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGAC
Found at i:29073843 original size:11 final size:11
Alignment explanation
Indices: 29073827--29073901 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
29073817 ACATGATATT
29073827 ATGATATGCAC
1 ATGATATGCAC
*
29073838 ATGATATG--T
1 ATGATATGCAC
*
29073847 ATGATATACAC
1 ATGATATGCAC
* *
29073858 ATGACATG--T
1 ATGATATGCAC
29073867 ATGATATGCAC
1 ATGATATGCAC
*
29073878 ATGATATG--T
1 ATGATATGCAC
29073887 ATGATATGCAC
1 ATGATATGCAC
29073898 ATGA
1 ATGA
29073902 GATGTTCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:29073851 original size:20 final size:20
Alignment explanation
Indices: 29073803--29073906 Score: 165
Period size: 20 Copynumber: 5.2 Consensus size: 20
29073793 CCCTAGGGTT
*
29073803 TATGTATGGTATGCACATGA
1 TATGTATGATATGCACATGA
29073823 TAT-TATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
29073842 TATGTATGATATACACATGA
1 TATGTATGATATGCACATGA
*
29073862 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
29073882 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
29073902 GATGT
1 TATGT
29073907 TCATAAATGC
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
19 18 0.23
20 59 0.77
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:29073978 original size:24 final size:24
Alignment explanation
Indices: 29073951--29074166 Score: 280
Period size: 24 Copynumber: 9.0 Consensus size: 24
29073941 GGAGGAAGTG
29073951 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
29073975 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
29073999 TAAAAGGGCTTATGCCCCAGTTATTAT
1 CAAAAGGGCTTATGCCCCAG---TTAT
*
29074026 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
29074050 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
29074074 -TAAAGGGCTTATGCCCCAGTGAT
1 CAAAAGGGCTTATGCCCCAGTTAT
29074097 CAAAAGGGCTTATGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
29074120 -AAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
29074143 -AAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
29074167 ATGATAAAGC
Statistics
Matches: 172, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
22 21 0.12
23 29 0.17
24 98 0.57
27 24 0.14
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:29074075 original size:75 final size:75
Alignment explanation
Indices: 29073951--29074166 Score: 313
Period size: 75 Copynumber: 3.0 Consensus size: 75
29073941 GGAGGAAGTG
29073951 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTATGCCC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTATGCCC
*
29074016 CAGTTATTAT
66 CAGTTATGAT
*
29074026 TAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATT-AAAGGGCTTATGCCC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTATGCCC
29074090 CAG---TGAT
66 CAGTTATGAT
* * *
29074097 CAAAAGGGCTTATGCCCCAGTTA--AAAAGGGCTTTTGCCCCAGTTA-TAAAAGAGGC-TAGGCC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATTAAAAG-GGCTTATGCC
29074158 TCCAGTTAT
65 -CCAGTTAT
29074167 ATGATAAAGC
Statistics
Matches: 129, Mismatches: 6, Indels: 14
0.87 0.04 0.09
Matches are distributed among these distances:
68 1 0.01
69 29 0.22
70 7 0.05
71 25 0.19
73 1 0.01
74 18 0.14
75 48 0.37
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (75 bp):
CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTATGCCC
CAGTTATGAT
Found at i:29074099 original size:47 final size:47
Alignment explanation
Indices: 29073951--29074167 Score: 287
Period size: 47 Copynumber: 4.5 Consensus size: 47
29073941 GGAGGAAGTG
*
29073951 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTAT
*
29073999 TAAAAGGGCTTATGCCCCAGTTATTATTAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAG---TTA-TAAAAGGGCTTATGCCCCAGTTAT
* * *
29074050 CAAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTGAT
1 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
*
29074097 CAAAAGGGCTTATGCCCCAGTTA-AAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
*
29074143 -AAAAGAGGC-TAGGCCTCCAGTTATA
1 CAAAAG-GGCTTATGCC-CCAGTTATA
29074168 TGATAAAGCA
Statistics
Matches: 151, Mismatches: 11, Indels: 15
0.85 0.06 0.08
Matches are distributed among these distances:
45 10 0.07
46 30 0.20
47 45 0.30
48 22 0.15
51 43 0.28
52 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
Found at i:29081457 original size:8 final size:8
Alignment explanation
Indices: 29081446--29081475 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
29081436 GCGATAAATA
29081446 CCGAAAAG
1 CCGAAAAG
29081454 CCGAAAAG
1 CCGAAAAG
*
29081462 CCGAAATG
1 CCGAAAAG
29081470 CCGAAA
1 CCGAAA
29081476 TTCTGGCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.47, C:0.27, G:0.23, T:0.03
Consensus pattern (8 bp):
CCGAAAAG
Found at i:29081975 original size:20 final size:20
Alignment explanation
Indices: 29081950--29082054 Score: 183
Period size: 20 Copynumber: 5.2 Consensus size: 20
29081940 CCCTAGGGTT
*
29081950 TATGTATGGTATGCACATGA
1 TATGTATGATATGCACATGA
29081970 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
29081990 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
29082010 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
29082030 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
29082050 GATGT
1 TATGT
29082055 TCATAAATGC
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 81 1.00
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:29081978 original size:9 final size:9
Alignment explanation
Indices: 29081966--29082042 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
29081956 TGGTATGCAC
29081966 ATGATATGT
1 ATGATATGT
*
29081975 ATGATATGCAC
1 ATGATATG--T
29081986 ATGATATGT
1 ATGATATGT
*
29081995 ATGATATGCAC
1 ATGATATG--T
*
29082006 ATGACATGT
1 ATGATATGT
*
29082015 ATGATATGCAC
1 ATGATATG--T
29082026 ATGATATGT
1 ATGATATGT
29082035 ATGATATG
1 ATGATATG
29082043 CACATGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:29082156 original size:24 final size:24
Alignment explanation
Indices: 29082100--29082289 Score: 251
Period size: 24 Copynumber: 8.0 Consensus size: 24
29082090 GAGGAAGTGC
29082100 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
29082124 -AAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
29082147 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
29082171 AAAGGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
29082195 -AAAGGGCTTATGCCCCAGTGATC
1 AAAAGGGCTTATGCCCCAGTTATT
**
29082218 AAAAGGGCTTATGCCCCAGTTACA
1 AAAAGGGCTTATGCCCCAGTTATT
* *
29082242 AAAAGGGCTTTTGCCCCAGTTACT
1 AAAAGGGCTTATGCCCCAGTTATT
*
29082266 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
29082290 ATGATAAAGC
Statistics
Matches: 146, Mismatches: 16, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
23 42 0.29
24 94 0.64
25 10 0.07
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:29082169 original size:47 final size:47
Alignment explanation
Indices: 29082100--29082268 Score: 241
Period size: 47 Copynumber: 3.6 Consensus size: 47
29082090 GAGGAAGTGC
*
29082100 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
29082147 AAAAGGGCTTATGCCCCAGTTATCAAAGGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAA-GGGCTTATGCCCCAGTTATT
* * **
29082195 -AAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTATGCCCCAGTTACA
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATT
* *
29082242 AAAAGGGCTTTTGCCCCAGTTACTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
29082269 AGAGGCTAGG
Statistics
Matches: 109, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
47 68 0.62
48 41 0.38
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:29082222 original size:71 final size:70
Alignment explanation
Indices: 29082099--29082268 Score: 268
Period size: 71 Copynumber: 2.4 Consensus size: 70
29082089 GGAGGAAGTG
* * *
29082099 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTATGCCCC
29082164 AGTTA
66 AGTTA
*
29082169 TCAAAGGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTATGCCC
1 -CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTATGCCC
29082234 CAGTTA
65 CAGTTA
* *
29082240 CAAAAAGGGCTTTTGCCCCAGTTACTAAA
1 C-AAAAGGGCTTATGCCCCAGTTATTAAA
29082269 AGAGGCTAGG
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
70 1 0.01
71 90 0.99
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (70 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTATGCCCC
AGTTA
Found at i:29113884 original size:40 final size:40
Alignment explanation
Indices: 29113818--29113984 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
29113808 GAATTGAATG
* * *
29113818 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
29113857 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
29113897 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
29113937 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
29113977 ATATCCGG
1 ATATCCGG
29113985 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:29117596 original size:16 final size:17
Alignment explanation
Indices: 29117575--29117613 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
29117565 CTTTTATTAA
*
29117575 GTTTTTAAGATTCATTT
1 GTTTTTAAGAATCATTT
29117592 GTTTTTAAGAATCATTT
1 GTTTTTAAGAATCATTT
29117609 GTTTT
1 GTTTT
29117614 CCTTTTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.23, C:0.05, G:0.13, T:0.59
Consensus pattern (17 bp):
GTTTTTAAGAATCATTT
Found at i:29137320 original size:97 final size:97
Alignment explanation
Indices: 29137154--29137349 Score: 374
Period size: 97 Copynumber: 2.0 Consensus size: 97
29137144 ACACCACAAG
29137154 TTAATTACTTGATATATGTAATGTTTTGTTTTATCAAAAATAAAATGAATAATTTTTCATCAAAT
1 TTAATTACTTGATATATGTAATGTTTTGTTTTATCAAAAATAAAATGAATAATTTTTCATCAAAT
*
29137219 TCTCTCTTAGTTTCTGCTCAAATTTAGCTTTC
66 TCTCTCTTAGTTTCTGCTCAAATTCAGCTTTC
29137251 TTAATTACTTGATATATGTAATGTTTTGTTTTATCAAAAATAAAATGAATAATTTTTCATCAAAT
1 TTAATTACTTGATATATGTAATGTTTTGTTTTATCAAAAATAAAATGAATAATTTTTCATCAAAT
*
29137316 TCTCTTTTAGTTTCTGCTCAAATTCAGCTTTC
66 TCTCTCTTAGTTTCTGCTCAAATTCAGCTTTC
29137348 TT
1 TT
29137350 TTTTTGTTCT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 97 1.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (97 bp):
TTAATTACTTGATATATGTAATGTTTTGTTTTATCAAAAATAAAATGAATAATTTTTCATCAAAT
TCTCTCTTAGTTTCTGCTCAAATTCAGCTTTC
Found at i:29140595 original size:52 final size:52
Alignment explanation
Indices: 29140479--29140656 Score: 233
Period size: 51 Copynumber: 3.5 Consensus size: 52
29140469 ACTAGTAACT
*
29140479 CAAGTGTGGTACTATGTGAAGGCCACTTTGCAAAG--AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCA
* *
29140528 CAAGTGTCGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCA
* * *
29140580 CAAGTGTGGTACTATGTGAAGGCCACCTTGTAAAG-AAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTC-A
*
29140631 CAAGGGTGGTACTATGT-ACAGGCCAC
1 CAAGTGTGGTACTATGTGA-AGGCCAC
29140657 CGGGTATCTG
Statistics
Matches: 115, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
49 32 0.28
50 3 0.03
51 41 0.36
52 39 0.34
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCA
Found at i:29141078 original size:19 final size:19
Alignment explanation
Indices: 29141054--29141092 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
29141044 GACAGAGTCA
*
29141054 TAATGATTTTGGAATCCCT
1 TAATGATTTTGGAATACCT
29141073 TAATGATTTTGGAATACCT
1 TAATGATTTTGGAATACCT
29141092 T
1 T
29141093 GTTTTGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (19 bp):
TAATGATTTTGGAATACCT
Found at i:29144591 original size:55 final size:53
Alignment explanation
Indices: 29144491--29144692 Score: 158
Period size: 55 Copynumber: 3.7 Consensus size: 53
29144481 TTAAGGATAC
* * *
29144491 CATGTAAGACCATGCCAAGGCATGGAAATTGTTAAGGTTTCTAAGGCAAGAAAAT
1 CATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTTCTAAGGCAAGAAAAT
* * **
29144546 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTGTAAGGC-A-AAGGT
1 CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC--TAAGGCAAGAAAAT
* * * * * *
29144599 CCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TCCATAAGGCAAGGATAC
1 --CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGCAAGAAAAT
* * * * *
29144654 CACGTAAAACCATGTCGAGACATGGCAATGGTAAGTTTC
1 CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC
29144693 AAAAGGATAC
Statistics
Matches: 116, Mismatches: 24, Indels: 15
0.75 0.15 0.10
Matches are distributed among these distances:
53 42 0.36
54 13 0.11
55 61 0.53
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (53 bp):
CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGCAAGAAAAT
Found at i:29144678 original size:53 final size:54
Alignment explanation
Indices: 29144549--29144737 Score: 167
Period size: 53 Copynumber: 3.6 Consensus size: 54
29144539 AGAAAATCAT
* ** * *
29144549 GTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTGTAAGGCAAAGGTCCCAT
1 GTAAGACCATGTCAAGACATGGCATTGGTAAG-TTCCATAAGGCAAAGGTACCAC
* * *
29144604 GTAAGACCATGCCAAGGCATGGCATTGGTGAG-TCCATAAGGC-AAGGATACCAC
1 GTAAGACCATGTCAAGACATGGCATTGGTAAGTTCCATAAGGCAAAGG-TACCAC
* * * * *
29144657 GTAAAACCATGTCGAGACATGGCAATGGTAAGTTTCAAAAGG---A--TACCAC
1 GTAAGACCATGTCAAGACATGGCATTGGTAAGTTCCATAAGGCAAAGGTACCAC
* * *
29144706 GTAAGACCATGACAAGTCATGGCAATGGTAAG
1 GTAAGACCATGTCAAGACATGGCATTGGTAAG
29144738 GTACCCGTGT
Statistics
Matches: 112, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
49 34 0.30
52 5 0.04
53 38 0.34
54 7 0.06
55 28 0.25
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (54 bp):
GTAAGACCATGTCAAGACATGGCATTGGTAAGTTCCATAAGGCAAAGGTACCAC
Found at i:29144689 original size:108 final size:110
Alignment explanation
Indices: 29144490--29144692 Score: 268
Period size: 108 Copynumber: 1.9 Consensus size: 110
29144480 TTTAAGGATA
* * * * *
29144490 CCATGTAAGACCATGCCAAGGCATGGAAATTGTTAAGGTTTCTAAGGCAAGAAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTCCTAAGGCAAGAAAACCACGTAAAA
*
29144555 CCATGTCAAGACATGGCATTGATAAGTTTCTGTAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTTCTGTAAGGCAAAGGTC
* * * *
29144600 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TCCATAAGGCAAGGATACCACGTAAA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTCC-TAAGGCAAGAAAACCACGTAAA
* *
29144662 ACCATGTCGAGACATGGCAATGGTAAGTTTC
65 ACCATGTCAAGACATGGCAATGATAAGTTTC
29144693 AAAAGGATAC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
107 2 0.03
108 46 0.57
109 6 0.08
110 26 0.32
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTCCTAAGGCAAGAAAACCACGTAAAA
CCATGTCAAGACATGGCAATGATAAGTTTCTGTAAGGCAAAGGTC
Found at i:29163477 original size:192 final size:191
Alignment explanation
Indices: 29163142--29163792 Score: 817
Period size: 192 Copynumber: 3.4 Consensus size: 191
29163132 GGGTTAAGTT
* *
29163142 GCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGGTCGATGCCATGTCCC
*
29163207 AGACATGGTCTTACACTAGCTCTCGTACTTACGTGCTGATGTCATGTCCCAGACATGGTCTTACA
66 AGACATGGTCTTACACTAGCTCACGTACTTACGTGCTGATGTCATGTCCCAGACATGGTCTTACA
*
29163272 CTAGCACAACTCTTAGCCGATGCATGTCCCAAACATGTCTTACACTAGCTATCATAATCGAG
131 CTAGCACAACTCTTAGCCGATGCATGTCCCAAACATGTCTTACACTAGCTATCGT-ATCGAG
* * *
29163334 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATAGAGGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGGTCGATGCCATGTCCC
*
29163399 AGACATGGTCTTACACTAGCTCCCGTACTTACGTGCTGATGTCATGTCCCAGACATGGTCTTACA
66 AGACATGGTCTTACACTAGCTCACGTACTTACGTGCTGATGTCATGTCCCAGACATGGTCTTACA
* *
29163464 CTAGCACAACTCTTAGCTGATGCATGTCCCAAACATGTCTTACACTGGCTATCGTCATCGAG
131 CTAGCACAACTCTTAGCCGATGCATGTCCCAAACATGTCTTACACTAGCTATCGT-ATCGAG
* * * * * *
29163526 GCCGATGCCATGTGCCAAACATGGTCTTACACTAGCTCTC-GCGTATCCATGTCGATGCCATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATC--ATCGAGGTCGATGCCATGTC
* * * * *
29163590 CCAGACATGTTTTTACACT-G-ACATGT-C-T-CGTAGCTAATG-CATGTCCCAGACAT-GTCTT
64 CCAGACATGGTCTTACACTAGCTCACGTACTTACGT-GCTGATGTCATGTCCCAGACATGGTCTT
* * * *
29163648 ACACTGGCTTACATCTC-GAGGCCGATGCATGTCCCAAACATGTCTTACA-TAGGC-AGTCGTCT
128 ACACTAGC--ACAACTCTTA-GCCGATGCATGTCCCAAACATGTCTTACACTA-GCTA-TCGTAT
* *
29163710 CAAT
188 CGAG
* * * * * *
29163714 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCCGATG-CATGTCCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGGTCGATGCCATGTCCC
29163777 AGACAT-GTCTTACACT
66 AGACATGGTCTTACACT
29163793 GGTACACAAA
Statistics
Matches: 407, Mismatches: 43, Indels: 26
0.86 0.09 0.05
Matches are distributed among these distances:
184 8 0.02
185 13 0.03
186 6 0.01
187 14 0.03
188 60 0.15
189 47 0.12
190 1 0.00
191 4 0.01
192 220 0.54
193 34 0.08
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (191 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGGTCGATGCCATGTCCC
AGACATGGTCTTACACTAGCTCACGTACTTACGTGCTGATGTCATGTCCCAGACATGGTCTTACA
CTAGCACAACTCTTAGCCGATGCATGTCCCAAACATGTCTTACACTAGCTATCGTATCGAG
Found at i:29163504 original size:143 final size:146
Alignment explanation
Indices: 29163141--29163794 Score: 581
Period size: 143 Copynumber: 4.6 Consensus size: 146
29163131 TGGGTTAAGT
* * *
29163141 TGCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTATCAT-CATCGAGGTCGATGCCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAC-TCGAGCT-GATGCCATGTC
* * * * * * * *
29163205 CCAGACATGGTCTTACACTAGCTCTCGTACTTACG-TGCTGATGTCATGTCCCAGACATGGTCTT
64 CCAGACATGGTCTTACACTGGCTATCAT-CATA-GAGGCCGATGCCATGTCCCAAACATGGTCTT
*
29163269 ACACTAGCACAAC-TCTT-A
127 ACACTAGCACACCGTCTTAA
* *
29163287 -GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTATCATAATCGAGGCTGATGCCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATACTCGA-GCTGATGCCATGTCC
* *
29163349 CAGACATGGTCTTACACTGGCTATCATCATAGAGGTCGATGCCATGTCCCAGACATGGTCTTACA
65 CAGACATGGTCTTACACTGGCTATCATCATAGAGGCCGATGCCATGTCCCAAACATGGTCTTACA
* *
29163414 CTAGCTC-CCGTACTTACG
130 CTAGCACACCGT-CTTA-A
* * *
29163432 TGCTGATGTCATGTCCCAGACATGGTCTTACACTAGC-A-CA-ACTCTTAGCTGATG-CATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATACTC-GAGCTGATGCCATGTCC
* * * *
29163493 CAAACAT-GTCTTACACTGGCTATCGTCATCGAGGCCGATGCCATGTGCCAAACATGGTCTTACA
65 CAGACATGGTCTTACACTGGCTATCATCATAGAGGCCGATGCCATGTCCCAAACATGGTCTTACA
* * * **
29163557 CTAGCTCTCGCGTATCCA
130 CTAGCACAC-CGTCTTAA
* * * * *
29163575 TGTCGATGCCATGTCCCAGACATGTTTTTACACT-G--A-CATGTCTCGTAGCTAATG-CATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT-ACTCG-AGCTGATGCCATGTC
*
29163635 CCAGACAT-GTCTTACACTGGCT-TACATC-TCGAGGCCGATG-CATGTCCCAAACAT-GTCTTA
64 CCAGACATGGTCTTACACTGGCTAT-CATCATAGAGGCCGATGCCATGTCCCAAACATGGTCTTA
** *
29163695 CA-TAGGCA-GTCGTCTCAA
128 CACTA-GCACACCGTCTTAA
* * * * *
29163713 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCCGATG-CATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATACTCG-AGCTGATGCCATGTCC
*
29163776 TAGACAT-GTCTTACACTGG
65 CAGACATGGTCTTACACTGG
29163795 TACACAAATT
Statistics
Matches: 430, Mismatches: 56, Indels: 50
0.80 0.10 0.09
Matches are distributed among these distances:
138 36 0.08
139 3 0.01
140 42 0.10
141 19 0.04
142 55 0.13
143 189 0.44
144 30 0.07
145 20 0.05
146 9 0.02
147 14 0.03
148 13 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (146 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATACTCGAGCTGATGCCATGTCCC
AGACATGGTCTTACACTGGCTATCATCATAGAGGCCGATGCCATGTCCCAAACATGGTCTTACAC
TAGCACACCGTCTTAA
Found at i:29172161 original size:26 final size:26
Alignment explanation
Indices: 29172124--29172259 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
29172114 TGATACAAAT
* *
29172124 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
29172150 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
29172176 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
29172202 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
29172228 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
29172254 TGATAA
1 TGATAA
29172260 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:29174288 original size:136 final size:137
Alignment explanation
Indices: 29174043--29174328 Score: 538
Period size: 136 Copynumber: 2.1 Consensus size: 137
29174033 GAGTAGTCTC
29174043 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
29174108 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
29174173 ACTGTTA
131 ACTGTTA
*
29174180 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
29174244 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
29174309 ACTGTTA
131 ACTGTTA
**
29174316 CCTGAATGGGCTT
1 CCCAAATGGGCTT
29174329 AGGCCCAATA
Statistics
Matches: 146, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 126 0.86
137 20 0.14
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:29178123 original size:26 final size:26
Alignment explanation
Indices: 29178086--29178219 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
29178076 TGATACAAAT
*
29178086 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
29178112 TGATAATGGGTTAGGTAAAT-TT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
29178136 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
29178162 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
29178188 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
29178214 TGATAA
1 TGATAA
29178220 GAATTCATGT
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
24 21 0.21
25 4 0.04
26 77 0.75
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:29178145 original size:50 final size:51
Alignment explanation
Indices: 29178086--29178219 Score: 234
Period size: 50 Copynumber: 2.6 Consensus size: 51
29178076 TGATACAAAT
29178086 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAA-TTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAAGTTTCA
29178136 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAA-GTTTCA
* *
29178188 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
29178220 GAATTCATGT
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
50 45 0.56
52 35 0.44
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (51 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAAGTTTCA
Found at i:29180242 original size:136 final size:137
Alignment explanation
Indices: 29179997--29180271 Score: 516
Period size: 136 Copynumber: 2.0 Consensus size: 137
29179987 GAGTAGTCTC
29179997 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
29180062 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
*
29180127 ACTGTTA
131 ACTATTA
*
29180134 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
29180198 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
29180263 ACTATTA
131 ACTATTA
29180270 CC
1 CC
29180272 TGAATAGGCT
Statistics
Matches: 135, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 115 0.85
137 20 0.15
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
ACTATTA
Found at i:29185750 original size:27 final size:26
Alignment explanation
Indices: 29185688--29185799 Score: 107
Period size: 27 Copynumber: 4.1 Consensus size: 26
29185678 AGCATGGCTG
* ** *
29185688 CCAGAACAGATAATGCGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
29185714 TCAGATACAGACAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
29185742 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
29185769 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
29185797 CCA
1 CCA
29185800 AGACGCTTCC
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
26 5 0.07
27 37 0.52
28 29 0.41
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:29187268 original size:24 final size:24
Alignment explanation
Indices: 29187236--29187309 Score: 121
Period size: 24 Copynumber: 3.1 Consensus size: 24
29187226 ATACAGTTCA
29187236 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
*
29187260 CCCTGATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
* *
29187284 CCCTTATCAGCTCCTAAATCTTCT
1 CCCTAATCAGCTCCTAAATCCTCT
29187308 CC
1 CC
29187310 AGACAGACTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.22, C:0.42, G:0.05, T:0.31
Consensus pattern (24 bp):
CCCTAATCAGCTCCTAAATCCTCT
Found at i:29194442 original size:28 final size:28
Alignment explanation
Indices: 29194410--29194508 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
29194400 GCAATAAGCC
*
29194410 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
29194438 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
29194466 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
29194495 CGCACACTTAGTGC
1 CGCACACTTAGTGC
29194509 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:29202123 original size:28 final size:28
Alignment explanation
Indices: 29202091--29202189 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
29202081 GCAATAAGCC
*
29202091 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
29202119 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
29202147 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
29202176 CGCACACTTAGTGC
1 CGCACACTTAGTGC
29202190 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:29206932 original size:28 final size:28
Alignment explanation
Indices: 29206882--29206994 Score: 83
Period size: 28 Copynumber: 4.1 Consensus size: 28
29206872 AGCATGGCTG
* * *
29206882 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGACATATGTGGCAGAGCCA
*
29206908 CCAGATATAGACA-ATCGTGGCAGAGCCA
1 CCAGATACAGACATAT-GTGGCAGAGCCA
* *
29206936 CCA-AAACAGATATATGTGGCAGAGCCA
1 CCAGATACAGACATATGTGGCAGAGCCA
* * * *
29206963 CCAGAT-CAAATAATTTGTGGCATAGCCA
1 CCAGATACAGA-CATATGTGGCAGAGCCA
29206991 CCAG
1 CCAG
29206995 GTCGCTTCCT
Statistics
Matches: 70, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
26 5 0.07
27 31 0.44
28 34 0.49
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (28 bp):
CCAGATACAGACATATGTGGCAGAGCCA
Found at i:29206960 original size:27 final size:28
Alignment explanation
Indices: 29206924--29206993 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
29206914 ATAGACAATC
*
29206924 GTGGCAGAGCCACCAAAACAGAT-ATAT
1 GTGGCAGAGCCACCAAAACAAATAATAT
* * *
29206951 GTGGCAGAGCCACCAGATCAAATAATTT
1 GTGGCAGAGCCACCAAAACAAATAATAT
*
29206979 GTGGCATAGCCACCA
1 GTGGCAGAGCCACCA
29206994 GGTCGCTTCC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 20 0.54
28 17 0.46
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (28 bp):
GTGGCAGAGCCACCAAAACAAATAATAT
Found at i:29208463 original size:24 final size:24
Alignment explanation
Indices: 29208431--29208503 Score: 119
Period size: 24 Copynumber: 3.0 Consensus size: 24
29208421 ACACAGTTCA
29208431 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
*
29208455 CCCTGATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
* *
29208479 CCCTTATCAGCTCCTAAATCTTCT
1 CCCTAATCAGCTCCTAAATCCTCT
29208503 C
1 C
29208504 TAGACAGACT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.22, C:0.41, G:0.05, T:0.32
Consensus pattern (24 bp):
CCCTAATCAGCTCCTAAATCCTCT
Found at i:29209599 original size:66 final size:66
Alignment explanation
Indices: 29209487--29209613 Score: 161
Period size: 66 Copynumber: 1.9 Consensus size: 66
29209477 GCTGTAGTTG
* *
29209487 GAGTTCATCATATTTTTCTACTTGCCTTTGCTTCCCTTGTTGCTGCCTCTGCTTTAAGTTGTTGC
1 GAGTTCATCATATTTTTCTA-TTGCCTTTGCTTCCCTCGTTGCTGCCTCCGCTTTAAGTTGTTGC
29209552 TA
65 TA
* *
29209554 GAGTTCATCATA-TTTTCT-TTGAGCTTCTGCTTCTCTCGATT-CTGCCTCCGCTTTAAGTTG
1 GAGTTCATCATATTTTTCTATTG-CCTT-TGCTTCCCTCG-TTGCTGCCTCCGCTTTAAGTTG
29209614 AGCAATTTGT
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
64 3 0.06
65 3 0.06
66 33 0.62
67 14 0.26
ACGTcount: A:0.13, C:0.24, G:0.17, T:0.46
Consensus pattern (66 bp):
GAGTTCATCATATTTTTCTATTGCCTTTGCTTCCCTCGTTGCTGCCTCCGCTTTAAGTTGTTGCT
A
Found at i:29213666 original size:20 final size:22
Alignment explanation
Indices: 29213632--29213671 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
29213622 TGTATTTTGT
29213632 AAAAATTTCTAAGTT-TCGAAA
1 AAAAATTTCTAAGTTATCGAAA
*
29213653 AAAAATTT-TGAGTTATCGA
1 AAAAATTTCTAAGTTATCGA
29213672 TTTAGTCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.35
Consensus pattern (22 bp):
AAAAATTTCTAAGTTATCGAAA
Found at i:29218729 original size:19 final size:19
Alignment explanation
Indices: 29218693--29218746 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
29218683 CCAAAATGGT
*
29218693 ATTGGGCCATTTTGGGCCGA
1 ATTGGGCC-TTGTGGGCCGA
*
29218713 ATTGGGCCTTGTGGGCCTA
1 ATTGGGCCTTGTGGGCCGA
*
29218732 A-TGGG-CTTGTAGGCC
1 ATTGGGCCTTGTGGGCC
29218747 TCACACGAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 9 0.29
18 4 0.13
19 10 0.32
20 8 0.26
ACGTcount: A:0.13, C:0.20, G:0.37, T:0.30
Consensus pattern (19 bp):
ATTGGGCCTTGTGGGCCGA
Found at i:29219328 original size:33 final size:32
Alignment explanation
Indices: 29219278--29219339 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
29219268 ATTGCACAGT
*
29219278 ATACTGATACTATAATGGGCTTAGGTCCCACTG
1 ATACTGATACTATAATGGGCTCAGG-CCCACTG
*
29219311 ATACTGTTACTGA-AATGGGCTCAGGCCCA
1 ATACTGATACT-ATAATGGGCTCAGGCCCA
29219340 GACTGCTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 4 0.15
33 21 0.81
34 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (32 bp):
ATACTGATACTATAATGGGCTCAGGCCCACTG
Found at i:29221472 original size:17 final size:18
Alignment explanation
Indices: 29221442--29221475 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
29221432 GTGTAGCTTA
29221442 CCTGTGTAGGCCCACATT
1 CCTGTGTAGGCCCACATT
29221460 CCTGTGT-GGCCCACAT
1 CCTGTGTAGGCCCACAT
29221476 GGCCCAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.15, C:0.35, G:0.24, T:0.26
Consensus pattern (18 bp):
CCTGTGTAGGCCCACATT
Found at i:29224171 original size:45 final size:42
Alignment explanation
Indices: 29224104--29224188 Score: 109
Period size: 45 Copynumber: 2.0 Consensus size: 42
29224094 CTCTATTATT
**
29224104 ACTTTTCATATATTATTTTATATATATTATAAGTATTATTTTAAA
1 ACTTTTCATATATTATCATATAT-TATTAT--GTATTATTTTAAA
29224149 ACTTTTC-TACTATTATCATATATTATTATGTATTATTTTA
1 ACTTTTCATA-TATTATCATATATTATTATGTATTATTTTA
29224189 CATTTATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
42 11 0.30
44 8 0.22
45 18 0.49
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56
Consensus pattern (42 bp):
ACTTTTCATATATTATCATATATTATTATGTATTATTTTAAA
Found at i:29231838 original size:127 final size:126
Alignment explanation
Indices: 29231428--29231826 Score: 559
Period size: 127 Copynumber: 3.1 Consensus size: 126
29231418 TGAAGATAGC
* * * * *
29231428 AGATCTTATCTCTTTGTATTCGACGGGGAG-AAGATCAAAGACATAGCATATTTGACCTTCATCG
1 AGATCTTATCTCTCTGTATTCGACAGGGAGCAA-ATCGAAGACATAGCAGATCTGACCTTCATCG
* * *
29231492 GGGCAGATCCAAGATGGTGGATCTTATCTCTCTATAATAGGTGGGAAGTAGATCTAAGATGAC
65 GGGCAGATCCAAGATGGTGGATCTTATCTCTCTATAATAGGAGGG-AGTAGATCAAAGATGAT
* *
29231555 AGATCTTATCTCTCTGTATTCGACAGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATCGG
1 AGATCTTATCTCTCTGTATTCGACAGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCATCGG
* * *
29231620 GGCAGATCTAAGATGGTGGATCTTATCTCTCTATAATAAGAGGGGAGTAGATCCAAGATGAT
66 GGCAGATCCAAGATGGTGGATCTTATCTCTCTATAATAGGA-GGGAGTAGATCAAAGATGAT
* *
29231682 AGATCTTATCTCTCTGTATTCGACAGGGAGCAAATCGAAGACATCGCAGATCTGACCTTCAACGG
1 AGATCTTATCTCTCTGTATTCGACAGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCATCGG
* *** *
29231747 GACAGATCCAAGATGACAGATCTTATCTCTCTGTAAT-GGACGAGGAGTAGATCAAAGATGAT
66 GGCAGATCCAAGATGGTGGATCTTATCTCTCTATAATAGGA-G-GGAGTAGATCAAAGATGAT
29231809 AGATCTTATCTCTCTGTA
1 AGATCTTATCTCTCTGTA
29231827 ATGGGCGGGG
Statistics
Matches: 244, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
126 3 0.01
127 237 0.97
128 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (126 bp):
AGATCTTATCTCTCTGTATTCGACAGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCATCGG
GGCAGATCCAAGATGGTGGATCTTATCTCTCTATAATAGGAGGGAGTAGATCAAAGATGAT
Found at i:29231926 original size:127 final size:127
Alignment explanation
Indices: 29231795--29232148 Score: 537
Period size: 127 Copynumber: 2.8 Consensus size: 127
29231785 GACGAGGAGT
* * **
29231795 AGATCAAAGATGATAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGATTGATCT
1 AGATCCAAGATGATAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCT
*
29231860 TATCTCTCTGTATTCGACGGGGAGTTGATCGAAGACATAGCAGATCTGACCTTCATCGGGGC
66 TATCTCTCTGTATTCGACGGGGAGTAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGC
*
29231922 AGATCCAAGATGATAGATCTTATCTCTCTGTAATAGGTGGGGAGTAGATCCAAGATGACAGATCT
1 AGATCCAAGATGATAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCT
* * * *
29231987 TATCTCTCTGTATTTGACAGGGAGCAGATCGAAGACATAGCTGATCTGACCTTCATCGGGGC
66 TATCTCTCTGTATTCGACGGGGAGTAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGC
* * * * *
29232049 AGATCCAAGATGACAGATCTTATCTCTCCGTAATAGACAGGGAGTAGATCAAAGATGACAGATCT
1 AGATCCAAGATGATAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCT
* * * *
29232114 TATCTCTCTGTAATGGACGGAGAGTAGATCTAAGA
66 TATCTCTCTGTATTCGACGGGGAGTAGATCGAAGA
29232149 TGACAGATCT
Statistics
Matches: 205, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
127 205 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (127 bp):
AGATCCAAGATGATAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCT
TATCTCTCTGTATTCGACGGGGAGTAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGC
Found at i:29231996 original size:172 final size:172
Alignment explanation
Indices: 29231638--29231998 Score: 553
Period size: 172 Copynumber: 2.1 Consensus size: 172
29231628 TAAGATGGTG
*
29231638 GATCTTATCTCTCTATAATAAGAGGGGAGTAGATCCAAGATGATAGATCTTATCTCTCTGTATTC
1 GATCTTATCTCTCTGTAATAAGAGGGGAGTAGATCCAAGATGATAGATCTTATCTCTCTGTATTC
*
29231703 GACAGGGAGCAAATCGAAGACATCGCAGATCTGACCTTCAACGGGACAGATCCAAGATGACAGAT
66 GACAGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAACGGGACAGATCCAAGATGACAGAT
*
29231768 CTTATCTCTCTGTAATGGACGAGGAGTAGATCAAAGATGATA
131 CTTATCTCTCTGTAATGGACGAGGAGTAGATCAAAGATGACA
** * *
29231810 GATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGATTGATCTTATCTCTCTGTATTC
1 GATCTTATCTCTCTGTAATAAGAGGGGAGTAGATCCAAGATGATAGATCTTATCTCTCTGTATTC
* *** * * *
29231875 GACGGGGAGTTGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAGATCCAAGATGATAGAT
66 GACAGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAACGGGACAGATCCAAGATGACAGAT
* * *
29231940 CTTATCTCTCTGTAATAGG-TGGGGAGTAGATCCAAGATGACA
131 CTTATCTCTCTGTAAT-GGACGAGGAGTAGATCAAAGATGACA
29231982 GATCTTATCTCTCTGTA
1 GATCTTATCTCTCTGTA
29231999 TTTGACAGGG
Statistics
Matches: 171, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
172 169 0.99
173 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (172 bp):
GATCTTATCTCTCTGTAATAAGAGGGGAGTAGATCCAAGATGATAGATCTTATCTCTCTGTATTC
GACAGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAACGGGACAGATCCAAGATGACAGAT
CTTATCTCTCTGTAATGGACGAGGAGTAGATCAAAGATGACA
Found at i:29232054 original size:299 final size:299
Alignment explanation
Indices: 29231496--29232297 Score: 1230
Period size: 299 Copynumber: 2.7 Consensus size: 299
29231486 TCATCGGGGC
* * * * * * *
29231496 AGATCCAAGATGGTGGATCTTATCTCTCTATAATAGGTGGGAAGTAGATCTAAGATGACAGATCT
1 AGATCAAAGATGATAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCTAAGATGACAGATCT
* * *
29231561 TATCTCTCTGTATTCGACAGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATCGGGGCAGA
66 TATCTCTCTGTATTCGACGGGGAGTAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAGA
* * * *
29231626 TCTAAGATGGTGGATCTTATCTCTCTATAATAAGAGGGGAGTAGATCCAAGATGATAGATCTTAT
131 TCCAAGATGGTGGATCTTATCTCTCTGTAATAGGAGGGGAGTAGATCCAAGATGACAGATCTTAT
*
29231691 CTCTCTGTATTCGACAGGGAGCAAATCGAAGACATCGCAGATCTGACCTTCAACGGGACAGATCC
196 CTCTCTGTATTCGACAGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAACGGGACAGATCC
* *
29231756 AAGATGACAGATCTTATCTCTCTGTAATGGAC-GAGGAGT
261 AAGATGACAGATCTTATCTCTCCGTAATAGACAG-GGAGT
* **
29231795 AGATCAAAGATGATAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGATTGATCT
1 AGATCAAAGATGATAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCTAAGATGACAGATCT
*
29231860 TATCTCTCTGTATTCGACGGGGAGTTGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAGA
66 TATCTCTCTGTATTCGACGGGGAGTAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAGA
* * *
29231925 TCCAAGATGATAGATCTTATCTCTCTGTAATAGGTGGGGAGTAGATCCAAGATGACAGATCTTAT
131 TCCAAGATGGTGGATCTTATCTCTCTGTAATAGGAGGGGAGTAGATCCAAGATGACAGATCTTAT
* * * * *
29231990 CTCTCTGTATTTGACAGGGAGCAGATCGAAGACATAGCTGATCTGACCTTCATCGGGGCAGATCC
196 CTCTCTGTATTCGACAGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAACGGGACAGATCC
29232055 AAGATGACAGATCTTATCTCTCCGTAATAGACAGGGAGT
261 AAGATGACAGATCTTATCTCTCCGTAATAGACAGGGAGT
* * *
29232094 AGATCAAAGATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCTAAGATGACAGATCT
1 AGATCAAAGATGATAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCTAAGATGACAGATCT
* * * *
29232159 TATCTCTCTGTATTCGACGGGGAGTAGATCGAAAACGTAGCAGCTCTGACCTTCATCGGGACAGA
66 TATCTCTCTGTATTCGACGGGGAGTAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAGA
*
29232224 TCCAAGATGGCGGATCTTATCTCTCTGTAAT-GGACGGGGAGTAGATCCAAGATGACAGATCTTA
131 TCCAAGATGGTGGATCTTATCTCTCTGTAATAGGA-GGGGAGTAGATCCAAGATGACAGATCTTA
*
29232288 TCTCTTTGTA
195 TCTCTCTGTA
29232298 ATGGACGAAG
Statistics
Matches: 456, Mismatches: 45, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
298 2 0.00
299 453 0.99
300 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (299 bp):
AGATCAAAGATGATAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCTAAGATGACAGATCT
TATCTCTCTGTATTCGACGGGGAGTAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAGA
TCCAAGATGGTGGATCTTATCTCTCTGTAATAGGAGGGGAGTAGATCCAAGATGACAGATCTTAT
CTCTCTGTATTCGACAGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAACGGGACAGATCC
AAGATGACAGATCTTATCTCTCCGTAATAGACAGGGAGT
Found at i:29232106 original size:172 final size:171
Alignment explanation
Indices: 29231922--29232405 Score: 709
Period size: 172 Copynumber: 2.8 Consensus size: 171
29231912 TCATCGGGGC
* * *
29231922 AGATCCAAGATGATAGATCTTATCTCTCTGTAATAGG-TGGGGAGTAGATCCAAGATGACAGATC
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAAT-GGACGGAGAGTAGATCCAAGATGACAGATC
* * *
29231986 TTATCTCTCTGTATTTGACAGGGAGCAGATCGAAGACATAGCTGATCTGACCTTCATCGGGGCAG
65 TTATCTCTCTGTATTCGAC-GGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATCGGGGCAG
29232051 ATCCAAGATGACAGATCTTATCTCTCCGTAATAGACAGGGAGT
129 ATCCAAGATGACAGATCTTATCTCTCCGTAATAGACAGGGAGT
* *
29232094 AGATCAAAGATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCTAAGATGACAGATCT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCCAAGATGACAGATCT
* * * *
29232159 TATCTCTCTGTATTCGACGGGGAGTAGATCGAAAACGTAGCAGCTCTGACCTTCATCGGGACAGA
66 TATCTCTCTGTATTCGAC-GGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATCGGGGCAGA
* * * * *
29232224 TCCAAGATGGCGGATCTTATCTCTCTGTAATGGACGGGGAGT
130 TCCAAGATGACAGATCTTATCTCTCCGTAATAGACAGGGAGT
* *
29232266 AGATCCAAGATGACAGATCTTATCTCTTTGTAATGGACGAAGAGTAGATCCAAGATGACAGATCT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCCAAGATGACAGATCT
* ***
29232331 TATCTCTCTGTATTCGACGAGGAGCAGATCGAAAACATAGCAGATCTGACTTTCATCAAAGCAGA
66 TATCTCTCTGTATTCGACG-GGAGCAGATCGAAAACATAGCAGATCTGACCTTCATCGGGGCAGA
*
29232396 TCCAGGATGA
130 TCCAAGATGA
29232406 TTTGGCATCT
Statistics
Matches: 278, Mismatches: 32, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
171 3 0.01
172 275 0.99
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (171 bp):
AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCCAAGATGACAGATCT
TATCTCTCTGTATTCGACGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATCGGGGCAGAT
CCAAGATGACAGATCTTATCTCTCCGTAATAGACAGGGAGT
Found at i:29232769 original size:27 final size:28
Alignment explanation
Indices: 29232709--29232762 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
29232699 AAATGCCTAA
* * *
29232709 AACCCAGCTAAATTACCCATTAACCCGT
1 AACCCAACTAAACTACCCATAAACCCGT
29232737 AACCCAACTAAACTACCCA-AAACCCG
1 AACCCAACTAAACTACCCATAAACCCG
29232763 ATACCCATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 6 0.26
28 17 0.74
ACGTcount: A:0.41, C:0.39, G:0.06, T:0.15
Consensus pattern (28 bp):
AACCCAACTAAACTACCCATAAACCCGT
Found at i:29236114 original size:40 final size:40
Alignment explanation
Indices: 29236059--29236140 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
29236049 ACAATGCATC
29236059 AATATATATCACAAACTCTTTACCCAATTCTGGTTGTACT
1 AATATATATCACAAACTCTTTACCCAATTCTGGTTGTACT
*
29236099 AATATATATCACAAACTCTTTACCCAATTTTGGTTGTACT
1 AATATATATCACAAACTCTTTACCCAATTCTGGTTGTACT
29236139 AA
1 AA
29236141 CACTGGAGCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (40 bp):
AATATATATCACAAACTCTTTACCCAATTCTGGTTGTACT
Found at i:29240289 original size:31 final size:31
Alignment explanation
Indices: 29240253--29240315 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
29240243 TCTACAAAGT
29240253 AAGCTTTAAAAGCTTAGTAAGCCATATACAA
1 AAGCTTTAAAAGCTTAGTAAGCCATATACAA
*
29240284 AAGCTTTAAAAGGTTAGTAAGCCATATACAA
1 AAGCTTTAAAAGCTTAGTAAGCCATATACAA
29240315 A
1 A
29240316 TAAAGTCATC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.25
Consensus pattern (31 bp):
AAGCTTTAAAAGCTTAGTAAGCCATATACAA
Found at i:29248801 original size:28 final size:28
Alignment explanation
Indices: 29248769--29248913 Score: 168
Period size: 29 Copynumber: 5.1 Consensus size: 28
29248759 CACATACATG
** *
29248769 CATATGGCCCACCAGGCCCAATCTCTTT
1 CATATGGCCCATTAGGCCCAATCACTTT
* *
29248797 CATATGGCCCATTAGAACCAAATCACATTT
1 CATATGGCCCATTAG-GCCCAATCAC-TTT
29248827 -ATATGGCCCATTAGGCCCAAATCACATTT
1 CATATGGCCCATTAGGCCC-AATCAC-TTT
* *
29248856 -ATATGGCCCATTAGGCCAAAATCACATT
1 CATATGGCCCATTAGGCC-CAATCACTTT
29248884 CATATGGCCCATTAGGCCCAATCACTTT
1 CATATGGCCCATTAGGCCCAATCACTTT
29248912 CA
1 CA
29248914 CAGTCATGTT
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
28 27 0.27
29 71 0.70
30 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.26
Consensus pattern (28 bp):
CATATGGCCCATTAGGCCCAATCACTTT
Found at i:29248882 original size:58 final size:57
Alignment explanation
Indices: 29248764--29248913 Score: 205
Period size: 58 Copynumber: 2.6 Consensus size: 57
29248754 AAGTCCACAT
* ** *
29248764 ACATGCATATGGCCCACCAGGCCCAATCTCTTTCATATGGCCCATTAGAACCAAATC
1 ACATTCATATGGCCCATTAGGCCCAATCACTTTCATATGGCCCATTAGAACCAAATC
* *
29248821 ACATTTATATGGCCCATTAGGCCCAAATCACATTT-ATATGGCCCATTAG-GCCAAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATCAC-TTTCATATGGCCCATTAGAACC-AAATC
29248879 ACATTCATATGGCCCATTAGGCCCAATCACTTTCA
1 ACATTCATATGGCCCATTAGGCCCAATCACTTTCA
29248914 CAGTCATGTT
Statistics
Matches: 82, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
56 3 0.04
57 29 0.35
58 47 0.57
59 3 0.04
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.26
Consensus pattern (57 bp):
ACATTCATATGGCCCATTAGGCCCAATCACTTTCATATGGCCCATTAGAACCAAATC
Found at i:29251744 original size:34 final size:34
Alignment explanation
Indices: 29251706--29251773 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
29251696 GGTCAATGCA
29251706 TGAATGCCTATGTTTTAATTCAAGACATATCAAT
1 TGAATGCCTATGTTTTAATTCAAGACATATCAAT
29251740 TGAATGCCTATGTTTTAATTCAAGACATATCAAT
1 TGAATGCCTATGTTTTAATTCAAGACATATCAAT
29251774 AAAAATCATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (34 bp):
TGAATGCCTATGTTTTAATTCAAGACATATCAAT
Found at i:29258459 original size:6 final size:6
Alignment explanation
Indices: 29258443--29258484 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
29258433 TCTCTTGCAA
*
29258443 TTTAA- TTTAAT TTTAAT TTTAAT TTT-AT TTATAAA TTTAAT T
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TT-TAAT TTTAAT T
29258485 GTTCTTTCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
5 9 0.28
6 20 0.62
7 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
TTTAAT
Found at i:29261302 original size:71 final size:71
Alignment explanation
Indices: 29261218--29261381 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
29261208 CGATTTGTCT
29261218 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
29261283 CTTTCA
66 CTTTCA
29261289 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
29261354 CTTTCA
66 CTTTCA
29261360 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
29261382 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:29261419 original size:71 final size:70
Alignment explanation
Indices: 29261218--29261415 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
29261208 CGATTTGTCT
* * * *
29261218 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
29261283 CTTTCA
65 CTTTCA
* * * *
29261289 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
29261354 CTTTCA
65 CTTTCA
* *
29261360 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
29261416 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:29268768 original size:71 final size:71
Alignment explanation
Indices: 29268684--29268847 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
29268674 CGATTTGTCT
29268684 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
29268749 CTTTCA
66 CTTTCA
29268755 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
29268820 CTTTCA
66 CTTTCA
29268826 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
29268848 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:29268885 original size:71 final size:70
Alignment explanation
Indices: 29268684--29268881 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
29268674 CGATTTGTCT
* * * *
29268684 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
29268749 CTTTCA
65 CTTTCA
* * * *
29268755 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
29268820 CTTTCA
65 CTTTCA
* *
29268826 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
29268882 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:29290436 original size:20 final size:20
Alignment explanation
Indices: 29290411--29290458 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
29290401 CGTATCATAC
29290411 GCCCGTGTGGTACGTGGCCG
1 GCCCGTGTGGTACGTGGCCG
29290431 GCCCGTGTGGTACGTGGCCG
1 GCCCGTGTGGTACGTGGCCG
*
29290451 GCCTGTGT
1 GCCCGTGT
29290459 TTGTCGCGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.04, C:0.29, G:0.44, T:0.23
Consensus pattern (20 bp):
GCCCGTGTGGTACGTGGCCG
Found at i:29305533 original size:28 final size:28
Alignment explanation
Indices: 29305468--29305568 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
29305458 ATAGTGAATC
*
29305468 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
29305497 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
29305525 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
29305555 CGCACACTTAGTGC
1 CGCACACTTAGTGC
29305569 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:29308164 original size:3 final size:3
Alignment explanation
Indices: 29308156--29308426 Score: 150
Period size: 3 Copynumber: 91.0 Consensus size: 3
29308146 GTCCTTTTCA
29308156 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * **
29308204 TAT TAT TAT TAT TAT TAT CAT TAT T-T TGT TGA- TAT TGC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT
* * *
29308248 AAT TA- TAT T-T TAT TTT TA- TAT T-T TATT TATT TAT TCAT T-T TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TA-T TAT T-AT TAT TAT
* * * * * *
29308291 TAT TAAT TCAT TGATT TAT CAT TAT TAA CA- CAT TCT TAT TAT TTT TAT
1 TAT T-AT T-AT T-A-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
29308339 TA- AAG TAT TAT TAT TAT TATT TGT TGT T-C TAT TTT TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
29308383 TAT TAT CAT TCT GAA CAT TAT TAT TAT TAA TA- TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
29308427 GATTGCTATT
Statistics
Matches: 208, Mismatches: 43, Indels: 34
0.73 0.15 0.12
Matches are distributed among these distances:
2 19 0.09
3 167 0.80
4 20 0.10
5 2 0.01
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:29308282 original size:13 final size:13
Alignment explanation
Indices: 29308250--29308275 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29308240 GCTATTATAA
29308250 TTATATTTTATTT
1 TTATATTTTATTT
29308263 TTATATTTTATTT
1 TTATATTTTATTT
29308276 ATTTATTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTATATTTTATTT
Found at i:29308712 original size:3 final size:3
Alignment explanation
Indices: 29308706--29308817 Score: 52
Period size: 3 Copynumber: 36.3 Consensus size: 3
29308696 CTATAGTCAC
* * *
29308706 TAT TAT TAT TAT TAT TACC TGT TAT TAT T-T TCAT CAT TAT TAT T-T
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT T-AT TAT TAT TAT TAT
* * * *
29308751 ATACCT TAT TAT TAT TACT TAT TTT TAT TGT TAT CTAA TA- TAC TAT
1 -TA--T TAT TAT TAT TA-T TAT TAT TAT TAT TAT -TAT TAT TAT TAT
* *
29308797 TAT TAT CAC TA- TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
29308818 TTACTAGTGT
Statistics
Matches: 83, Mismatches: 15, Indels: 22
0.69 0.12 0.18
Matches are distributed among these distances:
2 7 0.08
3 66 0.80
4 7 0.08
5 2 0.02
6 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:29311180 original size:10 final size:10
Alignment explanation
Indices: 29311165--29311214 Score: 61
Period size: 10 Copynumber: 5.2 Consensus size: 10
29311155 ATGTCTTCCT
29311165 TTCATTTGCA
1 TTCATTTGCA
29311175 TTCATTT-CA
1 TTCATTTGCA
*
29311184 TGCATTTGCA
1 TTCATTTGCA
29311194 TTGCA-TTGCA
1 TT-CATTTGCA
29311204 TT-ATTTGCA
1 TTCATTTGCA
29311213 TT
1 TT
29311215 AGACTTTCCC
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
8 1 0.03
9 15 0.43
10 17 0.49
11 2 0.06
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (10 bp):
TTCATTTGCA
Found at i:29311191 original size:19 final size:19
Alignment explanation
Indices: 29311166--29311214 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
29311156 TGTCTTCCTT
*
29311166 TCATTTGCATT-CATTTCA
1 TCATTTGCATTGCATTGCA
29311184 TGCATTTGCATTGCATTGCA
1 T-CATTTGCATTGCATTGCA
*
29311204 TTATTTGCATT
1 TCATTTGCATT
29311215 AGACTTTCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 1 0.04
19 19 0.70
20 7 0.26
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.49
Consensus pattern (19 bp):
TCATTTGCATTGCATTGCA
Found at i:29315059 original size:52 final size:53
Alignment explanation
Indices: 29314997--29315099 Score: 145
Period size: 53 Copynumber: 2.0 Consensus size: 53
29314987 ATGTCCGATA
* * *
29314997 AATTTTCTTCTTATTGTA-TTGCTACCTTTGATTAACATATTCATTTTGAGTT
1 AATTTCCTTCTTATTGCATTTGCAACCTTTGATTAACATATTCATTTTGAGTT
* **
29315049 AATTTCCTTCTTATTGCATTTGCAATCTTTGATTAATTTATTCATTTTGAG
1 AATTTCCTTCTTATTGCATTTGCAACCTTTGATTAACATATTCATTTTGAG
29315100 CTATGTTCCC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
52 16 0.36
53 28 0.64
ACGTcount: A:0.23, C:0.14, G:0.10, T:0.53
Consensus pattern (53 bp):
AATTTCCTTCTTATTGCATTTGCAACCTTTGATTAACATATTCATTTTGAGTT
Found at i:29315910 original size:66 final size:66
Alignment explanation
Indices: 29315804--29315935 Score: 246
Period size: 66 Copynumber: 2.0 Consensus size: 66
29315794 ATTCATATGT
*
29315804 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
29315869 A
66 A
*
29315870 CATTCATAACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
29315935 A
66 A
29315936 TAAGCACAGA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (66 bp):
CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
A
Found at i:29316047 original size:43 final size:43
Alignment explanation
Indices: 29315999--29316839 Score: 507
Period size: 43 Copynumber: 19.5 Consensus size: 43
29315989 ATTCACAAGC
*
29315999 CTTAACCCTCTAAGCAGTAGGGAAACAGACTGAATTGACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACTGAATTGACAGAT
* * * **
29316042 CTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGA-TGGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACTGAA-TTGACAGAT
* * * *
29316085 CTTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGAT
1 C-TTAACCCCCTAAGCAGTAGGGAAACAGACTGAATTGACAGAT
* * **
29316129 CTTAACCCCCTAAGCAGTAGGGAAACAGA-TCGAAGATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACT-GAA-TTGACAGAT
* * * * *
29316172 CTTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAATTTACAAAT
1 C-TTAACCCCCTAAGCAGTAGGGAAACAGACTGAATTGACAGAT
* * ** *
29316216 CTTAACCCCCTAAGCAATAGGGAAACAGA-TCGAAGATGATGGGT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACT-GAA-TTGACAGAT
* * * * *
29316260 TTTAA-CCCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACTGAATTGACAGAT
* * * * **
29316302 CTTAACCCCCTAAACAGTAGGGAAATAGA-TCGAAGGTGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACT-GAA-TTGACAGAT
* * * *
29316345 CTTTATCCCCCTAAGCAGTAGGGTAACA-AGCCGAATTTACAGA-
1 C-TTAACCCCCTAAGCAGTAGGGAAACAGA-CTGAATTGACAGAT
* * * ** * *
29316388 CTTAAACCTCTAAGCAGTAGGGTAACAGGTTGAATTCACA-AGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACTGAATTGACAGA-T
* * * * * *
29316431 CTTATCTCCCTAAGCAGTAGGGTAATAGGCTGAATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACTGAATTGACAGAT
** **
29316474 CTTAACCCCCTAAGCAGTAGGGAAACAGA-TCGAAGGCGACAGGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACT-GAA-TTGACAGAT
* * * *
29316518 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACTGAATTGACAGAT
* *
29316561 CTTAA-CCCCTAAGCAGTAGGGAAAAAGA-TCGAAGATGACA-AGT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACT-GAA-TTGACAGA-T
* * * * * *
29316604 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACTGAATTGACAGAT
* ** ** *
29316647 CTTAACCCCCTAAGCAGTAGGGAAATAGA-TCGAAGGCGATGGAC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACT-GAA-TTGACAGAT
* * * * *
29316691 CTTAAACCCCTAAACAGTAGGGTAACA-AGCTAAATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGA-CTGAATTGACAGAT
* * ** * * **
29316734 CTTATCTCCCTAAGCAGTAGTGG-AGTAGA-TCAA-AGACGAAGGGC
1 CTTAACCCCCTAAGCAGTAG-GGAAACAGACTGAATTGAC--A-GAT
* *
29316778 CTTAAACCCCTAAGCAGTAGGGTAACAGACTGAATTG-CAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACTGAATTGACAGAT
* *
29316820 CTTATCTCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAG
29316840 TAGAGTAGAT
Statistics
Matches: 593, Mismatches: 162, Indels: 87
0.70 0.19 0.10
Matches are distributed among these distances:
41 4 0.01
42 89 0.15
43 281 0.47
44 210 0.35
45 8 0.01
46 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGAAACAGACTGAATTGACAGAT
Found at i:29316105 original size:87 final size:86
Alignment explanation
Indices: 29315997--29316891 Score: 1003
Period size: 87 Copynumber: 10.3 Consensus size: 86
29315987 GAATTCACAA
* * * *
29315997 GCCTTAACCCTCTAAGCAGTAGGGAAACAGACTGAATTGACAGATCTTAACCCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
*
29316062 GGAAACAGATTGAAGATGATG
66 GGAAACAGATCGAAGATGATG
*
29316083 GCCTTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTA
1 GCC-TTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTA
29316148 GGGAAACAGATCGAAGATGATGG
65 GGGAAACAGATCGAAGATGAT-G
* * * *
29316171 GCTTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCCCTAAGCAATAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
29316236 GGAAACAGATCGAAGATGATGG
66 GGAAACAGATCGAAGATGAT-G
** * *
29316258 GTTTTAA-CCCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAACAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
* *
29316322 GGAAATAGATCGAAGGTGATGG
66 GGAAACAGATCGAAGATGAT-G
* * * * * *
29316344 GCTTTATCCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA-CTTAAACCTCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
* * * * * **
29316408 GGTAACAGGTTGAA-TTCACAA
66 GGAAACAGATCGAAGATGA-TG
* * *
29316429 GCCTTATCTCCCTAAGCAGTAGGGTAATAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
** *
29316494 GGAAACAGATCGAAGGCGACAG
66 GGAAACAGATCGAAGATGA-TG
*
29316516 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAA-CCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
* **
29316580 GGAAAAAGATCGAAGATGACAA
66 GGAAACAGATCGAAGATGA-TG
* * * *
29316602 GTCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAATCTTAACCCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
* **
29316667 GGAAATAGATCGAAGGCGATG
66 GGAAACAGATCGAAGATGATG
* * * * * *
29316688 GACCTTAAACCCCTAAACAGTAGGGTAACAAGCTAAATTTACAGATCTTATCTCCCTAAGCAGTA
1 G-CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTA
** * * *
29316753 GTGG-AGTAGATCAAAGACGAAGG
65 G-GGAAACAGATCGAAGATG-ATG
* * * * *
29316776 GCCTTAAACCCCTAAGCAGTAGGGTAACAGACTGAA-TTGCAGATCTTATCTCCCTAAGCAGTA-
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
* ** * *
29316839 GTAGAGTAGATCGAAGACGAAG
66 GGA-AACAGATCGAAGATGATG
* * *
29316861 GATCTTAACCCCCTAAGCAGTAAGGAAACAG
1 G-CCTTAACCCCCTAAGCAGTAGGGTAACAG
29316892 ATCAGAGGTG
Statistics
Matches: 713, Mismatches: 83, Indels: 26
0.87 0.10 0.03
Matches are distributed among these distances:
84 1 0.00
85 44 0.06
86 283 0.40
87 377 0.53
88 8 0.01
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (86 bp):
GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
GGAAACAGATCGAAGATGATG
Found at i:29316344 original size:173 final size:173
Alignment explanation
Indices: 29315997--29316891 Score: 1046
Period size: 173 Copynumber: 5.2 Consensus size: 173
29315987 GAATTCACAA
* * * *
29315997 GCCTTAACCCTCTAAGCAGTAGGGAAACAGACTGAATTGACAGATCTTAACCCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
* * * *
29316062 GGAAACAGATTGAAGATGATGGCCTTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAATTTACAG
66 GGAAACAGATCGAAGATGACGGGCTTTAA-CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAG
**
29316127 ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGG
130 ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGG
* * * *
29316171 GCTTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCCCTAAGCAATAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
* * *
29316236 GGAAACAGATCGAAGATGATGGGTTTTAACCCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGA
66 GGAAACAGATCGAAGATGACGGGCTTTAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA
* * *
29316301 TCTTAACCCCCTAAACAGTAGGGAAATAGATCGAAGGTGATGG
131 TCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGG
* * * * * *
29316344 GCTTTATCCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA-CTTAAACCTCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
* * * * * ** * * *
29316408 GGTAACAGGTTGAA-TTCACAAGCCTTATCTCCCTAAGCAGTAGGGTAATAGGCTGAATTTACAG
66 GGAAACAGATCGAAGATGACGGGCTTTAAC-CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAG
**
29316472 ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGACAG
130 ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGG
*
29316516 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAA-CCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
* * * * * *
29316580 GGAAAAAGATCGAAGATGACAAGTCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAA
66 GGAAACAGATCGAAGATGAC-GGGCTTTAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAG
*
29316645 ATCTTAACCCCCTAAGCAGTAGGGAAATAGATCGAAGGCGATGG
130 ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGG
* * * * * * *
29316689 ACCTTAAACCCCTAAACAGTAGGGTAACAAGCTAAATTTACAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
** * * * * * *
29316754 TGG-AGTAGATCAAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGACTGAA-TTGCA
66 -GGAAACAGATCGAAGATGACGGG-CTTTAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACA
* * * ** * *
29316817 GATCTTATCTCCCTAAGCAGTA-GTAGAGTAGATCGAAGACGAAGG
129 GATCTTAACCCCCTAAGCAGTAGGGA-AACAGATCGAAGGCGATGG
** * *
29316862 ATCTTAACCCCCTAAGCAGTAAGGAAACAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAG
29316892 ATCAGAGGTG
Statistics
Matches: 621, Mismatches: 92, Indels: 17
0.85 0.13 0.02
Matches are distributed among these distances:
171 7 0.01
172 163 0.26
173 304 0.49
174 145 0.23
175 2 0.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (173 bp):
GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
GGAAACAGATCGAAGATGACGGGCTTTAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA
TCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGG
Found at i:29316729 original size:345 final size:346
Alignment explanation
Indices: 29316031--29316891 Score: 1015
Period size: 345 Copynumber: 2.5 Consensus size: 346
29316021 AAACAGACTG
* * * * * * * ** * *
29316031 AATTGACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGA-TGGCCTTTAACCCC
1 AATTTACAGATCTTAAACCTCTAAGCAGTAGGGTAACAGGTTGAA-TTCACAAGCC-TTATCTCC
*
29316095 CTAAGTAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATC
64 CTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATC
* ** * * *
29316160 GAAGATGATGGGCTTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCC
129 GAAGACGACAGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCC
* *** * *
29316225 CTAAGCAATAGGGAAACAGATCGAAGATGATGGGTTTTAACCCCTAAGTAGTAGGGTAACAGGCT
194 CTAAGCAATAGGGAAAAAGATCGAAGATGACAAGTTTAAACCCCTAAGCAGTAGGGTAACAGGCT
* * * * * **
29316290 GAATTTACAGATCTTAACCCCCTAAACAGTAGGGAAATAGATCGAAGGTGATGGGCTTTATCCCC
259 AAATTTACAAATCTTAACCCCCTAAACAGTAGGGAAATAGATCGAAGGCGATGGACCTTAAACCC
* *
29316355 CTAAGCAGTAGGGTAACAAGCCG
324 CTAAACAGTAGGGTAACAAGCCA
29316378 AATTTACAGA-CTTAAACCTCTAAGCAGTAGGGTAACAGGTTGAATTCACAAGCCTTATCTCCCT
1 AATTTACAGATCTTAAACCTCTAAGCAGTAGGGTAACAGGTTGAATTCACAAGCCTTATCTCCCT
*
29316442 AAGCAGTAGGGTAATAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGA
66 AAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGA
* *
29316507 AGGCGACAGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAA-CCCCT
131 AGACGACAGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCCCT
*
29316571 AAGCAGTAGGGAAAAAGATCGAAGATGACAAGTCTTAAACCCCTAAGCAGTAGGGTAACAGGCTA
196 AAGCAATAGGGAAAAAGATCGAAGATGACAAGT-TTAAACCCCTAAGCAGTAGGGTAACAGGCTA
*
29316636 AATTTACAAATCTTAACCCCCTAAGCAGTAGGGAAATAGATCGAAGGCGATGGACCTTAAACCCC
260 AATTTACAAATCTTAACCCCCTAAACAGTAGGGAAATAGATCGAAGGCGATGGACCTTAAACCCC
*
29316701 TAAACAGTAGGGTAACAAGCTA
325 TAAACAGTAGGGTAACAAGCCA
* * ** * * ** *
29316723 AATTTACAGATCTT-ATCTCCCTAAGCAGTAGTGG-AGTA-GATCAA-AGACGAAGGGCCTTAAA
1 AATTTACAGATCTTAAAC-CTCTAAGCAGTAG-GGTAACAGGTTGAATTCAC-AA--GCCTT-AT
* * * * * **
29316784 C-CCCTAAGCAGTAGGGTAACAGACTGAA-TTGCAGATCTTATCTCCCTAAGCAGTA-GTAGAGT
60 CTCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGA-AAC
* * * *
29316846 AGATCGAAGACGA-AGGATCTTAACCCCCTAAGCAGTAAGGAAACAG
124 AGATCGAAGACGACAGG-CCTTAAACCCCTAAGCAGTAGGGTAACAG
29316892 ATCAGAGGTG
Statistics
Matches: 442, Mismatches: 61, Indels: 23
0.84 0.12 0.04
Matches are distributed among these distances:
344 35 0.08
345 252 0.57
346 112 0.25
347 41 0.09
348 2 0.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (346 bp):
AATTTACAGATCTTAAACCTCTAAGCAGTAGGGTAACAGGTTGAATTCACAAGCCTTATCTCCCT
AAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGA
AGACGACAGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCCCT
AAGCAATAGGGAAAAAGATCGAAGATGACAAGTTTAAACCCCTAAGCAGTAGGGTAACAGGCTAA
ATTTACAAATCTTAACCCCCTAAACAGTAGGGAAATAGATCGAAGGCGATGGACCTTAAACCCCT
AAACAGTAGGGTAACAAGCCA
Found at i:29318487 original size:3 final size:3
Alignment explanation
Indices: 29318479--29318786 Score: 159
Period size: 3 Copynumber: 104.0 Consensus size: 3
29318469 GTCCTTTTCA
29318479 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
29318527 TAT TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT CAT CAT CAT CAT CAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * ** ** *
29318574 CAT TAT T-T TGT TGC TAT TGC TAT TAT AAT TA- TAT T-T TATT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TA-T
* * * * *
29318618 TAT TCAT T-T TAT TAT TAA T-T TAT TGATT TAT CAT TAT TAA CA- CAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT T-A-T TAT TAT TAT TAT TAT TAT
* * * * * * * *
29318663 TCT TAT TAT TTT TAT TA- AAG TAT TAT TTT TATT TGT TGT T-C TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
* * * * * * * *
29318707 TTT TAT TAC TAT TAT TAT CAT TCT GAA CAT TAT TAT TAT TAA TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** *
29318754 TAT TAT TAT TAT TCT TAT TGC TAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
29318787 CTCTTGTATG
Statistics
Matches: 238, Mismatches: 52, Indels: 30
0.74 0.16 0.09
Matches are distributed among these distances:
2 17 0.07
3 205 0.86
4 14 0.06
5 2 0.01
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:29318632 original size:20 final size:20
Alignment explanation
Indices: 29318609--29318657 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
29318599 TAATTATATT
*
29318609 TTATTTATTTATTCATTTTA
1 TTATTAATTTATTCATTTTA
*
29318629 TTATTAATTTATTGATTTATCA
1 TTATTAATTTATTCATTT-T-A
29318651 TTATTAA
1 TTATTAA
29318658 CACATTCTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 16 0.64
21 1 0.04
22 8 0.32
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (20 bp):
TTATTAATTTATTCATTTTA
Found at i:29320955 original size:5 final size:5
Alignment explanation
Indices: 29320945--29321044 Score: 55
Period size: 6 Copynumber: 19.0 Consensus size: 5
29320935 ATGTCTTTTG
* *
29320945 AAATA AAAT- -AATA AAATTG AAATGA AAATAA AAATCA AAAGAA AAATAA
1 AAATA AAATA AAATA AAA-TA AAAT-A AAAT-A AAAT-A AAA-TA AAAT-A
* *
29320994 AAATA AAAT- AAATA AAATA AGAATAA AAATA AGAAT- AATTA AAATT
1 AAATA AAATA AAATA AAATA A-AAT-A AAATA A-AATA AAATA AAATA
29321040 AAATA
1 AAATA
29321045 GGAGGATTCA
Statistics
Matches: 74, Mismatches: 10, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
3 3 0.04
4 6 0.08
5 28 0.38
6 35 0.47
7 2 0.03
ACGTcount: A:0.73, C:0.01, G:0.05, T:0.21
Consensus pattern (5 bp):
AAATA
Found at i:29320973 original size:6 final size:6
Alignment explanation
Indices: 29320964--29321031 Score: 64
Period size: 6 Copynumber: 11.0 Consensus size: 6
29320954 AATAAAATTG
* * * *
29320964 AAATGA AAATAA AAATCA AAAGAA AAATAA AAATAA AATAAATA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AA-ATA-A AAATAA
* *
29321014 GAATAA AAATAA GAATAA
1 AAATAA AAATAA AAATAA
29321032 TTAAAATTAA
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
6 43 0.86
7 4 0.08
8 3 0.06
ACGTcount: A:0.76, C:0.01, G:0.06, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:29321037 original size:15 final size:15
Alignment explanation
Indices: 29320983--29321038 Score: 57
Period size: 14 Copynumber: 4.0 Consensus size: 15
29320973 TAAAAATCAA
* *
29320983 AAGAAAAATAAAAAT
1 AAGAATAATTAAAAT
*
29320998 AA-AATAAATAAAAT
1 AAGAATAATTAAAAT
29321012 AAGAAT-A--AAAAT
1 AAGAATAATTAAAAT
29321024 AAGAATAATTAAAAT
1 AAGAATAATTAAAAT
29321039 TAAATAGGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
12 11 0.32
13 1 0.03
14 12 0.35
15 10 0.29
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (15 bp):
AAGAATAATTAAAAT
Found at i:29321044 original size:26 final size:25
Alignment explanation
Indices: 29320945--29321044 Score: 89
Period size: 26 Copynumber: 4.0 Consensus size: 25
29320935 ATGTCTTTTG
* *
29320945 AAATAAAAT-AATAAAATTGAAATGA
1 AAATAAAATAAATAAAA-TAAAATAA
* *
29320970 AAATAAAAATCAA-AAGA-AAAATAA
1 AAAT-AAAATAAATAAAATAAAATAA
29320994 AAATAAAATAAATAAAATAAGAATAA
1 AAATAAAATAAATAAAATAA-AATAA
* *
29321020 AAATAAGAATAATTAAAATTAAATA
1 AAATAA-AATAAATAAAATAAAATA
29321045 GGAGGATTCA
Statistics
Matches: 62, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
23 7 0.11
24 12 0.19
25 6 0.10
26 23 0.37
27 14 0.23
ACGTcount: A:0.73, C:0.01, G:0.05, T:0.21
Consensus pattern (25 bp):
AAATAAAATAAATAAAATAAAATAA
Found at i:29326420 original size:13 final size:13
Alignment explanation
Indices: 29326398--29326430 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
29326388 AAGGATTTGT
29326398 TTAT-TAAACTAA
1 TTATCTAAACTAA
29326410 TTATCTAAACTAA
1 TTATCTAAACTAA
*
29326423 TTAACTAA
1 TTATCTAA
29326431 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:29327481 original size:20 final size:20
Alignment explanation
Indices: 29327456--29327493 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
29327446 TCGATTTGGT
*
29327456 TCGTTTTGTCCCTTTTTAGC
1 TCGTTTTGGCCCTTTTTAGC
*
29327476 TCGTTTTGGCTCTTTTTA
1 TCGTTTTGGCCCTTTTTA
29327494 ACTCTTGGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.05, C:0.21, G:0.16, T:0.58
Consensus pattern (20 bp):
TCGTTTTGGCCCTTTTTAGC
Found at i:29332372 original size:29 final size:29
Alignment explanation
Indices: 29332337--29332421 Score: 127
Period size: 29 Copynumber: 3.0 Consensus size: 29
29332327 GGGATGTTAC
*
29332337 ATGGCCCATTAGGCCCAAATCACATTTAA
1 ATGGCCCATTAGGCCCAAATCACATTCAA
* *
29332366 ATGGCCCATTTGGCCCAAATCACATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTCAA
*
29332395 ATGGCCCATTAGGCCC-AATCACTTTCA
1 ATGGCCCATTAGGCCCAAATCACATTCA
29332422 TATTCATGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 10 0.20
29 41 0.80
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTCAA
Found at i:29338129 original size:20 final size:19
Alignment explanation
Indices: 29338089--29338129 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
29338079 GTCCCCTGTA
*
29338089 TTTTGTAAAATTTTCTAAG
1 TTTTGTAAAATTTCCTAAG
*
29338108 TTTTGTAAAAATTTCCTGAG
1 TTTTGT-AAAATTTCCTAAG
29338128 TT
1 TT
29338130 ATCGGTTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.29, C:0.07, G:0.12, T:0.51
Consensus pattern (19 bp):
TTTTGTAAAATTTCCTAAG
Found at i:29340998 original size:43 final size:43
Alignment explanation
Indices: 29340951--29341056 Score: 187
Period size: 43 Copynumber: 2.5 Consensus size: 43
29340941 AAAACAATAG
29340951 TGTAAGTTATTATAATCATTAACTTTAAATGTTTAAATGTTTA
1 TGTAAGTTATTATAATCATTAACTTTAAATGTTTAAATGTTTA
* *
29340994 TGTAAGTTATGATAATCATTTACTTTAAATGTTTAAATGTTTA
1 TGTAAGTTATTATAATCATTAACTTTAAATGTTTAAATGTTTA
29341037 TGTAAGTTA-TATAATCATTA
1 TGTAAGTTATTATAATCATTA
29341057 TTCTGAAATA
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 9 0.15
43 50 0.85
ACGTcount: A:0.37, C:0.05, G:0.10, T:0.48
Consensus pattern (43 bp):
TGTAAGTTATTATAATCATTAACTTTAAATGTTTAAATGTTTA
Found at i:29341123 original size:59 final size:59
Alignment explanation
Indices: 29341053--29341331 Score: 340
Period size: 55 Copynumber: 4.9 Consensus size: 59
29341043 TTATATAATC
* * * *
29341053 ATTATTCTGAAATATGATTATTTATTTAGTTAATCGAAAATTAATTAATTATTCATAAA
1 ATTATTATGAAATATGATTATTTAATTAATTAATCAAAAATTAATTAATTATTCATAAA
* *
29341112 ATTATTATGAAATATGATTA--T--TTAATTAATCAAAAATTAAATAAATATTCATAAA
1 ATTATTATGAAATATGATTATTTAATTAATTAATCAAAAATTAATTAATTATTCATAAA
* * ** * *
29341167 ATTATTATGGAATATGATTATTTATTTAATTAA-C--TGA-TAATTGATTATTCATAGA
1 ATTATTATGAAATATGATTATTTAATTAATTAATCAAAAATTAATTAATTATTCATAAA
* * * *
29341222 ATTATTATAAAATATGGTTATTTAATAAATTAATCAAAAATTAATTAATTATTCATAGA
1 ATTATTATGAAATATGATTATTTAATTAATTAATCAAAAATTAATTAATTATTCATAAA
* *
29341281 ATTGTTATGAAATATGATTATTTAATTAATTAATCAAAAATGAATTAATTA
1 ATTATTATGAAATATGATTATTTAATTAATTAATCAAAAATTAATTAATTA
29341332 GGGTTGCAAA
Statistics
Matches: 187, Mismatches: 25, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
55 91 0.49
56 2 0.01
57 2 0.01
58 2 0.01
59 90 0.48
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.44
Consensus pattern (59 bp):
ATTATTATGAAATATGATTATTTAATTAATTAATCAAAAATTAATTAATTATTCATAAA
Found at i:29341181 original size:114 final size:117
Alignment explanation
Indices: 29341053--29341331 Score: 358
Period size: 114 Copynumber: 2.4 Consensus size: 117
29341043 TTATATAATC
* *
29341053 ATTATTCTGAAATATGATTATTTATTTAGTTAATCGAAAATTAATTAATTATTCATAAAATTATT
1 ATTATTATGAAATATGATTATTTATTTAATTAATCGAAAATTAATTAATTATTCATAAAATTATT
*
29341118 ATGAAATATGATTA-TT-T-AATTAATCAAAAATTAAATAAATATTCATAAA
66 ATAAAATATGATTATTTATAAATTAATCAAAAATTAAATAAATATTCATAAA
* * *
29341167 ATTATTATGGAATATGATTATTTATTTAATTAA-CTG---A-TAATTGATTATTCATAGAATTAT
1 ATTATTATGAAATATGATTATTTATTTAATTAATC-GAAAATTAATTAATTATTCATAAAATTAT
* * * *
29341227 TATAAAATATGGTTATTTAATAAATTAATCAAAAATTAATTAATTATTCATAGA
65 TATAAAATATGATTATTT-ATAAATTAATCAAAAATTAAATAAATATTCATAAA
* * * *
29341281 ATTGTTATGAAATATGATTATTTAATTAATTAATCAAAAATGAATTAATTA
1 ATTATTATGAAATATGATTATTTATTTAATTAATCGAAAATTAATTAATTA
29341332 GGGTTGCAAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
110 34 0.24
111 3 0.02
113 2 0.01
114 90 0.65
115 1 0.01
117 1 0.01
118 8 0.06
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.44
Consensus pattern (117 bp):
ATTATTATGAAATATGATTATTTATTTAATTAATCGAAAATTAATTAATTATTCATAAAATTATT
ATAAAATATGATTATTTATAAATTAATCAAAAATTAAATAAATATTCATAAA
Found at i:29341476 original size:22 final size:21
Alignment explanation
Indices: 29341449--29341501 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
29341439 ATCAGCCTAA
* *
29341449 ATATAAATTAAATTAGAAAAC
1 ATATAAATTAAATAAAAAAAC
**
29341470 TATATAAATTCTATAAAAAAAC
1 -ATATAAATTAAATAAAAAAAC
29341492 ATATAAATTA
1 ATATAAATTA
29341502 TAAAAATAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (21 bp):
ATATAAATTAAATAAAAAAAC
Found at i:29341503 original size:19 final size:22
Alignment explanation
Indices: 29341465--29341507 Score: 65
Period size: 19 Copynumber: 2.1 Consensus size: 22
29341455 ATTAAATTAG
29341465 AAAACTATATAAATTCTATAAA
1 AAAACTATATAAATTCTATAAA
29341487 AAAAC-ATATAAA-T-TATAAA
1 AAAACTATATAAATTCTATAAA
29341506 AA
1 AA
29341508 TAAAAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 1 0.05
21 7 0.33
22 5 0.24
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (22 bp):
AAAACTATATAAATTCTATAAA
Found at i:29341595 original size:12 final size:11
Alignment explanation
Indices: 29341574--29341612 Score: 55
Period size: 10 Copynumber: 3.7 Consensus size: 11
29341564 ATGTAAAGAA
29341574 ATATAAAATAT
1 ATATAAAATAT
29341585 ATATAAAA-AT
1 ATATAAAATAT
*
29341595 ATATAAAATTT
1 ATATAAAATAT
29341606 AT-TAAAA
1 ATATAAAA
29341613 GTTAAATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 15 0.58
11 11 0.42
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
ATATAAAATAT
Found at i:29341598 original size:21 final size:20
Alignment explanation
Indices: 29341574--29341612 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
29341564 ATGTAAAGAA
29341574 ATATAAAATATATATAAAAAT
1 ATATAAAATATAT-TAAAAAT
*
29341595 ATATAAAATTTATTAAAA
1 ATATAAAATATATTAAAA
29341613 GTTAAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
ATATAAAATATATTAAAAAT
Found at i:29342974 original size:25 final size:25
Alignment explanation
Indices: 29342911--29342974 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 25
29342901 AAACTTACAT
*
29342911 AGCGATGCAGCAAAGGGCTGCCGAC
1 AGCGATGCAGCAGAGGGCTGCCGAC
* * * **
29342936 AGAGAGGCACCAGAGGGCTGTTGAC
1 AGCGATGCAGCAGAGGGCTGCCGAC
*
29342961 GGCGATGCAGCAGA
1 AGCGATGCAGCAGA
29342975 CGTTGGGGAA
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.28, C:0.23, G:0.39, T:0.09
Consensus pattern (25 bp):
AGCGATGCAGCAGAGGGCTGCCGAC
Found at i:29343259 original size:76 final size:76
Alignment explanation
Indices: 29342980--29343260 Score: 209
Period size: 76 Copynumber: 3.7 Consensus size: 76
29342970 GCAGACGTTG
* * * *
29342980 GGGAAAAGATTTAGGGATTTCAGGGAAGGGTGGAACTAATTTGGGGAAAA--AAAGTTG-GG-GA
1 GGGAAAA-AATTAGGAATTTCAGGG-AGGG-GGAACTGATTTGGGGAAAATGAAA--TGCGGAAA
* * *
29343041 AAAATAAAGGGAATTA
61 AAAAGAAAGGGATTTC
* * * * *
29343057 GGGAAAAAGTTAAGG-ATTTCAAGGAAAGGGAGAACTGATTTGGGGAAAATAAAATGGGGAAAAA
1 GGGAAAAAATT-AGGAATTTC-AGG-GAGGGGGAACTGATTTGGGGAAAATGAAATGCGGAAAAA
29343121 AAGAAAGGGATTTC
63 AAGAAAGGGATTTC
* * * * * * *
29343135 GGGAAAAAATTAGGAATTTCGGGGAGGGGGAATTAAATTGGGGGAAATGAATTGCGG-AAAAAGG
1 GGGAAAAAATTAGGAATTTCAGGGAGGGGGAACTGATTTGGGGAAAATGAAATGCGGAAAAAAAG
*
29343199 GAAGGG--TTC
66 AAAGGGATTTC
* *
29343208 TGGGAAAAATACTTAGGGATTTTAGGGAGGGGGAACTGATTTGGGGAAAATGA
1 -GGGAAAAA-A-TTAGGAATTTCAGGGAGGGGGAACTGATTTGGGGAAAATGA
29343261 CCAAGGCATT
Statistics
Matches: 165, Mismatches: 28, Indels: 23
0.76 0.13 0.11
Matches are distributed among these distances:
73 3 0.02
74 8 0.05
75 12 0.07
76 86 0.52
77 24 0.15
78 32 0.19
ACGTcount: A:0.40, C:0.04, G:0.36, T:0.20
Consensus pattern (76 bp):
GGGAAAAAATTAGGAATTTCAGGGAGGGGGAACTGATTTGGGGAAAATGAAATGCGGAAAAAAAG
AAAGGGATTTC
Found at i:29345662 original size:63 final size:63
Alignment explanation
Indices: 29345499--29345774 Score: 245
Period size: 63 Copynumber: 4.4 Consensus size: 63
29345489 TGCCACATGG
* * * * * *
29345499 CCTGGGCACATGCCCATGTACCTTGCCCATGTGATTTTTA-AGC-ACAAACAATGAGTTACATGA
1 CCTGGGCACACGCCCGTGT-CCCTGGCCATGTGATTTTTATA-CTACAAACAGTGAGTTACACGA
* * * * *
29345562 CCTGGGCACACGCCCATGTCCCTAGCCATATGGTTTTTATTCCT-CAAACAGTGAGTTACACGA
1 CCTGGGCACACGCCCGTGTCCCTGGCCATGTGATTTTTA-TACTACAAACAGTGAGTTACACGA
* * * * **
29345625 CCTGGGCACATGTCTGTGTCCCTGGCCTTGTGATTTTTATACTACAAACAGTGTTTTACAC-A
1 CCTGGGCACACGCCCGTGTCCCTGGCCATGTGATTTTTATACTACAAACAGTGAGTTACACGA
* * * * * * * * *
29345687 GCATAGGCACATGCCCGTGTCCCTGGCCGTGTGATTTTTATACTACAAAAAGTTAGTTAAATGG
1 -CCTGGGCACACGCCCGTGTCCCTGGCCATGTGATTTTTATACTACAAACAGTGAGTTACACGA
*
29345751 CCTGGGCACACGTCCGTGTCCCTG
1 CCTGGGCACACGCCCGTGTCCCTG
29345775 ACTGTGTGAA
Statistics
Matches: 171, Mismatches: 36, Indels: 12
0.78 0.16 0.05
Matches are distributed among these distances:
62 19 0.11
63 152 0.89
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (63 bp):
CCTGGGCACACGCCCGTGTCCCTGGCCATGTGATTTTTATACTACAAACAGTGAGTTACACGA
Found at i:29352202 original size:24 final size:22
Alignment explanation
Indices: 29352144--29352204 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 22
29352134 TTTTATAAAC
29352144 TTTTTATA-TTTTTAATTTTAA
1 TTTTTATATTTTTTAATTTTAA
* *
29352165 TTTTAAT-TTATTTTAATCTTTTAG
1 TTTTTATATT-TTTTAA--TTTTAA
29352189 TTTTTATATTTTTTAA
1 TTTTTATATTTTTTAA
29352205 ATTATTTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 7 0.22
22 6 0.19
24 17 0.53
25 2 0.06
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTTTATATTTTTTAATTTTAA
Found at i:29352870 original size:21 final size:20
Alignment explanation
Indices: 29352832--29352875 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
29352822 AGGTGCTAGA
29352832 TTAAATTTAGTTTTTTAATAT
1 TTAAATTTAGTTTTTTAAT-T
*
29352853 TTAAATTT-TTTTTGTTAATT
1 TTAAATTTAGTTTT-TTAATT
29352873 TTA
1 TTA
29352876 TTTTTATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (20 bp):
TTAAATTTAGTTTTTTAATT
Found at i:29352931 original size:31 final size:31
Alignment explanation
Indices: 29352894--29352960 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
29352884 ATTATTTTAG
*
29352894 TTAAATTTGA-TATTTAA-TTTTTAAAAAAGAA
1 TTAAATTTAACTA-TTAATTTTTTAAAAAA-AA
29352925 TTAAATTTAACTATTAATTTTTTAAAAAAAA
1 TTAAATTTAACTATTAATTTTTTAAAAAAAA
29352956 TTAAA
1 TTAAA
29352961 ATGATTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
31 20 0.61
32 13 0.39
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (31 bp):
TTAAATTTAACTATTAATTTTTTAAAAAAAA
Found at i:29353577 original size:5 final size:5
Alignment explanation
Indices: 29353569--29353598 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
29353559 TTTGTTTTGT
29353569 TTTTA TTTTA TTTTA TTTTA TTTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTT
29353599 TATTGTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:29353584 original size:10 final size:11
Alignment explanation
Indices: 29353563--29353598 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
29353553 TTTGGATTTG
*
29353563 TTTTGTTTTTA
1 TTTTATTTTTA
29353574 TTTTA-TTTTA
1 TTTTATTTTTA
29353584 TTTTATTTTTA
1 TTTTATTTTTA
29353595 TTTT
1 TTTT
29353599 TATTGTATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:29353593 original size:6 final size:6
Alignment explanation
Indices: 29353563--29353602 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
29353553 TTTGGATTTG
*
29353563 TTTTGT TTTTA- TTTTA- TTTTA- TTTTAT TTTTAT TTTTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T
29353603 GTATGTACTC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 15 0.47
6 17 0.53
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:29356243 original size:18 final size:16
Alignment explanation
Indices: 29356208--29356256 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 16
29356198 TTAATTTTTA
29356208 TAATTT-TTTTATATTTT
1 TAATTTATTTTA-A-TTT
29356225 TAATTTTGATTTTAATTT
1 TAA-TTT-ATTTTAATTT
29356243 TAATTTATTTTAAT
1 TAATTTATTTTAAT
29356257 CTTTTTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
16 8 0.28
17 6 0.21
18 9 0.31
19 1 0.03
20 5 0.17
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (16 bp):
TAATTTATTTTAATTT
Found at i:29356288 original size:15 final size:14
Alignment explanation
Indices: 29356214--29356278 Score: 61
Period size: 14 Copynumber: 5.0 Consensus size: 14
29356204 TTTATAATTT
29356214 TTTTATATTTTTAA
1 TTTTATATTTTTAA
*
29356228 TTTT-GA-TTTTAA
1 TTTTATATTTTTAA
29356240 TTTTA-A--TTT-A
1 TTTTATATTTTTAA
*
29356250 TTTTAATCTTTTTAA
1 TTTT-ATATTTTTAA
29356265 TTTTATATTTTTAA
1 TTTTATATTTTTAA
29356279 ATTATTTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
10 5 0.12
11 4 0.10
12 11 0.26
13 1 0.02
14 16 0.38
15 5 0.12
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (14 bp):
TTTTATATTTTTAA
Found at i:29356824 original size:27 final size:27
Alignment explanation
Indices: 29356786--29356839 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
29356776 AATAAAATAT
29356786 TGGTCTTGCCTCTATTAGAGGCGGCAC
1 TGGTCTTGCCTCTATTAGAGGCGGCAC
29356813 TGGTCTTGCCTCTATTAGAGGCGGCAC
1 TGGTCTTGCCTCTATTAGAGGCGGCAC
29356840 CAGTTGATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.15, C:0.26, G:0.30, T:0.30
Consensus pattern (27 bp):
TGGTCTTGCCTCTATTAGAGGCGGCAC
Found at i:29356983 original size:16 final size:16
Alignment explanation
Indices: 29356955--29356987 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
29356945 AGAGGGAGGG
29356955 AGAAGAGAAGAAAAAA
1 AGAAGAGAAGAAAAAA
29356971 AGAA-AGAAGGAAAAAA
1 AGAAGAGAA-GAAAAAA
29356987 A
1 A
29356988 TTTCAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (16 bp):
AGAAGAGAAGAAAAAA
Found at i:29360150 original size:64 final size:63
Alignment explanation
Indices: 29360024--29360175 Score: 259
Period size: 64 Copynumber: 2.4 Consensus size: 63
29360014 AATTGAGCTT
* *
29360024 ATGTTGTAATGTATTTAATTTATGTAAAAAAAATTTATTGCAAAGTTTGTTCCAATTTGATTA
1 ATGTTGTAATGTATTTAATTTATATAAAAAAAATTTATTGCAAAGTTTGTTCCAATTAGATTA
* *
29360087 ATGTTGTCATGTATTTAATTTATATAAAAAAATTTATATTGCAAAGTTTGTTCCAATTAGATTA
1 ATGTTGTAATGTATTTAATTTATATAAAAAAAATT-TATTGCAAAGTTTGTTCCAATTAGATTA
29360151 ATGTTGTAATGTATTTAATTTATAT
1 ATGTTGTAATGTATTTAATTTATAT
29360176 TAGTAGACTA
Statistics
Matches: 83, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
63 32 0.39
64 51 0.61
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.47
Consensus pattern (63 bp):
ATGTTGTAATGTATTTAATTTATATAAAAAAAATTTATTGCAAAGTTTGTTCCAATTAGATTA
Found at i:29360316 original size:38 final size:37
Alignment explanation
Indices: 29360273--29360348 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 37
29360263 TCCACTTTTC
29360273 AAAGTTCCAATTAATCTAATTAAATATATCAAAAAAAT
1 AAAGTTCCAATTAATCTAATTAAATATAT-AAAAAAAT
29360311 AAAGTTCCAATTAATCTAATTAAATATATAAAAAAAT
1 AAAGTTCCAATTAATCTAATTAAATATATAAAAAAAT
29360348 A
1 A
29360349 CAAACTTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 9 0.24
38 29 0.76
ACGTcount: A:0.57, C:0.09, G:0.03, T:0.32
Consensus pattern (37 bp):
AAAGTTCCAATTAATCTAATTAAATATATAAAAAAAT
Found at i:29360918 original size:72 final size:71
Alignment explanation
Indices: 29360728--29360931 Score: 291
Period size: 72 Copynumber: 2.8 Consensus size: 71
29360718 CGAGCCTGAA
*
29360728 AAATAGTCATTGCCTGACAAATCCGGATGATAAGAAGTATCGGCCGAATATGAATGCGATGACAA
1 AAATAGTCATTGCCTGA-AAATCCGGATGATAAGAAGTATCGGCCGAATGTGAATGCGATGACAA
29360793 GCCCGGT
65 GCCCGGT
* * *
29360800 AAATAGTCATTGCCCGAAAAATCCGGATGATAAGAAGTATCGGCCGAATGTGAATGTGATGACGA
1 AAATAGTCATTGCCTG-AAAATCCGGATGATAAGAAGTATCGGCCGAATGTGAATGCGATGACAA
29360865 GCCCGGT
65 GCCCGGT
* * * ** *
29360872 AAATAGTCATTGCTCTGAAAATCCAGATGACAAGAAGTGTTAGCCGAATGTGAATACGAT
1 AAATAGTCATTGC-CTGAAAATCCGGATGATAAGAAGTATCGGCCGAATGTGAATGCGAT
29360932 TGCTTAGACT
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
72 115 0.97
73 3 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (71 bp):
AAATAGTCATTGCCTGAAAATCCGGATGATAAGAAGTATCGGCCGAATGTGAATGCGATGACAAG
CCCGGT
Found at i:29364083 original size:14 final size:14
Alignment explanation
Indices: 29364064--29364101 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
29364054 CATTTTGTCT
29364064 TTATTA-TATATTTA
1 TTATTATTATA-TTA
29364078 TTATTATTATATTA
1 TTATTATTATATTA
*
29364092 TTACTATTAT
1 TTATTATTAT
29364102 TCATATCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 18 0.82
15 4 0.18
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (14 bp):
TTATTATTATATTA
Found at i:29364086 original size:17 final size:17
Alignment explanation
Indices: 29364064--29364112 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
29364054 CATTTTGTCT
*
29364064 TTATTATA-TATTTATTA
1 TTATTATATTA-TTACTA
29364081 TTATTATATTATTACTA
1 TTATTATATTATTACTA
*
29364098 TTATTCATATCATTA
1 TTATT-ATATTATTA
29364113 TTAGTATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 18 0.64
18 10 0.36
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (17 bp):
TTATTATATTATTACTA
Found at i:29364856 original size:30 final size:29
Alignment explanation
Indices: 29364821--29364898 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 29
29364811 CATTATGTAA
* *
29364821 ATATTTTAATATCATATTATGTATATCTAT
1 ATATTTTAATAT-ATATTATATATATATAT
**
29364851 ATATTTTTCGTATATATTATATATATATAT
1 ATA-TTTTAATATATATTATATATATATAT
*
29364881 ATATATATATATATATAT
1 ATAT-TTTA-ATATATAT
29364899 GTTTTCAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
29 1 0.03
30 23 0.61
31 14 0.37
ACGTcount: A:0.40, C:0.04, G:0.03, T:0.54
Consensus pattern (29 bp):
ATATTTTAATATATATTATATATATATAT
Done.