Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 134 of 427
Found at i:36098401 original size:51 final size:51
Alignment explanation
Indices: 36098194--36098411 Score: 179
Period size: 51 Copynumber: 4.3 Consensus size: 51
36098184 GTTGTGAGAA
* * * *
36098194 CACATGTGTAGTACTATGTGCAAGCTACTTTGTGTTTAAA-ATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAAGCTACTATGTG-TAAAAGATAGTTTT-GGT
* * * * ** * *
36098246 CACGTTTGTAGTACTAAGTGCATGCTACTACGTGTACTAGAT-GGTTAGGT
1 CACATGTGTAGTACTAAGTGCAAGCTACTATGTGTAAAAGATAGTTTTGGT
* * * *** * ***
36098296 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCCAT
1 CACATGTGTAGTACTAAGTGCAAGCTACTATGTGTAAAAGATAGTTTTGGT
*
36098347 CACATGTGTGGTACTAAGTGCAAGCTACTATGTGTAAAAGATAGTTTTGGT
1 CACATGTGTAGTACTAAGTGCAAGCTACTATGTGTAAAAGATAGTTTTGGT
* *
36098398 CACAAGTGTGGTAC
1 CACATGTGTAGTAC
36098412 CATGTGAAGG
Statistics
Matches: 129, Mismatches: 35, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
50 37 0.29
51 62 0.48
52 30 0.23
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAAGCTACTATGTGTAAAAGATAGTTTTGGT
Found at i:36102381 original size:46 final size:46
Alignment explanation
Indices: 36102329--36102419 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
36102319 AGTAGCTACA
36102329 TAGGAATCAAATT-GCTAAAAGATAATATCTAATAATAATATCCTAT
1 TAGGAATCAAATTCG-TAAAAGATAATATCTAATAATAATATCCTAT
36102375 TAGGAATCAAATTCGTAAAAGATAATATCTAATAATAATATCCTA
1 TAGGAATCAAATTCGTAAAAGATAATATCTAATAATAATATCCTA
36102420 ACATTATTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
46 43 0.98
47 1 0.02
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.32
Consensus pattern (46 bp):
TAGGAATCAAATTCGTAAAAGATAATATCTAATAATAATATCCTAT
Found at i:36103761 original size:16 final size:16
Alignment explanation
Indices: 36103728--36103761 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36103718 TAGTTGTTAT
**
36103728 TTGAGAACAACTCTTG
1 TTGAGAACAACTAATG
36103744 TTGAGAACAACTAATG
1 TTGAGAACAACTAATG
36103760 TT
1 TT
36103762 TAAAACGACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (16 bp):
TTGAGAACAACTAATG
Found at i:36105980 original size:24 final size:24
Alignment explanation
Indices: 36105948--36105998 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
36105938 AGTTCTAGAC
36105948 ATTGTGTCAAAAAGAGCATATATA
1 ATTGTGTCAAAAAGAGCATATATA
*
36105972 ATTGTGTCAAAAAGAGTATATATA
1 ATTGTGTCAAAAAGAGCATATATA
36105996 ATT
1 ATT
36105999 AGAACCTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (24 bp):
ATTGTGTCAAAAAGAGCATATATA
Found at i:36106074 original size:25 final size:27
Alignment explanation
Indices: 36106018--36106088 Score: 89
Period size: 25 Copynumber: 2.8 Consensus size: 27
36106008 AATGAGATTG
*
36106018 TTTAAAAAAAT-ATT-TTTTTAAATTT
1 TTTAAAAATATAATTATTTTTAAATTT
36106043 TTATAAAAATATAATTATTTTT-AA-TT
1 TT-TAAAAATATAATTATTTTTAAATTT
36106069 TTTAAAAATATAA-TATTTTT
1 TTTAAAAATATAATTATTTTT
36106089 CGTAATTCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
24 7 0.17
25 13 0.31
26 12 0.29
27 5 0.12
28 5 0.12
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (27 bp):
TTTAAAAATATAATTATTTTTAAATTT
Found at i:36106115 original size:11 final size:11
Alignment explanation
Indices: 36106099--36106136 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
36106089 CGTAATTCTT
36106099 AATTTTTTTGA
1 AATTTTTTTGA
36106110 AATTTTTTT-A
1 AATTTTTTTGA
36106120 TAA-TTTTTTGA
1 -AATTTTTTTGA
36106131 AATTTT
1 AATTTT
36106137 ATAAAAATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (11 bp):
AATTTTTTTGA
Found at i:36106117 original size:10 final size:10
Alignment explanation
Indices: 36106102--36106136 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
36106092 AATTCTTAAT
36106102 TTTTTTGAAA
1 TTTTTTGAAA
*
36106112 TTTTTTTATAA
1 TTTTTTGA-AA
36106123 TTTTTTGAAA
1 TTTTTTGAAA
36106133 TTTT
1 TTTT
36106137 ATAAAAATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (10 bp):
TTTTTTGAAA
Found at i:36117709 original size:22 final size:22
Alignment explanation
Indices: 36117681--36117803 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
36117671 ATGTGTATAT
36117681 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
36117703 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
*
36117727 TATGTGATAAGGCCGAATGGCCT
1 -ATGTGATAAGGCCGAATGGCCA
* * *
36117750 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
36117774 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
36117797 ATGTGAT
1 ATGTGAT
36117804 GAACGTGAGC
Statistics
Matches: 73, Mismatches: 14, Indels: 28
0.63 0.12 0.24
Matches are distributed among these distances:
22 23 0.32
23 17 0.23
24 17 0.23
25 16 0.22
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:36117710 original size:47 final size:47
Alignment explanation
Indices: 36117656--36117887 Score: 358
Period size: 47 Copynumber: 5.0 Consensus size: 47
36117646 TTAGGATTTT
** *
36117656 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36117703 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
36117750 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36117797 ATGTGATGAACGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
36117844 ATGTGGTGAATATGAACATGCATATATGTGGTAAAG-CGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
36117888 TAGTGTGAAA
Statistics
Matches: 170, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 8 0.05
47 162 0.95
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:36117852 original size:25 final size:25
Alignment explanation
Indices: 36117777--36117852 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
36117767 ATGCATATAT
36117777 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
36117802 ATGA-ACGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
36117824 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
36117849 GTGA
1 GTGA
36117853 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.22
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:36118194 original size:37 final size:37
Alignment explanation
Indices: 36118049--36118193 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
36118039 GGAAATATAT
*
36118049 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
36118086 TCCGGGTAAGACCCGATGACTATGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
36118123 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
36118160 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
36118194 TCGTCTGAGC
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36119535 original size:40 final size:40
Alignment explanation
Indices: 36119480--36119674 Score: 286
Period size: 40 Copynumber: 4.9 Consensus size: 40
36119470 GAGAATTGAG
*
36119480 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTTCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
36119520 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * * *
36119560 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* *
36119600 AGTGATATATCCGGGCT-AATACCGAAGTGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* *
36119639 AGTGATATATCTGGACTAAAT-CCGAAGAGCATTCGT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGT
36119675 CGGGCTAAGT
Statistics
Matches: 140, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 47 0.34
40 93 0.66
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
Found at i:36119613 original size:80 final size:78
Alignment explanation
Indices: 36119480--36120175 Score: 720
Period size: 80 Copynumber: 8.9 Consensus size: 78
36119470 GAGAATTGAG
* * *
36119480 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTTCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGACTAAAT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAA-TACCG
36119545 AAGAGCATTCGTGCT
64 AAGAGCATTCGTGCT
* *
36119560 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAATACCGA
1 AGTGATATATCCGGACTAAATC-CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAATACCGA
*
36119625 AGTGCATTCGTGCT
65 AGAGCATTCGTGCT
* * * * * *
36119639 AGTGATATATCTGGACTAAATCCGAAGAGCATTCGT-C--GGGCTA-AGTCC---CGAAGAGC-A
1 AGTGATATATCCGGACTAAATCCGAAGAGCATTCGTGCTAGTGATATA-TCCGGGCTAATACCGA
* *
36119696 TTAGTGC--TAGTG--
65 --AGAGCATTCGTGCT
* * **** *** *
36119708 A-TG-TAT-CCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGA
1 AGTGATATATCCGGACTAAATCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCT-AATACCGA
36119770 AGAGCATTCGTGCT
65 AGAGCATTCGTGCT
* * * * *
36119784 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
1 AGTGATATATCCGGACTAAAT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAA-TACCG
36119849 AAGAGCATTCGTGCT
64 AAGAGCATTCGTGCT
* * *
36119864 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCG
1 AGTGATATATCCGGACTAAAT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCT-AATACCG
36119929 AAGAGCATTCGTGCT
64 AAGAGCATTCGTGCT
* * * * *
36119944 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
1 AGTGATATATCCGGACTAAAT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAA-TACCG
36120009 AAGAGCATTCGTGCT
64 AAGAGCATTCGTGCT
* * * * *
36120024 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
1 AGTGATATATCCGGACTAAAT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAA-TACCG
36120089 AAGAGCATTCGTGCT
64 AAGAGCATTCGTGCT
* * * *
36120104 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGACTAAAT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAA-TACCG
36120169 AAGAGCA
64 AAGAGCA
36120176 ATCATGCTGG
Statistics
Matches: 538, Mismatches: 54, Indels: 48
0.84 0.08 0.08
Matches are distributed among these distances:
66 18 0.03
67 4 0.01
68 2 0.00
69 8 0.01
70 1 0.00
71 5 0.01
72 10 0.02
73 8 0.01
74 6 0.01
75 7 0.01
76 1 0.00
77 3 0.01
78 17 0.03
79 45 0.08
80 401 0.75
81 2 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
AGTGATATATCCGGACTAAATCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAATACCGAA
GAGCATTCGTGCT
Found at i:36119720 original size:65 final size:65
Alignment explanation
Indices: 36119611--36119740 Score: 190
Period size: 65 Copynumber: 2.0 Consensus size: 65
36119601 GTGATATATC
* * *
36119611 CGGGCTAATACCGAAGTGCATTCGTGCTAGTGATATATCTGGACTAAAT-CCGAAGAGCATTCGT
1 CGGGCTAATACCGAAGAGCATTAGTGCTAGTGATATATCCGGACTAAATCCCGAAGAGCATTCGT
* * *
36119675 CGGGCTAAGTCCCGAAGAGCATTAGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCG
1 CGGGCTAA-TACCGAAGAGCATTAGTGCTAGTGATATATCCGGACTAAATCCCGAAGAGCATTCG
36119740 T
65 T
36119741 GCTAGTGATA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
64 8 0.14
65 35 0.60
66 15 0.26
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (65 bp):
CGGGCTAATACCGAAGAGCATTAGTGCTAGTGATATATCCGGACTAAATCCCGAAGAGCATTCGT
Found at i:36119734 original size:40 final size:40
Alignment explanation
Indices: 36119679--36120175 Score: 886
Period size: 40 Copynumber: 12.4 Consensus size: 40
36119669 ATTCGTCGGG
*
36119679 CTAAGTCCCGAAGAGCATTAGTGCTAGTGATGTATCCGGA
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
* *
36119719 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGG
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
* * *
36119759 CTAAATCCCGAAGAGCATTCGTGCTAGTGATATATCCGGG
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
36119799 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
36119839 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
* *
36119879 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGG
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
* * *
36119919 CTAAATCCCGAAGAGCATTCGTGCTAGTGATATATCCGGG
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
36119959 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
36119999 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
36120039 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
36120079 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
*
36120119 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGG
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
36120159 CTAAGTCCCGAAGAGCA
1 CTAAGTCCCGAAGAGCA
36120176 ATCATGCTGG
Statistics
Matches: 443, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 443 1.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
Found at i:36123636 original size:47 final size:47
Alignment explanation
Indices: 36123533--36123857 Score: 501
Period size: 47 Copynumber: 7.0 Consensus size: 47
36123523 TTAGGATTTT
** *
36123533 ATGTGATGAATGT-AATGTGTATATATGTGATAAGGCCG-ATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
36123578 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36123625 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36123672 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
**
36123719 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCTAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36123766 ATGTGATGAACGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
36123813 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGTCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
36123858 TAGTGTGAAA
Statistics
Matches: 256, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 13 0.05
46 22 0.09
47 221 0.86
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:36124139 original size:72 final size:73
Alignment explanation
Indices: 36124022--36124162 Score: 239
Period size: 72 Copynumber: 1.9 Consensus size: 73
36124012 AAATATATTC
* *
36124022 CGGGTGAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGAC-TAGTGTGGA
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTTAGTGTGGA
36124086 GATTATGT
66 GATTATGT
* *
36124094 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTTCGTGTGGA
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTTAGTGTGGA
36124159 GATT
66 GATT
36124163 TCGTCTGAGC
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
72 52 0.81
73 12 0.19
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (73 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTTAGTGTGGA
GATTATGT
Found at i:36124163 original size:37 final size:37
Alignment explanation
Indices: 36124020--36124162 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
36124010 GGAAATATAT
*
36124020 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
36124057 TCCGGGTAAGACCCGATGACTA-GTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
36124093 T-CGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
36124129 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
36124163 TCGTCTGAGC
Statistics
Matches: 100, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
35 20 0.20
36 29 0.29
37 51 0.51
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36129412 original size:28 final size:29
Alignment explanation
Indices: 36129372--36129441 Score: 108
Period size: 29 Copynumber: 2.4 Consensus size: 29
36129362 AATTGTACAA
*
36129372 CACTAAGTGTGCGAGTTTG-AT-TATATAG
1 CACTAAGTGTGCGAG-CTGAATGTATATAG
36129400 CACTAAGTGTGCGAGCTGAATGTATATAG
1 CACTAAGTGTGCGAGCTGAATGTATATAG
36129429 CACTAAGTGTGCG
1 CACTAAGTGTGCG
36129442 GATTCACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (29 bp):
CACTAAGTGTGCGAGCTGAATGTATATAG
Found at i:36133633 original size:40 final size:40
Alignment explanation
Indices: 36133588--36133755 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
36133578 CGGAATATAA
36133588 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
36133628 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
36133668 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
36133708 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
36133748 CCGGATAT
1 CCGGATAT
36133756 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:36133738 original size:80 final size:80
Alignment explanation
Indices: 36133604--36133753 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
36133594 ATAACCACGT
* *
36133604 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
36133669 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
36133684 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
36133747 CCCGGAT
64 CCCGGAT
36133754 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:36141630 original size:40 final size:40
Alignment explanation
Indices: 36141585--36141752 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
36141575 CGGAATATAA
36141585 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
36141625 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
36141665 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
36141705 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
36141745 CCGGATAT
1 CCGGATAT
36141753 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:36141735 original size:80 final size:80
Alignment explanation
Indices: 36141601--36141750 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
36141591 ATAACCACGT
* *
36141601 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
36141666 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
36141681 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
36141744 CCCGGAT
64 CCCGGAT
36141751 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:36147781 original size:48 final size:48
Alignment explanation
Indices: 36147706--36147933 Score: 263
Period size: 48 Copynumber: 4.9 Consensus size: 48
36147696 CACATTGTAG
* * * * *
36147706 GATGCCAATGCCATATCCCGGATATGGTCCTACATGAGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
*
36147754 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* *
36147802 GATTCCAATGCCATGTCCCAGACATGATCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* ** *
36147850 GATGCCAAT---A-G-CCCAG-CTATGGTCTTACACGAAATTACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
* *
36147893 GATGCCTAA-GCCATGTCCTAGATATGGTCTTACATGGGATC
1 GATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATC
36147934 GCACATAACC
Statistics
Matches: 151, Mismatches: 21, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
42 1 0.01
43 31 0.21
44 3 0.02
45 1 0.01
46 1 0.01
47 1 0.01
48 113 0.75
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:36147924 original size:91 final size:94
Alignment explanation
Indices: 36147706--36147933 Score: 268
Period size: 91 Copynumber: 2.4 Consensus size: 94
36147696 CACATTGTAG
* * * *
36147706 GATGCCAATGCCATATCCCGGATATGGTCCTACATGAGATCACATATCGATGCCAATGCCATGTC
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATCGATGCCAAT--CATGTC
* * **
36147771 CTAGACATGGTCTTACATGGGATCACATATC
64 CCAGACATGGTCTTACACGAAATCACATATC
* * *
36147802 GATTCCAATGCCATGTCCCAGACATGATCTTACATGGGATCACATATCGATGCCAAT-A-G-CCC
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATCGATGCCAATCATGTCCC
*
36147864 AG-CTATGGTCTTACACGAAATTACATATC
66 AGAC-ATGGTCTTACACGAAATCACATATC
*
36147893 GATGCCTAA-GCCATGTCCTAGATATGGTCTTACATGGGATC
1 GATGCC-AATGCCATGTCCCAGATATGGTCTTACATGGGATC
36147934 GCACATAACC
Statistics
Matches: 114, Mismatches: 16, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
90 1 0.01
91 59 0.52
92 3 0.03
93 1 0.01
96 50 0.44
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (94 bp):
GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATCGATGCCAATCATGTCCC
AGACATGGTCTTACACGAAATCACATATC
Found at i:36153525 original size:39 final size:39
Alignment explanation
Indices: 36153425--36153609 Score: 196
Period size: 40 Copynumber: 4.7 Consensus size: 39
36153415 TCGAATGATG
* * * *
36153425 TCCGAGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
* *
36153465 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTGCTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
36153504 TCCCGGGCTAAG-CCCGAAGGCATTTGTGCGGGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* *
36153544 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
36153584 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36153610 AATGAGTAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 34 0.28
40 80 0.66
41 8 0.07
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:36153631 original size:79 final size:77
Alignment explanation
Indices: 36153459--36153642 Score: 183
Period size: 79 Copynumber: 2.3 Consensus size: 77
36153449 GTGCTAAGTG
* * * *
36153459 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTAATCCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
** *
36153524 CATTTGTGCGGGTT
64 CATTTGAACGAGTT
* *
36153538 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACT-ATAACCGGGCTATGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTATGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAA
*
36153602 GGCATTTGAATGAG-T
62 GGCATTTGAACGAGTT
*
36153617 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
36153643 TACGTGATTT
Statistics
Matches: 87, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 28 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
TTTGAACGAGTT
Found at i:36156692 original size:46 final size:46
Alignment explanation
Indices: 36156637--36156817 Score: 242
Period size: 46 Copynumber: 3.9 Consensus size: 46
36156627 TAGGATGGTT
36156637 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
36156683 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
36156729 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
36156776 GAACACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36156818 GCGGGTTACA
Statistics
Matches: 117, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 72 0.62
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:36156798 original size:93 final size:93
Alignment explanation
Indices: 36156639--36156809 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
36156629 GGATGGTTGA
* **
36156639 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
36156704 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
36156732 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
36156797 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
36156810 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36159787 original size:15 final size:15
Alignment explanation
Indices: 36159767--36159835 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
36159757 GTATCTTGGG
36159767 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
36159782 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
36159797 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
36159812 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
36159827 TTTCTTTAT
1 TTTCTTTAT
36159836 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:36159836 original size:30 final size:30
Alignment explanation
Indices: 36159758--36159845 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
36159748 CATAGTATCG
* * * *
36159758 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
36159788 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
36159818 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
36159846 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:36162268 original size:46 final size:46
Alignment explanation
Indices: 36162213--36162393 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
36162203 TAGGATGGTT
36162213 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
36162259 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
36162305 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
36162352 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36162394 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:36162374 original size:93 final size:93
Alignment explanation
Indices: 36162215--36162385 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
36162205 GGATGGTTGA
* *
36162215 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36162280 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
36162308 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36162373 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
36162386 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36171866 original size:40 final size:40
Alignment explanation
Indices: 36171782--36171966 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
36171772 TCGAATGATG
* *
36171782 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
36171821 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36171862 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
36171901 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36171940 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36171967 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:36171918 original size:79 final size:81
Alignment explanation
Indices: 36171782--36171964 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
36171772 TCGAATGATG
* *
36171782 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
36171846 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
36171861 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
36171923 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
36171941 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
36171965 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:36171988 original size:79 final size:79
Alignment explanation
Indices: 36171783--36171998 Score: 239
Period size: 79 Copynumber: 2.7 Consensus size: 79
36171773 CGAATGATGT
* *
36171783 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
*
36171846 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* *
36171863 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCATT
36171925 TGTGCGAGTTACT-ATAA
63 TGTGCGAGTTACTAAT-A
* ** *
36171942 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA-ATTCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGG
36171999 TACGTGATTC
Statistics
Matches: 116, Mismatches: 11, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
78 9 0.08
79 64 0.55
80 43 0.37
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:36177275 original size:41 final size:41
Alignment explanation
Indices: 36177230--36177347 Score: 107
Period size: 41 Copynumber: 3.1 Consensus size: 41
36177220 TGAAAGATAA
36177230 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * *
36177271 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGACA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
36177301 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
36177342 ATGTAG
1 ATGTAG
36177348 ACAAGAGAGC
Statistics
Matches: 56, Mismatches: 8, Indels: 26
0.62 0.09 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.14
31 10 0.18
32 1 0.02
33 3 0.05
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.05
39 1 0.02
40 10 0.18
41 14 0.25
42 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.29, T:0.20
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:36177286 original size:71 final size:71
Alignment explanation
Indices: 36177198--36177361 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
36177188 GAGATGTATC
*
36177198 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGACAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
36177263 AGGACA
66 AGGACA
36177269 CCATGTAGACAAGAGAGCTACGTGAAAGACAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGACAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
36177334 AGGACA
66 AGGACA
36177340 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
36177362 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.18
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGACAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:36182221 original size:40 final size:39
Alignment explanation
Indices: 36182135--36182315 Score: 154
Period size: 40 Copynumber: 4.5 Consensus size: 39
36182125 ATGATGTCCG
* * *
36182135 GGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGT-CTATATCC-
1 GGCTAAGTCC-AAAGGCATTTGTGC-GAGT-TACTAAATCCA
* *
36182174 GGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCA
1 GG-CTAAG-TCCAAAGGCATTTGTGCGAGTTACTAAATCCA
* * *
36182215 GGCTAAGCCCAAAGGCATTGGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCAAAGGCATTTGTGCGAGTTACTAAATCCA
* *
36182254 GGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGT-CCAAAGGCATTTGTGCGAGTTACTA-AATCCA
* *
36182294 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGT-CCAAAGGCATTTG
36182316 AATGAGTAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
39 36 0.30
40 71 0.59
41 14 0.12
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
GGCTAAGTCCAAAGGCATTTGTGCGAGTTACTAAATCCA
Found at i:36182232 original size:39 final size:40
Alignment explanation
Indices: 36182187--36182315 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
36182177 CTAAGATCCG
*
36182187 AAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAG-CCCA
1 AAGGCATTTGTGCGAGTTACTAAATCCAGGCTAAGTCCCA
* * *
36182226 AAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCA
1 AAGGCATTTGTGCGAGTTACTAAATCCAGGCTAAGTCCCA
* * *
36182266 AAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCG
1 AAGGCATTTGTGCGAGTTACTA-AATCCAGGCTAAGTCCCA
36182306 AAGGCATTTG
1 AAGGCATTTG
36182316 AATGAGTAGC
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 31 0.39
40 47 0.59
41 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTAAATCCAGGCTAAGTCCCA
Found at i:36182337 original size:79 final size:79
Alignment explanation
Indices: 36182187--36182338 Score: 175
Period size: 79 Copynumber: 1.9 Consensus size: 79
36182177 CTAAGATCCG
* **
36182187 AAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGCCCAAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAATC
36182252 CGGGTTAAGTCCCA
66 CGGGTTAAGTCCCA
* * * * * *
36182266 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGCTAT
1 AAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-CTAA
36182329 ATCC-GGTTAA
63 ATCCGGGTTAA
36182339 ATTCTGAAGG
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
78 2 0.03
79 37 0.61
80 22 0.36
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAATC
CGGGTTAAGTCCCA
Found at i:36186664 original size:18 final size:15
Alignment explanation
Indices: 36186625--36186656 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
36186615 AATTAAACTA
36186625 AATGCAATGATCCCT
1 AATGCAATGATCCCT
36186640 AATGCAATGATCCCT
1 AATGCAATGATCCCT
36186655 AA
1 AA
36186657 GTATGCAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (15 bp):
AATGCAATGATCCCT
Found at i:36188693 original size:12 final size:12
Alignment explanation
Indices: 36188676--36188700 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36188666 CATAAGCGTA
36188676 AATGGAAGGAGG
1 AATGGAAGGAGG
36188688 AATGGAAGGAGG
1 AATGGAAGGAGG
36188700 A
1 A
36188701 TCTTGTGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.48, T:0.08
Consensus pattern (12 bp):
AATGGAAGGAGG
Found at i:36191589 original size:26 final size:26
Alignment explanation
Indices: 36191542--36191592 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
36191532 CTCGCTGCAA
*
36191542 TCTGGTGGCTCGCCACATATATCTGT
1 TCTGGTGACTCGCCACATATATCTGT
*
36191568 TCTGGTGACTTCGTCACA-ATATCTG
1 TCTGGTGAC-TCGCCACATATATCTG
36191593 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (26 bp):
TCTGGTGACTCGCCACATATATCTGT
Found at i:36192936 original size:26 final size:25
Alignment explanation
Indices: 36192907--36192955 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
36192897 ACATTCTCTC
*
36192907 GAGCCATATATCAGGAATGCTTATAA
1 GAGCCATATAACAGGAA-GCTTATAA
*
36192933 GAGCCATGTAACAGGAAGCTTAT
1 GAGCCATATAACAGGAAGCTTAT
36192956 CCGAGCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.24
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTTATAA
Found at i:36192961 original size:25 final size:26
Alignment explanation
Indices: 36192906--36192961 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
36192896 AACATTCTCT
*
36192906 CGAGCCATATATCAGGAATGCTTATA
1 CGAGCCATATAACAGGAATGCTTATA
* * *
36192932 AGAGCCATGTAACAGGAA-GCTTATC
1 CGAGCCATATAACAGGAATGCTTATA
36192957 CGAGC
1 CGAGC
36192962 TAAATCAGGA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.21
Consensus pattern (26 bp):
CGAGCCATATAACAGGAATGCTTATA
Found at i:36193205 original size:65 final size:65
Alignment explanation
Indices: 36193114--36193263 Score: 185
Period size: 65 Copynumber: 2.3 Consensus size: 65
36193104 TGAGCCATAT
* * * * * *
36193114 CAGGACACTCATAAAGAGCTATGTTTGTGTCCACAATATATGTAGGATCACAACCGATC-GCATA
1 CAGGACGCTCACAAAGAGCTACGTTTGTGTCCACAACATATATAGGATCACAACCGATCAACA-A
36193178 A
65 A
* * **
36193179 CAGGATGCTCACAAAGAGTTACGTTTGTGTCTGCAACATATATAGGATCACAACCGATCAACAAA
1 CAGGACGCTCACAAAGAGCTACGTTTGTGTCCACAACATATATAGGATCACAACCGATCAACAAA
*
36193244 CAGGACGCTTACAAAGAGCT
1 CAGGACGCTCACAAAGAGCT
36193264 GCACTAGTCA
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
65 69 0.97
66 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (65 bp):
CAGGACGCTCACAAAGAGCTACGTTTGTGTCCACAACATATATAGGATCACAACCGATCAACAAA
Found at i:36202892 original size:39 final size:40
Alignment explanation
Indices: 36202779--36202934 Score: 181
Period size: 39 Copynumber: 4.0 Consensus size: 40
36202769 CTCGTTCAAA
* * ** * *
36202779 TGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
* * *
36202819 TGCCTTCGGGACTTAACCTGGATATCACAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
* *
36202859 TGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCACCAT
1 TGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
* *
36202898 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACA
1 TGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACA
36202935 TTCATACACA
Statistics
Matches: 98, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 57 0.58
40 41 0.42
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
Found at i:36202894 original size:79 final size:79
Alignment explanation
Indices: 36202779--36202934 Score: 197
Period size: 79 Copynumber: 2.0 Consensus size: 79
36202769 CTCGTTCAAA
* ** *
36202779 TGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCTGGATAT
1 TGCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGG-CTTAACCCGGATAT
36202844 CACAACTCGCACAAT
65 CACAACTCGCACAAT
* * * * * *
36202859 TGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCACCATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATC
*
36202923 ACAATTCGCACA
66 ACAACTCGCACA
36202935 TTCATACACA
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
78 24 0.37
79 31 0.48
80 10 0.15
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
TGCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATC
ACAACTCGCACAAT
Found at i:36208807 original size:47 final size:46
Alignment explanation
Indices: 36208607--36208876 Score: 156
Period size: 47 Copynumber: 5.8 Consensus size: 46
36208597 GGAAAAGTTA
* * * *
36208607 CCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTATATACGT-G
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACCCATA-AT-C-TCG
* * * * *
36208657 CTGATGCATGACCTAGACATGTCTTACACTAGCA--CA-ACTCTTAG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCACCCATAATC-TCG
* * * * * * **
36208701 CCGATGCGTGTCCCAGACACGTTTTACACTGGCTA-TCATCATCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC-ACCCATAATC-TCG
* ** *
36208748 CTGATGTGTGTCCCAGACATGTCTTACACTAGCACCCAT-CTCTCCG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCACCCATAATCT-CG
* * * * * *
36208794 CCGATGCCATGTCCCAAACATGGTCTTATACTGGCACTCATAATGTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACCCATAATCTCG
36208842 CCGATGCATGTCCCAGACATGTCTTACACTAGCAC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCAC
36208877 ACAAGAAATT
Statistics
Matches: 169, Mismatches: 42, Indels: 22
0.73 0.18 0.09
Matches are distributed among these distances:
43 2 0.01
44 28 0.17
45 2 0.01
46 25 0.15
47 58 0.34
48 35 0.21
49 14 0.08
50 5 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCACCCATAATCTCG
Found at i:36208863 original size:94 final size:93
Alignment explanation
Indices: 36208607--36208876 Score: 289
Period size: 94 Copynumber: 2.9 Consensus size: 93
36208597 GGAAAAGTTA
* * * * *
36208607 CCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTATATACGT-GCTGATGCATGACCT
1 CCGATGCCATGTCCCAGACATGGTCTTATACTGGCACTC--ATA-ATGTGGCTGATGCATGTCCC
*
36208671 AGACATGTCTTACACTAGCA-CAACTCTTAG
63 AGACATGTCTTACACTAGCACCAACTCTCAG
* * * * * * **
36208701 CCGATG-CGTGTCCCAGACA-CGTTTTACACTGGCTA-TCATCATCGAGGCTGATGTGTGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTATACTGGC-ACTCATAAT-GTGGCTGATGCATGTCCCA
* *
36208763 GACATGTCTTACACTAGCACCCATCTCTCCG
64 GACATGTCTTACACTAGCA-CCAACTCTCAG
* *
36208794 CCGATGCCATGTCCCAAACATGGTCTTATACTGGCACTCATAATGTGGCCGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTATACTGGCACTCATAATGTGGCTGATGCATGTCCCAGA
36208859 CATGTCTTACACTAGCAC
66 CATGTCTTACACTAGCAC
36208877 ACAAGAAATT
Statistics
Matches: 142, Mismatches: 26, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
89 1 0.01
90 3 0.02
91 31 0.22
92 12 0.08
93 26 0.18
94 52 0.37
95 17 0.12
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (93 bp):
CCGATGCCATGTCCCAGACATGGTCTTATACTGGCACTCATAATGTGGCTGATGCATGTCCCAGA
CATGTCTTACACTAGCACCAACTCTCAG
Found at i:36210654 original size:33 final size:33
Alignment explanation
Indices: 36210617--36210693 Score: 145
Period size: 33 Copynumber: 2.3 Consensus size: 33
36210607 GATTGGTAGA
*
36210617 TGAAATTCTTATTGTACGAACTTACTAAGCATT
1 TGAAATGCTTATTGTACGAACTTACTAAGCATT
36210650 TGAAATGCTTATTGTACGAACTTACTAAGCATT
1 TGAAATGCTTATTGTACGAACTTACTAAGCATT
36210683 TGAAATGCTTA
1 TGAAATGCTTA
36210694 CTCAATTTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (33 bp):
TGAAATGCTTATTGTACGAACTTACTAAGCATT
Found at i:36219979 original size:40 final size:39
Alignment explanation
Indices: 36219814--36219997 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
36219804 AAATTGAATG
* * *
36219814 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
36219854 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
36219894 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
36219934 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
36219973 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
36219998 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:36220022 original size:80 final size:81
Alignment explanation
Indices: 36219854--36220042 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
36219844 GCTGGAAATT
* * * *
36219854 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
36219919 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
36219935 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
36219998 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
36220014 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
36220043 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:36224640 original size:40 final size:39
Alignment explanation
Indices: 36224475--36224658 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
36224465 AAATTGAATG
* * *
36224475 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * *
36224515 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAATGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
36224555 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
* *
36224595 CTATCCGGGCTAAGACCCAAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
36224634 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
36224659 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 28, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
37 5 0.05
38 2 0.02
39 3 0.03
40 101 0.91
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:36224641 original size:80 final size:80
Alignment explanation
Indices: 36224519--36224667 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
36224509 GAAATTATAA
* * * *
36224519 CCGGGTTAAGACCCGAAGGCAATTGTGCTAATGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCAAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
36224584 TGCGAGTCATTCTAT
66 TGCGAGTCATTCTAT
* * * * * * *
36224599 CCGGGCTAAGACCCAAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCAAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTC
36224663 GTGCG
65 GTGCG
36224668 GGTTACCATA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGACCCAAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATTCTAT
Found at i:36224683 original size:80 final size:81
Alignment explanation
Indices: 36224515--36224686 Score: 179
Period size: 80 Copynumber: 2.1 Consensus size: 81
36224505 GCTGGAAATT
* * * *
36224515 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAATGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCAAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
36224580 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
36224596 -TATCCGGGCTAAGACCCAAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCAAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
36224659 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
36224675 ATAACCGGGCTA
1 ATAACCGGGCTA
36224687 TGTCCCGAAG
Statistics
Matches: 73, Mismatches: 16, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
79 2 0.03
80 71 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCAAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:36231934 original size:42 final size:40
Alignment explanation
Indices: 36231865--36231966 Score: 123
Period size: 42 Copynumber: 2.5 Consensus size: 40
36231855 AGCTTGGTCT
*
36231865 CGAAGGGCTTTTGAGCCAGTCTAATAACCGAACTTAGTTT
1 CGAAGGGCTTTTGAGCCAGTCTAATAACCGAACTTAGTTC
* * * *
36231905 TGAAGGGCTTTTTAGAGCCAGTGTCATAACCGGACTTAGTTC
1 CGAAGGGC-TTTT-GAGCCAGTCTAATAACCGAACTTAGTTC
* *
36231947 CGAAGGGCCTTCGAGCCAGT
1 CGAAGGGCTTTTGAGCCAGT
36231967 AGTCTAATCC
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
40 15 0.29
41 6 0.12
42 31 0.60
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
CGAAGGGCTTTTGAGCCAGTCTAATAACCGAACTTAGTTC
Found at i:36235366 original size:70 final size:71
Alignment explanation
Indices: 36235281--36235443 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
36235271 CGATTTGTCT
36235281 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA-TTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36235345 CTTTCA
66 CTTTCA
36235351 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36235416 CTTTCA
66 CTTTCA
36235422 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36235444 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 60 0.65
71 32 0.35
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:36235481 original size:71 final size:69
Alignment explanation
Indices: 36235281--36235477 Score: 247
Period size: 70 Copynumber: 2.8 Consensus size: 69
36235271 CGATTTGTCT
* * * *
36235281 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTATC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTATC
36235346 TTTCA
65 TTTCA
* * * *
36235351 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACA-TTAT
36235416 CTTTCA
64 CTTTCA
* *
36235422 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
36235478 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 61 0.51
71 35 0.29
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (69 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTATCT
TTCA
Found at i:36242472 original size:71 final size:71
Alignment explanation
Indices: 36242386--36242549 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
36242376 CGATTTGTCT
36242386 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36242451 CTTTCA
66 CTTTCA
36242457 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36242522 CTTTCA
66 CTTTCA
36242528 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36242550 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:36242587 original size:71 final size:70
Alignment explanation
Indices: 36242386--36242583 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
36242376 CGATTTGTCT
* * * *
36242386 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36242451 CTTTCA
65 CTTTCA
* * * *
36242457 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36242522 CTTTCA
65 CTTTCA
* *
36242528 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
36242584 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:36249675 original size:41 final size:40
Alignment explanation
Indices: 36249605--36249752 Score: 158
Period size: 41 Copynumber: 3.6 Consensus size: 40
36249595 GAGCTTGGTC
36249605 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAG-T
** * *
36249646 TCGAAGGTTTTTTAGAGCCAGTG-TCATAACCGGACTTAGT
1 TCGAAGGGCTTTT-GAGCCAGTGCTAATAACCGAACTTAGT
* * * *
36249686 TCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTTGGT
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGT
36249726 CTCGAAGGGCTTTTGAGCCAGTGCTAA
1 -TCGAAGGGCTTTTGAGCCAGTGCTAA
36249753 GAGTCAGACT
Statistics
Matches: 88, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
39 12 0.14
40 20 0.23
41 44 0.50
42 12 0.14
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
Found at i:36251059 original size:17 final size:19
Alignment explanation
Indices: 36250982--36251052 Score: 114
Period size: 17 Copynumber: 3.9 Consensus size: 19
36250972 ATAATCTTCA
36250982 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
36251001 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
36251018 ATGAT-T-CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
36251035 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
36251053 AGATATGATT
Statistics
Matches: 49, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 32 0.65
18 1 0.02
19 16 0.33
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:36251078 original size:22 final size:22
Alignment explanation
Indices: 36250982--36251075 Score: 70
Period size: 17 Copynumber: 4.8 Consensus size: 22
36250972 ATAATCTTCA
36250982 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
36251001 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
36251018 ATGAT-T-CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
36251035 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
36251057 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
36251076 GATTTAATTT
Statistics
Matches: 66, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 32 0.48
18 1 0.02
19 13 0.20
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:36251363 original size:17 final size:17
Alignment explanation
Indices: 36251339--36251373 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36251329 TGTTTCCCTG
*
36251339 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
36251357 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
36251374 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:36259584 original size:44 final size:44
Alignment explanation
Indices: 36259461--36259631 Score: 175
Period size: 44 Copynumber: 3.9 Consensus size: 44
36259451 ACTCTAAGAT
*
36259461 GATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCAAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAGTA
* * *
36259505 GATTTGACATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAGTA
* * * * * **
36259549 GATTTGGTGTCTTTGTACTGTCAGAGAATAAATCGAAGA-AACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAGTA
* ** *
36259592 GATTTGGCATCTCCATATTCGAT-AGAGAGCAGATCGAAGA
1 GATTTGGCGTCTCTGTATT-G-TCAGAGAGTAGATCGAAGA
36259632 CATAGCAGAT
Statistics
Matches: 102, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
43 15 0.15
44 86 0.84
45 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.29
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAGTA
Found at i:36259619 original size:88 final size:88
Alignment explanation
Indices: 36259461--36259631 Score: 211
Period size: 88 Copynumber: 1.9 Consensus size: 88
36259451 ACTCTAAGAT
* * * ** **
36259461 GATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCAAAGATAGTAGATTTGACATCTCTGTATTGT
1 GATTTGGCGTCTCTGTACTGTCAGAGAATAAATCAAAGATAACAGATTTGACATCTCCATATTGT
36259526 CAGAGAGCAGATCGAAGATAGTA
66 CAGAGAGCAGATCGAAGATAGTA
* * * *
36259549 GATTTGGTGTCTTTGTACTGTCAGAGAATAAATCGAAGA-AACAGATTTGGCATCTCCATATTCG
1 GATTTGGCGTCTCTGTACTGTCAGAGAATAAATCAAAGATAACAGATTTGACATCTCCATATT-G
36259613 AT-AGAGAGCAGATCGAAGA
65 -TCAGAGAGCAGATCGAAGA
36259632 CATAGCAGAT
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 18 0.26
88 51 0.73
89 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.29
Consensus pattern (88 bp):
GATTTGGCGTCTCTGTACTGTCAGAGAATAAATCAAAGATAACAGATTTGACATCTCCATATTGT
CAGAGAGCAGATCGAAGATAGTA
Found at i:36259823 original size:44 final size:44
Alignment explanation
Indices: 36259769--36259912 Score: 164
Period size: 44 Copynumber: 3.3 Consensus size: 44
36259759 AATCTAAGAT
* *
36259769 GATTTGGCGTCTCTGTATTGTTAGAGAGCAGATTAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* *
36259813 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* * * * * * * *
36259857 AATTTGGTGTCTCTGTACTATCAGAGAACAAATCGAAGA-AACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
*
36259900 GATTTGGCATCTC
1 GATTTGGCGTCTC
36259913 CATATTTGAC
Statistics
Matches: 85, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
43 12 0.14
44 73 0.86
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
Found at i:36259883 original size:308 final size:308
Alignment explanation
Indices: 36259319--36260123 Score: 1333
Period size: 308 Copynumber: 2.6 Consensus size: 308
36259309 GTAACAGGCT
* *
36259319 GAAGACATAGCAGATCTAACCTTCGAATGTTTTTGCATCGAACCAGATCCT-AGATGATTTGGCA
1 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGAT-CTAAGATGATTTGGCA
* * *
36259383 TCCTTGCATTTACAAGGAGCAGATTGAAGACATAGCATATTTGGCTTTCACGTGTTTACGCTGAA
65 TCCTTGCGTTTACAAGGAGCAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAA
* * *
36259448 GCAACTCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCAAAGATAGTAGATTTGAC
130 GCAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGAC
* * * *
36259513 ATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAGATTTGGTGTCTTTGTACTGTCAGAGAAT
195 ATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAAC
*
36259578 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGATAGAGAGCAGATC
260 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATC
*
36259627 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCAAAGCAGATCTAAGATGATTTGGCAT
1 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCTAAGATGATTTGGCAT
* * *
36259692 CCTTGCGTTTACAAGGAGCAGATCGAAGACATAGCAGGTTTGGCTTTCACATGTTTACACTGAAG
66 CCTTGCGTTTACAAGGAGCAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
* * * *
36259757 CAAATCTAAGATGATTTGGCGTCTCTGTATTGTTAGAGAGCAGATTAAAGATAGCAGATTTGGCG
131 CAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGACA
36259822 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACA
196 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACA
* * *
36259887 AATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGTAGATC
261 AATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATC
*
36259935 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCCAAGATGATTTGGCAT
1 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCTAAGATGATTTGGCAT
* *
36260000 CCTTGCGTTTACAAGGAGCAGATCAAAGATATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
66 CCTTGCGTTTACAAGGAGCAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
* *
36260065 CAAATCTAAGATGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCAAAAATAGCAGAT
131 CAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGAT
36260124 CGAAAATAGT
Statistics
Matches: 461, Mismatches: 35, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
307 2 0.00
308 459 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (308 bp):
GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCTAAGATGATTTGGCAT
CCTTGCGTTTACAAGGAGCAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
CAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGACA
TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACA
AATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATC
Found at i:36260122 original size:14 final size:14
Alignment explanation
Indices: 36260103--36260137 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
36260093 ATTGTCAGAG
36260103 AGCAGATCAAAAAT
1 AGCAGATCAAAAAT
*
36260117 AGCAGATCGAAAAT
1 AGCAGATCAAAAAT
*
36260131 AGTAGAT
1 AGCAGAT
36260138 TTGGTGTCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.51, C:0.11, G:0.20, T:0.17
Consensus pattern (14 bp):
AGCAGATCAAAAAT
Found at i:36260336 original size:278 final size:278
Alignment explanation
Indices: 36259839--36260391 Score: 935
Period size: 278 Copynumber: 2.0 Consensus size: 278
36259829 ATTGTCAGAG
* *
36259839 AGCAGATCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACAAATCGAAGAAACAGATT
1 AGCAGATCGAAAATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACAAATCAAAGAAACAGATT
* * *
36259904 TGGCATCTCCATATTTGACGGAGAGTAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTT
66 TGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTC
* * *
36259969 GCATCGAAGCAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCAAAGATATAG
131 ACATCGAAGCAGATCCAAGATGATTTGGAATCCTTGCGTTTACAAGGAGCAGATCAAAGACATAG
* *
36260034 CAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCGTCTCTATATTGTC
196 CAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTATACTGTC
* *
36260099 AGAGAGCAGATCAAAAAT
261 AGAGAACAAATCAAAAAT
* *
36260117 AGCAGATCGAAAATAGTAGATTTGGTGTCTCTGTACTGTCAGAGAACAAATCAAAGAAACAGATT
1 AGCAGATCGAAAATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACAAATCAAAGAAACAGATT
36260182 TGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTC
66 TGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTC
* * *
36260247 ACATCGAAGTAGATCCAAGATGATTTGGAATCCTTGCGTTTATAAGGAGCAGATCGAAGACATAG
131 ACATCGAAGCAGATCCAAGATGATTTGGAATCCTTGCGTTTACAAGGAGCAGATCAAAGACATAG
* *
36260312 CAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTC
196 CAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTATACTGTC
36260377 AGAGAACAAATCAAA
261 AGAGAACAAATCAAA
36260392 GAAACAGATT
Statistics
Matches: 256, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
278 256 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (278 bp):
AGCAGATCGAAAATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACAAATCAAAGAAACAGATT
TGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTC
ACATCGAAGCAGATCCAAGATGATTTGGAATCCTTGCGTTTACAAGGAGCAGATCAAAGACATAG
CAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTATACTGTC
AGAGAACAAATCAAAAAT
Found at i:36260506 original size:78 final size:78
Alignment explanation
Indices: 36260398--36260614 Score: 326
Period size: 78 Copynumber: 2.8 Consensus size: 78
36260388 CAAAGAAACA
* ** * *
36260398 GATTTGGTATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCAGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCAGACCTTCATTGAA
36260463 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* **
36260476 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCAGACCTTCATTGAA
*
36260541 GCAGATCTAAGAT
66 GCAGATCCAAGAT
* * *
36260554 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCAGACCTTCAT
36260615 GTGTTTACAT
Statistics
Matches: 125, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 125 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCAGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:36260707 original size:45 final size:45
Alignment explanation
Indices: 36260637--36260827 Score: 260
Period size: 45 Copynumber: 4.3 Consensus size: 45
36260627 AAGTAGATCC
*
36260637 AAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
* * * *
36260682 GAGATAACAGATTTGGCATCTCTGTATTAGACAGGGAGCAGATTG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
*
36260727 AAGA-AGCAGATTTGGCATCTCTGTATTAGACGGGGAG-AAGATCG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAA-ATCG
* * * *
36260771 AAGATAACAGATTTGGGATCTCTGTATTAGACGGTGAGCAGATCA
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
*
36260816 AAGATAGCAGAT
1 AAGATAACAGAT
36260828 ATTGCCTTCC
Statistics
Matches: 127, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
43 1 0.01
44 38 0.30
45 87 0.69
46 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.25
Consensus pattern (45 bp):
AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
Found at i:36260795 original size:89 final size:90
Alignment explanation
Indices: 36260631--36260827 Score: 294
Period size: 89 Copynumber: 2.2 Consensus size: 90
36260621 ACATCGAAGT
* *
36260631 AGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATT
1 AGATCAAAGATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATT
36260695 TGGCATCTCTGTATTAGACAGG-GAGC
65 TGGCATCTCTGTATTAGAC-GGTGAGC
**
36260721 AGATTGAAGA-AGCAGATTTGGCATCTCTGTATTAGACGGGGAG-AAGATCGAAGATAACAGATT
1 AGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAA-ATCGAAGATAACAGATT
*
36260784 TGGGATCTCTGTATTAGACGGTGAGC
65 TGGCATCTCTGTATTAGACGGTGAGC
36260810 AGATCAAAGATAGCAGAT
1 AGATCAAAGATAGCAGAT
36260828 ATTGCCTTCC
Statistics
Matches: 97, Mismatches: 6, Indels: 8
0.87 0.05 0.07
Matches are distributed among these distances:
88 4 0.04
89 77 0.79
90 16 0.16
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.24
Consensus pattern (90 bp):
AGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTT
GGCATCTCTGTATTAGACGGTGAGC
Found at i:36261274 original size:17 final size:19
Alignment explanation
Indices: 36261177--36261267 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
36261167 ATAATCTTCA
36261177 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
36261196 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
36261215 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
36261232 ATGAT-TGCAATGTTAGAT
1 ATGATATGCAATCTTAGAT
36261250 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
36261268 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.22
19 36 0.54
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:36261293 original size:22 final size:22
Alignment explanation
Indices: 36261177--36261290 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
36261167 ATAATCTTCA
36261177 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
36261196 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
36261215 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
36261232 ATGAT-TGCAATGTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
36261250 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
36261272 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
36261291 GATTTAATTT
Statistics
Matches: 84, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
17 16 0.19
18 15 0.18
19 33 0.39
22 8 0.10
23 12 0.14
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:36261592 original size:17 final size:19
Alignment explanation
Indices: 36261558--36261594 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
36261548 TGTTTCCCTG
*
36261558 ATTTTTTTGTATATATTTT
1 ATTTTTTTGAATATATTTT
36261577 ATTTTTTT-AATA-ATTTT
1 ATTTTTTTGAATATATTTT
36261594 A
1 A
36261595 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 3 0.18
19 8 0.47
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (19 bp):
ATTTTTTTGAATATATTTT
Found at i:36264164 original size:42 final size:43
Alignment explanation
Indices: 36264069--36264223 Score: 178
Period size: 41 Copynumber: 3.7 Consensus size: 43
36264059 TATTTGAAAA
* * *
36264069 AAACGCTGCTAAAGAACA-TGACCTTTAGCAGCACTTTTCCCAC
1 AAACGCCGCTAAAGATCAGTGACCTTTAGC-GCGCTTTTCCCAC
**
36264112 AAACATCGCTAAAGATCAGT-ACCTTTAGCGGCGC-TTTCCCAC
1 AAACGCCGCTAAAGATCAGTGACCTTTAGC-GCGCTTTTCCCAC
* *
36264154 AAACGCCGCTAAAGAT-AATGACCTTTAAC-CGCTTTTCCCAC
1 AAACGCCGCTAAAGATCAGTGACCTTTAGCGCGCTTTTCCCAC
*
36264195 AAACGCCGCTAAAGATCA-AGACCTTTAGC
1 AAACGCCGCTAAAGATCAGTGACCTTTAGC
36264224 AGGATCACGA
Statistics
Matches: 96, Mismatches: 12, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
40 3 0.03
41 35 0.36
42 31 0.32
43 26 0.27
44 1 0.01
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCAGTGACCTTTAGCGCGCTTTTCCCAC
Found at i:36264203 original size:41 final size:40
Alignment explanation
Indices: 36264102--36264221 Score: 152
Period size: 42 Copynumber: 2.9 Consensus size: 40
36264092 TTTAGCAGCA
** * *
36264102 CTTTTCCCACAAACATCGCTAAAGATCAGTACCTTTAGCGGCG
1 CTTTTCCCACAAACGCCGCTAAAGATAAG-ACCTTTAAC--CG
36264145 C-TTTCCCACAAACGCCGCTAAAGATAATGACCTTTAACCG
1 CTTTTCCCACAAACGCCGCTAAAGATAA-GACCTTTAACCG
36264185 CTTTTCCCACAAACGCCGCTAAAGATCAAGACCTTTA
1 CTTTTCCCACAAACGCCGCTAAAGAT-AAGACCTTTA
36264222 GCAGGATCAC
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
40 3 0.04
41 32 0.46
42 33 0.47
43 2 0.03
ACGTcount: A:0.31, C:0.32, G:0.13, T:0.24
Consensus pattern (40 bp):
CTTTTCCCACAAACGCCGCTAAAGATAAGACCTTTAACCG
Found at i:36264210 original size:83 final size:84
Alignment explanation
Indices: 36264069--36264223 Score: 217
Period size: 83 Copynumber: 1.8 Consensus size: 84
36264059 TATTTGAAAA
* * *
36264069 AAACGCTGCTAAAGAACATGACCTTTAGCAGCACTTTTCCCACAAACATCGCTAAAGATC-AGTA
1 AAACGCCGCTAAAGAACATGACCTTTA-CACCACTTTTCCCACAAACACCGCTAAAGATCAAG-A
36264133 CCTTTAGCGGCGCTTTCCCAC
64 CCTTTAGCGGCGCTTTCCCAC
* *
36264154 AAACGCCGCTAAAGATA-ATGACCTTTA-ACCGCTTTTCCCACAAACGCCGCTAAAGATCAAGAC
1 AAACGCCGCTAAAGA-ACATGACCTTTACACCACTTTTCCCACAAACACCGCTAAAGATCAAGAC
36264217 CTTTAGC
65 CTTTAGC
36264224 AGGATCACGA
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
83 36 0.57
84 2 0.03
85 24 0.38
86 1 0.02
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (84 bp):
AAACGCCGCTAAAGAACATGACCTTTACACCACTTTTCCCACAAACACCGCTAAAGATCAAGACC
TTTAGCGGCGCTTTCCCAC
Found at i:36265766 original size:15 final size:16
Alignment explanation
Indices: 36265740--36265770 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
36265730 TCTCTCTTGC
36265740 TTTTAGATCATATATA
1 TTTTAGATCATATATA
36265756 TTTTA-ATCATATATA
1 TTTTAGATCATATATA
36265771 AGACAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAGATCATATATA
Found at i:36269471 original size:19 final size:18
Alignment explanation
Indices: 36269431--36269470 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
36269421 TATTACTTAA
*
36269431 TTTTAAATTTTTTTTCAT
1 TTTTAAATATTTTTTCAT
36269449 TTTTAACATATTTTTT-AT
1 TTTTAA-ATATTTTTTCAT
36269467 TTTT
1 TTTT
36269471 TCTTTCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTAAATATTTTTTCAT
Found at i:36269589 original size:8 final size:8
Alignment explanation
Indices: 36269578--36269662 Score: 70
Period size: 7 Copynumber: 10.6 Consensus size: 8
36269568 ATATTTAATA
36269578 TTTAATTT
1 TTTAATTT
36269586 TTTAATTT
1 TTTAATTT
36269594 TTTAA-TT
1 TTTAATTT
36269601 TTT-ATTT
1 TTTAATTT
36269608 TTT-ATTT
1 TTTAATTT
36269615 TTT-ATTT
1 TTTAATTT
*
36269622 TTAAATTT
1 TTTAATTT
**
36269630 TAAAAATTT
1 T-TTAATTT
36269639 TTTGAATATT
1 TTT-AAT-TT
*
36269649 TTTATAATT
1 TTTA-ATTT
36269658 TTTAA
1 TTTAA
36269663 ATTAACATAT
Statistics
Matches: 66, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
6 1 0.02
7 23 0.35
8 19 0.29
9 17 0.26
10 6 0.09
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.69
Consensus pattern (8 bp):
TTTAATTT
Found at i:36269589 original size:15 final size:16
Alignment explanation
Indices: 36269571--36269630 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 16
36269561 ATATTAAATA
36269571 TTTAA-TATTTAATTT
1 TTTAATTATTTAATTT
*
36269586 TTTAATTTTTTAA-TT
1 TTTAATTATTTAATTT
*
36269601 TTT-ATT-TTTTATTT
1 TTTAATTATTTAATTT
36269615 TTT-ATT-TTTAAATTT
1 TTTAATTATTT-AATTT
36269630 T
1 T
36269631 AAAAATTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
13 4 0.10
14 14 0.36
15 15 0.38
16 6 0.15
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTAATTATTTAATTT
Found at i:36269594 original size:7 final size:7
Alignment explanation
Indices: 36269571--36269632 Score: 63
Period size: 7 Copynumber: 8.7 Consensus size: 7
36269561 ATATTAAATA
*
36269571 TTTAATA
1 TTTAATT
36269578 TTTAATTT
1 TTTAA-TT
36269586 TTTAATTT
1 TTTAA-TT
36269594 TTTAATT
1 TTTAATT
36269601 TTT-ATT
1 TTTAATT
*
36269607 TTTTATT
1 TTTAATT
*
36269614 TTTTATT
1 TTTAATT
*
36269621 TTTAAAT
1 TTTAATT
36269628 TTTAA
1 TTTAA
36269633 AAATTTTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
6 6 0.12
7 30 0.60
8 14 0.28
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTAATT
Found at i:36269665 original size:8 final size:8
Alignment explanation
Indices: 36269564--36269665 Score: 54
Period size: 7 Copynumber: 12.9 Consensus size: 8
36269554 AACTAAAATA
*
36269564 TTAAATAT
1 TTAAATTT
*
36269572 TT-AATAT
1 TTAAATTT
36269579 TT-AATTT
1 TTAAATTT
*
36269586 TTTAATTT
1 TTAAATTT
*
36269594 TTTAATTT
1 TTAAATTT
36269602 TT--ATTT
1 TTAAATTT
*
36269608 TT-TATTT
1 TTAAATTT
*
36269615 TT-TATTT
1 TTAAATTT
36269622 TTAAATTT
1 TTAAATTT
*
36269630 TAAAAATTTT
1 T-TAAA-TTT
36269640 TTGAATATTT
1 TT-AA-ATTT
36269650 TTATAATTT
1 TTA-AATTT
36269659 TTAAATT
1 TTAAATT
36269666 AACATATAAA
Statistics
Matches: 82, Mismatches: 4, Indels: 16
0.80 0.04 0.16
Matches are distributed among these distances:
6 6 0.07
7 26 0.32
8 26 0.32
9 11 0.13
10 12 0.15
11 1 0.01
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67
Consensus pattern (8 bp):
TTAAATTT
Found at i:36270407 original size:14 final size:14
Alignment explanation
Indices: 36270372--36270424 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 14
36270362 ATAATCTCTA
* *
36270372 AACCCTAAAAACCT
1 AACCCTTAAACCCT
* *
36270386 AACTCTTAACCCCT
1 AACCCTTAAACCCT
*
36270400 AAGCCTTAAACCCT
1 AACCCTTAAACCCT
36270414 AACCCTTAAAC
1 AACCCTTAAAC
36270425 AATAAACCAT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.40, C:0.38, G:0.02, T:0.21
Consensus pattern (14 bp):
AACCCTTAAACCCT
Found at i:36270497 original size:7 final size:7
Alignment explanation
Indices: 36270485--36270510 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
36270475 TCATACACTT
36270485 TAAACCC
1 TAAACCC
36270492 TAAACCC
1 TAAACCC
36270499 TAAACCC
1 TAAACCC
36270506 TAAAC
1 TAAAC
36270511 TATAATGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCC
Found at i:36270637 original size:15 final size:14
Alignment explanation
Indices: 36270634--36270762 Score: 54
Period size: 14 Copynumber: 9.3 Consensus size: 14
36270624 TCATAATCCC
*
36270634 TAAACCCTAAACCC
1 TAAACCCTAAACCA
* * *
36270648 TAAATCTTAAAACA
1 TAAACCCTAAACCA
*
36270662 TAAACCCTGAACCA
1 TAAACCCTAAACCA
*
36270676 TGAACCCCTAACACC-
1 T-AAACCCTAA-ACCA
*
36270691 TAAACCTTAAACC-
1 TAAACCCTAAACCA
**
36270704 CCAACCCTTAAACC-
1 TAAACCC-TAAACCA
36270718 ---ACCCGTAAACCA
1 TAAACCC-TAAACCA
*
36270730 TAATCCCTAAACCCA
1 TAAACCCTAAA-CCA
* * *
36270745 TAATCCATAAACCT
1 TAAACCCTAAACCA
36270759 TAAA
1 TAAA
36270763 ATAGTAACTC
Statistics
Matches: 87, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
11 10 0.11
13 7 0.08
14 43 0.49
15 24 0.28
16 3 0.03
ACGTcount: A:0.43, C:0.36, G:0.02, T:0.19
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:36270643 original size:7 final size:7
Alignment explanation
Indices: 36270610--36270717 Score: 58
Period size: 7 Copynumber: 15.0 Consensus size: 7
36270600 ATTAATTAAT
36270610 CTAAACAC
1 CTAAAC-C
36270618 CTAAACTC
1 CTAAAC-C
* *
36270626 ATAATCC
1 CTAAACC
36270633 CTAAACC
1 CTAAACC
36270640 CTAAACC
1 CTAAACC
*
36270647 CTAAATC
1 CTAAACC
* *
36270654 TTAAAAC
1 CTAAACC
*
36270661 ATAAACC
1 CTAAACC
*
36270668 CTGAACC
1 CTAAACC
* *
36270675 ATGAACCC
1 CT-AAACC
36270683 CT-AACAC
1 CTAAAC-C
36270690 CTAAACC
1 CTAAACC
*
36270697 TTAAACC
1 CTAAACC
*
36270704 C-CAACC
1 CTAAACC
36270710 CTTAAACC
1 C-TAAACC
36270718 ACCCGTAAAC
Statistics
Matches: 74, Mismatches: 21, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
6 7 0.09
7 45 0.61
8 22 0.30
ACGTcount: A:0.43, C:0.37, G:0.02, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:36270762 original size:22 final size:22
Alignment explanation
Indices: 36270718--36270762 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
36270708 CCCTTAAACC
* *
36270718 ACCCGTAAACCATAATCCCTAA
1 ACCCATAAACCATAAACCCTAA
* *
36270740 ACCCATAATCCATAAACCTTAA
1 ACCCATAAACCATAAACCCTAA
36270762 A
1 A
36270763 ATAGTAACTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.33, G:0.02, T:0.20
Consensus pattern (22 bp):
ACCCATAAACCATAAACCCTAA
Found at i:36271108 original size:40 final size:40
Alignment explanation
Indices: 36271064--36271152 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 40
36271054 TTTCATTAAA
*
36271064 CGCCGCTAAAGATCG-AGCAT-TAGTGGCATTTCTCAAAAAG
1 CGCCGCTAAAGAT-GTA-CATATAGCGGCATTTCTCAAAAAG
* * *
36271104 CGCCGCTAAAGGTGTACATATAGCGGCGTTTCTTAAAAAG
1 CGCCGCTAAAGATGTACATATAGCGGCATTTCTCAAAAAG
36271144 CGCCGCTAA
1 CGCCGCTAA
36271153 TACTTGATCT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
39 4 0.09
40 39 0.91
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (40 bp):
CGCCGCTAAAGATGTACATATAGCGGCATTTCTCAAAAAG
Found at i:36271306 original size:40 final size:40
Alignment explanation
Indices: 36271247--36271349 Score: 113
Period size: 40 Copynumber: 2.6 Consensus size: 40
36271237 TTTTGCAGTA
* * *
36271247 TTTTTCAAAAAGCGTCGCTAAAGGTGTA-CTTATAGCGGCG
1 TTTTTTAAAAAGCGCCGCTAAAGCTGTATCTT-TAGCGGCG
* * *
36271287 TTTTTTAAAAAGAGCCGCTAATA-CTTTATCTTTAGTGGCG
1 TTTTTTAAAAAGCGCCGCTAA-AGCTGTATCTTTAGCGGCG
36271327 -TTTTTAAAAAGCGCCGCTAAAGC
1 TTTTTTAAAAAGCGCCGCTAAAGC
36271350 CACTAAAAGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
38 1 0.02
39 20 0.38
40 28 0.53
41 4 0.08
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (40 bp):
TTTTTTAAAAAGCGCCGCTAAAGCTGTATCTTTAGCGGCG
Found at i:36271396 original size:155 final size:155
Alignment explanation
Indices: 36271090--36271486 Score: 523
Period size: 155 Copynumber: 2.6 Consensus size: 155
36271080 GCATTAGTGG
* * * * *
36271090 CATTTCTCAAAAAGCGCCGCTAAAGGTGTACATATAGCGGCGTTTCTTAAAAAGCGCCGCTAATA
1 CATTTTTCAAAAAGCGACGCTAAAGGTGTACTTATAGCGGCGTTTTTTAAAAAGAGCCGCTAATA
*
36271155 CTTGATCTTTAGCGGTGTTTTTAAAAAGTGCCGCTAAAGCCACTAAAAGCTCAATACAAAAACAA
66 CTTGATCTTTAGCGGTGTTTTTAAAAAGCGCCGCTAAAGCCACTAAAAGCTCAATACAAAAACAA
* *
36271220 TGGAGTTTTGCAAAAAATTTTGCAG
131 CGGAGTTTTGCAAAAAATTTTGCAA
* *
36271245 TATTTTTCAAAAAGCGTCGCTAAAGGTGTACTTATAGCGGCGTTTTTTAAAAAGAGCCGCTAATA
1 CATTTTTCAAAAAGCGACGCTAAAGGTGTACTTATAGCGGCGTTTTTTAAAAAGAGCCGCTAATA
* * * * **
36271310 CTTTATCTTTAGTGGCGTTTTTAAAAAGCGCCGCTAAAGCCACTAAAAGTTCAATAC-AAAATGA
66 CTTGATCTTTAGCGGTGTTTTTAAAAAGCGCCGCTAAAGCCACTAAAAGCTCAATACAAAAACAA
**
36271374 CGGAGTTTTGCAAAATTCTTTTGCAA
131 CGGAGTTTTGCAAAA-AATTTTGCAA
* * * * *
36271400 CGTTTTTCAAAAAAC-ACTGCTAAAGGTGTA-TATATAGAGGCATTTTTAAAAAAGCA-CCGCTA
1 CATTTTTCAAAAAGCGAC-GCTAAAGGTGTACT-TATAGCGGCGTTTTTTAAAAAG-AGCCGCTA
36271462 ATACTTGATCTTTAGCGGTGTTTTT
63 ATACTTGATCTTTAGCGGTGTTTTT
36271487 TGTAAAACGC
Statistics
Matches: 211, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
154 21 0.10
155 189 0.90
156 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (155 bp):
CATTTTTCAAAAAGCGACGCTAAAGGTGTACTTATAGCGGCGTTTTTTAAAAAGAGCCGCTAATA
CTTGATCTTTAGCGGTGTTTTTAAAAAGCGCCGCTAAAGCCACTAAAAGCTCAATACAAAAACAA
CGGAGTTTTGCAAAAAATTTTGCAA
Found at i:36274546 original size:60 final size:60
Alignment explanation
Indices: 36274446--36274584 Score: 176
Period size: 60 Copynumber: 2.3 Consensus size: 60
36274436 AACTGTGTTA
* *
36274446 ATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCTAGATTAATACTG
1 ATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCAGATTAATACTG
* * *
36274506 ATATGGGCTAGGCCCAATATA-CTCTGA-TACTGTAA-GGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATATCTC-GACT--TGTAATAGGGCTACGGCCCAGATTAATACTG
36274566 ATATGGGCTAGGGCCCAAT
1 ATATGGGCTA-GGCCCAAT
36274585 TAACACTAAT
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 4 0.06
60 53 0.76
61 13 0.19
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCAGATTAATACTG
Found at i:36275927 original size:26 final size:26
Alignment explanation
Indices: 36275880--36275930 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
36275870 CCGTTTGGCC
*
36275880 CCTAGCCCAAAACTCATTTTCTAACG
1 CCTAGCCCAAAACTCATCTTCTAACG
36275906 CCTAGCCCAAAAC-CTATCTTCTAAC
1 CCTAGCCCAAAACTC-ATCTTCTAAC
36275931 CCACAAAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.37, G:0.06, T:0.25
Consensus pattern (26 bp):
CCTAGCCCAAAACTCATCTTCTAACG
Found at i:36277284 original size:2 final size:2
Alignment explanation
Indices: 36277277--36277317 Score: 55
Period size: 2 Copynumber: 20.0 Consensus size: 2
36277267 ACATTATACC
* *
36277277 AT AT AT AT AT AT TT AT AA AT AT CAT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT
36277318 TTAATACATT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
2 32 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:36278981 original size:27 final size:27
Alignment explanation
Indices: 36278941--36279227 Score: 355
Period size: 27 Copynumber: 10.6 Consensus size: 27
36278931 ATCTCATATT
*
36278941 TGTAGGCTAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
36278968 TATAGGGTAGAATTACCGAAATACCCT
1 TGTAGGGTAGAATTACCGAAATACCCC
* * * *
36278995 TATAAGGTAGAATTACTGAAATATCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
*
36279022 TGTAAGGTAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
36279049 TGTAGGGTAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
*
36279076 -GTTTGGGTAGAATTACCGAAATACCCC
1 TG-TAGGGTAGAATTACCGAAATACCCC
*
36279103 TCTAGGGTAGAATTACCGAAATACCTCC
1 TGTAGGGTAGAATTACCGAAATACC-CC
* *
36279131 T-TTGGGTAG-ATTACTGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
36279156 TCTAGGGTAGAATTACTGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
* * *
36279183 TGTAGGGTAGAGTTACCGAGATACCCT
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
36279210 TGTGGGGTAAAAATTACC
1 TGTAGGGT-AGAATTACC
36279228 ATTTTTCCCC
Statistics
Matches: 229, Mismatches: 25, Indels: 11
0.86 0.09 0.04
Matches are distributed among these distances:
25 3 0.01
26 21 0.09
27 195 0.85
28 10 0.04
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (27 bp):
TGTAGGGTAGAATTACCGAAATACCCC
Found at i:36279498 original size:28 final size:27
Alignment explanation
Indices: 36279451--36279540 Score: 119
Period size: 28 Copynumber: 3.3 Consensus size: 27
36279441 TGGAGGAAGC
*
36279451 GTTCCGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
36279478 GTTTCTGTTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCACAAATATCT
* *
36279506 GTTCTGGTGGCTCTGCCAC-AATATTT
1 GTTCTGGTGGCTATGCCACAAATATCT
36279532 GTATCTGGT
1 GT-TCTGGT
36279541 AACTCTGTCA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 8 0.14
27 23 0.41
28 25 0.45
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:36279522 original size:27 final size:26
Alignment explanation
Indices: 36279451--36279561 Score: 114
Period size: 27 Copynumber: 4.1 Consensus size: 26
36279441 TGGAGGAAGC
*
36279451 GTTCCGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
36279478 GTTTCTGTTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
* *
36279506 GTTCTGGTGGCTCTGCCACAATATTT
1 GTTCTGGTGGCTATGCCACAATATCT
** * *
36279532 GTATCTGGTAACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
36279559 GTT
1 GTT
36279562 GACCGATCGA
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 9 0.12
27 39 0.53
28 25 0.34
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:36279739 original size:78 final size:78
Alignment explanation
Indices: 36279567--36279732 Score: 251
Period size: 78 Copynumber: 2.1 Consensus size: 78
36279557 CTGTTGACCG
* * *
36279567 ATCGATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTATGGGCTTCGTACCGA
1 ATCGATGGCTGAGTGCCGATCATGTTACCAAAGGCTGTGTACCATTATTATAGGCTTCGTACCGA
36279632 TTATAGACCCGTT
66 TTATAGACCCGTT
* * * * *
36279645 ATCGATGGCTGAGTGCCGATCATGTTATCAAAGGCTGTGTACCGTTATTGTAGGCTTCGTGCTGA
1 ATCGATGGCTGAGTGCCGATCATGTTACCAAAGGCTGTGTACCATTATTATAGGCTTCGTACCGA
*
36279710 TTATAGACCTGTT
66 TTATAGACCCGTT
36279723 ATCGATGGCT
1 ATCGATGGCT
36279733 TTGTGCCACG
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (78 bp):
ATCGATGGCTGAGTGCCGATCATGTTACCAAAGGCTGTGTACCATTATTATAGGCTTCGTACCGA
TTATAGACCCGTT
Found at i:36279810 original size:27 final size:28
Alignment explanation
Indices: 36279754--36279829 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 28
36279744 ATTCTGTTAA
* * *
36279754 GTGGCTTTGCCACATTATCTG-ATTCTG
1 GTGGCTCTGCCACAATATCTGTATTCAG
36279781 GTGGCTCTGCCACAATATCTGTA-TCAG
1 GTGGCTCTGCCACAATATCTGTATTCAG
* *
36279808 GTGACTCTGTCACAATATCTGT
1 GTGGCTCTGCCACAATATCTGT
36279830 TTTGGCAGCC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 42 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (28 bp):
GTGGCTCTGCCACAATATCTGTATTCAG
Found at i:36279961 original size:6 final size:6
Alignment explanation
Indices: 36279952--36280064 Score: 79
Period size: 6 Copynumber: 18.3 Consensus size: 6
36279942 TTGCATTCAC
* * * * *
36279952 ATTCTG ATTCTG ATTCTG TTTCCTG ATACTG ATTCCG ATTCTG CCA-CCTA
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG --ATTCTG
* * *
36280002 ATTCTG ATTCTG ATTCT- ATCACTGG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT-TCT-G ATTCTG ATTCTG ATTCTG ATTCTG
36280051 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
36280065 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 16, Indels: 18
0.71 0.14 0.16
Matches are distributed among these distances:
5 4 0.05
6 66 0.80
7 9 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:36279983 original size:25 final size:25
Alignment explanation
Indices: 36279952--36280043 Score: 91
Period size: 25 Copynumber: 3.7 Consensus size: 25
36279942 TTGCATTCAC
*
36279952 ATTCTGATTCTGATTCTGTTTCCTG
1 ATTCTGATTCTGATTCTGTATCCTG
* * * *
36279977 ATACTGATTCCGATTCTGCCA-CCTA
1 ATTCTGATTCTGATTCTG-TATCCTG
36280002 ATTCTGATTCTGATTC--TATCACTGG
1 ATTCTGATTCTGATTCTGTATC-CT-G
36280027 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
36280044 CATTTTGATT
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
22 1 0.02
23 1 0.02
24 2 0.04
25 49 0.92
ACGTcount: A:0.18, C:0.23, G:0.14, T:0.45
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTATCCTG
Found at i:36281740 original size:16 final size:15
Alignment explanation
Indices: 36281713--36281745 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
36281703 TTTGTAATAA
36281713 AATATATAAATAAAT
1 AATATATAAATAAAT
36281728 AATATAGTAAATAAAT
1 AATATA-TAAATAAAT
36281744 AA
1 AA
36281746 GCAAAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (15 bp):
AATATATAAATAAAT
Found at i:36282349 original size:3 final size:3
Alignment explanation
Indices: 36282337--36282372 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
36282327 GAGTGAAAGT
36282337 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
36282373 ACTAATTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:36286833 original size:41 final size:42
Alignment explanation
Indices: 36286733--36286870 Score: 131
Period size: 42 Copynumber: 3.3 Consensus size: 42
36286723 TGAGTTTACA
* * * * *
36286733 TGTAAGACCATATCTGAGATATGGCATC-ATTATTAGATTTCG
1 TGTAAGACCATAGCTGGGACATGGCATCGA-TATGAGATATCG
36286775 TGTAAGACCAT-GTCTGGGACATGGCATCGATATGAGA-ATCG
1 TGTAAGACCATAG-CTGGGACATGGCATCGATATGAGATATCG
* ** *
36286816 TGTAAGACCATAGCTGGG-CTATAGGCATCGATATGTGATCCCA
1 TGTAAGACCATAGCTGGGAC-AT-GGCATCGATATGAGATATCG
36286859 TGTAAGACCATA
1 TGTAAGACCATA
36286871 TTTGGGTATG
Statistics
Matches: 81, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
40 1 0.01
41 21 0.26
42 45 0.56
43 14 0.17
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATAGCTGGGACATGGCATCGATATGAGATATCG
Found at i:36290266 original size:15 final size:15
Alignment explanation
Indices: 36290246--36290278 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
36290236 ATGAAGGATG
36290246 AGGGATAATGGATAA
1 AGGGATAATGGATAA
36290261 AGGGATAATGGATAA
1 AGGGATAATGGATAA
36290276 AGG
1 AGG
36290279 AATGAGGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.36, T:0.18
Consensus pattern (15 bp):
AGGGATAATGGATAA
Found at i:36293356 original size:18 final size:17
Alignment explanation
Indices: 36293333--36293366 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
36293323 TAGCTGTGCC
36293333 GTTTTCTCTTCTGTATTA
1 GTTTTCTCTTCT-TATTA
36293351 GTTTTCTCTTCTTATT
1 GTTTTCTCTTCTTATT
36293367 TTCTTCCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (17 bp):
GTTTTCTCTTCTTATTA
Found at i:36294595 original size:20 final size:20
Alignment explanation
Indices: 36294570--36294620 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
36294560 ATTTTGATAA
*
36294570 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
36294590 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
*
36294610 ACATGAGATGT
1 ACATGACATGT
36294621 TCATAAATGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:36294833 original size:23 final size:24
Alignment explanation
Indices: 36294666--36294853 Score: 269
Period size: 23 Copynumber: 8.0 Consensus size: 24
36294656 GAGGAAGTGC
36294666 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36294690 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36294713 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
36294736 -AAAGGGCTCATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
36294759 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
36294783 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
36294807 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
36294830 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
36294854 ATGATAAAGC
Statistics
Matches: 153, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
23 84 0.55
24 61 0.40
25 8 0.05
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:36295082 original size:31 final size:31
Alignment explanation
Indices: 36295047--36295110 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36295037 CGTTTACAGT
36295047 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
36295078 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36295109 AA
1 AA
36295111 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36301473 original size:31 final size:31
Alignment explanation
Indices: 36301450--36301523 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
36301440 ATAGTGAATC
**
36301450 CGCACACTTAGTGCTATATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATATGAAGCT
36301481 CGCACACTTAGTGCTATATA-ATCA--AA-CT
1 CGCACACTTAGTGCTATATATAT-ATGAAGCT
36301509 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36301524 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 17 0.41
29 1 0.02
30 2 0.05
31 21 0.51
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (31 bp):
CGCACACTTAGTGCTATATATATATGAAGCT
Found at i:36301545 original size:30 final size:29
Alignment explanation
Indices: 36301449--36301552 Score: 111
Period size: 28 Copynumber: 3.5 Consensus size: 29
36301439 TATAGTGAAT
* *
36301449 CCGCACACTTAGTGCTATATATATATTCAGC
1 CCGCACACTTAGTGCTATATA-AT-TTAAAC
* *
36301480 TCGCACACTTAGTGCTATATAA-TCAAAC
1 CCGCACACTTAGTGCTATATAATTTAAAC
* * *
36301508 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATAA-TTTAAAC
36301538 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
36301553 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
28 23 0.37
30 20 0.32
31 20 0.32
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATATAATTTAAAC
Found at i:36307422 original size:27 final size:29
Alignment explanation
Indices: 36307392--36307507 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
36307382 AACGCAAGAG
*
36307392 TATATA-GTGAATC-CGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
* **
36307419 TATATATTTTCAGCTCGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
* **
36307448 TATATAATTTTCAGCTCGCACACTTAGTGC
1 TATAT-ATGTGAAGCTCGCACACTTAGTGC
* ** *
36307478 TATATATTTTCAGTTCGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
36307507 T
1 T
36307508 GTACAATTTT
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
27 6 0.07
28 3 0.04
29 43 0.53
30 29 0.36
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (29 bp):
TATATATGTGAAGCTCGCACACTTAGTGC
Found at i:36307460 original size:30 final size:29
Alignment explanation
Indices: 36307405--36307507 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
36307395 ATAGTGAATC
36307405 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
36307434 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
36307464 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
36307493 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36307508 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:36307481 original size:59 final size:60
Alignment explanation
Indices: 36307404--36307537 Score: 207
Period size: 59 Copynumber: 2.2 Consensus size: 60
36307394 TATAGTGAAT
* * *
36307404 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TTTTCAGC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
* * *
36307463 TCGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
36307523 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
36307538 CAATCTTGTC
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
59 47 0.70
60 20 0.30
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (60 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
Found at i:36316550 original size:43 final size:43
Alignment explanation
Indices: 36316486--36316586 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 43
36316476 CCCAAATACA
* * *
36316486 GTCTTACATGGAAT-TTCATATCAATGCTAATAGCCCAGCTATG
1 GTCTTACACGAAATCTTCATATCAATG-TAATAGCCCAGATATG
* * * *
36316529 GTCTTACACGAAATCTT-ATATCGATGTCATATCTCAGATATG
1 GTCTTACACGAAATCTTCATATCAATGTAATAGCCCAGATATG
36316571 GTCTTACACGAAATCT
1 GTCTTACACGAAATCT
36316587 CAACTAACCC
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 28 0.56
43 20 0.40
44 2 0.04
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.34
Consensus pattern (43 bp):
GTCTTACACGAAATCTTCATATCAATGTAATAGCCCAGATATG
Found at i:36324241 original size:40 final size:40
Alignment explanation
Indices: 36324175--36324318 Score: 130
Period size: 40 Copynumber: 3.6 Consensus size: 40
36324165 AAATTGAATG
* * *
36324175 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
36324214 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ** *
36324254 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
* *
36324294 CTATCCAGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
36324319 TTTGTGCACA
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 16 0.18
40 71 0.82
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Done.