Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 137 of 427
Found at i:36943767 original size:20 final size:20
Alignment explanation
Indices: 36943742--36943801 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
36943732 TATGATTACC
36943742 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
36943762 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
36943782 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
36943802 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:36945112 original size:27 final size:27
Alignment explanation
Indices: 36945050--36945114 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
36945040 GGGCATATTC
36945050 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
36945077 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
**
36945104 GTGTTTTTACC
1 GTCATTTTACC
36945115 TTTTAGAGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:36945198 original size:27 final size:27
Alignment explanation
Indices: 36945168--36945370 Score: 115
Period size: 27 Copynumber: 7.4 Consensus size: 27
36945158 GTAAATCAAC
*
36945168 AAACCAAAGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
36945195 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
36945221 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
** ** **
36945251 AAA-TTAGAGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTGT
** * ***
36945278 AAATTAAGGGTTTTTCAGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
36945305 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* * *** *
36945332 AAATCGAGGGTAAAACAGTAATTCTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
36945359 AAATCAAGGGTA
1 AAACCAAGGGTA
36945371 AAATAGTAAT
Statistics
Matches: 136, Mismatches: 32, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
26 3 0.02
27 105 0.77
28 10 0.07
29 17 0.12
30 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.37
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:36945351 original size:54 final size:55
Alignment explanation
Indices: 36945293--36945408 Score: 137
Period size: 54 Copynumber: 2.1 Consensus size: 55
36945283 AAGGGTTTTT
*** * * *
36945293 CAGTAATTTC-ACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAA
1 CAGTAATTTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAA
** *
36945347 CAGTAA-TTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAA
1 CAGTAATTTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAA
36945401 CAGTAATT
1 CAGTAATT
36945409 CAGTAAATCG
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
53 3 0.06
54 47 0.92
55 1 0.02
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.30
Consensus pattern (55 bp):
CAGTAATTTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAA
Found at i:36945371 original size:27 final size:27
Alignment explanation
Indices: 36945322--36945687 Score: 408
Period size: 27 Copynumber: 13.6 Consensus size: 27
36945312 GGGTATTTTA
* * *
36945322 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
**
36945349 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
36945376 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
36945403 GTAATTCAGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
36945430 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * * *
36945457 ATAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
36945484 GTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
36945511 GTAATTCTGTAAGTCGAGGGTAAGACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
36945538 ATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
36945565 GTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
36945592 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
36945619 ATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* ***
36945646 GTAATTATGTAAATTTGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
36945673 GTAATTCTGTAAATC
1 GTAATTCTGTAAATC
36945688 GGGGTACTTT
Statistics
Matches: 292, Mismatches: 47, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 292 1.00
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCAAGGGTAAAACG
Found at i:36945729 original size:27 final size:26
Alignment explanation
Indices: 36945699--36945788 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 26
36945689 GGGTACTTTA
36945699 GTAATTTTACAAGTCGAAGGTATTTCG
1 GTAATTTTACAA-TCGAAGGTATTTCG
* * *
36945726 GTAAATTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCG
* * *
36945753 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATCGAA-GGTATTTCG
36945780 GTAATTTTA
1 GTAATTTTA
36945789 GTAAACTAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
26 4 0.08
27 45 0.88
28 2 0.04
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCG
Found at i:36945775 original size:54 final size:53
Alignment explanation
Indices: 36945683--36945788 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 53
36945673 GTAATTCTGT
*
36945683 AAATCGGGGTACTTTAGTAATTTTACAAGTCGAAGGTATTTCGGTAAATTTAC
1 AAATCGGGGTACTTTAGTAATTTTACAAGACGAAGGTATTTCGGTAAATTTAC
* * *
36945736 AAATCGAGGGTA-TTTCAGTATTTTTACAA-ACTAAGGGTATTTCGGTAATTTTA
1 AAATCG-GGGTACTTT-AGTAATTTTACAAGACGAA-GGTATTTCGGTAAATTTA
36945789 GTAAACTAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
53 12 0.26
54 34 0.74
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (53 bp):
AAATCGGGGTACTTTAGTAATTTTACAAGACGAAGGTATTTCGGTAAATTTAC
Found at i:36959468 original size:3 final size:3
Alignment explanation
Indices: 36959460--36959583 Score: 248
Period size: 3 Copynumber: 41.3 Consensus size: 3
36959450 GAATTTGATT
36959460 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
36959508 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
36959556 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
36959584 ATAAGCCAAT
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 121 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:36963641 original size:43 final size:42
Alignment explanation
Indices: 36963502--36963641 Score: 108
Period size: 42 Copynumber: 3.3 Consensus size: 42
36963492 CATAGGATTC
* * * *
36963502 CGATATGTGATTTTGTGTAAGACCAC-ATCTGGATGTTGGCAT
1 CGATATTTGATTTTGTGTAAGACC-CTGTCTGGACGATGGCAT
* * * * *
36963544 TGA-ATTGAGATTTACGTGTAAGACCATGTCTGGGAC-ATCGACAT
1 CGATATT-TGATTT-TGTGTAAGACCCTGTCT-GGACGAT-GGCAT
*
36963588 C-ATAATTGATTTTGTGTAAGACCCTGTCTAGGACGATGGCAT
1 CGATATTTGATTTTGTGTAAGACCCTGTCT-GGACGATGGCAT
36963630 CGATATTTGATT
1 CGATATTTGATT
36963642 ACATGTAAGC
Statistics
Matches: 73, Mismatches: 17, Indels: 15
0.70 0.16 0.14
Matches are distributed among these distances:
41 2 0.03
42 31 0.42
43 31 0.42
44 9 0.12
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.34
Consensus pattern (42 bp):
CGATATTTGATTTTGTGTAAGACCCTGTCTGGACGATGGCAT
Found at i:36966899 original size:17 final size:16
Alignment explanation
Indices: 36966862--36966899 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
36966852 AAAAACCCGA
36966862 AAAAGAAAATATAAAT
1 AAAAGAAAATATAAAT
*
36966878 AAAAGCAAAATATATAT
1 AAAAG-AAAATATAAAT
36966895 AAAAG
1 AAAAG
36966900 GGGACAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (16 bp):
AAAAGAAAATATAAAT
Found at i:36978122 original size:13 final size:13
Alignment explanation
Indices: 36978104--36978129 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36978094 TGTATTGGTT
36978104 TTAATATGATTTG
1 TTAATATGATTTG
36978117 TTAATATGATTTG
1 TTAATATGATTTG
36978130 AAATGTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAATATGATTTG
Found at i:36982665 original size:50 final size:50
Alignment explanation
Indices: 36982588--36982813 Score: 216
Period size: 48 Copynumber: 4.6 Consensus size: 50
36982578 GTAAGATGTG
* * * *
36982588 GATGCCATG-TCCTAGACACGGTCTTACA-TAGGCTCTTATATATTGGTGCC
1 GATGCCATGTTCC-AAACATGGTCTTACACTA-GCTCTCATATATCGGTGCC
* * * * *
36982638 AATGCCATGTTCCAAACATGGCCTTACATTAGC-C-CACATGTCGAG-GCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATCG-GTGCC
* ** *
36982686 GATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATATA--AATGCT
1 GATGCCATGTTCC-AAACATGGTCTTACACTAGCTCTCATATATCGGTGCC
* *
36982734 GATGCCATGTTCCAAACATGGTCTTCCACTAGCTCTCATATATCGGTGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATCGGTGCC
*
36982784 GATGCCACGTTCCAAACATGGTCTTACACT
1 GATGCCATGTTCCAAACATGGTCTTACACT
36982814 GTAACGCCCC
Statistics
Matches: 143, Mismatches: 23, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
47 3 0.02
48 71 0.50
49 6 0.04
50 58 0.41
51 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (50 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATCGGTGCC
Found at i:36982788 original size:98 final size:97
Alignment explanation
Indices: 36982588--36982813 Score: 246
Period size: 98 Copynumber: 2.3 Consensus size: 97
36982578 GTAAGATGTG
* * * *
36982588 GATGCCATGTCCTAGACACGGTCTTACA-TAGGCTCTTATATATTGGTGCCAATGCCATGTTCCA
1 GATGCCATGTCCTAGACATGGTCTTACACTAGGCTCTCATATAATGCTG-C-ATGCCATGTTCCA
* *
36982652 AACATGGCCTTACATTAGCCCACATGTCGAGGCC
64 AACATGGCCTTACACTAGCCCACATATCGAGGCC
36982686 GATGCCATGTCCTAGACATGGTCTTACACTA-GCTCTCATATAAATGCTG-ATGCCATGTTCCAA
1 GATGCCATGTCCTAGACATGGTCTTACACTAGGCTCTCATAT-AATGCTGCATGCCATGTTCCAA
* * * *
36982749 ACATGGTCTTCCACTAGCTCTCATATATCG-GTGCT
65 ACATGGCCTTACACTAGC-C-CACATATCGAG-GCC
* *
36982784 GATGCCACGTTCC-AAACATGGTCTTACACT
1 GATGCCATG-TCCTAGACATGGTCTTACACT
36982814 GTAACGCCCC
Statistics
Matches: 110, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
96 29 0.26
97 2 0.02
98 69 0.63
99 10 0.09
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (97 bp):
GATGCCATGTCCTAGACATGGTCTTACACTAGGCTCTCATATAATGCTGCATGCCATGTTCCAAA
CATGGCCTTACACTAGCCCACATATCGAGGCC
Found at i:36985108 original size:48 final size:48
Alignment explanation
Indices: 36984959--36985131 Score: 166
Period size: 48 Copynumber: 3.6 Consensus size: 48
36984949 GTCGAGGCCA
* * * * *
36984959 ATGCCATGTCCCATACATGGTCTTACACTGGCTTTCATATATCGGTGTCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATA--GATGACG
* * * * * * * *
36985009 ATGCCATGTTCCAAACATGGTTTTACACTAGCCCACATGTTGAGGATG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATAGATGACG
* * *
36985057 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATAGATGACG
* *
36985105 ATGCCATGTTCCAAATATGGTCTTACA
1 ATGCCATGTCCCAAACATGGTCTTACA
36985132 TTGGCTCACA
Statistics
Matches: 96, Mismatches: 27, Indels: 2
0.77 0.22 0.02
Matches are distributed among these distances:
48 64 0.67
50 32 0.33
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATAGATGACG
Found at i:36986427 original size:29 final size:30
Alignment explanation
Indices: 36986362--36986475 Score: 123
Period size: 29 Copynumber: 4.0 Consensus size: 30
36986352 ACATACATGT
*
36986362 ATATGGCCCA-CTAGGCCCAA-TCTTATTC
1 ATATGGCCCATCTAGGCCCAATTCATATTC
* *
36986390 AAATGGCCCATCT-GGCCCAGTTCATATTC
1 ATATGGCCCATCTAGGCCCAATTCATATTC
* *
36986419 TTATGGCCCA-CTAAGCCCAATTC-TCATTC
1 ATATGGCCCATCTAGGCCCAATTCAT-ATTC
*
36986448 ATATGGCCCAT-TAGGCCCAAATCATATT
1 ATATGGCCCATCTAGGCCCAATTCATATT
36986476 GTATTCATGC
Statistics
Matches: 70, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
28 18 0.26
29 51 0.73
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (30 bp):
ATATGGCCCATCTAGGCCCAATTCATATTC
Found at i:36986465 original size:58 final size:57
Alignment explanation
Indices: 36986363--36986475 Score: 156
Period size: 58 Copynumber: 2.0 Consensus size: 57
36986353 CATACATGTA
* * **
36986363 TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAAGCCCAATCTCATTCAAATGGCCCATCTGGCCCAAATCATATTCT
*
36986420 TATGGCCCACTAAGCCCAATTCTCATTCATATGGCCCAT-TAGGCCCAAATCATATT
1 TATGGCCCACTAAGCCCAA-TCTCATTCAAATGGCCCATCT-GGCCCAAATCATATT
36986476 GTATTCATGC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 19 0.39
58 30 0.61
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (57 bp):
TATGGCCCACTAAGCCCAATCTCATTCAAATGGCCCATCTGGCCCAAATCATATTCT
Found at i:37006049 original size:40 final size:40
Alignment explanation
Indices: 37006004--37006133 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
37005994 CGGAATATAA
37006004 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
37006044 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
37006084 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
37006124 CCGGATATAA
1 CCGGATATAA
37006134 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:37006148 original size:40 final size:40
Alignment explanation
Indices: 37006020--37006171 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
37006010 ATAAGCATGT
* * *
37006020 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
37006060 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
37006100 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
37006140 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
37006172 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:37006154 original size:80 final size:80
Alignment explanation
Indices: 37006020--37006171 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
37006010 ATAAGCATGT
* *
37006020 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
37006085 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
37006100 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
37006163 CCCGGATAT
64 CCCGGATAT
37006172 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:37009948 original size:40 final size:39
Alignment explanation
Indices: 37009783--37009966 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
37009773 AAATTGAATG
* * *
37009783 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
37009823 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
37009863 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
37009903 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
37009942 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
37009967 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:37009991 original size:80 final size:81
Alignment explanation
Indices: 37009823--37010011 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
37009813 GCTGGAAATT
* * * *
37009823 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
37009888 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
37009904 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
37009967 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
37009983 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
37010012 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:37017469 original size:40 final size:39
Alignment explanation
Indices: 37017358--37017509 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
37017348 TATAACATGT
* ** *
37017358 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
37017398 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
37017438 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
37017478 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
37017510 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:37017492 original size:80 final size:80
Alignment explanation
Indices: 37017358--37017509 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
37017348 TATAACATGT
* *
37017358 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
37017423 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
37017438 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
37017501 CCCGGATAT
64 CCCGGATAT
37017510 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:37019448 original size:48 final size:47
Alignment explanation
Indices: 37019291--37019475 Score: 163
Period size: 48 Copynumber: 3.8 Consensus size: 47
37019281 AAAAGGGTAC
* * *
37019291 AATGTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAT
1 AATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
* * * * * * *
37019338 ATTGGTGCCGATGCCATGTTCCAAACATGGACTTACATTAGCCCACATGT
1 AAT-GT--CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
* * * * *
37019388 CGAGGCCGATGCCATGTCCCAGACATGGTCTCACACTAGCTCTCATAT
1 -AATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
* * *
37019436 AAATGTCAATGCCATGTTCCAAACTTGGTCTTACACTAGC
1 -AATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGC
37019476 CCACATGTTG
Statistics
Matches: 103, Mismatches: 31, Indels: 7
0.73 0.22 0.05
Matches are distributed among these distances:
47 2 0.02
48 67 0.65
50 34 0.33
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
AATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
Found at i:37019498 original size:98 final size:97
Alignment explanation
Indices: 37019296--37019483 Score: 272
Period size: 98 Copynumber: 1.9 Consensus size: 97
37019286 GGTACAATGT
* * * * *
37019296 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATATTGGTGCCGATGCCATGTTCCA
1 CGATGCCATGTCCCAGACATGGTCTCACACTAGCTCTCATATAATGGT-CCAATGCCATGTTCCA
*
37019361 AACATGGACTTACATTAGCCCACATGTCGAGGC
65 AACATGGACTTACACTAGCCCACATGTCGAGGC
37019394 CGATGCCATGTCCCAGACATGGTCTCACACTAGCTCTCATATAAAT-GT-CAATGCCATGTTCCA
1 CGATGCCATGTCCCAGACATGGTCTCACACTAGCTCTCATAT-AATGGTCCAATGCCATGTTCCA
* *
37019457 AACTTGGTCTTACACTAGCCCACATGT
65 AACATGGACTTACACTAGCCCACATGT
37019484 TGAAGTTGTG
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
96 38 0.47
98 41 0.51
99 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (97 bp):
CGATGCCATGTCCCAGACATGGTCTCACACTAGCTCTCATATAATGGTCCAATGCCATGTTCCAA
ACATGGACTTACACTAGCCCACATGTCGAGGC
Found at i:37030977 original size:40 final size:39
Alignment explanation
Indices: 37030933--37031118 Score: 167
Period size: 40 Copynumber: 4.7 Consensus size: 39
37030923 CACATGCATG
*
37030933 AATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACA
1 AATGCCTTCGGGTCTTAGCCCGGATAGAAC-ACTAGCACA
* ** * *
37030973 AATGCCTTCGGGTATTAGCCCGGATTTAACAACTTGCACG
1 AATGCCTTCGGGTCTTAGCCCGGATAGAAC-ACTAGCACA
* **
37031013 AATGCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCAC-
1 AATGCCTTCGGGTCTTAGCCCGGAT-AGAACACTAGCACA
* * * * *
37031052 AATGGCCTTCGGGTCTTAACCCAGATATAATTACTAGCATA
1 AAT-GCCTTCGGGTCTTAGCCCGGATAGAA-CACTAGCACA
* * *
37031093 AATGTCTTTGGGACTTAGCCCGGATA
1 AATGCCTTCGGGTCTTAGCCCGGATA
37031119 TCATTCAATT
Statistics
Matches: 119, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 111 0.93
41 5 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (39 bp):
AATGCCTTCGGGTCTTAGCCCGGATAGAACACTAGCACA
Found at i:37043169 original size:43 final size:44
Alignment explanation
Indices: 37043121--37043233 Score: 126
Period size: 43 Copynumber: 2.6 Consensus size: 44
37043111 GTCTAACTTA
* *
37043121 TGATTTACGTGTAAGACCATGTCTAGGACA-TCGGCAT-TATATT
1 TGATTTACATGTAAGACCATGTCTAGGACAGT-GGCATCGATATT
* *
37043164 TGATTT-CATGTAAGACCCTGTCTGGGACAGTGGCATCGATATT
1 TGATTTACATGTAAGACCATGTCTAGGACAGTGGCATCGATATT
* * *
37043207 CGA-CTACATGTAAGACCACGTCTAGGA
1 TGATTTACATGTAAGACCATGTCTAGGA
37043234 TGTTGGCATT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 26 0.45
43 32 0.55
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (44 bp):
TGATTTACATGTAAGACCATGTCTAGGACAGTGGCATCGATATT
Found at i:37049443 original size:27 final size:28
Alignment explanation
Indices: 37049387--37049456 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
37049377 AAACTTGTAC
37049387 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
37049415 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
37049442 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37049457 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:37049467 original size:27 final size:27
Alignment explanation
Indices: 37049387--37049468 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
37049377 AAACTTGTAC
* *
37049387 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
37049415 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
37049442 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
37049469 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:37060165 original size:27 final size:28
Alignment explanation
Indices: 37060109--37060178 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
37060099 AAACTTGTAC
37060109 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
37060137 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
37060164 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37060179 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:37060189 original size:27 final size:27
Alignment explanation
Indices: 37060109--37060190 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
37060099 AAACTTGTAC
* *
37060109 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
37060137 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
37060164 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
37060191 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:37063975 original size:93 final size:93
Alignment explanation
Indices: 37063863--37064033 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
37063853 GCCCATAAGT
* *
37063863 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37063928 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
37063956 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37064021 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37064034 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37064030 original size:46 final size:46
Alignment explanation
Indices: 37063855--37064030 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
37063845 TGTAACCCGC
* * *
37063855 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
37063901 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
37063951 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
37063994 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37064031 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:37066437 original size:30 final size:30
Alignment explanation
Indices: 37066393--37066481 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
37066383 CAAAGATAAC
*
37066393 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
37066422 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
37066452 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
37066482 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:37066441 original size:15 final size:14
Alignment explanation
Indices: 37066393--37066475 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
37066383 CAAAGATAAC
*
37066393 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
37066407 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
37066422 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
37066437 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
37066452 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
37066467 AAGAAACCC
1 AAGAAACCC
37066476 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:37066481 original size:15 final size:15
Alignment explanation
Indices: 37066404--37066481 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
37066394 AGAAAACCGA
37066404 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
37066419 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
37066433 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
37066448 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
37066464 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
37066479 ATA
1 ATA
37066482 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:37068581 original size:21 final size:20
Alignment explanation
Indices: 37068557--37068614 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
37068547 TTTTGCTTTG
37068557 CTCTGCTGCCATCGCTGCTGC
1 CTCTGCT-CCATCGCTGCTGC
*
37068578 CTCTGCCTCCCTCGCTGCTGC
1 CTCTG-CTCCATCGCTGCTGC
* *
37068599 CGCTGCCTCCCTCGCT
1 CTCTG-CTCCATCGCT
37068615 ACTGTTGCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 32 0.94
22 2 0.06
ACGTcount: A:0.02, C:0.50, G:0.21, T:0.28
Consensus pattern (20 bp):
CTCTGCTCCATCGCTGCTGC
Found at i:37068624 original size:21 final size:21
Alignment explanation
Indices: 37068568--37068632 Score: 85
Period size: 21 Copynumber: 3.1 Consensus size: 21
37068558 TCTGCTGCCA
* *
37068568 TCGCTGCTGCCTCTGCCTCCC
1 TCGCTACTGCCGCTGCCTCCC
*
37068589 TCGCTGCTGCCGCTGCCTCCC
1 TCGCTACTGCCGCTGCCTCCC
**
37068610 TCGCTACTGTTGCTGCCTCCC
1 TCGCTACTGCCGCTGCCTCCC
37068631 TC
1 TC
37068633 TTTGCTGCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.02, C:0.49, G:0.20, T:0.29
Consensus pattern (21 bp):
TCGCTACTGCCGCTGCCTCCC
Found at i:37068639 original size:15 final size:16
Alignment explanation
Indices: 37068619--37068649 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
37068609 CTCGCTACTG
37068619 TTGCTGCCTCC-CTCT
1 TTGCTGCCTCCGCTCT
37068634 TTGCTGCCTCCGCTCT
1 TTGCTGCCTCCGCTCT
37068650 AAGTTGTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.00, C:0.45, G:0.16, T:0.39
Consensus pattern (16 bp):
TTGCTGCCTCCGCTCT
Found at i:37069083 original size:13 final size:14
Alignment explanation
Indices: 37069058--37069086 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
37069048 TGATGAATTG
37069058 AATTAAACAATTAT
1 AATTAAACAATTAT
37069072 AATTAAAC-ATTAT
1 AATTAAACAATTAT
37069085 AA
1 AA
37069087 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:37069275 original size:17 final size:16
Alignment explanation
Indices: 37069253--37069291 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
37069243 AAAATATTAT
37069253 TTAATAGTAGAAAGTAA
1 TTAATAGTAGAAAG-AA
* *
37069270 TTAATATTTGAAAGAA
1 TTAATAGTAGAAAGAA
37069286 TTAATA
1 TTAATA
37069292 AATTCATAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (16 bp):
TTAATAGTAGAAAGAA
Found at i:37072076 original size:79 final size:81
Alignment explanation
Indices: 37071975--37072159 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
37071965 ACGACTCGCT
** * *
37071975 CAAATGCCTTCGGGACGAAGCCCAG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCAGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
37072038 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* * **
37072055 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
37072119 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
37072135 CAAA-GCCTTCGGGACTTAGCCCAGA
1 CAAATGCCTTCGGGACTTAGCCCAGA
37072160 CATCATTCGA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:37072089 original size:39 final size:40
Alignment explanation
Indices: 37071975--37072156 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
37071965 ACGACTCGCT
** * * *
37071975 CAAATGCCTTCGGGACGAAGCCCAG-TTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCA
* * *
37072015 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* *
37072055 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * * * *
37072094 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCA
37072135 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
37072157 AGACATCATT
Statistics
Matches: 115, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.27
40 71 0.62
41 11 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
Found at i:37077458 original size:9 final size:9
Alignment explanation
Indices: 37077437--37077603 Score: 80
Period size: 9 Copynumber: 19.0 Consensus size: 9
37077427 TATGTATTAC
*
37077437 GTAAGTTAA
1 GTAAGTTAT
37077446 GTAAGCTT-T
1 GTAAG-TTAT
37077455 GTAAGTTAT
1 GTAAGTTAT
37077464 GTAAGTTAT
1 GTAAGTTAT
* *
37077473 GTTA-TGAT
1 GTAAGTTAT
* *
37077481 ATACATTTAT
1 GTA-AGTTAT
*
37077491 GTAAGGTAT
1 GTAAGTTAT
37077500 GTAAGTTAT
1 GTAAGTTAT
* *
37077509 GATATGATAT
1 G-TAAGTTAT
* *
37077519 AT-ATTTAT
1 GTAAGTTAT
37077527 GT-A-TTAT
1 GTAAGTTAT
*
37077534 GTAAGTTGT
1 GTAAGTTAT
37077543 GTAAGTTAT
1 GTAAGTTAT
* *
37077552 GATATGATAT
1 G-TAAGTTAT
* *
37077562 AT-ATTTAT
1 GTAAGTTAT
*
37077570 GT-A-TTTT
1 GTAAGTTAT
*
37077577 GTAAGGTAT
1 GTAAGTTAT
*
37077586 ATAAGTTAT
1 GTAAGTTAT
37077595 GTAAGTTAT
1 GTAAGTTAT
37077604 TATATGATAT
Statistics
Matches: 116, Mismatches: 32, Indels: 20
0.69 0.19 0.12
Matches are distributed among these distances:
7 11 0.09
8 18 0.16
9 68 0.59
10 19 0.16
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:37077501 original size:36 final size:36
Alignment explanation
Indices: 37077454--37077572 Score: 130
Period size: 36 Copynumber: 3.1 Consensus size: 36
37077444 AAGTAAGCTT
* *
37077454 TGTAAGTTATGTAAGTTATGTTATGATATACATTTA
1 TGTAAGGTATGTAAGTTATGATATGATATACATTTA
*
37077490 TGTAAGGTATGTAAGTTATGATATGATATATATTTA
1 TGTAAGGTATGTAAGTTATGATATGATATACATTTA
* *
37077526 TGTATTATGTAAGTTGTGTAAGTTATGATATGATATATATTTA
1 TGTA--A-G---G-TATGTAAGTTATGATATGATATACATTTA
37077569 TGTA
1 TGTA
37077573 TTTTGTAAGG
Statistics
Matches: 72, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
36 37 0.51
38 1 0.01
39 1 0.01
42 1 0.01
43 32 0.44
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (36 bp):
TGTAAGGTATGTAAGTTATGATATGATATACATTTA
Found at i:37077546 original size:43 final size:43
Alignment explanation
Indices: 37077487--37077595 Score: 182
Period size: 43 Copynumber: 2.5 Consensus size: 43
37077477 TGATATACAT
37077487 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
* *
37077530 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
* *
37077573 TTTTGTAAGGTATATAAGTTATG
1 TTATGTAAGGTATGTAAGTTATG
37077596 TAAGTTATTA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48
Consensus pattern (43 bp):
TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
Found at i:37077591 original size:52 final size:55
Alignment explanation
Indices: 37077511--37077674 Score: 203
Period size: 52 Copynumber: 3.0 Consensus size: 55
37077501 TAAGTTATGA
* * *
37077511 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATATATATT
1 TATGATATATATTTAGGTATTA-GTAAGTTATGTAAGTTATTATATGATATATATT
37077567 TATG-TAT-T-TTGTAAGGTA-TA-TAAGTTATGTAAGTTATTATATGATATATATT
1 TATGATATATATT-T-AGGTATTAGTAAGTTATGTAAGTTATTATATGATATATATT
* * *
37077619 TATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTTTTATATGATATATATT
1 TATGATATATATTTAGGTATTA-GTAAGTTATGTAAGTTATTATATGATATATATT
37077675 AACATTAAGA
Statistics
Matches: 94, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
52 34 0.36
53 9 0.10
54 8 0.09
55 9 0.10
56 34 0.36
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.52
Consensus pattern (55 bp):
TATGATATATATTTAGGTATTAGTAAGTTATGTAAGTTATTATATGATATATATT
Found at i:37077608 original size:43 final size:43
Alignment explanation
Indices: 37077485--37077608 Score: 160
Period size: 43 Copynumber: 2.9 Consensus size: 43
37077475 TATGATATAC
*
37077485 ATTTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGT
1 ATTT-TGTAAGGTATGTAAGTTATGATAAGATATATATTTATGT
* * * *
37077529 ATTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGT
1 ATTTTGTAAGGTATGTAAGTTATGATAAGATATATATTTATGT
* *
37077572 ATTTTGTAAGGTATATAAGTTATG-TAAGTTATTATAT
1 ATTTTGTAAGGTATGTAAGTTATGATAAGATA-TATAT
37077609 GATATATATT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 5 0.07
43 62 0.89
44 3 0.04
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.48
Consensus pattern (43 bp):
ATTTTGTAAGGTATGTAAGTTATGATAAGATATATATTTATGT
Found at i:37077624 original size:13 final size:13
Alignment explanation
Indices: 37077601--37077635 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
37077591 TTATGTAAGT
37077601 TATTATATGATATA
1 TATT-TATGATATA
37077615 TATTTATGATATA
1 TATTTATGATATA
37077628 TATTTATG
1 TATTTATG
37077636 TATTATGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 17 0.81
14 4 0.19
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (13 bp):
TATTTATGATATA
Found at i:37081398 original size:28 final size:28
Alignment explanation
Indices: 37081362--37081431 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
37081352 CGGATGCTTA
*
37081362 GGGATTTGGGGGAAAATTTAAGGATTAG
1 GGGAATTGGGGGAAAATTTAAGGATTAG
37081390 GGGAATT-GGGGAAAATTTAAGGATTAG
1 GGGAATTGGGGGAAAATTTAAGGATTAG
*
37081417 GGGAATTGGTGGAAA
1 GGGAATTGGGGGAAA
37081432 TCTGTTAAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 27 0.69
28 12 0.31
ACGTcount: A:0.34, C:0.00, G:0.40, T:0.26
Consensus pattern (28 bp):
GGGAATTGGGGGAAAATTTAAGGATTAG
Found at i:37081718 original size:16 final size:16
Alignment explanation
Indices: 37081694--37081744 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
37081684 CTAACCTCCA
*
37081694 TTTTATATTCATTTTT
1 TTTTGTATTCATTTTT
*
37081710 TTTTGTATTTAATTTTT
1 TTTTGTA-TTCATTTTT
*
37081727 ATTTGT-TATCATTTTT
1 TTTTGTAT-TCATTTTT
37081743 TT
1 TT
37081745 AAATCTAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 1 0.04
16 14 0.50
17 13 0.46
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (16 bp):
TTTTGTATTCATTTTT
Found at i:37081949 original size:7 final size:7
Alignment explanation
Indices: 37081924--37081995 Score: 65
Period size: 7 Copynumber: 10.1 Consensus size: 7
37081914 ACTAATTTAT
37081924 CTAAACC
1 CTAAACC
*
37081931 CTAATCC
1 CTAAACC
*
37081938 TCTAATCC
1 -CTAAACC
37081946 CTAAACC
1 CTAAACC
37081953 CTAAACC
1 CTAAACC
*
37081960 CTAAAATC
1 CT-AAACC
37081968 CTAAACC
1 CTAAACC
**
37081975 CTTCA-C
1 CTAAACC
*
37081981 ATAAACC
1 CTAAACC
37081988 CTAAACC
1 CTAAACC
37081995 C
1 C
37081996 CAGACCCGTA
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
6 3 0.06
7 36 0.69
8 13 0.25
ACGTcount: A:0.39, C:0.40, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:37081972 original size:15 final size:14
Alignment explanation
Indices: 37081924--37081995 Score: 65
Period size: 15 Copynumber: 5.1 Consensus size: 14
37081914 ACTAATTTAT
*
37081924 CTAAACCCTAATCC
1 CTAAACCCTAAACC
*
37081938 TCTAATCCCTAAACC
1 -CTAAACCCTAAACC
*
37081953 CTAAACCCTAAAATC
1 CTAAACCCT-AAACC
**
37081968 CTAAACCCTTCA-C
1 CTAAACCCTAAACC
*
37081981 ATAAACCCTAAACC
1 CTAAACCCTAAACC
37081995 C
1 C
37081996 CAGACCCGTA
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
13 10 0.22
14 10 0.22
15 25 0.56
ACGTcount: A:0.39, C:0.40, G:0.00, T:0.21
Consensus pattern (14 bp):
CTAAACCCTAAACC
Found at i:37082044 original size:22 final size:23
Alignment explanation
Indices: 37082019--37082087 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 23
37082009 TGTAACCATT
37082019 AACCATATAAACC-TAAACCCTA
1 AACCATATAAACCATAAACCCTA
37082041 AACCATAATTTATTAACCATAAACCCTA
1 AACCAT-A--TA--AACCATAAACCCTA
37082069 AACCATA-AAACCATAAACC
1 AACCATATAAACCATAAACC
37082088 TTACACATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
22 17 0.41
23 1 0.02
24 1 0.02
25 2 0.05
27 5 0.12
28 15 0.37
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (23 bp):
AACCATATAAACCATAAACCCTA
Found at i:37082081 original size:8 final size:7
Alignment explanation
Indices: 37082025--37082087 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
37082015 CATTAACCAT
37082025 ATAAACC
1 ATAAACC
37082032 -TAAACC
1 ATAAACC
*
37082038 CTAAACC
1 ATAAACC
***
37082045 ATAATTT
1 ATAAACC
*
37082052 ATTAACC
1 ATAAACC
37082059 ATAAACC
1 ATAAACC
*
37082066 CTAAACC
1 ATAAACC
37082073 ATAAAACC
1 AT-AAACC
37082081 ATAAACC
1 ATAAACC
37082088 TTACACATAA
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
6 6 0.14
7 30 0.70
8 7 0.16
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.21
Consensus pattern (7 bp):
ATAAACC
Found at i:37083280 original size:11 final size:12
Alignment explanation
Indices: 37083253--37083282 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
37083243 CACTTTTATA
37083253 AAAAACGCCGCT
1 AAAAACGCCGCT
37083265 AAAAACGCCGCT
1 AAAAACGCCGCT
37083277 AAAAAC
1 AAAAAC
37083283 CTATTTTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.30, G:0.13, T:0.07
Consensus pattern (12 bp):
AAAAACGCCGCT
Found at i:37084160 original size:26 final size:28
Alignment explanation
Indices: 37084099--37084160 Score: 65
Period size: 29 Copynumber: 2.2 Consensus size: 28
37084089 CATTACATAT
*
37084099 TTATATTAACATTTTTTTAATAGCAAAA
1 TTATAATAACATTTTTTTAATAGCAAAA
* * *
37084127 TAATTAATAATATTTTTTT-AT-GTAAAA
1 TTA-TAATAACATTTTTTTAATAGCAAAA
37084154 TTATAAT
1 TTATAAT
37084161 GTGAAACAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
26 4 0.14
27 7 0.25
28 4 0.14
29 13 0.46
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (28 bp):
TTATAATAACATTTTTTTAATAGCAAAA
Found at i:37096707 original size:51 final size:51
Alignment explanation
Indices: 37096592--37097010 Score: 715
Period size: 51 Copynumber: 8.3 Consensus size: 51
37096582 ATAATATATA
*
37096592 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA--TATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATG
37096641 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATG
37096692 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATG
37096743 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATG
*
37096794 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA--TATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATG
*
37096843 TGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATATATGTATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATG
37096894 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATA--TATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATG
* * *
37096943 TGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATG
* * *
37096994 TGGTAAAGCCGAATGGC
1 TGATAAGGCCTAATGGC
37097011 TAATGTGAAT
Statistics
Matches: 354, Mismatches: 10, Indels: 10
0.95 0.03 0.03
Matches are distributed among these distances:
49 138 0.39
51 216 0.61
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (51 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATG
Found at i:37096991 original size:151 final size:151
Alignment explanation
Indices: 37096592--37097010 Score: 734
Period size: 151 Copynumber: 2.8 Consensus size: 151
37096582 ATAATATATA
*
37096592 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGG
* * *
37096657 CCGATGTGATGAATGTGAAAATGTATATATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 CCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAAT
37096722 GTGAAAATGTATATATGTATG
131 GTGAAAATGTATATATGTATG
37096743 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATGTGATAAGGCCTAAT
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATA--TATGTGATAAGGCCTAAT
37096808 GGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGACGTGATGA
64 GGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGA
37096871 ATGTGAAAATGTATATATGTATG
129 ATGTGAAAATGTATATATGTATG
37096894 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGG
* * * *
37096959 CCGACGTGATGAATGTGAAAGTGTATATATATATGTGGTAAAGCCGAATGGC
66 CCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
37097011 TAATGTGAAT
Statistics
Matches: 256, Mismatches: 8, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
149 42 0.16
151 172 0.67
153 42 0.16
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (151 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAAT
GTGAAAATGTATATATGTATG
Found at i:37097018 original size:100 final size:100
Alignment explanation
Indices: 37096592--37097010 Score: 739
Period size: 100 Copynumber: 4.2 Consensus size: 100
37096582 ATAATATATA
*
37096592 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGG
*
37096657 CCGATGTGATGAATGTGAAAATGTATATATGTATG
66 CCGACGTGATGAATGTGAAAATGTATATATGTATG
37096692 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTATGTGATAAGGCCTAAT
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATA--TATGTGATAAGGCCTAAT
*
37096757 GGCCGATGTGATGAATGTGAAAATGTATATATGTATG
64 GGCCGACGTGATGAATGTGAAAATGTATATATGTATG
*
37096794 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGG
37096859 CCGACGTGATGAATGTGAAAATGTATATATGTATG
66 CCGACGTGATGAATGTGAAAATGTATATATGTATG
37096894 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGG
* *
37096959 CCGACGTGATGAATGTGAAAGTGTATATATATATG
66 CCGACGTGATGAATGTGAAAATGTATATATGTATG
* * *
37096994 TGGTAAAGCCGAATGGC
1 TGATAAGGCCTAATGGC
37097011 TAATGTGAAT
Statistics
Matches: 308, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
100 209 0.68
102 99 0.32
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (100 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGG
CCGACGTGATGAATGTGAAAATGTATATATGTATG
Found at i:37097114 original size:37 final size:37
Alignment explanation
Indices: 37097059--37097145 Score: 140
Period size: 37 Copynumber: 2.3 Consensus size: 37
37097049 AACTTGGAAA
37097059 TATGTTCCGGGTGA-GACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-ACGACCCGATGACTACGTGTGGAGAT
*
37097097 TATGTCTGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
37097134 TATGTCCGGGTA
1 TATGTCCGGGTA
37097146 AGACTTCGTA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.89
38 4 0.09
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (37 bp):
TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
Found at i:37106272 original size:80 final size:80
Alignment explanation
Indices: 37106074--37106291 Score: 264
Period size: 80 Copynumber: 2.7 Consensus size: 80
37106064 TGGATGATAA
* * *
37106074 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGT-GACTAGT-TCCGGGCTAAGTCCTGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAG-CTA-TATCCGGGCTAAGTCCCGAAGGCATT
*
37106137 TGTGCGAGTTACTATAT
64 GGTGCGAGTTACTATAT
* * *
37106154 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCCGGGCTAAGTCCCGAAGGCATTG
37106218 GTGCGAGTTACTATAT
65 GTGCGAGTTACTATAT
* * * * * *
37106234 CCGGGCTATGTCCCAAAGGCATTCGAGCAAGTAGCTATAT-CTGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGG
37106292 TACTTGGCTT
Statistics
Matches: 120, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
79 18 0.15
80 101 0.84
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTATAT
Found at i:37106274 original size:40 final size:40
Alignment explanation
Indices: 37106074--37106256 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
37106064 TGGATGATAA
* * *
37106074 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
37106114 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37106154 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37106194 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
37106234 CCGGGCTATGTCCCAAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
37106257 CGAGCAAGTA
Statistics
Matches: 132, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 131 0.99
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:37108690 original size:93 final size:93
Alignment explanation
Indices: 37108583--37108753 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
37108573 ACCCCTAAGT
*
37108583 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37108647 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
37108676 GAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37108741 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37108754 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37108749 original size:46 final size:46
Alignment explanation
Indices: 37108578--37108751 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
37108568 AACCCACCCC
* **
37108578 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-TATTCGCATCCA
*
37108624 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA----TA-TTCGCATCCA
* *
37108672 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCA
*
37108717 TAGGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
37108752 GCTCAACCAT
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 1 0.01
46 60 0.56
47 31 0.29
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCA
Found at i:37109206 original size:30 final size:30
Alignment explanation
Indices: 37109172--37109231 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37109162 ATTTAATACG
37109172 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
37109202 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
37109232 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:37116633 original size:2 final size:2
Alignment explanation
Indices: 37116626--37116651 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
37116616 ATGTGTTATG
37116626 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
37116652 GTGCATGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37116713 original size:39 final size:39
Alignment explanation
Indices: 37116670--37116809 Score: 192
Period size: 39 Copynumber: 3.5 Consensus size: 39
37116660 TAATGAAGAA
37116670 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
37116709 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
37116748 TTATATCCAGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
37116787 TTATATCTGGGCTTAATGTCCCG
1 TTATATCCGGGC-TAA-GTCCCG
37116810 CATGCTTTGT
Statistics
Matches: 90, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 71 0.79
40 19 0.21
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:37121809 original size:28 final size:28
Alignment explanation
Indices: 37121777--37121860 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
37121767 AACTTCGATC
37121777 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
37121805 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
37121827 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
37121855 ACGTGT
1 ACGTGT
37121861 ATCAAATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:37121850 original size:50 final size:49
Alignment explanation
Indices: 37121673--37121917 Score: 301
Period size: 49 Copynumber: 4.9 Consensus size: 49
37121663 TCTATTGTGA
* *
37121673 GGTCACGTGTGTAGTACTAATTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * * * *
37121722 GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * **
37121772 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
37121822 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
37121872 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
37121918 GCTTTGGCTA
Statistics
Matches: 166, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 80 0.48
50 49 0.30
51 37 0.22
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:37123541 original size:48 final size:49
Alignment explanation
Indices: 37123465--37123892 Score: 491
Period size: 48 Copynumber: 8.9 Consensus size: 49
37123455 ATACTAGGGT
37123465 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-TGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCATTGA
* * *
37123513 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGG-CATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCATTGA
* *
37123561 TATGAGAGCTAGTGTAAGAACATGTCTT-GGACATGGCATCGGCC-TCGA
1 TATGAGAGCTAGTGTAAGACCATGT-TTGGGACATGGCATCGGCCATTGA
* * * * *
37123609 TATGTGAGATAGTGTAAGACCATGTTTGGAACATGGCATC-GACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCATTGA
* * * *
37123657 TATGAGAGCTAGTGTAAGACCATGTCTGGGACTTGGCATTGG-CTTTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCATTGA
* * * *
37123705 TAT-ATGAGCTAGTGTAAGACCATGTTTGGAACATGGCAT-TGACATTTA
1 TATGA-GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCATTGA
* * *
37123753 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCC-TCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCATTGA
* * * * *
37123801 TATGTGAGCTAGCGTAAGACCATGTTTGGAACATGGCATC-GACACTGATA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCATTG--A
* *
37123851 TATGAGAGCCAGTGTAAGACCAT-TCTGGGACATGGCATCGGC
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC
37123893 ATCTTATAAT
Statistics
Matches: 316, Mismatches: 50, Indels: 26
0.81 0.13 0.07
Matches are distributed among these distances:
47 10 0.03
48 263 0.83
49 21 0.07
50 22 0.07
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (49 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCATTGA
Found at i:37123629 original size:96 final size:96
Alignment explanation
Indices: 37123465--37123892 Score: 680
Period size: 96 Copynumber: 4.4 Consensus size: 96
37123455 ATACTAGGGT
*
37123465 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAT-GATATGTGAGCTAGTGTA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCGATATGTGAGCTAGTGTA
*
37123529 AGACCATGTTTGGAACATGGCATCGGCATTTA
65 AGACCATGTTTGGAACATGGCATCGACATTTA
* * *
37123561 TATGAGAGCTAGTGTAAGAACATGTCTTGGACATGGCATCGGCCTCGATATGTGAGATAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
37123626 GACCATGTTTGGAACATGGCATCGACATTTA
66 GACCATGTTTGGAACATGGCATCGACATTTA
* * * * *
37123657 TATGAGAGCTAGTGTAAGACCATGTCTGGGACTTGGCATTGGCTTTGATATATGAGCTAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
*
37123722 GACCATGTTTGGAACATGGCATTGACATTTA
66 GACCATGTTTGGAACATGGCATCGACATTTA
* *
37123753 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATATGTGAGCTAGCGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
*
37123818 GACCATGTTTGGAACATGGCATCGACACTGATA
66 GACCATGTTTGGAACATGGCATCGACA-T-TTA
*
37123851 TATGAGAGCCAGTGTAAGACCAT-TCTGGGACATGGCATCGGC
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
37123893 ATCTTATAAT
Statistics
Matches: 304, Mismatches: 25, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
95 1 0.00
96 260 0.86
97 19 0.06
98 24 0.08
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (96 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
GACCATGTTTGGAACATGGCATCGACATTTA
Found at i:37126967 original size:51 final size:49
Alignment explanation
Indices: 37126849--37127032 Score: 201
Period size: 49 Copynumber: 3.7 Consensus size: 49
37126839 ACTATTGTGA
* * * **
37126849 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTA-GTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAATT
* *
37126897 GGTCATATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAATT
* * * *
37126946 GTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATTATT
1 G-G-TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAATT
* * *
37126997 GGTCGCATGTGTAGTACTAAGTGTAGGCCACTATGC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGC
37127033 ATACTAGATA
Statistics
Matches: 113, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
48 30 0.27
49 40 0.35
50 5 0.04
51 38 0.34
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAATT
Found at i:37127030 original size:100 final size:100
Alignment explanation
Indices: 37126842--37127032 Score: 294
Period size: 100 Copynumber: 1.9 Consensus size: 100
37126832 CAAATGAACT
* * *
37126842 ATTGTGAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTAGTGTACCGGATAATTGGTCATATGT
1 ATTGTGA-GTCACGTGTGTAGTACTAAGTGCAGGCTACTAGTGTACCAGATAATTGGTCACATGT
*
37126907 GTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAA
65 GTAGTACTAAGTGCAGGCCACTATGCGTACCCAAAA
* *
37126943 ATTGTGA-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGT
1 ATTGTGAGTCACGTGTGTAGTACTAAGTGCAGGCTACTA-GTGTACCAGATAATTGGTCACATGT
*
37127007 GTAGTACTAAGTGTAGGCCACTATGC
65 GTAGTACTAAGTGCAGGCCACTATGC
37127033 ATACTAGATA
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
99 30 0.37
100 45 0.55
101 7 0.09
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (100 bp):
ATTGTGAGTCACGTGTGTAGTACTAAGTGCAGGCTACTAGTGTACCAGATAATTGGTCACATGTG
TAGTACTAAGTGCAGGCCACTATGCGTACCCAAAA
Found at i:37128539 original size:18 final size:18
Alignment explanation
Indices: 37128516--37128551 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
37128506 TCTGCTAGGT
37128516 ATCGATCTAGTATTGATA
1 ATCGATCTAGTATTGATA
37128534 ATCGATCTAGTATTGATA
1 ATCGATCTAGTATTGATA
37128552 CTTTTCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (18 bp):
ATCGATCTAGTATTGATA
Found at i:37130069 original size:38 final size:37
Alignment explanation
Indices: 37130000--37130094 Score: 111
Period size: 38 Copynumber: 2.5 Consensus size: 37
37129990 TCCTAAACTG
* * *
37130000 TGACATAATTAAAATCTCTTATTAAATATGTTTAGATTA
1 TGACATAATT-AAA-CTCATATTAAATATGTTCAAATTA
37130039 TGACATAATTGAAACTCATATT-AATGATGTTCAAATTA
1 TGACATAATT-AAACTCATATTAAAT-ATGTTCAAATTA
37130077 TGACATAATTAAGACTCA
1 TGACATAATTAA-ACTCA
37130095 AACTAATTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
37 5 0.10
38 32 0.64
39 13 0.26
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (37 bp):
TGACATAATTAAACTCATATTAAATATGTTCAAATTA
Found at i:37150508 original size:49 final size:49
Alignment explanation
Indices: 37150445--37150567 Score: 122
Period size: 49 Copynumber: 2.5 Consensus size: 49
37150435 GTCAATGCCG
* * * *
37150445 TGTCCCAAACAGGTCTTACACTGACTTTCATATATCTAGGCTGACGCCA
1 TGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGGCTGACGCCA
* * * * * * *
37150494 TGTCCCAGATAGGTCTTACGCT-AGCTCTCATCTATCGATGTTGATGTCG
1 TGTCCCAGATAGGTCTTACACTGA-CTCTCATATATCGAGGCTGACGCCA
*
37150543 TTTCCCAGATAGGTCTTACACTGAC
1 TGTCCCAGATAGGTCTTACACTGAC
37150568 ACACAATAAG
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
48 1 0.02
49 57 0.97
50 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (49 bp):
TGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGGCTGACGCCA
Found at i:37159736 original size:38 final size:39
Alignment explanation
Indices: 37159617--37159744 Score: 186
Period size: 39 Copynumber: 3.3 Consensus size: 39
37159607 GTGTGAGATA
*
37159617 TATATCCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAATCCCGAAGGCATTTGTGCTGGTGT
* *
37159656 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAATCCCGAAGGCATTTGTGCTGGTGT
* * *
37159695 TATATCTGGGCTAAATCTCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAATCCCGAAGGCATTTGTGCTGGTGT
*
37159733 TATATCCAGGCT
1 TATATCCGGGCT
37159745 TAAAGTCTCG
Statistics
Matches: 80, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
38 21 0.26
39 59 0.74
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (39 bp):
TATATCCGGGCTAAATCCCGAAGGCATTTGTGCTGGTGT
Found at i:37161980 original size:49 final size:48
Alignment explanation
Indices: 37161843--37162203 Score: 135
Period size: 49 Copynumber: 7.6 Consensus size: 48
37161833 AGATGCCGAC
* *
37161843 GCCATGTCCCAGACATGGTCTTACACTGGCTAGTACATTA---AAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCT-CT-CATTATCGAGGTCGAT
* * * ** * * * *
37161891 GCCGTGTCCTAGACAAGTCTTACACTGAATTTCGTATATCGAGGCCAAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCAT-TATCGAGGTCGAT
*
37161940 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCG-GTGTTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCAT-TATCGAG-GTCGAT
* * * * * * * * *
37161989 GCCGTGTCCCAGATAGGTCATACACTGACACACA--A-CAAGCT-GAC
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATTATCGAGGTCGAT
* * * *
37162033 GCCATGTCCTAGATAGGTCTTACACTAGCT-T-GTATATCCTGAGGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCAT-TAT-C-GAGGTCGAT
* * * * * * * *
37162082 G-TATGTCCCAAACATGTCTTACACTAGCTCTC-GTCTCAATG-CTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATTATCGAGGTC-GAT
* * * *
37162128 G-CATGTCCCAGACATGTCTTACTCTGGCTCTCATAAT-GTGG-CTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATTATCGAGGTC-GAT
* * * *
37162174 G-CATGTCCCAAACATGCCTTACACTAGCTC
1 GCCATGTCCCAGACAGGTCTTACACTGGCTC
37162204 ACATACCACC
Statistics
Matches: 232, Mismatches: 64, Indels: 36
0.70 0.19 0.11
Matches are distributed among these distances:
44 26 0.11
45 6 0.03
46 70 0.30
47 15 0.06
48 42 0.18
49 73 0.31
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATTATCGAGGTCGAT
Found at i:37162144 original size:46 final size:45
Alignment explanation
Indices: 37162079--37162208 Score: 147
Period size: 46 Copynumber: 2.8 Consensus size: 45
37162069 TCCTGAGGTC
* *
37162079 GATGTATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAA-T-GCT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTC--AT-AAGTGGCT
* * *
37162125 GATGCATGTCCCAGACATGTCTTACTCTGGCTCTCATAATGTGGCT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAA-GTGGCT
* *
37162171 GATGCATGTCCCAAACATGCCTTACACTAGCTCACATA
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATA
37162209 CCACCTAATG
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 67 0.94
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAAGTGGCT
Found at i:37166574 original size:28 final size:28
Alignment explanation
Indices: 37166542--37166597 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
37166532 TATTTTGAAG
37166542 TATGGTCAAAATTTAAAATTTTACCCAT
1 TATGGTCAAAATTTAAAATTTTACCCAT
*
37166570 TATGGTCAAAGTTTAAAATTTTACCCAT
1 TATGGTCAAAATTTAAAATTTTACCCAT
37166598 GATAGATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (28 bp):
TATGGTCAAAATTTAAAATTTTACCCAT
Found at i:37183173 original size:23 final size:23
Alignment explanation
Indices: 37183129--37183173 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
37183119 ATTCACATGT
*
37183129 AACAATATAATATATAATACATC
1 AACAATATAATATATAAGACATC
* * *
37183152 AACAATTTCATATATACGACAT
1 AACAATATAATATATAAGACAT
37183174 TAGAATAGTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.51, C:0.16, G:0.02, T:0.31
Consensus pattern (23 bp):
AACAATATAATATATAAGACATC
Found at i:37185334 original size:13 final size:13
Alignment explanation
Indices: 37185316--37185342 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37185306 TTAACATTTA
37185316 ACTACAATTAAAC
1 ACTACAATTAAAC
37185329 ACTACAATTAAAC
1 ACTACAATTAAAC
37185342 A
1 A
37185343 TGTTTATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (13 bp):
ACTACAATTAAAC
Found at i:37186460 original size:31 final size:31
Alignment explanation
Indices: 37186425--37186488 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
37186415 CCTTTTCATG
37186425 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
37186456 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
37186487 TT
1 TT
37186489 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:37186821 original size:47 final size:47
Alignment explanation
Indices: 37186680--37186821 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
37186670 GCTTTATCAT
* * *
37186680 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTA
*
37186729 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
37186776 ATAACTGGGGCATAAGCCCTTTTGATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
37186822 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
47 60 0.69
48 15 0.17
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
Found at i:37186822 original size:24 final size:24
Alignment explanation
Indices: 37186680--37186821 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
37186670 GCTTTATCAT
*
37186680 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
37186705 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
37186729 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
37186752 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
37186776 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
37186800 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
37186822 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
23 39 0.35
24 59 0.54
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:37186896 original size:20 final size:20
Alignment explanation
Indices: 37186871--37186931 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
37186861 TTATGATTAC
37186871 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
37186891 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
37186911 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
37186931 A
1 A
37186932 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:37193540 original size:30 final size:31
Alignment explanation
Indices: 37193506--37193568 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
37193496 CCTTTTCATG
37193506 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
37193536 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
37193567 TT
1 TT
37193569 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:37193811 original size:24 final size:24
Alignment explanation
Indices: 37193760--37193902 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
37193750 GCTTTATCAT
*
37193760 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
37193785 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
37193809 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
37193832 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
37193856 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
37193880 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
37193903 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:37193839 original size:47 final size:48
Alignment explanation
Indices: 37193760--37193901 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
37193750 GCTTTATCAT
* *
37193760 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
37193809 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
37193856 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
37193902 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:37193860 original size:71 final size:72
Alignment explanation
Indices: 37193759--37193902 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
37193749 TGCTTTATCA
*
37193759 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
37193824 GCCCTTT
66 GCCCTTT
* * **
37193831 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
37193894 AGCCCTTT
65 AGCCCTTT
37193902 T
1 T
37193903 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:37193977 original size:20 final size:20
Alignment explanation
Indices: 37193952--37194011 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
37193942 TTATGATTAC
37193952 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
37193972 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
37193992 -TCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
37194011 A
1 A
37194012 CCATATTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.49
20 20 0.51
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:37193983 original size:11 final size:11
Alignment explanation
Indices: 37193952--37194006 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
37193942 TTATGATTAC
37193952 ATCATGTGCAT
1 ATCATGTGCAT
*
37193963 ATCA--TACAT
1 ATCATGTGCAT
37193972 ATCATGTGCAT
1 ATCATGTGCAT
*
37193983 ATCA--TACAT
1 ATCATGTGCAT
37193992 -TCATGTGCAT
1 ATCATGTGCAT
37194002 ATCAT
1 ATCAT
37194007 ACATACCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
8 3 0.09
9 12 0.34
10 4 0.11
11 16 0.46
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:37193997 original size:19 final size:19
Alignment explanation
Indices: 37193949--37194010 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
37193939 CATTTATGAT
37193949 TACA-TCATGTGCATATCA
1 TACATTCATGTGCATATCA
37193967 TACATATCATGTGCATATCA
1 TACAT-TCATGTGCATATCA
37193987 TACATTCATGTGCATATCA
1 TACATTCATGTGCATATCA
37194006 TACAT
1 TACAT
37194011 ACCATATTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
18 4 0.10
19 19 0.45
20 19 0.45
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (19 bp):
TACATTCATGTGCATATCA
Found at i:37194086 original size:25 final size:25
Alignment explanation
Indices: 37194054--37194101 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37194044 ATACATAAAC
* * *
37194054 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
37194079 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
37194102 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:37201597 original size:31 final size:31
Alignment explanation
Indices: 37201562--37201625 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
37201552 CCTTTTCATG
37201562 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
37201593 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
37201624 TT
1 TT
37201626 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:37201868 original size:24 final size:24
Alignment explanation
Indices: 37201817--37201959 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
37201807 GCTTTATCAT
*
37201817 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
37201842 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
37201866 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
37201889 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
37201913 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
37201937 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
37201960 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:37201896 original size:47 final size:48
Alignment explanation
Indices: 37201817--37201958 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
37201807 GCTTTATCAT
* *
37201817 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
37201866 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
37201913 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
37201959 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:37201917 original size:71 final size:72
Alignment explanation
Indices: 37201816--37201959 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
37201806 TGCTTTATCA
*
37201816 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
37201881 GCCCTTT
66 GCCCTTT
* * **
37201888 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
37201951 AGCCCTTT
65 AGCCCTTT
37201959 T
1 T
37201960 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:37202034 original size:20 final size:20
Alignment explanation
Indices: 37202009--37202069 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
37201999 TTATGATTAC
37202009 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
37202029 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
37202049 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
37202069 A
1 A
37202070 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:37202144 original size:25 final size:25
Alignment explanation
Indices: 37202112--37202159 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37202102 ATACATAAAC
* * *
37202112 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
37202137 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
37202160 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:37206527 original size:16 final size:19
Alignment explanation
Indices: 37206508--37206546 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 19
37206498 TTTTAAAAGG
37206508 AAAACA-AATT-AATC-TA
1 AAAACACAATTGAATCTTA
37206524 AAAA-ACAATTGAATCTTA
1 AAAACACAATTGAATCTTA
37206542 AAAAC
1 AAAAC
37206547 TTAATGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.05
16 8 0.42
17 4 0.21
18 6 0.32
ACGTcount: A:0.62, C:0.13, G:0.03, T:0.23
Consensus pattern (19 bp):
AAAACACAATTGAATCTTA
Found at i:37206530 original size:17 final size:17
Alignment explanation
Indices: 37206508--37206546 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
37206498 TTTTAAAAGG
37206508 AAAACAAATT-AATCTAA
1 AAAAC-AATTGAATCTAA
*
37206525 AAAACAATTGAATCTTA
1 AAAACAATTGAATCTAA
37206542 AAAAC
1 AAAAC
37206547 TTAATGAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.62, C:0.13, G:0.03, T:0.23
Consensus pattern (17 bp):
AAAACAATTGAATCTAA
Found at i:37210687 original size:40 final size:40
Alignment explanation
Indices: 37210617--37210794 Score: 279
Period size: 40 Copynumber: 4.5 Consensus size: 40
37210607 AAACCAAGTA
* *
37210617 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
37210656 CCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
37210696 CCTTCGGGACCTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37210736 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37210776 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37210795 TTATCATCCG
Statistics
Matches: 127, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.10
40 114 0.90
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37214332 original size:28 final size:26
Alignment explanation
Indices: 37214301--37214364 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
37214291 AATTACTTGA
* *
37214301 ATACCCCTATGTATGGAAAATTACTATT
1 ATACCCCTA-G-ATGCAAAATTACCATT
* *
37214329 ATACCTCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
37214355 ATACCCCTAG
1 ATACCCCTAG
37214365 GGTTACTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 22 0.71
27 1 0.03
28 8 0.26
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:37214570 original size:27 final size:26
Alignment explanation
Indices: 37214469--37214580 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
37214459 AGGAAGCGTC
* **
37214469 CTGGTGGCTATGCCACATTTATCTAAT
1 CTGGTGGCTCTGCCACA-TTATCTGTT
*
37214496 CTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
37214523 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* **
37214551 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
37214577 CTGG
1 CTGG
37214581 CAGCCATACT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:37214573 original size:54 final size:54
Alignment explanation
Indices: 37214469--37214580 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
37214459 AGGAAGCGTC
* *
37214469 CTGGTGGCTATGCCACATTTATCTAATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCACATTTATCTAATCTGGTGACTCTACCACATATATCTATT
* * * *
37214523 CTGGTGGCTCTGCCACGA-TTATCTGTATCTGGTGACTCTATCACAT-TATCTGTT
1 CTGGTGGCTATGCCAC-ATTTATCT-AATCTGGTGACTCTACCACATATATCTATT
37214577 CTGG
1 CTGG
37214581 CAGCCATACT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACATTTATCTAATCTGGTGACTCTACCACATATATCTATT
Found at i:37222363 original size:27 final size:26
Alignment explanation
Indices: 37222323--37222428 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 26
37222313 AGGAAGCGTC
*
37222323 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTCTGCCA-AATTATCTGAT
* *
37222350 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCAAAT-TATCTGAT
37222377 CTGGTGGCTCTGCCACAATTATCTGTAT
1 CTGGTGGCTCTGCCA-AATTATCTG-AT
* * *
37222405 CTGGTGACTCTGTCACATTATCTG
1 CTGGTGGCTCTGCCAAATTATCTG
37222429 TTCTAGCAGC
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.03
27 50 0.74
28 16 0.24
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCAAATTATCTGAT
Found at i:37222427 original size:54 final size:54
Alignment explanation
Indices: 37222323--37222432 Score: 168
Period size: 54 Copynumber: 2.0 Consensus size: 54
37222313 AGGAAGCGTC
* *
37222323 CTGGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* *
37222377 CTGGTGGCTCTGCCACAATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
37222431 CT
1 CT
37222433 AGCAGCCATG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:37230319 original size:3 final size:3
Alignment explanation
Indices: 37230311--37230361 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
37230301 CTGGAAATTG
37230311 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
37230359 TAA
1 TAA
37230362 AAGAAAAAGG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:37230383 original size:7 final size:7
Alignment explanation
Indices: 37230373--37230406 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
37230363 AGAAAAAGGT
37230373 AAAACTG
1 AAAACTG
37230380 AAAACTG
1 AAAACTG
37230387 AAAACTG
1 AAAACTG
37230394 AAAACTG
1 AAAACTG
37230401 AAAACT
1 AAAACT
37230407 ACAAATTGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.59, C:0.15, G:0.12, T:0.15
Consensus pattern (7 bp):
AAAACTG
Found at i:37231456 original size:17 final size:16
Alignment explanation
Indices: 37231436--37231498 Score: 81
Period size: 17 Copynumber: 3.7 Consensus size: 16
37231426 CAAATAGCCG
37231436 TTCATACTACATAACAT
1 TTCATAC-ACATAACAT
*
37231453 TTCATAACACATAACAG
1 TTCAT-ACACATAACAT
37231470 TTCATACAACATAACAT
1 TTCATAC-ACATAACAT
37231487 TTCATACCACAT
1 TTCATA-CACAT
37231499 CAAAACTCAT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
16 2 0.05
17 36 0.88
18 3 0.07
ACGTcount: A:0.43, C:0.25, G:0.02, T:0.30
Consensus pattern (16 bp):
TTCATACACATAACAT
Found at i:37231498 original size:34 final size:34
Alignment explanation
Indices: 37231419--37231498 Score: 115
Period size: 34 Copynumber: 2.4 Consensus size: 34
37231409 GAGATAATAG
* * * *
37231419 TTCATACCAAATAGCCGTTCATACTACATAACAT
1 TTCATACCACATAACAGTTCATACAACATAACAT
*
37231453 TTCATAACACATAACAGTTCATACAACATAACAT
1 TTCATACCACATAACAGTTCATACAACATAACAT
37231487 TTCATACCACAT
1 TTCATACCACAT
37231499 CAAAACTCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.41, C:0.26, G:0.04, T:0.29
Consensus pattern (34 bp):
TTCATACCACATAACAGTTCATACAACATAACAT
Found at i:37231509 original size:34 final size:34
Alignment explanation
Indices: 37231437--37231509 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 34
37231427 AAATAGCCGT
* **
37231437 TCATACTACATAACATTTCATAACACATAACAGT
1 TCATACAACATAACATTTCATAACACATAACAAC
*
37231471 TCATACAACATAACATTTCATACCACATCAA-AAC
1 TCATACAACATAACATTTCATAACACAT-AACAAC
37231505 TCATA
1 TCATA
37231510 TATTTCAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 32 0.94
35 2 0.06
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.27
Consensus pattern (34 bp):
TCATACAACATAACATTTCATAACACATAACAAC
Found at i:37232166 original size:36 final size:36
Alignment explanation
Indices: 37232125--37232212 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 36
37232115 ACACAATTTG
* ** *
37232125 CAAATTAATACAGTTTTCCATATTAATACAAATCAC
1 CAAATTAACACAGTTCGCCATAATAATACAAATCAC
* *
37232161 CAAATTAACACAGTTCGCCATAATAATATAATTCAC
1 CAAATTAACACAGTTCGCCATAATAATACAAATCAC
* *
37232197 CAAGTTAACACGGTTC
1 CAAATTAACACAGTTC
37232213 ACAATATAAC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.30
Consensus pattern (36 bp):
CAAATTAACACAGTTCGCCATAATAATACAAATCAC
Found at i:37232274 original size:17 final size:17
Alignment explanation
Indices: 37232248--37232290 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
37232238 ACACGGCATT
*
37232248 GTTTGCACATAAGTAAG
1 GTTTGCACATAAGCAAG
* *
37232265 GTTTGTACATAGGCAAG
1 GTTTGCACATAAGCAAG
*
37232282 GTTTACACA
1 GTTTGCACA
37232291 CAACATACAG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (17 bp):
GTTTGCACATAAGCAAG
Found at i:37239010 original size:47 final size:48
Alignment explanation
Indices: 37238879--37239018 Score: 149
Period size: 47 Copynumber: 2.9 Consensus size: 48
37238869 TTTGGGTGAT
* * * *
37238879 ATGTGTGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCAATGAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAATAAC
* * * * **
37238927 ATGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCAT-TGCCCTAAC
1 ATGTGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCAGCAATAAC
* *
37238974 ATGTGAGCCAGTGTAAGACCATGTTTGGAACGTGGCATCGGCAAT
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAAT
37239019 TCATCCCCTT
Statistics
Matches: 72, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
46 3 0.04
47 34 0.47
48 33 0.46
49 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAATAAC
Found at i:37239269 original size:2 final size:2
Alignment explanation
Indices: 37239262--37239296 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
37239252 TATACTCACG
37239262 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37239297 AGCATGTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:37246822 original size:15 final size:15
Alignment explanation
Indices: 37246781--37246843 Score: 63
Period size: 15 Copynumber: 4.2 Consensus size: 15
37246771 GAAAACCAGA
*
37246781 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
* * *
37246796 ACAGAGGAATCCAAG
1 ATAAAGAAATCCAAG
*
37246811 ATAAAGATATCCAAG
1 ATAAAGAAATCCAAG
* *
37246826 GTACAGAAATCCAAG
1 ATAAAGAAATCCAAG
37246841 ATA
1 ATA
37246844 CCATATCATA
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.51, C:0.16, G:0.17, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:37248992 original size:37 final size:37
Alignment explanation
Indices: 37248928--37249001 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
37248918 TTACAAGCCA
37248928 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
37248965 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
37249002 GACATCGATC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.85
38 1 0.03
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Done.