Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 128 of 427
Found at i:34174241 original size:85 final size:84
Alignment explanation
Indices: 34174077--34174321 Score: 341
Period size: 85 Copynumber: 2.9 Consensus size: 84
34174067 CTATGTGTTA
* * * * *
34174077 TCGTGTAAGACCATGTTTGGGACATTGGCATCA-ACTTATGATTTACGTGTAAGACCACATCTGG
1 TCGTGTAAGACCCTGTCTGGGACAATGGCATCATA-TT-TGA-TTACATGTAAGACTACATCTGG
34174141 GACGTTGGCATCGTATTTGATT
63 GACGTTGGCATCGTATTTGATT
*
34174163 TCGTGTAAGACCCTGTCTGGGACAATGGCATCGATATTTGATTACATGTAAGACTACATCTAGGA
1 TCGTGTAAGACCCTGTCTGGGACAATGGCATC-ATATTTGATTACATGTAAGACTACATCTGGGA
34174228 CGTTGGCATCGTATTTGATT
65 CGTTGGCATCGTATTTGATT
* * *
34174248 TCGTGTAAGAGCCTGTCTGGGACAGTGGCATCAATATTTGATTACATGTAAGA-TCACGTCTGGG
1 TCGTGTAAGACCCTGTCTGGGACAATGGCATC-ATATTTGATTACATGTAAGACT-ACATCTGGG
34174312 ACGTTGGCAT
64 ACGTTGGCAT
34174322 TGTACGAGCT
Statistics
Matches: 145, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
84 1 0.01
85 108 0.74
86 32 0.22
87 3 0.02
88 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (84 bp):
TCGTGTAAGACCCTGTCTGGGACAATGGCATCATATTTGATTACATGTAAGACTACATCTGGGAC
GTTGGCATCGTATTTGATT
Found at i:34177114 original size:38 final size:37
Alignment explanation
Indices: 34177072--34177153 Score: 110
Period size: 38 Copynumber: 2.2 Consensus size: 37
34177062 GAAGTCAGCG
34177072 GGTCTTAACCCAGACATAGTCACCACATATGGTCATCT
1 GGTCTTAACCC-GACATAGTCACCACATATGGTCATCT
* ***
34177110 GGTCTTTAATCCGGGGTAGTCACCACATATGGTCATCT
1 GGTC-TTAACCCGACATAGTCACCACATATGGTCATCT
34177148 GGTCTT
1 GGTCTT
34177154 TAATCCCGGG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
37 2 0.05
38 31 0.79
39 6 0.15
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (37 bp):
GGTCTTAACCCGACATAGTCACCACATATGGTCATCT
Found at i:34177154 original size:38 final size:38
Alignment explanation
Indices: 34177088--34177164 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
34177078 AACCCAGACA
*
34177088 TAGTCACCACATATGGTCATCTGGTCTTTAATCCGGGG
1 TAGTCACCACATATGGTCATCTGGTCTTTAATCCCGGG
34177126 TAGTCACCACATATGGTCATCTGGTCTTTAATCCCGGG
1 TAGTCACCACATATGGTCATCTGGTCTTTAATCCCGGG
34177164 T
1 T
34177165 TTACATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (38 bp):
TAGTCACCACATATGGTCATCTGGTCTTTAATCCCGGG
Found at i:34177361 original size:46 final size:46
Alignment explanation
Indices: 34177308--34177398 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
34177298 TATATATACA
* * *
34177308 CATCTCATACA-TTTCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATT-TCACATTAACCATTCGGCTTTACCACATATC
* *
34177354 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATTTCACATTAACCATTCGGCTTTACCACATAT
34177399 ATACACTTCC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
46 37 0.95
47 2 0.05
ACGTcount: A:0.26, C:0.32, G:0.07, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAACCATTCGGCTTTACCACATATC
Found at i:34177441 original size:22 final size:22
Alignment explanation
Indices: 34177415--34177490 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
34177405 TTCCACGTTC
34177415 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
34177437 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
34177461 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
34177484 ATCACAT
1 ATCACAT
34177491 ATATACATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 13 0.32
23 11 0.27
24 11 0.27
25 6 0.15
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:34177463 original size:47 final size:47
Alignment explanation
Indices: 34177412--34177625 Score: 347
Period size: 47 Copynumber: 4.6 Consensus size: 47
34177402 CACTTCCACG
*
34177412 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
* * *
34177459 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
* *
34177506 TTCATCACATTGACCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
* *
34177553 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
*
34177600 TTCATCACATTTGCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
34177626 GCTCATATAT
Statistics
Matches: 156, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 156 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
Found at i:34177479 original size:94 final size:94
Alignment explanation
Indices: 34177378--34177625 Score: 354
Period size: 94 Copynumber: 2.6 Consensus size: 94
34177368 TTCGCATTAA
* * * *
34177378 CCATTCGGCTTTCCCACATATATACACT-TCCACGTTCATCACATTGGCCATTCGGCCTTATCAC
1 CCATTCGGCCTTACCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
*
34177442 ACATATGCATGTTCACATTCATCACATTGG
65 ACAAATGCATGTTCACATTCATCACATTGG
* * *
34177472 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGACCATTCGGTCTTATCACA
1 CCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
*
34177537 CAAATGCATGTTCACATTCATCACATTTG
66 CAAATGCATGTTCACATTCATCACATTGG
* * * * *
34177566 CCATTCGGCCTTAGCACACAAATGCATGTTCACATTCATCACATTTGCCATTCGGCCTTA
1 CCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTA
34177626 GCTCATATAT
Statistics
Matches: 137, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
93 1 0.01
94 136 0.99
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.32
Consensus pattern (94 bp):
CCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CAAATGCATGTTCACATTCATCACATTGG
Found at i:34177608 original size:23 final size:23
Alignment explanation
Indices: 34177535--34177608 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
34177525 GGTCTTATCA
34177535 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
** * *
34177558 CACATTTGCCA--TTCGGCCTTAGCA-
1 CACAAATG-CATGTTC-ACATT--CAT
34177582 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
34177605 CACA
1 CACA
34177609 TTTGCCATTC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 15 0.42
24 11 0.31
25 5 0.14
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (23 bp):
CACAAATGCATGTTCACATTCAT
Found at i:34177645 original size:47 final size:47
Alignment explanation
Indices: 34177412--34177656 Score: 330
Period size: 47 Copynumber: 5.2 Consensus size: 47
34177402 CACTTCCACG
* *
34177412 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTTGCCATTCGGCCTTATCACACATATACATGTTCACA
* *
34177459 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTTGCCATTCGGCCTTATCACACATATACATGTTCACA
* * *
34177506 TTCATCACA-TTGACCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTTG-CCATTCGGCCTTATCACACATATACATGTTCACA
* * *
34177553 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTTGCCATTCGGCCTTATCACACATATACATGTTCACA
* * * **
34177600 TTCATCACATTTGCCATTCGGCCTTAGCTCATATATACACATTCACA
1 TTCATCACATTTGCCATTCGGCCTTATCACACATATACATGTTCACA
*
34177647 TCCATCACAT
1 TTCATCACAT
34177657 AAAATCCTAA
Statistics
Matches: 180, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
46 2 0.01
47 175 0.97
48 3 0.02
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
TTCATCACATTTGCCATTCGGCCTTATCACACATATACATGTTCACA
Found at i:34186509 original size:27 final size:27
Alignment explanation
Indices: 34186475--34186544 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
34186465 CTGGGTTGTA
* *
34186475 AAAATTACCAAAATACCCTCGATTTAT
1 AAAATTACCAAAATACCCCCGACTTAT
* * *
34186502 GAAATTACCGAAATACCCCCGACTTGT
1 AAAATTACCAAAATACCCCCGACTTAT
34186529 AAAATTACCAAAATAC
1 AAAATTACCAAAATAC
34186545 TCCTGTAGGG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.44, C:0.24, G:0.07, T:0.24
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCCGACTTAT
Found at i:34187084 original size:32 final size:32
Alignment explanation
Indices: 34187048--34187120 Score: 83
Period size: 32 Copynumber: 2.3 Consensus size: 32
34187038 ATTACCGTCG
* *
34187048 CTGATGGCTATGTGTCAAACATAATACAGTTA
1 CTGATGGCTATGTGCCAAACATAATACAGCTA
* ** *
34187080 CTGATGGCTTTGTGCCAATTATAATACCGCTA
1 CTGATGGCTATGTGCCAAACATAATACAGCTA
*
34187112 CTGAAGGCT
1 CTGATGGCT
34187121 TAGAGCCGCA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (32 bp):
CTGATGGCTATGTGCCAAACATAATACAGCTA
Found at i:34188240 original size:27 final size:27
Alignment explanation
Indices: 34188198--34188255 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
34188188 ACCCACTAAT
34188198 TGATAAAATGAATGTTATGCCCCTATG
1 TGATAAAATGAATGTTATGCCCCTATG
*
34188225 TGATAAAATGATTGTTATGCCCCTATG
1 TGATAAAATGAATGTTATGCCCCTATG
34188252 TGAT
1 TGAT
34188256 GATGATTATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (27 bp):
TGATAAAATGAATGTTATGCCCCTATG
Found at i:34188267 original size:27 final size:27
Alignment explanation
Indices: 34188198--34188268 Score: 85
Period size: 27 Copynumber: 2.6 Consensus size: 27
34188188 ACCCACTAAT
34188198 TGATAAAATGA-ATGTTATGCCCCTATG
1 TGAT-AAATGATATGTTATGCCCCTATG
34188225 TGATAAAATGAT-TGTTATGCCCCTATG
1 TGAT-AAATGATATGTTATGCCCCTATG
*
34188252 TGAT-GATGATTATGTTA
1 TGATAAATGA-TATGTTA
34188269 AGCATGCCAT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
25 4 0.10
26 1 0.03
27 35 0.88
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
TGATAAATGATATGTTATGCCCCTATG
Found at i:34194959 original size:43 final size:43
Alignment explanation
Indices: 34194804--34194960 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
34194794 TGTGTTATTG
* * * *
34194804 TGTAAGACCACGTCTGGGACGTTGGTATGGA-ATTATGATGTACG
1 TGTAAGACCACGTCTGGGAAGTTGGCATCGATATT-TGAT-TACA
* * * **
34194848 TGTAAGACTATGTTTGGGAAGTTAGG-ATCG-TATTTGATTTTA
1 TGTAAGACCACGTCTGGGAAGTT-GGCATCGATATTTGATTACA
*
34194890 TCTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-AGTTGGCATCGATATTTGATTACA
*
34194933 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGAAGTTGGCAT
34194961 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 16, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
41 2 0.02
42 21 0.24
43 38 0.43
44 26 0.29
45 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGAAGTTGGCATCGATATTTGATTACA
Found at i:34202091 original size:40 final size:40
Alignment explanation
Indices: 34202036--34202257 Score: 367
Period size: 40 Copynumber: 5.6 Consensus size: 40
34202026 TATTCGAATG
*
34202036 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
34202076 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
34202116 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
34202156 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
34202196 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCCAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
34202236 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
34202258 TACTTGGGTT
Statistics
Matches: 172, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.08
40 155 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:34202509 original size:22 final size:21
Alignment explanation
Indices: 34202484--34202527 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
34202474 GAATATGCGT
34202484 ATATGCAA-CTATACATTTAGTC
1 ATATG-AACCTATAC-TTTAGTC
34202506 ATATGAACGCTATACTTTAGTC
1 ATATGAAC-CTATACTTTAGTC
34202528 GTAAATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 2 0.10
22 12 0.60
23 6 0.30
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATGAACCTATACTTTAGTC
Found at i:34205610 original size:40 final size:40
Alignment explanation
Indices: 34205502--34205711 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
34205492 CGGGATTTAA
* * * * *
34205502 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
34205542 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
34205582 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
34205622 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
34205662 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
34205702 CCGGATATAT
1 CCGGATATAT
34205712 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:34213748 original size:40 final size:40
Alignment explanation
Indices: 34213640--34213849 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
34213630 CGGGATTTAA
* * * * *
34213640 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
34213680 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
34213720 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
34213760 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
34213800 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
34213840 CCGGATATAT
1 CCGGATATAT
34213850 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:34216297 original size:80 final size:80
Alignment explanation
Indices: 34216213--34216361 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
34216203 TATGGTAACC
* * * *
34216213 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
34216277 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
34216293 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
34216358 CCGG
66 CCGG
34216362 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:34216303 original size:40 final size:38
Alignment explanation
Indices: 34216254--34216361 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
34216244 ATCACGATTT
*
34216254 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
34216294 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
34216334 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
34216362 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:34224348 original size:80 final size:80
Alignment explanation
Indices: 34224264--34224412 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
34224254 TATGGTAACC
* * * *
34224264 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
34224328 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
34224344 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
34224409 CCGG
66 CCGG
34224413 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:34224354 original size:40 final size:38
Alignment explanation
Indices: 34224305--34224412 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
34224295 ATCACGATTT
*
34224305 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
34224345 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
34224385 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
34224413 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:34226599 original size:27 final size:26
Alignment explanation
Indices: 34226557--34226671 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
34226547 TAGCATGGCT
* *
34226557 ACCAGAACAGATATTGTGACAGAGTC
1 ACCAGAACAGATATTGTGGCAGAGCC
*
34226583 ACCAGATACAGATATTGTGGCTGAGCC
1 ACCAGA-ACAGATATTGTGGCAGAGCC
*
34226610 ACCAGAACAGATAATTGTGGCATAGCC
1 ACCAGAACAGAT-ATTGTGGCAGAGCC
* *
34226637 ACCAAAACAGATATTTGTGGCATAGCC
1 ACCAGAACAGATA-TTGTGGCAGAGCC
34226664 ACCAGAAC
1 ACCAGAAC
34226672 GCTTCCTCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 13 0.16
27 66 0.84
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.19
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGGCAGAGCC
Found at i:34226617 original size:53 final size:54
Alignment explanation
Indices: 34226537--34226671 Score: 161
Period size: 54 Copynumber: 2.5 Consensus size: 54
34226527 GCTACACGCC
* * * * *
34226537 ACAGA-ATTTGTAGCATGGCTACCAGAACAGAT-ATTGTGACAGAGTCACCAGAT
1 ACAGATATTTGTGGCATAGCCACCAGAACAGATAATTGTGACAGAGCCACCA-AA
* *
34226590 ACAGATA-TTGTGGC-TGAGCCACCAGAACAGATAATTGTGGCATAGCCACCAAA
1 ACAGATATTTGTGGCAT-AGCCACCAGAACAGATAATTGTGACAGAGCCACCAAA
34226643 ACAGATATTTGTGGCATAGCCACCAGAAC
1 ACAGATATTTGTGGCATAGCCACCAGAAC
34226672 GCTTCCTCCA
Statistics
Matches: 70, Mismatches: 7, Indels: 9
0.81 0.08 0.10
Matches are distributed among these distances:
52 1 0.01
53 33 0.47
54 35 0.50
55 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (54 bp):
ACAGATATTTGTGGCATAGCCACCAGAACAGATAATTGTGACAGAGCCACCAAA
Found at i:34229882 original size:93 final size:93
Alignment explanation
Indices: 34229770--34229941 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
34229760 GCCCATAAGT
*
34229770 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34229835 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
34229863 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
34229928 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
34229942 AAATATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:34229937 original size:46 final size:46
Alignment explanation
Indices: 34229762--34229937 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
34229752 TGTAACCCGC
*
34229762 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
34229808 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
34229854 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
34229901 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
34229938 TGCCAAATAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 70 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:34232359 original size:15 final size:15
Alignment explanation
Indices: 34232286--34232354 Score: 77
Period size: 15 Copynumber: 4.7 Consensus size: 15
34232276 CAAAGATAAC
*
34232286 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
34232300 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
34232315 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
* * *
34232330 AAGAGATCCAGGATA
1 AAGAAACCCAGAATA
34232345 AAGAAACCCA
1 AAGAAACCCA
34232355 AGATATGATA
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
14 7 0.15
15 39 0.85
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:34235392 original size:93 final size:93
Alignment explanation
Indices: 34235280--34235451 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
34235270 GCCCATAAGT
* *
34235280 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
34235344 ACGAGTTCGGATGCCTAGTTACATCTCTC
65 ACGAGTTCGGATGCCTAGTTACATCTCTC
*
34235373 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34235438 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
34235452 CAAATATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 73 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:34235446 original size:46 final size:46
Alignment explanation
Indices: 34235272--34235447 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
34235262 TGTAACCCGC
* *
34235272 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
* *
34235318 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
34235364 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
34235411 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
34235448 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.61
47 33 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:34237923 original size:29 final size:28
Alignment explanation
Indices: 34237837--34237923 Score: 111
Period size: 28 Copynumber: 3.1 Consensus size: 28
34237827 CACATACCTG
* * * *
34237837 TATATGGCCCACTAGGCCCTATCCCTTT
1 TATATGGCCCATTAGGCCCAATCACATT
*
34237865 TATATGGCCCATTAAGCCCAATCACATT
1 TATATGGCCCATTAGGCCCAATCACATT
*
34237893 TATGTGGCCCATTAGGCCCCAATCACATT
1 TATATGGCCCATTAGG-CCCAATCACATT
34237922 TA
1 TA
34237924 CAGTCATGCT
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 37 0.73
29 14 0.27
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.30
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATCACATT
Found at i:34238163 original size:16 final size:16
Alignment explanation
Indices: 34238137--34238179 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
34238127 ATAGCAAAAC
* *
34238137 TTTCTGCTTTTCTGCA
1 TTTCGGCTTTTCGGCA
* *
34238153 TTTCGGGTTTTCGGTA
1 TTTCGGCTTTTCGGCA
34238169 TTTCGGCTTTT
1 TTTCGGCTTTT
34238180 GCCGATCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.05, C:0.19, G:0.21, T:0.56
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:34239421 original size:16 final size:16
Alignment explanation
Indices: 34239397--34239428 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
34239387 AAAATTGAGA
*
34239397 TTTCGGGATTTTTGGG
1 TTTCAGGATTTTTGGG
34239413 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
34239429 GCGTTACACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:34247231 original size:21 final size:22
Alignment explanation
Indices: 34247186--34247233 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
34247176 TAGACATACG
* **
34247186 TTAGAAACAATTAGGGACCAAA
1 TTAGAAACAATTAGGAAAAAAA
34247208 TTAGAAACAATT-GGAAAAAAA
1 TTAGAAACAATTAGGAAAAAAA
34247229 TTAGA
1 TTAGA
34247234 CTGTAAGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.54, C:0.08, G:0.17, T:0.21
Consensus pattern (22 bp):
TTAGAAACAATTAGGAAAAAAA
Found at i:34248087 original size:6 final size:6
Alignment explanation
Indices: 34248069--34248195 Score: 102
Period size: 6 Copynumber: 20.7 Consensus size: 6
34248059 AAGAAACATT
*
34248069 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
34248118 ATCAGA ATCA-A TATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA -ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* *
34248169 A-CAGA ATCAAA ATCAGA ATCAGT ATCA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA
34248196 AGTAACAGAA
Statistics
Matches: 99, Mismatches: 9, Indels: 26
0.74 0.07 0.19
Matches are distributed among these distances:
5 7 0.07
6 79 0.80
7 9 0.09
8 3 0.03
9 1 0.01
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:34248090 original size:18 final size:18
Alignment explanation
Indices: 34248069--34248195 Score: 102
Period size: 19 Copynumber: 6.9 Consensus size: 18
34248059 AAGAAACATT
34248069 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
34248087 ATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGA
*
34248104 GTGACAGAATCAGAATCAGA
1 AT--CAGAATCAGAATCAGA
34248124 ATCA-ATATCAGGTAA-CAGA
1 ATCAGA-ATCA-G-AATCAGA
* *
34248143 ATCAAAATCAGAATCAGT
1 ATCAGAATCAGAATCAGA
*
34248161 ATCAGGTAA-CAGAATCAAA
1 ATCA-G-AATCAGAATCAGA
*
34248180 ATCAGAATCAGTATCA
1 ATCAGAATCAGAATCA
34248196 AGTAACAGAA
Statistics
Matches: 90, Mismatches: 7, Indels: 24
0.74 0.06 0.20
Matches are distributed among these distances:
17 6 0.07
18 37 0.41
19 41 0.46
20 6 0.07
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.19
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:34248116 original size:31 final size:31
Alignment explanation
Indices: 34248078--34248251 Score: 258
Period size: 31 Copynumber: 5.5 Consensus size: 31
34248068 TATCAGAACT
* * *
34248078 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
34248109 AGAATCAGAATCAGAATCAATATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
34248140 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
34248171 AGAATCAAAATCAGAATCAGTATCAAGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
34248202 AGAATAAAAAATCAGCATCAGTATCAGGTAAC
1 AGAAT-CAAAATCAGAATCAGTATCAGGTAAC
34248234 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
34248252 GTGAATGCAA
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
31 92 0.71
32 38 0.29
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:34248206 original size:19 final size:19
Alignment explanation
Indices: 34248151--34248206 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
34248141 GAATCAAAAT
*
34248151 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAAGTAA
34248170 CAGAATCA--A--AA-T--
1 CAGAATCAGTATCAAGTAA
34248182 CAGAATCAGTATCAAGTAA
1 CAGAATCAGTATCAAGTAA
34248201 CAGAAT
1 CAGAAT
34248207 AAAAAATCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 14
0.66 0.02 0.32
Matches are distributed among these distances:
12 8 0.28
14 2 0.07
15 1 0.03
16 2 0.07
17 2 0.07
19 14 0.48
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (19 bp):
CAGAATCAGTATCAAGTAA
Found at i:34248622 original size:22 final size:22
Alignment explanation
Indices: 34248588--34248652 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
34248578 GCAAATACGT
*
34248588 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
34248610 TTGGCGCAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
34248632 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
34248653 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:34249515 original size:27 final size:27
Alignment explanation
Indices: 34249077--34249513 Score: 567
Period size: 27 Copynumber: 16.3 Consensus size: 27
34249067 GGGGCAAAAT
* * * *
34249077 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
34249103 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
34249130 GGTAATTTTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
34249157 AGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
34249184 GGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34249210 TTGTAATTCTACCCTACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* *
34249238 GGTAATTCTACCCTATAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34249265 GGTAATTCTACCCTACATGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
34249291 CGTAATTCTACCCTGCAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34249318 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
34249345 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34249372 GGTAATTCTACCCTATAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
34249398 TGGTAATTCTACCTTACAAGGGTATTCC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* * * *
34249426 GATAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
34249453 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
34249480 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
34249507 GGTAATT
1 GGTAATT
34249514 TTGTAAATCG
Statistics
Matches: 357, Mismatches: 48, Indels: 11
0.86 0.12 0.03
Matches are distributed among these distances:
26 41 0.11
27 311 0.87
28 5 0.01
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:34249527 original size:27 final size:27
Alignment explanation
Indices: 34249495--34249865 Score: 298
Period size: 27 Copynumber: 13.7 Consensus size: 27
34249485 TTTTACCCTA
* **
34249495 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **** * **
34249522 CGAGGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
34249549 CAAGGGTACTTTGGTAATTTTACACGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** * **
34249576 CGAGGGTATTTCAATAATTTTATAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
34249603 CGAGGGTATTTTAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
34249630 TAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
34249656 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* *
34249684 CAGGGGTATTTTGGTAATTTTATAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
34249710 CAAAGGGTATTTTAGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* ** *
34249738 CAAAGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
34249765 CAATGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
34249791 CTAGGGGTATTTTGGTGATTTTATAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * *
34249819 CAATGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
34249846 CAAGGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
34249866 GGTAAACTAA
Statistics
Matches: 282, Mismatches: 56, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.01
27 277 0.98
28 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:34249872 original size:27 final size:27
Alignment explanation
Indices: 34249605--34249865 Score: 333
Period size: 27 Copynumber: 9.7 Consensus size: 27
34249595 TTATAGGTCG
* * **
34249605 AGGGTATTTTAGTAATTTCACAAATTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
34249632 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
34249659 GGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * *
34249686 GGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
34249713 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* **
34249740 AAGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
34249767 ATGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * *
34249794 GGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
34249821 ATGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
34249848 AGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
34249866 GGTAAACTAA
Statistics
Matches: 203, Mismatches: 31, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 203 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:34249872 original size:54 final size:54
Alignment explanation
Indices: 34249605--34249865 Score: 369
Period size: 54 Copynumber: 4.8 Consensus size: 54
34249595 TTATAGGTCG
* ** * *
34249605 AGGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * *
34249659 GGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
** *
34249713 AGGGTATTTTAGTAATTTTACAAACCAAAGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * * *
34249767 ATGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* *
34249821 ATGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
34249866 GGTAAACTAA
Statistics
Matches: 183, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 183 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:34257264 original size:19 final size:19
Alignment explanation
Indices: 34257240--34257278 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
34257230 TAACGTGACC
34257240 GTATGTCACACATGACTGA
1 GTATGTCACACATGACTGA
*
34257259 GTATGTCACACATGGCTGA
1 GTATGTCACACATGACTGA
34257278 G
1 G
34257279 ACACACGCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (19 bp):
GTATGTCACACATGACTGA
Found at i:34265853 original size:23 final size:23
Alignment explanation
Indices: 34265795--34265888 Score: 84
Period size: 24 Copynumber: 3.9 Consensus size: 23
34265785 AAGCTATGAT
* *
34265795 CAGTAAGCTCTTCTTGAACTGATAGA
1 CAGTAAGCTC-TATTGAGCTGA-A-A
*
34265821 CAGTAAGCTCTATTGAGCTGAAT
1 CAGTAAGCTCTATTGAGCTGAAA
*
34265844 CGGTAAGCTCTGA-TGAGCTGAAAA
1 CAGTAAGCTCT-ATTGAGCTG-AAA
34265868 CAGTAAGCTCT-TATGAGCTGA
1 CAGTAAGCTCTAT-TGAGCTGA
34265889 TATATCCGTA
Statistics
Matches: 58, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
23 18 0.31
24 21 0.36
25 9 0.16
26 10 0.17
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (23 bp):
CAGTAAGCTCTATTGAGCTGAAA
Found at i:34265878 original size:24 final size:23
Alignment explanation
Indices: 34265820--34265888 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 23
34265810 GAACTGATAG
34265820 ACAGTAAGCTCTATTGAGCTG-AA
1 ACAGTAAGCTCTA-TGAGCTGAAA
* *
34265843 TCGGTAAGCTCTGATGAGCTGAAA
1 ACAGTAAGCTCT-ATGAGCTGAAA
34265867 ACAGTAAGCTCTTATGAGCTGA
1 ACAGTAAGCTC-TATGAGCTGA
34265889 TATATCCGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
23 17 0.44
24 21 0.54
25 1 0.03
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (23 bp):
ACAGTAAGCTCTATGAGCTGAAA
Found at i:34272633 original size:44 final size:43
Alignment explanation
Indices: 34272539--34272685 Score: 111
Period size: 43 Copynumber: 3.4 Consensus size: 43
34272529 TTCAATAAAC
* *
34272539 TCGCACACTTAGTGCCAATTAATTAGCTGAGGCTATAATAATA
1 TCGCACACTTAGTGCCAATTAATTAACTGAAGCTATAATAATA
* * *
34272582 TCACACACTTAGTGCC-ATTACATTAAATTGAAGCTATAA-AGGTA
1 TCGCACACTTAGTGCCAATTA-ATT-AACTGAAGCTATAATA-ATA
* * * * * * * * *
34272626 TCGCACACGTAGTGTCAAGT-ATTCAGTCAACACTGTAATAATC
1 TCGCACACTTAGTGCCAATTAATTAACTGAA-GCTATAATAATA
34272669 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
34272686 TTTTTGATAG
Statistics
Matches: 80, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
42 8 0.10
43 43 0.54
44 27 0.34
45 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.29
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAACTGAAGCTATAATAATA
Found at i:34272769 original size:14 final size:14
Alignment explanation
Indices: 34272750--34272780 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
34272740 TCCACATTTC
*
34272750 TATTCATTTCATCA
1 TATTCACTTCATCA
34272764 TATTCACTTCATCA
1 TATTCACTTCATCA
34272778 TAT
1 TAT
34272781 ATAAACATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.48
Consensus pattern (14 bp):
TATTCACTTCATCA
Found at i:34280192 original size:6 final size:6
Alignment explanation
Indices: 34280169--34280204 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
34280159 TTTCTAAATG
34280169 TTTTCA TTTCTCCA TTTTCA TTTTCA TTTTCA TTTT
1 TTTTCA TTT-T-CA TTTTCA TTTTCA TTTTCA TTTT
34280205 GGAGAAAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 21 0.75
7 2 0.07
8 5 0.18
ACGTcount: A:0.14, C:0.19, G:0.00, T:0.67
Consensus pattern (6 bp):
TTTTCA
Found at i:34280193 original size:63 final size:65
Alignment explanation
Indices: 34280117--34280261 Score: 170
Period size: 63 Copynumber: 2.3 Consensus size: 65
34280107 TTTTATTTTT
*
34280117 CATTTTCCATTTTCATTTCCAGTTTAGAGAAAAGCATAATAATTTCTAAATG-TTT-TCATTTCT
1 CATTTT-CATTTTCATTTCCAGTTTAGAGAAAACCATAATAATTTCTAAATGATTTCTCATTTCT
34280180 C
65 C
* * * * ** *
34280181 CATTTTCATTTTCATTTTCATTTTGGAGAAAACCATAATCATTTCTCTATGATTTCTTATTTCTC
1 CATTTTCATTTTCATTTCCAGTTTAGAGAAAACCATAATAATTTCTAAATGATTTCTCATTTCTC
* *
34280246 TATTTT-TTTTTCATTT
1 CATTTTCATTTTCATTT
34280262 ATATTCATTT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
63 38 0.55
64 18 0.26
65 13 0.19
ACGTcount: A:0.26, C:0.17, G:0.06, T:0.52
Consensus pattern (65 bp):
CATTTTCATTTTCATTTCCAGTTTAGAGAAAACCATAATAATTTCTAAATGATTTCTCATTTCTC
Found at i:34283972 original size:26 final size:26
Alignment explanation
Indices: 34283934--34283992 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
34283924 TATGTTAAAC
* *
34283934 AAAATAAAATTTAAATCATTATGATA
1 AAAATATAATTTAAATCACTATGATA
* * *
34283960 AAAATATAGTTTAGATCACTATTATA
1 AAAATATAATTTAAATCACTATGATA
34283986 AAAATAT
1 AAAATAT
34283993 GCAAAATACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (26 bp):
AAAATATAATTTAAATCACTATGATA
Found at i:34284411 original size:21 final size:21
Alignment explanation
Indices: 34284387--34284435 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
34284377 AATATTGCTA
* * *
34284387 AAAATTATAAGAAATTATTTG
1 AAAATAATAAAAAAATATTTG
*
34284408 AAAATAATAAAAAAATA-TTA
1 AAAATAATAAAAAAATATTTG
34284428 AAAATAAT
1 AAAATAAT
34284436 GTCCGTTATG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (21 bp):
AAAATAATAAAAAAATATTTG
Found at i:34288549 original size:28 final size:28
Alignment explanation
Indices: 34288509--34288587 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
34288499 GCAATCAAAT
* * *
34288509 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
34288537 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
34288565 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
34288588 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:34294768 original size:28 final size:28
Alignment explanation
Indices: 34294728--34294806 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
34294718 GCAATCAAAT
* * *
34294728 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
34294756 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
34294784 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
34294807 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:34297251 original size:50 final size:50
Alignment explanation
Indices: 34297171--34297553 Score: 358
Period size: 50 Copynumber: 7.6 Consensus size: 50
34297161 CTGTTGTGAT
* *
34297171 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* * ** * * * *
34297221 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-TTAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGG
* * * * * *
34297272 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* * *
34297322 TCACGTGTGTAGTACTAAGTGCGGGCTACTATGTGTACCAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* * * * * * *
34297372 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTTGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGG
* ** * * *
34297423 TCACATGTGTAGTACTAAGTGCAAGG-TACTACATGTATTAGATAGTTAAG
1 TCACATGTGTAGTACTAAGTGC-AGGCTACTACGTGTACCAGATTGATAGG
** * * * *
34297473 TCAGGTCTGTAGTACTAAGTGCAGACTACTACATGTACTAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
34297523 TCACATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
34297554 TGCATACCAG
Statistics
Matches: 263, Mismatches: 62, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
49 8 0.03
50 183 0.70
51 67 0.25
52 5 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
Found at i:34297349 original size:101 final size:101
Alignment explanation
Indices: 34297171--34297561 Score: 314
Period size: 101 Copynumber: 3.9 Consensus size: 101
34297161 CTGTTGTGAT
* * *
34297171 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATGGATAAGTCACATGTGTAGTAC
34297236 TAAGTGCAGGCTACTATGCATACCCGTTAACTTCGA
66 TAAGTGCAGGCTACTATGCATACCCGTTAACTTCGA
* * * * *
34297272 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATGGATAAGTCACATGTGTAGTAC
* ** * * * *
34297337 TAAGTGCGGGCTACTATGTGTACCAGATTGA--TAGG
66 TAAGTGCAGGCTACTATGCATACCCG-TTAACTTCGA
* * * ** * ** **
34297372 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTTGATCACATGTGTAGT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATGGA-TAAG-TCACATGTGTAGT
* * * *
34297436 ACTAAGTGCAAGG-TACTACATGTATTA---GAT-AGTT-AA
64 ACTAAGTGC-AGGCTACT--ATGCA-TACCCGTTAACTTCGA
* * * * * * * *
34297472 GTCAGGTCTGTAGTACTAAGTGCAGACTACTACATGTACTAGATTGATAGGTCACATGTGTAGTA
1 -TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATGGATAAGTCACATGTGTAGTA
34297537 CTAAGTGCAGGCTACTATGCATACC
65 CTAAGTGCAGGCTACTATGCATACC
34297562 AGAGAGCTTC
Statistics
Matches: 229, Mismatches: 47, Indels: 30
0.75 0.15 0.10
Matches are distributed among these distances:
97 2 0.01
98 4 0.02
99 5 0.02
100 65 0.28
101 139 0.61
102 8 0.03
103 4 0.02
104 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATGGATAAGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCATACCCGTTAACTTCGA
Found at i:34297453 original size:151 final size:151
Alignment explanation
Indices: 34297171--34297561 Score: 622
Period size: 151 Copynumber: 2.6 Consensus size: 151
34297161 CTGTTGTGAT
*
34297171 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
* *
34297236 TAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCTAC
66 TAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGAAGGCTAC
* *
34297301 TACGTGTATCAGATGGTTAAG
131 TACATGTATCAGATAGTTAAG
* *
34297322 TCACGTGTGTAGTACTAAGTGCGGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
* *
34297387 TAAGTGCAGGCTACTATGCGTACCCGTTAACTTTGATCACATGTGTAGTACTAAGTGCAAGG-TA
66 TAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACATGTGTAGTACTAAGTG-AAGGCTA
*
34297451 CTACATGTATTAGATAGTTAAG
130 CTACATGTATCAGATAGTTAAG
* * * * * *
34297473 TCAGGTCTGTAGTACTAAGTGCAGACTACTACATGTACTAGATTGATAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
34297538 TAAGTGCAGGCTACTATGCATACC
66 TAAGTGCAGGCTACTATGCATACC
34297562 AGAGAGCTTC
Statistics
Matches: 220, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
151 217 0.99
152 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGAAGGCTAC
TACATGTATCAGATAGTTAAG
Found at i:34299823 original size:56 final size:56
Alignment explanation
Indices: 34299737--34299849 Score: 217
Period size: 56 Copynumber: 2.0 Consensus size: 56
34299727 AGCCTTATAT
34299737 ATGAAAAATACTCTAGCCAACAGGTTAGTATCCTAAAAACGTCTCTACGAGTTCAG
1 ATGAAAAATACTCTAGCCAACAGGTTAGTATCCTAAAAACGTCTCTACGAGTTCAG
*
34299793 ATGAAAAATACTCTAGCCAACAGGTTAGTATCCTAAAAATGTCTCTACGAGTTCAG
1 ATGAAAAATACTCTAGCCAACAGGTTAGTATCCTAAAAACGTCTCTACGAGTTCAG
34299849 A
1 A
34299850 ATGGCTGAAG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (56 bp):
ATGAAAAATACTCTAGCCAACAGGTTAGTATCCTAAAAACGTCTCTACGAGTTCAG
Found at i:34302098 original size:29 final size:28
Alignment explanation
Indices: 34302021--34302102 Score: 87
Period size: 29 Copynumber: 2.9 Consensus size: 28
34302011 TTTTTCAAAT
**
34302021 AATTATTAAAAATAA-AAAAA-TAAAAG
1 AATTATTAAAAATAATAAAAATTATTAG
* * *
34302047 AATTATGAATAATTATAAGAAATTATTAG
1 AATTATTAAAAATAATAA-AAATTATTAG
34302076 AATTATTAAAAAATAATAAAAATTATT
1 AATTATT-AAAAATAATAAAAATTATT
34302103 TAAAACAATG
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
26 12 0.27
27 2 0.05
28 3 0.07
29 18 0.41
30 9 0.20
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (28 bp):
AATTATTAAAAATAATAAAAATTATTAG
Found at i:34304792 original size:23 final size:23
Alignment explanation
Indices: 34304762--34304832 Score: 133
Period size: 23 Copynumber: 3.1 Consensus size: 23
34304752 ATGAAGCTTG
34304762 ATAAATTCGTATGAATATGTTAA
1 ATAAATTCGTATGAATATGTTAA
34304785 ATAAATTCGTATGAATATGTTAA
1 ATAAATTCGTATGAATATGTTAA
*
34304808 ATAAATTTGTATGAATATGTTAA
1 ATAAATTCGTATGAATATGTTAA
34304831 AT
1 AT
34304833 GAGATAGAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.41
Consensus pattern (23 bp):
ATAAATTCGTATGAATATGTTAA
Found at i:34307600 original size:28 final size:28
Alignment explanation
Indices: 34307563--34307669 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
34307553 GCAATCAAAT
*
34307563 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
34307591 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
34307619 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
34307647 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
34307670 CGAATGATTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:34310714 original size:40 final size:40
Alignment explanation
Indices: 34310639--34310820 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
34310629 AACCCAAGTA
* **
34310639 CCTTCGGGATTTAG-CCGGATATAG-CAACTCCCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
34310678 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
34310718 CCTTCGAGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
34310758 CCTTCGGGACTTGGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
34310798 CCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
34310821 CATTCGAATA
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.09
40 116 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:34317350 original size:27 final size:28
Alignment explanation
Indices: 34317294--34317363 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
34317284 AAACTTGTAC
34317294 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
34317322 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
34317349 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
34317364 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:34317374 original size:27 final size:27
Alignment explanation
Indices: 34317294--34317375 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
34317284 AAACTTGTAC
* *
34317294 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
34317322 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
34317349 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
34317376 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:34326096 original size:93 final size:93
Alignment explanation
Indices: 34325989--34326159 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
34325979 GCCCCTAAGT
* *
34325989 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34326054 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
34326082 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34326147 CGAGTTCGGATGC
66 CGAGTTCGGATGC
34326160 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:34326156 original size:46 final size:46
Alignment explanation
Indices: 34325984--34326156 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
34325974 AACCCGCCCC
* * *
34325984 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
34326030 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
34326078 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
34326123 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
34326157 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:34326612 original size:30 final size:30
Alignment explanation
Indices: 34326578--34326637 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
34326568 ATTTAATACG
34326578 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
34326608 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
34326638 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:34333635 original size:47 final size:49
Alignment explanation
Indices: 34333518--34333692 Score: 174
Period size: 45 Copynumber: 3.8 Consensus size: 49
34333508 AACCCGCCCC
* * * * *
34333518 TAAGTGAACTCGGACTCAACTCAACGAG--C-TA-GGCGTTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA
*
34333563 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATCCA
* *
34333611 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA
*
34333656 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
34333693 TCAACCATCC
Statistics
Matches: 108, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 30 0.28
46 29 0.27
47 30 0.28
48 3 0.03
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (49 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA
Found at i:34333681 original size:93 final size:92
Alignment explanation
Indices: 34333523--34333692 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
34333513 GCCCCTAAGT
*
34333523 GAACTCGGACTCAACTCAACGAGCTAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
34333588 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* *
34333615 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34333680 CGAGTTCGGATGC
65 CGAGTTCGGATGC
34333693 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 26 0.35
93 48 0.65
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:34334145 original size:30 final size:30
Alignment explanation
Indices: 34334111--34334170 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
34334101 ATTTAATACG
34334111 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
34334141 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
34334171 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:34335719 original size:21 final size:22
Alignment explanation
Indices: 34335675--34335722 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 22
34335665 GCTTTTCAGG
34335675 TTTAAATATGTTAATTTTGAAA
1 TTTAAATATGTTAATTTTGAAA
*
34335697 TTTAAA-AT-TTAATTTTTATAA
1 TTTAAATATGTTAATTTTGA-AA
34335718 TTTAA
1 TTTAA
34335723 TTTTGTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 9 0.38
21 9 0.38
22 6 0.25
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (22 bp):
TTTAAATATGTTAATTTTGAAA
Found at i:34335731 original size:13 final size:14
Alignment explanation
Indices: 34335697--34335726 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
34335687 AATTTTGAAA
*
34335697 TTTAAAATTTAATT
1 TTTATAATTTAATT
34335711 TTTATAATTTAATT
1 TTTATAATTTAATT
34335725 TT
1 TT
34335727 GTAATATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTATAATTTAATT
Found at i:34335941 original size:20 final size:20
Alignment explanation
Indices: 34335916--34335960 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
34335906 AAACTCTTTC
*
34335916 AAATTTAAAAATAAAAATAA
1 AAATTTAAAAATAAAAACAA
* *
34335936 AAATTTAAAATTATAAACAA
1 AAATTTAAAAATAAAAACAA
34335956 AAATT
1 AAATT
34335961 CCAAAATACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
AAATTTAAAAATAAAAACAA
Found at i:34337984 original size:11 final size:10
Alignment explanation
Indices: 34337970--34338046 Score: 61
Period size: 10 Copynumber: 7.8 Consensus size: 10
34337960 TTTTATGTCA
34337970 TTTAATAATTT
1 TTTAATAA-TT
* *
34337981 TTTAACAACT
1 TTTAATAATT
*
34337991 TAT-ATAATT
1 TTTAATAATT
34338000 TTT-ATAATAT
1 TTTAATAAT-T
*
34338010 TTTACTAATT
1 TTTAATAATT
*
34338020 TCTAATAATT
1 TTTAATAATT
*
34338030 TTTAA-ACTT
1 TTTAATAATT
34338039 TTTAATAA
1 TTTAATAA
34338047 ATATTACTAC
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
9 19 0.37
10 21 0.41
11 11 0.22
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (10 bp):
TTTAATAATT
Found at i:34338380 original size:20 final size:19
Alignment explanation
Indices: 34338309--34338381 Score: 74
Period size: 20 Copynumber: 3.7 Consensus size: 19
34338299 ATTTTACAAC
* *
34338309 TTTTTATACTTTTAATAAG
1 TTTTTATAATTTTAATAAT
*
34338328 TTTTTATTAATTTTTATAGAT
1 TTTTTA-TAATTTTAATA-AT
* *
34338349 TTTTTATCATTTTAATTAT
1 TTTTTATAATTTTAATAAT
34338368 TTTTATATAATTTT
1 TTTT-TATAATTTT
34338382 CTATCATTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
19 12 0.27
20 25 0.57
21 7 0.16
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (19 bp):
TTTTTATAATTTTAATAAT
Found at i:34338387 original size:30 final size:30
Alignment explanation
Indices: 34338328--34338396 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
34338318 TTTTAATAAG
* *
34338328 TTTTTATTAATTTTTATAGATTTTTTATCA
1 TTTTAATTAATTTTTATAGATTTTCTATCA
*
34338358 TTTTAATT-ATTTTTATATAATTTTCTATCA
1 TTTTAATTAATTTTTATA-GATTTTCTATCA
34338388 TTTCTAATT
1 TTT-TAATT
34338397 TTTATAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 9 0.26
30 20 0.59
31 5 0.15
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.65
Consensus pattern (30 bp):
TTTTAATTAATTTTTATAGATTTTCTATCA
Found at i:34338404 original size:9 final size:9
Alignment explanation
Indices: 34338309--34338410 Score: 55
Period size: 10 Copynumber: 10.8 Consensus size: 9
34338299 ATTTTACAAC
*
34338309 TTTTTATAC
1 TTTTTATAA
*
34338318 TTTTAATAA
1 TTTTTATAA
34338327 GTTTTTATTAA
1 -TTTTTA-TAA
34338338 TTTTTATAGA
1 TTTTTATA-A
*
34338348 TTTTTTATCA
1 -TTTTTATAA
* *
34338358 TTTTAATTAT
1 TTTTTA-TAA
34338368 TTTTATATAA
1 TTTT-TATAA
*
34338378 TTTTCTATCA
1 TTTT-TATAA
*
34338388 --TTTCTAA
1 TTTTTATAA
34338395 TTTTTATAA
1 TTTTTATAA
*
34338404 TATTTAT
1 TTTTTAT
34338411 TTAATATTTT
Statistics
Matches: 70, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
7 3 0.04
8 2 0.03
9 26 0.37
10 28 0.40
11 11 0.16
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:34338541 original size:10 final size:10
Alignment explanation
Indices: 34338440--34338565 Score: 58
Period size: 10 Copynumber: 13.3 Consensus size: 10
34338430 TAACAAATTA
34338440 ATAATATTTT
1 ATAATATTTT
* *
34338450 ATAACATTTA
1 ATAATATTTT
*
34338460 ATAGT-TTTT
1 ATAATATTTT
34338469 ATAAT-TTTT
1 ATAATATTTT
* *
34338478 -TAAAATATT
1 ATAATATTTT
* *
34338487 ATTATATTTA
1 ATAATATTTT
34338497 ATAA-ATTTT
1 ATAATATTTT
34338506 ATACAT-TTTCT
1 ATA-ATATTT-T
*
34338517 AT-A-ATTTC
1 ATAATATTTT
34338525 A-AA-ATTTT
1 ATAATATTTT
34338533 ATAATATTTT
1 ATAATATTTT
34338543 AATAA-ATTTT
1 -ATAATATTTT
*
34338553 -TAAGAATTTT
1 ATAA-TATTTT
34338563 ATA
1 ATA
34338566 TAATCCTTAA
Statistics
Matches: 87, Mismatches: 16, Indels: 25
0.68 0.12 0.20
Matches are distributed among these distances:
8 13 0.15
9 27 0.31
10 38 0.44
11 9 0.10
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.54
Consensus pattern (10 bp):
ATAATATTTT
Found at i:34338547 original size:27 final size:29
Alignment explanation
Indices: 34338499--34338565 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 29
34338489 TATATTTAAT
34338499 AAATTTTATACATTTTCTAT-AA-TTTCA
1 AAATTTTATACATTTTCTATAAATTTTCA
*
34338526 AAATTTTATA-ATATTT-TAATAAATTTTTA
1 AAATTTTATACAT-TTTCT-ATAAATTTTCA
34338555 AGAATTTTATA
1 A-AATTTTATA
34338566 TAATCCTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
26 3 0.09
27 15 0.44
28 2 0.06
29 5 0.15
30 9 0.26
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (29 bp):
AAATTTTATACATTTTCTATAAATTTTCA
Found at i:34338550 original size:47 final size:46
Alignment explanation
Indices: 34338440--34338552 Score: 124
Period size: 47 Copynumber: 2.4 Consensus size: 46
34338430 TAACAAATTA
* * *
34338440 ATAATATTTT-ATAACATTTAATAGTTTTTATAATTTTTTAAAATATT
1 ATAATATTTTAATAA-ATTTTATAATTTTTATAA-TTTTCAAAATATT
* *
34338487 ATTATA-TTTAATAAATTTTATACATTTTCTATAA-TTTCAAAATTTT
1 ATAATATTTTAATAAATTTTATA-ATTTT-TATAATTTTCAAAATATT
34338533 ATAATATTTTAATAAATTTT
1 ATAATATTTTAATAAATTTT
34338553 TAAGAATTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
46 25 0.45
47 26 0.46
48 5 0.09
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.55
Consensus pattern (46 bp):
ATAATATTTTAATAAATTTTATAATTTTTATAATTTTCAAAATATT
Found at i:34338602 original size:33 final size:33
Alignment explanation
Indices: 34338565--34338635 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
34338555 AGAATTTTAT
34338565 ATAATCCTT-AAAAATCAATTAAGCCCTCCTAAA
1 ATAAT-CTTAAAAAATCAATTAAGCCCTCCTAAA
* * **
34338598 ATAATTTTAAAAAATCAATTAAGTCCTTGTAAA
1 ATAATCTTAAAAAATCAATTAAGCCCTCCTAAA
34338631 ATAAT
1 ATAAT
34338636 AAAAGATCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 2 0.06
33 31 0.94
ACGTcount: A:0.48, C:0.15, G:0.04, T:0.32
Consensus pattern (33 bp):
ATAATCTTAAAAAATCAATTAAGCCCTCCTAAA
Found at i:34338645 original size:30 final size:30
Alignment explanation
Indices: 34338572--34338645 Score: 78
Period size: 33 Copynumber: 2.4 Consensus size: 30
34338562 TATATAATCC
34338572 TTAAAAATCAATTAAGCCCTCCTAAAATAA
1 TTAAAAATCAATTAAGCCCTCCTAAAATAA
* **
34338602 TTTTAAAAAATCAATTAAGTCCTTGTAAAATAA
1 --TT-AAAAATCAATTAAGCCCTCCTAAAATAA
34338635 -TAAAAGATCAA
1 TTAAAA-ATCAA
34338646 GTTAGCTCAC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
29 4 0.11
30 6 0.16
32 2 0.05
33 25 0.68
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.30
Consensus pattern (30 bp):
TTAAAAATCAATTAAGCCCTCCTAAAATAA
Found at i:34339068 original size:22 final size:20
Alignment explanation
Indices: 34339028--34339110 Score: 60
Period size: 21 Copynumber: 4.0 Consensus size: 20
34339018 TCAATACGAA
* *
34339028 TTTAAGATT-TTTTTATATT
1 TTTAAAATTATTTTTATTTT
*
34339047 ATTAAAATTATTTTTATTTAT
1 TTTAAAATTATTTTTATTT-T
* * * *
34339068 TTTTACATAACTTTTATTTT
1 TTTAAAATTATTTTTATTTT
*
34339088 TTAAAAATTATATTTTTATTTT
1 TTTAAAA-T-TATTTTTATTTT
34339110 T
1 T
34339111 ATTTAAAATA
Statistics
Matches: 47, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
19 7 0.15
20 13 0.28
21 16 0.34
22 11 0.23
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.65
Consensus pattern (20 bp):
TTTAAAATTATTTTTATTTT
Found at i:34339714 original size:46 final size:46
Alignment explanation
Indices: 34339662--34339753 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
34339652 GATTTAATAT
*
34339662 ATTAATGTAATTTGATAAAAGATTTCACATAATTAACAAGTACCAA
1 ATTAATGTAATTTGATAAAAGAGTTCACATAATTAACAAGTACCAA
* **
34339708 ATTAATGTAATTTGATAAAAGAGTTCACGTAATTAGTAAGTACCAA
1 ATTAATGTAATTTGATAAAAGAGTTCACATAATTAACAAGTACCAA
34339754 CATCACCTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.33
Consensus pattern (46 bp):
ATTAATGTAATTTGATAAAAGAGTTCACATAATTAACAAGTACCAA
Found at i:34339849 original size:14 final size:16
Alignment explanation
Indices: 34339830--34339861 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
34339820 TTTTTTTATT
34339830 TAAATAA-TAT-AAAA
1 TAAATAATTATCAAAA
34339844 TAAATAATTATCAAAA
1 TAAATAATTATCAAAA
34339860 TA
1 TA
34339862 GGATAGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 3 0.19
16 6 0.38
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAATAATTATCAAAA
Found at i:34342997 original size:29 final size:29
Alignment explanation
Indices: 34342965--34343020 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
34342955 AATTTGTACA
*
34342965 GGATGGATTTTGAAAAAATAGTTTTGAGG
1 GGATGGATTCTGAAAAAATAGTTTTGAGG
* * *
34342994 GGATGGGTTCTGAAGAAATATTTTTGA
1 GGATGGATTCTGAAAAAATAGTTTTGA
34343021 CTAGATGGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.32, C:0.02, G:0.30, T:0.36
Consensus pattern (29 bp):
GGATGGATTCTGAAAAAATAGTTTTGAGG
Found at i:34345507 original size:29 final size:29
Alignment explanation
Indices: 34345475--34345606 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
34345465 ATAGTGAATC
34345475 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
34345504 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
34345534 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
34345563 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
34345592 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34345607 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:34345616 original size:59 final size:59
Alignment explanation
Indices: 34345475--34345606 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 59
34345465 ATAGTGAATC
34345475 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
34345534 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
34345592 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34345607 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 24 0.33
59 48 0.67
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:34356441 original size:43 final size:44
Alignment explanation
Indices: 34356339--34356441 Score: 133
Period size: 42 Copynumber: 2.4 Consensus size: 44
34356329 ATCCCAGGCG
* * *
34356339 TGGTCTTACATGT-AATCAAATATTGATGCTACTGTCCCAGACA
1 TGGTCTTACACGTAAATCAAATACTGATGCTACTGTCCCAAACA
*
34356382 GGGTCTTACACG-AAATCAAATACT-ATGCTGA-TGTCCCAAACA
1 TGGTCTTACACGTAAATCAAATACTGATGCT-ACTGTCCCAAACA
34356424 TGGTCTTACACGTAAATC
1 TGGTCTTACACGTAAATC
34356442 TCAAATTGAT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
42 26 0.50
43 26 0.50
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (44 bp):
TGGTCTTACACGTAAATCAAATACTGATGCTACTGTCCCAAACA
Found at i:34358978 original size:18 final size:18
Alignment explanation
Indices: 34358955--34359001 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
34358945 TCCCTCTCTT
**
34358955 CTTTCTCTTTTTCTTTTG
1 CTTTCTCTTTTAATTTTG
34358973 CTTTCT-TTTTAATTTTG
1 CTTTCTCTTTTAATTTTG
34358990 CATGTTCTCTTT
1 C-T-TTCTCTTT
34359002 CTTTCATTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 10 0.42
18 7 0.29
19 4 0.17
20 3 0.12
ACGTcount: A:0.06, C:0.19, G:0.06, T:0.68
Consensus pattern (18 bp):
CTTTCTCTTTTAATTTTG
Found at i:34359137 original size:19 final size:18
Alignment explanation
Indices: 34359082--34359137 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 18
34359072 CATTTTATTA
34359082 ATTATA-ATAT-AT-AAC
1 ATTATATATATAATAAAC
*
34359097 A-TATATATATATTAAAC
1 ATTATATATATAATAAAC
34359114 TATTATATATATAATACAAC
1 -ATTATATATATAATA-AAC
34359134 ATTA
1 ATTA
34359138 ATGTCATCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
14 4 0.12
15 5 0.15
16 1 0.03
17 3 0.09
18 1 0.03
19 16 0.48
20 3 0.09
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTATATATATAATAAAC
Found at i:34361615 original size:79 final size:79
Alignment explanation
Indices: 34361475--34361694 Score: 266
Period size: 79 Copynumber: 2.8 Consensus size: 79
34361465 TATTCGAATG
* *
34361475 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCT-AGTGACTATATCCGGGCTAAG-TCCCGAAGG
* * *
34361539 CATTTGTGCGAGTTACT
63 CATTTATGCGAGTGACC
* *
34361556 ATATCCGGGCCAA-ACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
34361620 TTTATGCTAGTGACC
65 TTTATGCGAGTGACC
* * ** *
34361635 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAG
34361695 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 15 0.12
79 67 0.55
80 27 0.22
81 12 0.10
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCGAGTGACC
Found at i:34361628 original size:40 final size:40
Alignment explanation
Indices: 34361475--34361694 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
34361465 TATTCGAATG
*
34361475 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
34361516 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* * *
34361556 ATATCCGGGCCAA-ACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
34361595 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * **
34361635 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
34361674 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
34361695 ATACTTGGGT
Statistics
Matches: 152, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
38 13 0.09
39 48 0.32
40 62 0.41
41 28 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:34369662 original size:40 final size:40
Alignment explanation
Indices: 34369561--34369781 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
34369551 TATTCGAATG
* * *
34369561 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
34369602 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
34369642 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
34369682 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
34369722 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
34369761 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
34369782 ATACTTGGGT
Statistics
Matches: 153, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.08
39 15 0.10
40 96 0.63
41 28 0.18
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:34374839 original size:40 final size:40
Alignment explanation
Indices: 34374743--34374895 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
34374733 CGAATGGTAT
* * * *
34374743 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
34374784 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
34374824 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
34374864 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
34374896 CGCTATATCC
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 69 0.73
41 25 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:34378483 original size:14 final size:14
Alignment explanation
Indices: 34378466--34378512 Score: 85
Period size: 14 Copynumber: 3.4 Consensus size: 14
34378456 TTTATTTAGT
*
34378466 ATATTGGTTTATCA
1 ATATTAGTTTATCA
34378480 ATATTAGTTTATCA
1 ATATTAGTTTATCA
34378494 ATATTAGTTTATCA
1 ATATTAGTTTATCA
34378508 ATATT
1 ATATT
34378513 TTAAATGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.51
Consensus pattern (14 bp):
ATATTAGTTTATCA
Found at i:34378484 original size:28 final size:29
Alignment explanation
Indices: 34378453--34378515 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 29
34378443 TTTTTATTAT
*
34378453 TATTTTA-TTTAGT-ATATTGGTTTATCAA
1 TATTTTAGTTTA-TAATATTAGTTTATCAA
34378481 TA--TTAGTTTATCAATATTAGTTTATCAA
1 TATTTTAGTTTAT-AATATTAGTTTATCAA
34378509 TATTTTA
1 TATTTTA
34378516 AATGATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
26 4 0.14
27 4 0.14
28 18 0.62
30 3 0.10
ACGTcount: A:0.32, C:0.05, G:0.08, T:0.56
Consensus pattern (29 bp):
TATTTTAGTTTATAATATTAGTTTATCAA
Found at i:34381445 original size:6 final size:6
Alignment explanation
Indices: 34381434--34381537 Score: 63
Period size: 6 Copynumber: 17.3 Consensus size: 6
34381424 TTATTAAAAT
* * *
34381434 AAATAA AAAT-A AAAT-A AAATAA AAA-ATG AAATAA AAATTAA ATATTA
1 AAATAA AAATAA AAATAA AAATAA AAATA-A AAATAA AAA-TAA AAATAA
* * * * * *
34381481 AAATCA AAAT-T AAATAA AAATTAA AGACAA AGATAA AAATGAG AAATAA
1 AAATAA AAATAA AAATAA AAA-TAA AAATAA AAATAA AAAT-AA AAATAA
34381530 AAATAA AA
1 AAATAA AA
34381538 CTAAGAAAAG
Statistics
Matches: 77, Mismatches: 14, Indels: 14
0.73 0.13 0.13
Matches are distributed among these distances:
5 15 0.19
6 46 0.60
7 16 0.21
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:34381460 original size:17 final size:16
Alignment explanation
Indices: 34381428--34381537 Score: 62
Period size: 19 Copynumber: 6.3 Consensus size: 16
34381418 TCCCCTTTAT
34381428 TAAAAT-AAATAAAAA
1 TAAAATAAAATAAAAA
34381443 TAAAATAAAATAAAAAA
1 TAAAATAAAAT-AAAAA
* *
34381460 TGAAATAAAAATTAAATAT
1 TAAAAT-AAAA-TAAA-AA
34381479 TAAAATCAAAATTAAATAA
1 TAAAAT-AAAA-TAAA-AA
* * *
34381498 -AAATTAAAGACAAAGA
1 TAAAATAAA-ATAAAAA
34381514 TAAAAATGAGAAATAAAAA
1 T-AAAAT-A-AAATAAAAA
34381533 TAAAA
1 TAAAA
34381538 CTAAGAAAAG
Statistics
Matches: 74, Mismatches: 11, Indels: 17
0.73 0.11 0.17
Matches are distributed among these distances:
15 6 0.08
16 5 0.07
17 16 0.22
18 20 0.27
19 25 0.34
20 2 0.03
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.21
Consensus pattern (16 bp):
TAAAATAAAATAAAAA
Found at i:34387684 original size:31 final size:31
Alignment explanation
Indices: 34387646--34387706 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
34387636 GATTACGAGT
*
34387646 TAGTGATTGACTACAACCGGGGAAAGGCGAC
1 TAGTGATTGACTACAACCAGGGAAAGGCGAC
*
34387677 TAGTGATTGACTACCACCAGGGAAAGGCGA
1 TAGTGATTGACTACAACCAGGGAAAGGCGA
34387707 ATATGGTCGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.20, G:0.31, T:0.16
Consensus pattern (31 bp):
TAGTGATTGACTACAACCAGGGAAAGGCGAC
Found at i:34389961 original size:43 final size:42
Alignment explanation
Indices: 34389841--34390005 Score: 172
Period size: 43 Copynumber: 3.9 Consensus size: 42
34389831 AGCTCGTAGA
* * *
34389841 ATGCCAACGTCCCAGACTTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATAT-G
* *
34389884 ATGCC-ACTGTCCCAGATAGGGTCTTACACGAAATCAAATATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAAATATG
* * * * *
34389926 ATGCCAATGTCCCAGAAATGGTCTTACATGTAAATCTCTAAT-CG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAA--TCAAATATG
*
34389970 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCA
34390006 CAAATCAGAA
Statistics
Matches: 101, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 27 0.27
43 40 0.40
44 27 0.27
45 5 0.05
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATATG
Found at i:34390000 original size:86 final size:85
Alignment explanation
Indices: 34389841--34390005 Score: 219
Period size: 86 Copynumber: 1.9 Consensus size: 85
34389831 AGCTCGTAGA
**
34389841 ATGCCAACGTCCCAGACTTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
1 ATGCCAACGTCCCAGAAATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
34389906 CTTACACGAAATCAAATATG
66 CTTACACGAAATCAAATATG
* ** *
34389926 ATGCCAATGTCCCAGAAATGGTCTTACATGTAAATC-TCTAATCGATGCCAAC-GTCCCAGA-CG
1 ATGCCAACGTCCCAGAAATGGTCTTACATGT-AATCAAAT-ATCGATGCC-ACTGTCCCAGATAG
34389988 TGGTCTTACACGAAATCA
63 -GGTCTTACACGAAATCA
34390006 CAAATCAGAA
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
85 30 0.43
86 38 0.54
87 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (85 bp):
ATGCCAACGTCCCAGAAATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
CTTACACGAAATCAAATATG
Found at i:34397181 original size:30 final size:29
Alignment explanation
Indices: 34397087--34397188 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
34397077 TATAGTGAAT
* * *
34397087 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
34397116 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
34397144 GCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
34397174 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
34397189 CAATCTTGTC
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
28 22 0.37
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:34397231 original size:42 final size:42
Alignment explanation
Indices: 34397167--34397303 Score: 154
Period size: 42 Copynumber: 3.5 Consensus size: 42
34397157 GCTGTACAAT
34397167 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
* **
34397209 TTTATACCCGCACACTTAGTG-C---C--GT-A-C-AAT---
1 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
34397239 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
*
34397281 TTTATACCCGCACACTTAGTGCC
1 TTTAAACCCGCACACTTAGTGCC
34397304 GTGACCAATA
Statistics
Matches: 76, Mismatches: 7, Indels: 24
0.71 0.07 0.22
Matches are distributed among these distances:
30 20 0.26
31 1 0.01
33 1 0.01
34 2 0.03
35 1 0.01
36 4 0.05
37 1 0.01
38 2 0.03
39 1 0.01
41 1 0.01
42 42 0.55
ACGTcount: A:0.24, C:0.33, G:0.14, T:0.29
Consensus pattern (42 bp):
TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:34397262 original size:72 final size:72
Alignment explanation
Indices: 34397145--34397305 Score: 313
Period size: 72 Copynumber: 2.2 Consensus size: 72
34397135 GAATCAAACG
*
34397145 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCAT
1 CGCACACTTAGTGCCGTACAATTTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCAT
34397210 TTATACC
66 TTATACC
34397217 CGCACACTTAGTGCCGTACAATTTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCAT
1 CGCACACTTAGTGCCGTACAATTTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCAT
34397282 TTATACC
66 TTATACC
34397289 CGCACACTTAGTGCCGT
1 CGCACACTTAGTGCCGT
34397306 GACCAATACC
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 88 1.00
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (72 bp):
CGCACACTTAGTGCCGTACAATTTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCAT
TTATACC
Found at i:34402817 original size:42 final size:43
Alignment explanation
Indices: 34402728--34402817 Score: 105
Period size: 43 Copynumber: 2.1 Consensus size: 43
34402718 CCAGACGTGG
* * *
34402728 TCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAAGG
1 TCTTACATGAAATCAAATATCGATGCCACTGTCCCAGAAAAGA
*
34402771 TCTTACATGAAATCAAATA-CGATGTCGA-TGTCCCA-AAAATGA
1 TCTTACATGAAATCAAATATCGATG-CCACTGTCCCAGAAAA-GA
34402813 TCTTA
1 TCTTA
34402818 TACATAAATC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
41 3 0.07
42 18 0.44
43 20 0.49
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (43 bp):
TCTTACATGAAATCAAATATCGATGCCACTGTCCCAGAAAAGA
Found at i:34406736 original size:40 final size:40
Alignment explanation
Indices: 34406651--34406801 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
34406641 AATTGAATGA
* * *
34406651 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
34406691 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
34406732 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
34406771 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
34406802 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:34406815 original size:40 final size:40
Alignment explanation
Indices: 34406687--34406817 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
34406677 TATGCTGGAA
* * *
34406687 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
34406727 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
34406767 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
34406807 ATTATATCCGG
1 ATTATATCCGG
34406818 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:34414786 original size:40 final size:40
Alignment explanation
Indices: 34414720--34414870 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
34414710 AAATTGAATG
* * *
34414720 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
34414759 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
34414799 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
34414839 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
34414871 ACGTGATTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:34414884 original size:40 final size:40
Alignment explanation
Indices: 34414756--34414886 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
34414746 TATGCTGGAA
* * *
34414756 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
34414796 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
34414836 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
34414876 ATTATATCCGG
1 ATTATATCCGG
34414887 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:34422801 original size:40 final size:40
Alignment explanation
Indices: 34422716--34422866 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
34422706 AATTGAATGA
* * *
34422716 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
34422756 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
34422797 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
34422836 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
34422867 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:34422880 original size:40 final size:40
Alignment explanation
Indices: 34422752--34422882 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
34422742 TATGCTGGAA
* * *
34422752 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
34422792 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
34422832 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
34422872 ATTATATCCGG
1 ATTATATCCGG
34422883 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:34431722 original size:13 final size:13
Alignment explanation
Indices: 34431700--34431729 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
34431690 AATCTATAAA
*
34431700 ACACTGAATGAAC
1 ACACTAAATGAAC
34431713 ACACTAAATGAAC
1 ACACTAAATGAAC
34431726 ACAC
1 ACAC
34431730 AAAGTAAGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.27, G:0.10, T:0.13
Consensus pattern (13 bp):
ACACTAAATGAAC
Found at i:34441558 original size:25 final size:27
Alignment explanation
Indices: 34441504--34441616 Score: 99
Period size: 27 Copynumber: 4.1 Consensus size: 27
34441494 AGGAAGCGTC
*
34441504 CTGGTGGCTA-TGCCACAAATTATCTGT-T
1 CTGGTGGC-ACTGCCACATA-T-TCTGTAT
34441532 CTGGTGGC-CTGCCACATATTCTGT-T
1 CTGGTGGCACTGCCACATATTCTGTAT
*
34441557 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-ATAT-TCTGTAT
* * * *
34441586 CTGGTGACTCTGTCACATTTTCTGTAT
1 CTGGTGGCACTGCCACATATTCTGTAT
34441613 CTGG
1 CTGG
34441617 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
25 14 0.19
26 8 0.11
27 22 0.30
28 15 0.21
29 14 0.19
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCACTGCCACATATTCTGTAT
Found at i:34441602 original size:29 final size:27
Alignment explanation
Indices: 34441504--34441591 Score: 108
Period size: 25 Copynumber: 3.2 Consensus size: 27
34441494 AGGAAGCGTC
* *
34441504 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGC-CTGCCACAAAATATCTGTT
*
34441532 CTGGTGGCCTGCCAC-ATAT-TCTGTT
1 CTGGTGGCCTGCCACAAAATATCTGTT
34441557 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGC-CTGCCACAAAATATCTGT-T
34441586 CTGGTG
1 CTGGTG
34441592 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
25 14 0.27
26 9 0.17
27 9 0.17
28 13 0.25
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCCTGCCACAAAATATCTGTT
Found at i:34441618 original size:53 final size:51
Alignment explanation
Indices: 34441514--34441618 Score: 122
Period size: 53 Copynumber: 2.0 Consensus size: 51
34441504 CTGGTGGCTA
* *
34441514 TGCCACAAATTATCTGTTCTGGTGGCCTGCCACATATTCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACCTGCCACATATTCTGTTC--GTGGCAC
* *
34441567 TGCCACAAAATATCTGTATCTGGTGACTCTGTCACATTTTCTGTATC-TGGCA
1 TGCCACAAAATATCTGT-TCTGGTGAC-CTGCCACATATTCTGT-TCGTGGCA
34441619 GCCATGCTGC
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
53 21 0.47
54 8 0.18
55 14 0.31
56 2 0.04
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (51 bp):
TGCCACAAAATATCTGTTCTGGTGACCTGCCACATATTCTGTTCGTGGCAC
Found at i:34442698 original size:11 final size:10
Alignment explanation
Indices: 34442670--34442703 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
34442660 AAGCTGTAAG
34442670 TATTCTGAAT
1 TATTCTGAAT
*
34442680 TTTTCTGAAT
1 TATTCTGAAT
34442690 ATATTCTGAAT
1 -TATTCTGAAT
34442701 TAT
1 TAT
34442704 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:34447202 original size:31 final size:31
Alignment explanation
Indices: 34447164--34447225 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
34447154 TTAGACAGGA
34447164 TTCACGATGTTTTTCACGTCTCCATGTTAAG
1 TTCACGATGTTTTTCACGTCTCCATGTTAAG
34447195 TTCACGATGTTTTTCACGTCTCCATGTTAAG
1 TTCACGATGTTTTTCACGTCTCCATGTTAAG
34447226 GCGCTATCGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (31 bp):
TTCACGATGTTTTTCACGTCTCCATGTTAAG
Found at i:34449425 original size:29 final size:28
Alignment explanation
Indices: 34449341--34449428 Score: 103
Period size: 25 Copynumber: 3.2 Consensus size: 28
34449331 AGGAAGCGTC
*
34449341 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* *
34449369 CTGGTGGC-CTGCCAC-ATAT-TCTATT
1 CTGGTGGCACTGCCACAAAATATCTGTT
34449394 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
34449423 CTGGTG
1 CTGGTG
34449429 ACTGTCACAT
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
25 13 0.26
26 9 0.18
27 9 0.18
28 12 0.24
29 7 0.14
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:34449438 original size:53 final size:53
Alignment explanation
Indices: 34449341--34449443 Score: 138
Period size: 53 Copynumber: 1.9 Consensus size: 53
34449331 AGGAAGCGTC
* *
34449341 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCTGCCACATATTCTATT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGGACTGCCACATATTCTATT
* *
34449394 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGT-GACTGTCACATTTTCT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGGACTGCCACATATTCT
34449444 GTATCTGGCA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
52 1 0.02
53 37 0.84
54 6 0.14
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGGACTGCCACATATTCTATT
Found at i:34456300 original size:30 final size:30
Alignment explanation
Indices: 34456264--34456324 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
34456254 TTCCCGAGCC
34456264 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
34456294 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
34456324 T
1 T
34456325 GTATTAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Done.