Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 138 of 427
Found at i:37251229 original size:28 final size:26
Alignment explanation
Indices: 37251182--37251237 Score: 60
Period size: 27 Copynumber: 2.1 Consensus size: 26
37251172 CCCCCAGTTG
* *
37251182 TAAAATTACCAAAGTACCTCCGGTTTA
1 TAAAACTACCAAAGTACCT-CGATTTA
37251209 TAAAACTACCCAAA-TATCCTCGATTTA
1 TAAAACTA-CCAAAGTA-CCTCGATTTA
37251236 TA
1 TA
37251238 GAATTACCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.30
Consensus pattern (26 bp):
TAAAACTACCAAAGTACCTCGATTTA
Found at i:37251349 original size:27 final size:27
Alignment explanation
Indices: 37251286--37251442 Score: 140
Period size: 27 Copynumber: 5.8 Consensus size: 27
37251276 TTACCCTCGA
* *
37251286 TTGTGAAATTACTAAAATACCCCT-AT
1 TTGTAAAATTACCAAAATACCCCTAAT
** * *
37251312 AGGGTAGAATTACCAAAATACCCCTAGT
1 -TTGTAAAATTACCAAAATACCCCTAAT
* **
37251340 TTGTAAAATTACCAAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTAAT
* *
37251367 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AAT
*
37251394 TTGTAAAATTACCAAAATACCCTTAAT
1 TTGTAAAATTACCAAAATACCCCTAAT
**
37251421 TTACAAAATTA-CAGAAATACCC
1 TTGTAAAATTACCA-AAATACCC
37251443 TTGACTTTCT
Statistics
Matches: 105, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 5 0.05
27 96 0.91
28 4 0.04
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAAT
Found at i:37251430 original size:54 final size:54
Alignment explanation
Indices: 37251158--37251528 Score: 186
Period size: 54 Copynumber: 6.9 Consensus size: 54
37251148 TTAGTTTATC
* * * * *
37251158 AAATTACTGAAATACCCCCAG-TTGTAAAATTACCAAAGTA-CCTCCGGTTTATA
1 AAATTACCGAAATACCCTCAGTTTGTAAAATTACCAAAATACCCT-TGGTTTACA
* * * * * **** **
37251211 AAACTACCCAAATATCCTC-GATTTATAGAATTACCGTTTTACCCTTATTTTACA
1 AAATTACCGAAATACCCTCAG-TTTGTAAAATTACCAAAATACCCTTGGTTTACA
* *** * * * *
37251265 AAATTATCGTTTTACCCTC-GATTGTGAAATTACTAAAATACCCCTATAGG-GT--A
1 AAATTACCGAAATACCCTCAGTTTGTAAAATTACCAAAATA-CCCT-T-GGTTTACA
* * ***
37251318 GAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTG
1 AAATTACCGAAATACCCTC-AGTTTGTAAAATTACCAAAATACC-CTTGGTTTACA
* **
37251372 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTAATTTACA
1 AAATTACCGAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
* * * * * *
37251426 AAATTACAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACA
1 AAATTACCGAAATACCC-TCAGTTTGT-AAAATTACCA-AAATACCCTTGGTTTACA
* ** * * *
37251482 AAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAACACCCTTG
1 AAATTACCGAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTTG
37251529 TAGGATGAAA
Statistics
Matches: 229, Mismatches: 71, Indels: 35
0.68 0.21 0.10
Matches are distributed among these distances:
51 2 0.01
52 4 0.02
53 40 0.17
54 126 0.55
55 19 0.08
56 38 0.17
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (54 bp):
AAATTACCGAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
Found at i:37251443 original size:27 final size:27
Alignment explanation
Indices: 37251372--37251500 Score: 118
Period size: 27 Copynumber: 4.7 Consensus size: 27
37251362 CTGGTTTGTG
* * **
37251372 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACAGAAATACCCTTAATTTACA
37251399 AAATTACCA-AAATACCCTTAATTTACA
1 AAATTA-CAGAAATACCCTTAATTTACA
*
37251426 AAATTACAGAAATACCCTTGACTTT-CTAA
1 AAATTACAGAAATACCCTT-AATTTAC--A
* * **
37251455 AAATTATAGAAATACCATTGGTTTACA
1 AAATTACAGAAATACCCTTAATTTACA
*
37251482 AAATTACTGAAATACCCTT
1 AAATTACAGAAATACCCTT
37251501 GGTTTGTAGA
Statistics
Matches: 84, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.02
27 55 0.65
28 8 0.10
29 19 0.23
ACGTcount: A:0.43, C:0.19, G:0.06, T:0.31
Consensus pattern (27 bp):
AAATTACAGAAATACCCTTAATTTACA
Found at i:37251598 original size:27 final size:27
Alignment explanation
Indices: 37251546--37251624 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
37251536 AAATGACTAA
*
37251546 AATACCCCTAATA-GGTAAAAAAGACCGT
1 AATACCCCT-ATAGGGT-AAAATGACCGT
* *
37251574 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTATAGGGTAAAATGACCGT
*
37251601 AATACCCCTATATGGTAAAATGAC
1 AATACCCCTATAGGGTAAAATGAC
37251625 GAATATGCCA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
27 31 0.74
28 11 0.26
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAATGACCGT
Found at i:37252473 original size:25 final size:25
Alignment explanation
Indices: 37252435--37252504 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
37252425 AGGAAGTGCT
* *
37252435 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
37252460 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
37252485 AAAAAGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
37252505 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:37252506 original size:24 final size:25
Alignment explanation
Indices: 37252435--37252517 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 25
37252425 AGGAAGTGCT
* * * *
37252435 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAAGGCTTTGCCCCAGTTTATCA
*
37252460 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAAGGCTTTGCCCCAGTTTATCA
*
37252485 AAAAAGGCTTTGCCCCAG-TTATTA
1 AAAAAGGCTTTGCCCCAGTTTATCA
*
37252509 AAAGAGGCT
1 AAAAAGGCT
37252518 AGGTGTCCAG
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 13 0.25
25 39 0.75
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAAGGCTTTGCCCCAGTTTATCA
Found at i:37252773 original size:31 final size:31
Alignment explanation
Indices: 37252726--37252806 Score: 148
Period size: 31 Copynumber: 2.7 Consensus size: 31
37252716 CTTACAGTAG
37252726 AGGCTTCGG-CCAGTGATATGATTTATGAAA
1 AGGCTTCGGCCCAGTGATATGATTTATGAAA
37252756 AGGCTTCGGCCCAGTGATATGATTTATGAAA
1 AGGCTTCGGCCCAGTGATATGATTTATGAAA
37252787 AGGCTTCGGCCCAGT-ATATG
1 AGGCTTCGGCCCAGTGATATG
37252807 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 14 0.28
31 36 0.72
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AGGCTTCGGCCCAGTGATATGATTTATGAAA
Found at i:37252854 original size:29 final size:28
Alignment explanation
Indices: 37252820--37252874 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
37252810 AGACTGAATT
* *
37252820 AGGGCTTAGGCCCATATTGCTACTGTTTA
1 AGGGCTAAGGCCCAGATTG-TACTGTTTA
37252849 AGGGCTAAGGCCCAGATTGTACTGTT
1 AGGGCTAAGGCCCAGATTGTACTGTT
37252875 ACTGAATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (28 bp):
AGGGCTAAGGCCCAGATTGTACTGTTTA
Found at i:37252894 original size:33 final size:33
Alignment explanation
Indices: 37252812--37252910 Score: 109
Period size: 33 Copynumber: 3.1 Consensus size: 33
37252802 ATATGTCGAG
*
37252812 ACTGAATTAGGGCTTAGGCCCATATTGCTACTGTT
1 ACTGAA-TAGGGCTTAGGCCCAGATTG-TACTGTT
*
37252847 --T--A-AGGGCTAAGGCCCAGATTGTACTGTT
1 ACTGAATAGGGCTTAGGCCCAGATTGTACTGTT
* *
37252875 ACTGAATAGGGCTTTGGCCCAGATTGTACTGAT
1 ACTGAATAGGGCTTAGGCCCAGATTGTACTGTT
37252908 ACT
1 ACT
37252911 ATGTTATTTA
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
28 7 0.13
29 17 0.31
30 1 0.02
31 1 0.02
32 1 0.02
33 27 0.50
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (33 bp):
ACTGAATAGGGCTTAGGCCCAGATTGTACTGTT
Found at i:37255929 original size:12 final size:12
Alignment explanation
Indices: 37255914--37255939 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37255904 GTAATGAACA
37255914 TTGGACATTTAT
1 TTGGACATTTAT
37255926 TTGGACATTTAT
1 TTGGACATTTAT
37255938 TT
1 TT
37255940 TGGTGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (12 bp):
TTGGACATTTAT
Found at i:37258185 original size:40 final size:40
Alignment explanation
Indices: 37258140--37258305 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
37258130 CGGAATATAA
37258140 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
37258180 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
37258220 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
37258259 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
37258298 CCGGATAT
1 CCGGATAT
37258306 CATTCAATTT
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 47 0.44
40 60 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:37258262 original size:39 final size:38
Alignment explanation
Indices: 37258156--37258267 Score: 143
Period size: 39 Copynumber: 2.8 Consensus size: 38
37258146 ATAATCACGT
* * *
37258156 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
*
37258196 GCACGAATGCCTTCGGGTCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
37258235 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
37258268 ATTTCCAGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
38 2 0.03
39 33 0.51
40 30 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:37258289 original size:79 final size:78
Alignment explanation
Indices: 37258156--37258305 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
37258146 ATAATCACGT
*
37258156 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
37258221 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
37258235 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
37258298 CCGGATAT
64 CCGGATAT
37258306 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:37259152 original size:17 final size:19
Alignment explanation
Indices: 37259129--37259174 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
37259119 AAGAAGCATG
37259129 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
37259147 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
37259165 AATCATGCTC
1 AATCATGCTC
37259175 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:37266171 original size:40 final size:40
Alignment explanation
Indices: 37266126--37266292 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
37266116 CGGAATATAA
37266126 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
37266166 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
37266206 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
37266246 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
37266285 CCGGATAT
1 CCGGATAT
37266293 CATTCAATTT
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
39 14 0.13
40 95 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:37267140 original size:17 final size:19
Alignment explanation
Indices: 37267117--37267162 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
37267107 AAGAAGCATG
37267117 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
37267135 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
37267153 AATCATGCTC
1 AATCATGCTC
37267163 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:37269302 original size:29 final size:29
Alignment explanation
Indices: 37269268--37269396 Score: 100
Period size: 29 Copynumber: 4.4 Consensus size: 29
37269258 TACTCGATTT
* * *
37269268 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
37269297 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
37269326 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
37269355 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
37269384 CGCACACTTAGTG
1 CGCACACTTAGTG
37269397 TCAATCTCGT
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
29 85 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:37269360 original size:58 final size:58
Alignment explanation
Indices: 37269267--37269396 Score: 145
Period size: 58 Copynumber: 2.2 Consensus size: 58
37269257 GTACTCGATT
* * * *
37269267 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGC
* * * * * *
37269325 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACATAGTGCCATACACTTCCAGC
*
37269383 ACGCACACTTAGTG
1 TCGCACACTTAGTG
37269397 TCAATCTCGT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
57 4 0.07
58 56 0.93
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGC
Found at i:37284571 original size:12 final size:12
Alignment explanation
Indices: 37284554--37284579 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37284544 GTAAGAACTA
37284554 TGTTGTTTTTAG
1 TGTTGTTTTTAG
37284566 TGTTGTTTTTAG
1 TGTTGTTTTTAG
37284578 TG
1 TG
37284580 ATGCTTCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.27, T:0.65
Consensus pattern (12 bp):
TGTTGTTTTTAG
Found at i:37296554 original size:71 final size:71
Alignment explanation
Indices: 37296470--37296633 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37296460 CGATTTGTCT
37296470 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37296535 CTTTCA
66 CTTTCA
37296541 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37296606 CTTTCA
66 CTTTCA
37296612 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
37296634 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:37296671 original size:71 final size:70
Alignment explanation
Indices: 37296470--37296667 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
37296460 CGATTTGTCT
* * * *
37296470 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37296535 CTTTCA
65 CTTTCA
* * * *
37296541 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37296606 CTTTCA
65 CTTTCA
* *
37296612 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
37296668 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:37303649 original size:71 final size:71
Alignment explanation
Indices: 37303565--37303728 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37303555 CGATTTGTCT
37303565 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37303630 CTTTCA
66 CTTTCA
37303636 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37303701 CTTTCA
66 CTTTCA
37303707 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
37303729 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:37303766 original size:71 final size:70
Alignment explanation
Indices: 37303565--37303762 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
37303555 CGATTTGTCT
* * * *
37303565 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37303630 CTTTCA
65 CTTTCA
* * * *
37303636 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37303701 CTTTCA
65 CTTTCA
* *
37303707 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
37303763 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:37306515 original size:28 final size:29
Alignment explanation
Indices: 37306444--37306545 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
37306434 GTGACGAGAT
37306444 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
37306473 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
37306502 T-GCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
37306530 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
37306546 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 24 0.37
29 41 0.63
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:37314416 original size:29 final size:29
Alignment explanation
Indices: 37314383--37314485 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
37314373 GTGACGAGAT
37314383 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
37314412 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** *
37314441 TAGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
37314470 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
37314486 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:37323471 original size:40 final size:40
Alignment explanation
Indices: 37323228--37323450 Score: 401
Period size: 40 Copynumber: 5.6 Consensus size: 40
37323218 TGGATGATAA
37323228 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37323268 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37323308 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37323348 CCGGGCTAAGTCCCGAAGGCATTTGTTCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37323388 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37323428 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
37323451 CGAGCAAGTA
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 177 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:37331458 original size:40 final size:40
Alignment explanation
Indices: 37331403--37331540 Score: 208
Period size: 40 Copynumber: 3.5 Consensus size: 40
37331393 TGGATGATAA
37331403 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
37331443 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
37331483 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
37331523 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37331541 TACTTGGCTT
Statistics
Matches: 91, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 15 0.16
40 76 0.84
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:37333036 original size:69 final size:70
Alignment explanation
Indices: 37332904--37333036 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
37332894 CAGTTTATTA
* * * * *
37332904 CTAATTAATTTGCTGCTGTAATGCTATAAATTATTGGTTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
37332969 CTTAG
66 CTTAG
37332974 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
37333037 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.38
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:37334886 original size:48 final size:48
Alignment explanation
Indices: 37334815--37335100 Score: 468
Period size: 48 Copynumber: 6.0 Consensus size: 48
37334805 CACAAGATAA
37334815 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
37334863 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
37334911 CGATATG--TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
37334957 GGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
*
37335007 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
37335055 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
37335101 GGAGGTGTGG
Statistics
Matches: 225, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
46 45 0.20
48 133 0.59
49 4 0.02
50 43 0.19
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:37334934 original size:94 final size:95
Alignment explanation
Indices: 37334815--37335100 Score: 457
Period size: 94 Copynumber: 3.0 Consensus size: 95
37334805 CACAAGATAA
37334815 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATG-ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
37334880 AAAGCCGAATGGCTAATGTGAAATATGTATG
65 AAAGCCGAATGGCTAATGTGAAATATGTATG
* *
37334911 CGATATG-TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTA
1 AGATATGATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
*
37334975 AAGCCGAATGGCTAATGTGAAATATATATATG
66 AAGCCGAATGGCTAATGTG-AA-ATATGTATG
* *
37335007 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATACGTATATGTGGT
1 AGATATG-ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* * *
37335072 AAAGCCGAAGGGCTAGTGTGAAGTATGTA
65 AAAGCCGAATGGCTAATGTGAAATATGTA
37335101 GGAGGTGTGG
Statistics
Matches: 175, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
94 75 0.43
95 2 0.01
96 25 0.14
97 2 0.01
98 71 0.41
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (95 bp):
AGATATGATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
AAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:37335320 original size:74 final size:74
Alignment explanation
Indices: 37335236--37335387 Score: 259
Period size: 74 Copynumber: 2.1 Consensus size: 74
37335226 ACATGAAACT
37335236 TGGAAATATATTCCGGGTAAGACCCGATGACTACATGTGGAGATTATGTCCGGGTAAGACCCGAT
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACATGTGGAGATTATGTCCGGGTAAGACCCGAT
*
37335301 GACTACGTG
66 AACTACGTG
* * *
37335310 TGGAAATATATTCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGAT
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACATGTGGAGATTATGTCCGGGTAAGACCCGAT
*
37335375 AACTTCGTG
66 AACTACGTG
37335384 TGGA
1 TGGA
37335388 GATTTCATCT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (74 bp):
TGGAAATATATTCCGGGTAAGACCCGATGACTACATGTGGAGATTATGTCCGGGTAAGACCCGAT
AACTACGTG
Found at i:37335392 original size:37 final size:37
Alignment explanation
Indices: 37335247--37335391 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
37335237 GGAAATATAT
*
37335247 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
37335284 TCCGGGTAAGACCCGATGACTACGTGTGGAAATATAT-
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAT-TATG
* *
37335321 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
37335358 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
37335392 TCATCTGAGC
Statistics
Matches: 98, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
36 2 0.02
37 93 0.95
38 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:37338856 original size:33 final size:33
Alignment explanation
Indices: 37338814--37338880 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
37338804 TCAAACCAAG
37338814 AATTAAGAAGACATAATTTAGAACAAGAAACTA
1 AATTAAGAAGACATAATTTAGAACAAGAAACTA
37338847 AATTAAGAAGACATAATTTAGAACAAGAAACTA
1 AATTAAGAAGACATAATTTAGAACAAGAAACTA
37338880 A
1 A
37338881 GTGTTTATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (33 bp):
AATTAAGAAGACATAATTTAGAACAAGAAACTA
Found at i:37345287 original size:14 final size:14
Alignment explanation
Indices: 37345268--37345294 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37345258 ACAAATATTT
37345268 TCATATCATATCAA
1 TCATATCATATCAA
37345282 TCATATCATATCA
1 TCATATCATATCA
37345295 TTTTGAACAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (14 bp):
TCATATCATATCAA
Found at i:37352182 original size:3 final size:3
Alignment explanation
Indices: 37352174--37352201 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
37352164 TTACATCTTC
37352174 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
37352202 TACCAAACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:37364035 original size:25 final size:26
Alignment explanation
Indices: 37363973--37364035 Score: 76
Period size: 25 Copynumber: 2.4 Consensus size: 26
37363963 TATTTTCTCA
*
37363973 AAAATTTAAAAATTATTAATTATTAAAT
1 AAAA-TTAAAAATTA-TAATAATTAAAT
37364001 -AAATTGAAAAATTA-AATAATTAAAT
1 AAAATT-AAAAATTATAATAATTAAAT
37364026 AAAATTAAAA
1 AAAATTAAAA
37364036 TTTAGGAGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
25 14 0.44
26 7 0.22
27 11 0.34
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (26 bp):
AAAATTAAAAATTATAATAATTAAAT
Found at i:37372978 original size:28 final size:29
Alignment explanation
Indices: 37372938--37373036 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
37372928 GTAATAAGCC
*
37372938 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
37372966 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
37372994 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
37373023 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37373037 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:37375298 original size:16 final size:15
Alignment explanation
Indices: 37375269--37375299 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
37375259 ATTGGATATA
37375269 TAAATTAAAATTAAT
1 TAAATTAAAATTAAT
37375284 TAAATTAAGAATTAAT
1 TAAATTAA-AATTAAT
37375300 ACACATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (15 bp):
TAAATTAAAATTAAT
Found at i:37388700 original size:33 final size:33
Alignment explanation
Indices: 37388663--37388729 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
37388653 GCACCAGCGG
37388663 CTTTTATGGATATGATGAACTGAGTGTTCCAGC
1 CTTTTATGGATATGATGAACTGAGTGTTCCAGC
* *
37388696 CTTTTATGGATATGCTGAACTGAGTGTTCTAGC
1 CTTTTATGGATATGATGAACTGAGTGTTCCAGC
37388729 C
1 C
37388730 CTATCTGGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.37
Consensus pattern (33 bp):
CTTTTATGGATATGATGAACTGAGTGTTCCAGC
Found at i:37388739 original size:33 final size:33
Alignment explanation
Indices: 37388667--37388739 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
37388657 CAGCGGCTTT
* *
37388667 TATGGATATGATGAACTGAGTGTTCCAGCCTTT
1 TATGGATATGATGAACTGAGTGTTCCAGCCCTA
* *
37388700 TATGGATATGCTGAACTGAGTGTTCTAGCCCTA
1 TATGGATATGATGAACTGAGTGTTCCAGCCCTA
*
37388733 TCTGGAT
1 TATGGAT
37388740 CAGTTCGTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (33 bp):
TATGGATATGATGAACTGAGTGTTCCAGCCCTA
Found at i:37397330 original size:29 final size:29
Alignment explanation
Indices: 37397298--37397400 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
37397288 GTGACGAGAT
* * *
37397298 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
37397327 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * * *
37397356 TGGCACTATGTGTACGGGCTT-GAATCACA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
37397385 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37397401 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
28 3 0.05
29 57 0.95
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:37407890 original size:48 final size:48
Alignment explanation
Indices: 37407825--37407966 Score: 203
Period size: 48 Copynumber: 3.0 Consensus size: 48
37407815 GTTATGTCTA
* * *
37407825 ATCCCATGTAAGACCATGTTTGGGACATGGAATTGGAATTGATATGTG
1 ATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGTG
* * *
37407873 ATCCCTTGTAAGACCATGTTTGGGACATGGCAGTGGCATCGATATTTG
1 ATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGTG
* * *
37407921 ATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATG
1 ATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATG
37407967 AGACATTGTG
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (48 bp):
ATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGTG
Found at i:37411631 original size:22 final size:22
Alignment explanation
Indices: 37411606--37411652 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
37411596 GTGAATTTTA
37411606 ATGCTTT-ATTACTATT-ATGAGT
1 ATGCTTTGATTA-T-TTCATGAGT
37411628 ATGCTTTGATTATTTCATGAGT
1 ATGCTTTGATTATTTCATGAGT
37411650 ATG
1 ATG
37411653 TGATTGGTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 2 0.09
22 17 0.74
23 4 0.17
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.49
Consensus pattern (22 bp):
ATGCTTTGATTATTTCATGAGT
Found at i:37413351 original size:20 final size:20
Alignment explanation
Indices: 37413326--37413392 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
37413316 GATATGATAT
*
37413326 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
37413346 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
*
37413366 ATATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
37413386 ACATGAT
1 ACATGAT
37413393 GTATTCATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
20 39 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:37413510 original size:25 final size:25
Alignment explanation
Indices: 37413442--37413564 Score: 138
Period size: 26 Copynumber: 4.8 Consensus size: 25
37413432 GAGGAAGTGC
* **
37413442 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTACCG
*
37413468 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTT-TGCCCCAGTTTACCG
* * **
37413494 AAAAAGGCTTATGCCCAAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTACCG
*
37413520 AAAAGGGCTTTGCCTCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
37413545 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
37413565 ATTAAAAGAG
Statistics
Matches: 82, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
25 30 0.37
26 52 0.63
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:37413518 original size:52 final size:51
Alignment explanation
Indices: 37413442--37413572 Score: 180
Period size: 52 Copynumber: 2.6 Consensus size: 51
37413432 GAGGAAGTGC
37413442 AAAAGGGCTTATGCCCCAA-TTTATTGAAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATG-CCCAAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCA
* * *
37413494 AAAAAGGCTTATGCCCAAGTTTATTGAAAAGGGCTTTGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCAAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCA
*
37413545 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAG
1 AAAAGGGCTTATGCCCAAGTTTATTGAAAAG
37413573 AGGCCAGGCC
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
48 5 0.07
49 5 0.07
50 7 0.10
51 27 0.37
52 29 0.40
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCAAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCA
Found at i:37413769 original size:42 final size:42
Alignment explanation
Indices: 37413710--37413801 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
37413700 TAGTCTCCCC
* ** *
37413710 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
37413752 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
37413794 AAATGGGC
1 AAATGGGC
37413802 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:37413860 original size:31 final size:31
Alignment explanation
Indices: 37413825--37413939 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
37413815 CGTTTACAGT
*
37413825 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
37413856 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
37413887 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
37413918 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
37413940 TCAAGACTAA
Statistics
Matches: 80, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.06
31 75 0.94
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:37416682 original size:14 final size:15
Alignment explanation
Indices: 37416662--37416700 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
37416652 CCCTCTCTCT
37416662 ATTTTTCTTTC-TTC
1 ATTTTTCTTTCTTTC
*
37416676 CTTTTTC-TTCTTTC
1 ATTTTTCTTTCTTTC
37416690 ATTTTTCTTTC
1 ATTTTTCTTTC
37416701 CATCAAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 3 0.14
14 15 0.71
15 3 0.14
ACGTcount: A:0.05, C:0.23, G:0.00, T:0.72
Consensus pattern (15 bp):
ATTTTTCTTTCTTTC
Found at i:37429005 original size:40 final size:40
Alignment explanation
Indices: 37428839--37429032 Score: 201
Period size: 40 Copynumber: 4.8 Consensus size: 40
37428829 CCGAATGGTG
* * * * *
37428839 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAA
* * *
37428880 TCCGGGTCAATTCCCAAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
* * *
37428920 TCTGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
* **
37428960 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AA
* * * *
37429001 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGT
37429033 CGCCATATCC
Statistics
Matches: 129, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
40 103 0.80
41 26 0.20
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
Found at i:37436984 original size:39 final size:40
Alignment explanation
Indices: 37436892--37437042 Score: 189
Period size: 39 Copynumber: 3.8 Consensus size: 40
37436882 TCGAATGGTG
* * * * *
37436892 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAA
* *
37436933 TCCGGGTCAATTCCC-AAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
*
37436972 TCCGGGTTAATTCCCGAAGGCA-TTGTGCGAGTTACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
* *
37437011 TCTGGGTTAAGTCCCGAAGGCATTTGCGCGAG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
37437043 CTATTATAAC
Statistics
Matches: 97, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
39 59 0.61
40 26 0.27
41 12 0.12
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
Found at i:37437036 original size:79 final size:80
Alignment explanation
Indices: 37436892--37437042 Score: 189
Period size: 79 Copynumber: 1.9 Consensus size: 80
37436882 TCGAATGGTG
* * *
37436892 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTATTGTGCTAAGTGACCAAATCCGGGTCAAGTCCCAAGGCATTT
*
37436957 GTGCGAGTTACCAAA
66 GCGCGAGTTACCAAA
* * * * * *
37436972 TCCGGGTTAATTCCCGAAGGC-ATTGTGC-GAGTTACCAAATCTGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCTATTGTGCTAAGTGACCAAATCCGGGTCAAGTCCC-AAGGCATT
37437035 TGCGCGAG
65 TGCGCGAG
37437043 CTATTATAAC
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
78 20 0.33
79 21 0.35
80 19 0.32
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTATTGTGCTAAGTGACCAAATCCGGGTCAAGTCCCAAGGCATTT
GCGCGAGTTACCAAA
Found at i:37437056 original size:79 final size:80
Alignment explanation
Indices: 37436892--37437072 Score: 188
Period size: 79 Copynumber: 2.3 Consensus size: 80
37436882 TCGAATGGTG
* * *
37436892 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTATTGTGCTAAGTGACCAAATCCGGGTCAAGTCCCAAGGCATTT
* *
37436957 GTGCGAGTTACCAAA
66 GCGCGAGCTACCAAA
* * * * * *
37436972 TCCGGGTTAATTCCCGAAGGC-ATTGTGC-GAGTTACCAAATCTGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCTATTGTGCTAAGTGACCAAATCCGGGTCAAGTCCC-AAGGCATT
**
37437035 TGCGCGAGCTATTATAA
65 TGCGCGAGCTACCA-AA
* *
37437052 -CCGGGCTATGTCCTGAAGGCT
1 TCCGGGCTAAGTCCCGAAGGCT
37437073 TTTGAGCGAG
Statistics
Matches: 81, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
78 20 0.25
79 40 0.49
80 21 0.26
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTATTGTGCTAAGTGACCAAATCCGGGTCAAGTCCCAAGGCATTT
GCGCGAGCTACCAAA
Found at i:37439166 original size:15 final size:16
Alignment explanation
Indices: 37439146--37439175 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
37439136 TTGTTACTGT
37439146 TTTAAACT-TTTAATC
1 TTTAAACTATTTAATC
37439161 TTTAAACTATTTAAT
1 TTTAAACTATTTAAT
37439176 TTGGGTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTAAACTATTTAATC
Found at i:37448819 original size:11 final size:11
Alignment explanation
Indices: 37448803--37448827 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37448793 ATATGATATT
37448803 TTATTATTTTA
1 TTATTATTTTA
37448814 TTATTATTTTA
1 TTATTATTTTA
37448825 TTA
1 TTA
37448828 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:37451666 original size:47 final size:47
Alignment explanation
Indices: 37451612--37451731 Score: 170
Period size: 47 Copynumber: 2.6 Consensus size: 47
37451602 TTTGAGTTCC
37451612 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAA-TCAGGCATCA
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAACT-AGGCATCA
* * *
37451659 GAACTCGTTAAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAACTAGGCATCA
* * *
37451706 GAATTCATTGAATTGAGTCCGAGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC
37451732 ACTTATGGAT
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
47 64 0.98
48 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAACTAGGCATCA
Found at i:37453318 original size:11 final size:11
Alignment explanation
Indices: 37453302--37453326 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37453292 ATATGATATT
37453302 TTATTATTTTA
1 TTATTATTTTA
37453313 TTATTATTTTA
1 TTATTATTTTA
37453324 TTA
1 TTA
37453327 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:37458346 original size:46 final size:46
Alignment explanation
Indices: 37458296--37458471 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
37458286 TGGTTGAGCA
*
37458296 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
37458342 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
37458389 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
37458435 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37458472 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
45 3 0.03
46 65 0.59
47 29 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:37458452 original size:93 final size:93
Alignment explanation
Indices: 37458293--37458463 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
37458283 GGATGGTTGA
* *
37458293 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
37458358 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
37458386 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
37458451 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
37458464 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37461399 original size:15 final size:15
Alignment explanation
Indices: 37461379--37461447 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
37461369 GTATCTTGGG
37461379 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
37461394 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
37461409 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
37461424 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
37461439 TTTCTTTAT
1 TTTCTTTAT
37461448 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:37461448 original size:30 final size:30
Alignment explanation
Indices: 37461370--37461457 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
37461360 CATAGTATCG
* * * *
37461370 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
37461400 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
37461430 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
37461458 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:37487251 original size:24 final size:26
Alignment explanation
Indices: 37487204--37487253 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
37487194 AGCCATGAAA
37487204 TCGCACACTTAGTGCTTAATATTTTCCT
1 TCGCACACTTAGTG--TAATATTTTCCT
37487232 TCGCACACTTAGTG-AA-ATTTTC
1 TCGCACACTTAGTGTAATATTTTC
37487254 ATGTCCATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 6 0.27
25 2 0.09
28 14 0.64
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (26 bp):
TCGCACACTTAGTGTAATATTTTCCT
Found at i:37489348 original size:20 final size:19
Alignment explanation
Indices: 37489304--37489360 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
37489294 AACACTAAGA
* *
37489304 ACCACTCCATTCACTTTCTT
1 ACCA-TCCATTTACTTACTT
37489324 ACCATTCCATTTACTTACTT
1 ACCA-TCCATTTACTTACTT
*
37489344 TCCATCTCATTTACTTA
1 ACCATC-CATTTACTTA
37489361 TCATAAACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.23, C:0.33, G:0.00, T:0.44
Consensus pattern (19 bp):
ACCATCCATTTACTTACTT
Found at i:37489965 original size:87 final size:87
Alignment explanation
Indices: 37489874--37490047 Score: 285
Period size: 87 Copynumber: 2.0 Consensus size: 87
37489864 GAAACTTCCA
*
37489874 TTTCAACCTTTTCATAAAGGCATGACATAGTTTCTTTTGATCACTTGTCATGCATTTCCTTTACA
1 TTTCAACCTTTTCATAAAGACATGACATAGTTTCTTTTGATCACTTGTCATGCATTTCCTTTACA
* *
37489939 TGGCCGTTAAACCGGTTAGAAT
66 CGCCCGTTAAACCGGTTAGAAT
* * *
37489961 TTTCAACCTTTTCATAAATACATGACATAGTTTCTTTTGATCACTTTTCATTCATTTCCTTTACA
1 TTTCAACCTTTTCATAAAGACATGACATAGTTTCTTTTGATCACTTGTCATGCATTTCCTTTACA
*
37490026 CGCCCGTTAAACCGTTTAGAAT
66 CGCCCGTTAAACCGGTTAGAAT
37490048 ATCAGTGGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 80 1.00
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.41
Consensus pattern (87 bp):
TTTCAACCTTTTCATAAAGACATGACATAGTTTCTTTTGATCACTTGTCATGCATTTCCTTTACA
CGCCCGTTAAACCGGTTAGAAT
Found at i:37492629 original size:13 final size:14
Alignment explanation
Indices: 37492599--37492631 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
37492589 GTATTTAAAC
*
37492599 TAATTTTTTAATAT
1 TAATTTTTTAAGAT
37492613 TAATTTTTTAAGA-
1 TAATTTTTTAAGAT
37492626 TAATTT
1 TAATTT
37492632 AATTATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (14 bp):
TAATTTTTTAAGAT
Found at i:37492629 original size:19 final size:19
Alignment explanation
Indices: 37492607--37492657 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
37492597 ACTAATTTTT
37492607 TAATATTAA-TTTTTTAAGA
1 TAATATTAAGTTTTTTAA-A
*
37492626 TAAT-TTAATTATTTTTAAA
1 TAATATTAAGT-TTTTTAAA
37492645 T-ATATTAAGTTTT
1 TAATATTAAGTTTT
37492658 ATCCAAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 9 0.32
19 12 0.43
20 7 0.25
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (19 bp):
TAATATTAAGTTTTTTAAA
Found at i:37493009 original size:20 final size:20
Alignment explanation
Indices: 37492962--37493009 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
37492952 ATAATAATAT
37492962 TAAAATA-TTAAACACATTA
1 TAAAATATTTAAACACATTA
* *
37492981 TATATTATTTACAA-ACATTA
1 TAAAATATTTA-AACACATTA
37493001 TAAAATATT
1 TAAAATATT
37493010 ATTTTAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 5 0.22
20 16 0.70
21 2 0.09
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (20 bp):
TAAAATATTTAAACACATTA
Found at i:37494432 original size:48 final size:48
Alignment explanation
Indices: 37494358--37494584 Score: 270
Period size: 48 Copynumber: 4.9 Consensus size: 48
37494348 GGCTTATGTA
37494358 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * * * *
37494406 TGATCCCATGTAAGACCATATATGGGATATGGCCTTGGCATCTATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
** *
37494454 TGATTTCGTGTAAGACCATGTCTGGG--A---CA-TGGCATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * *
37494496 AGA-CATCATGTAAGACCATGTCTGGGACATGGCATTGACATCGATATG
1 TGATC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * *
37494544 TGATCCCATGTAAGACCATATCTGGGATACGGCATTGGCAT
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
37494585 TTTACTATGT
Statistics
Matches: 149, Mismatches: 22, Indels: 16
0.80 0.12 0.09
Matches are distributed among these distances:
42 34 0.23
43 1 0.01
44 1 0.01
46 1 0.01
47 2 0.01
48 109 0.73
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
Found at i:37494528 original size:90 final size:92
Alignment explanation
Indices: 37494358--37494570 Score: 252
Period size: 90 Copynumber: 2.3 Consensus size: 92
37494348 GGCTTATGTA
*
37494358 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACC
1 TGATCCCATGTAAGACCATGTCTGGG--A--GCATTGGCATCGATATGAGATCCCATGTAAGACC
* * * *
37494423 ATATATGGGATATGGCCTTGGCATCTATATG
62 ATATATGGGACATGGCATTGACATCGATATG
** * * *
37494454 TGATTTCGTGTAAGACCATGTCTGGGA-CA-TGGCATCGATATGAGA-CATCATGTAAGACCATG
1 TGATCCCATGTAAGACCATGTCTGGGAGCATTGGCATCGATATGAGATC-CCATGTAAGACCATA
*
37494516 TCTGGGACATGGCATTGACATCGATATG
65 TATGGGACATGGCATTGACATCGATATG
*
37494544 TGATCCCATGTAAGACCATATCTGGGA
1 TGATCCCATGTAAGACCATGTCTGGGA
37494571 TACGGCATTG
Statistics
Matches: 101, Mismatches: 15, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
89 1 0.01
90 74 0.73
91 2 0.02
94 1 0.01
96 23 0.23
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (92 bp):
TGATCCCATGTAAGACCATGTCTGGGAGCATTGGCATCGATATGAGATCCCATGTAAGACCATAT
ATGGGACATGGCATTGACATCGATATG
Found at i:37502279 original size:48 final size:48
Alignment explanation
Indices: 37502220--37502442 Score: 201
Period size: 48 Copynumber: 4.8 Consensus size: 48
37502210 TAAGGTTATG
*
37502220 TGTGATCCCATGTAAGACCATGTCTAGGACATGACATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATA
* * * * *
37502268 TGTGATGCCATGTAAGACCATATTTGGGATATGACATTGGCATCTATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATA
** * *
37502316 TGTGATTTCGTGTAAAACCATGTCT-GGACATG--A----CATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATA
* * * * ** *
37502357 TGAGA-CATCATATTAGACCATGTCTGGGACATGGTATTGACATCGATA
1 TGTGATC-CCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATA
* * *
37502405 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGACATT
37502443 ATCATCTTAC
Statistics
Matches: 139, Mismatches: 27, Indels: 18
0.76 0.15 0.10
Matches are distributed among these distances:
41 25 0.18
42 7 0.05
44 1 0.01
45 1 0.01
47 6 0.04
48 98 0.71
49 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATA
Found at i:37504512 original size:23 final size:22
Alignment explanation
Indices: 37504464--37504514 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 22
37504454 TTTAATTATA
*
37504464 ATTAAAGAAAATATCATGTGTC
1 ATTAAAGAAAATATCACGTGTC
* * *
37504486 ATTAAAGAGAAGTGTCACGTGTT
1 ATTAAAGA-AAATATCACGTGTC
37504509 ATTAAA
1 ATTAAA
37504515 TTAAACCGTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.43, C:0.08, G:0.18, T:0.31
Consensus pattern (22 bp):
ATTAAAGAAAATATCACGTGTC
Found at i:37504938 original size:29 final size:29
Alignment explanation
Indices: 37504882--37504939 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
37504872 TTAATCATAA
* * * *
37504882 TTATTGGATTAGGTTGATTTTTGTAAAAT
1 TTATTGGATTAAGTAGATTTTAGAAAAAT
37504911 TTATTGGATTAAGTAGATTTTAGAAAAAT
1 TTATTGGATTAAGTAGATTTTAGAAAAAT
37504940 GCATTTAGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (29 bp):
TTATTGGATTAAGTAGATTTTAGAAAAAT
Found at i:37505457 original size:17 final size:16
Alignment explanation
Indices: 37505435--37505475 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
37505425 GTTTTGATGA
37505435 TATTTTTTAATT-ATT
1 TATTTTTTAATTAATT
*
37505450 TTTATTTTTAATTAATT
1 TAT-TTTTTAATTAATT
37505467 TATTTTTTA
1 TATTTTTTA
37505476 TTTTTAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 15 0.68
17 5 0.23
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TATTTTTTAATTAATT
Found at i:37505476 original size:22 final size:20
Alignment explanation
Indices: 37505441--37505482 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
37505431 ATGATATTTT
37505441 TTAATTATTTTTATTTTTAA
1 TTAATTATTTTTATTTTTAA
37505461 TTAATTTATTTTTTATTTTTAA
1 TTAA-TTA-TTTTTATTTTTAA
37505483 ATCTTTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 4 0.20
21 3 0.15
22 13 0.65
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
TTAATTATTTTTATTTTTAA
Found at i:37505756 original size:144 final size:141
Alignment explanation
Indices: 37505590--37505875 Score: 353
Period size: 144 Copynumber: 2.0 Consensus size: 141
37505580 AATATGAAAT
* * * ** *
37505590 AAAAATACAAATGTGAGTAGTAGAGGAACCGAACTCAAGACTTAAAGATATAATTACAACTATCT
1 AAAAACACAAATATGAGGAGTAGAAAAACCAAACTCAAGACTTAAAGATATAATTACAACTATCT
* * *
37505655 AACCATCTAA-TGGAAA-AACTAGTATGTTAAAAAACATTAATTAAAAATTTAAAAAG-TTTAAA
66 AACCATCTAACT--AAATAACTAATATGTT-AAAAA-ATTAATTAAAAA-ATAAAAAGCTTGAAA
37505717 GCAACATGAAATAAAAA
126 -CAACATGAAATAAAAA
* * * * *
37505734 AAAAACACAAATATGAGGAGTAGAAAAATCAAACTCGAGACTTAAGGATGTAATTGCAACTATCT
1 AAAAACACAAATATGAGGAGTAGAAAAACCAAACTCAAGACTTAAAGATATAATTACAACTATCT
* *
37505799 AACCATCTAACTAAATAACTAATATGTTAAAAAATTAATTAAAAAATAAAAAGCTTGAAATAATA
66 AACCATCTAACTAAATAACTAATATGTTAAAAAATTAATTAAAAAATAAAAAGCTTGAAACAACA
37505864 TGAAATAAAAA
131 TGAAATAAAAA
37505875 A
1 A
37505876 TACAAATGTG
Statistics
Matches: 123, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
141 22 0.18
142 17 0.14
143 8 0.07
144 75 0.61
145 1 0.01
ACGTcount: A:0.54, C:0.11, G:0.11, T:0.24
Consensus pattern (141 bp):
AAAAACACAAATATGAGGAGTAGAAAAACCAAACTCAAGACTTAAAGATATAATTACAACTATCT
AACCATCTAACTAAATAACTAATATGTTAAAAAATTAATTAAAAAATAAAAAGCTTGAAACAACA
TGAAATAAAAA
Found at i:37511854 original size:17 final size:19
Alignment explanation
Indices: 37511812--37511855 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
37511802 ATGAAATTTT
*
37511812 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
37511831 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
37511849 AA-TATTA
1 AATTATTA
37511856 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:37514022 original size:20 final size:20
Alignment explanation
Indices: 37513992--37514036 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
37513982 CTGTTTTATT
37513992 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
37514011 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
37514031 ATGGGC
1 ATGGGC
37514037 AAGGCCTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:37514156 original size:28 final size:27
Alignment explanation
Indices: 37514065--37514177 Score: 77
Period size: 28 Copynumber: 3.9 Consensus size: 27
37514055 ACTTGTAATA
* *
37514065 GGGCTACGACCCAGATTGATACTGATAT
1 GGGCTA-GGCCCAGATTAATACTGATAT
* *
37514093 GGGCTAGGCCCAGTATACTATGTTACTG-TAAG
1 GGGCTAGGCCCAG-AT--TA--ATACTGAT-AT
37514125 GGGCTATGGCCCAGATTAATACTGATAT
1 GGGCTA-GGCCCAGATTAATACTGATAT
* *
37514153 GGGCTAAGGCCTAG-TTAACACTGAT
1 GGGCT-AGGCCCAGATTAATACTGAT
37514178 TTCTGAATAG
Statistics
Matches: 68, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
27 16 0.24
28 25 0.37
29 2 0.03
30 3 0.04
31 1 0.01
32 14 0.21
33 7 0.10
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (27 bp):
GGGCTAGGCCCAGATTAATACTGATAT
Found at i:37516342 original size:17 final size:19
Alignment explanation
Indices: 37516300--37516343 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
37516290 ATGAAATTTT
*
37516300 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
37516319 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
37516337 AA-TATTA
1 AATTATTA
37516344 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:37518505 original size:20 final size:20
Alignment explanation
Indices: 37518475--37518519 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
37518465 CTGTTTTATT
37518475 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
37518494 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
37518514 ATGGGC
1 ATGGGC
37518520 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:37518660 original size:27 final size:28
Alignment explanation
Indices: 37518608--37518660 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
37518598 TTACTGTAAG
* *
37518608 GGGCTATGGCCCAGATTAATACTGATAT
1 GGGCTAAGGCCCAGATTAACACTGATAT
*
37518636 GGGCTAAGGCCTAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAACACTGAT
37518661 TTCTGAATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAACACTGATAT
Found at i:37523445 original size:2 final size:2
Alignment explanation
Indices: 37523438--37523469 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
37523428 GCTATATGTG
37523438 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37523470 ATGAAAATAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:37525905 original size:89 final size:89
Alignment explanation
Indices: 37525736--37525905 Score: 209
Period size: 89 Copynumber: 1.9 Consensus size: 89
37525726 ATTCATTTTC
** * * *
37525736 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTCATCAATCTTCAGCCTGTTACCCTACTGTTT
1 GATCTGTTTCCCTACTGCTTAGGGGAATAAGATTCATAAATCCTCAGCCTGTTACCCTACTGCTT
* *
37525801 AAGGGTTTAAGGCTTGTCACCTTT
66 AAGGGGTTAAAGCTTGTCACCTTT
* * * *
37525825 GATCTGTTTCCCTACTTCTTAGGGTAATAAGA-TCTGTAAATCCTCAGCTTGTTACCCTACTGCT
1 GATCTGTTTCCCTACTGCTTAGGGGAATAAGATTC-ATAAATCCTCAGCCTGTTACCCTACTGCT
37525889 T-AGGGAGTTAAAGCTTG
65 TAAGGG-GTTAAAGCTTG
37525906 GTGGTTTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
88 6 0.09
89 62 0.91
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (89 bp):
GATCTGTTTCCCTACTGCTTAGGGGAATAAGATTCATAAATCCTCAGCCTGTTACCCTACTGCTT
AAGGGGTTAAAGCTTGTCACCTTT
Found at i:37541462 original size:20 final size:19
Alignment explanation
Indices: 37541434--37541486 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
37541424 AATATTAAGT
*
37541434 ATATATATATTATTATATAC
1 ATATGTATATTATT-TATAC
*
37541454 ATATGTATATTATTTGTAC
1 ATATGTATATTATTTATAC
*
37541473 AAATGTA-ATTATTT
1 ATATGTATATTATTT
37541487 TTACCATACA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
18 7 0.23
19 10 0.33
20 13 0.43
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.51
Consensus pattern (19 bp):
ATATGTATATTATTTATAC
Found at i:37541485 original size:18 final size:19
Alignment explanation
Indices: 37541439--37541486 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
37541429 TAAGTATATA
* *
37541439 TATATTATTATATACATATG
1 TATATTATT-TGTACAAATG
37541459 TATATTATTTGTACAAATG
1 TATATTATTTGTACAAATG
37541478 TA-ATTATTT
1 TATATTATTT
37541487 TTACCATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 7 0.27
19 10 0.38
20 9 0.35
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (19 bp):
TATATTATTTGTACAAATG
Found at i:37547177 original size:28 final size:26
Alignment explanation
Indices: 37547145--37547225 Score: 90
Period size: 28 Copynumber: 3.0 Consensus size: 26
37547135 AAAATAATGG
*
37547145 CAAAATTATAAAATCTAGAAAACATAGA
1 CAAAACTATAAAATCTA-AAAA-ATAGA
37547173 CAAAACTATAAAATCTAAAAAATAGTA
1 CAAAACTATAAAATCTAAAAAATAG-A
* * *
37547200 GTAAAACTATAAAATTTGAAAAATAG
1 -CAAAACTATAAAATCTAAAAAATAG
37547226 TGGTAAAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
26 4 0.09
27 5 0.11
28 38 0.81
ACGTcount: A:0.60, C:0.09, G:0.07, T:0.23
Consensus pattern (26 bp):
CAAAACTATAAAATCTAAAAAATAGA
Found at i:37547226 original size:28 final size:28
Alignment explanation
Indices: 37547174--37547250 Score: 109
Period size: 28 Copynumber: 2.8 Consensus size: 28
37547164 AAACATAGAC
*
37547174 AAAACTATAAAATCTAAAAAATAGTAGT
1 AAAACTATAAAATTTAAAAAATAGTAGT
* *
37547202 AAAACTATAAAATTTGAAAAATAGTGGT
1 AAAACTATAAAATTTAAAAAATAGTAGT
* *
37547230 AAAATTGTAAAATTTAAAAAA
1 AAAACTATAAAATTTAAAAAA
37547251 CAGAGGACGC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.60, C:0.04, G:0.09, T:0.27
Consensus pattern (28 bp):
AAAACTATAAAATTTAAAAAATAGTAGT
Found at i:37549643 original size:20 final size:20
Alignment explanation
Indices: 37549604--37549643 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37549594 GAGGTAAATA
*
37549604 TATTTTATTTTTTCATTTAT
1 TATTTTATTTTTTCAATTAT
*
37549624 TATTTTATTTTTTGAATTAT
1 TATTTTATTTTTTCAATTAT
37549644 ATTATGAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (20 bp):
TATTTTATTTTTTCAATTAT
Found at i:37550041 original size:7 final size:7
Alignment explanation
Indices: 37550031--37550080 Score: 73
Period size: 7 Copynumber: 6.7 Consensus size: 7
37550021 TTCTTAATTC
37550031 TTAAAAA
1 TTAAAAA
37550038 TTAAAAA
1 TTAAAAA
37550045 TTAAAAA
1 TTAAAAA
37550052 TTAAAAA
1 TTAAAAA
37550059 TTAAAAAA
1 TT-AAAAA
37550067 CTTCAAAAA
1 -TT-AAAAA
37550076 TTAAA
1 TTAAA
37550081 TATTTTATTC
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
7 26 0.65
8 7 0.17
9 7 0.17
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (7 bp):
TTAAAAA
Found at i:37556111 original size:79 final size:81
Alignment explanation
Indices: 37556010--37556194 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
37556000 ACGACTCGCT
** * *
37556010 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
37556073 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
37556090 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
37556154 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
37556170 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37556195 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:37556194 original size:40 final size:39
Alignment explanation
Indices: 37556003--37556194 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
37555993 GGATATAACG
* ** * *
37556003 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
37556043 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
37556083 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
37556122 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
37556162 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
37556195 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:37558328 original size:46 final size:48
Alignment explanation
Indices: 37558211--37558340 Score: 162
Period size: 46 Copynumber: 2.8 Consensus size: 48
37558201 TGTAACCCGC
* *
37558211 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAG-T-CAT
* * *
37558261 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG-CAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGTCAT
37558304 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37558341 TGCCCAAATA
Statistics
Matches: 70, Mismatches: 7, Indels: 10
0.80 0.08 0.11
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 2 0.03
46 32 0.46
47 29 0.41
48 2 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGTCAT
Found at i:37558359 original size:46 final size:45
Alignment explanation
Indices: 37558216--37558359 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 45
37558206 CCCGCCCATA
* * *
37558216 AGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
37558264 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
37558309 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
37558355 AGTGA
1 AGTGA
37558360 CATGTCACTT
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.48
47 30 0.39
48 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:37566813 original size:23 final size:22
Alignment explanation
Indices: 37566781--37566824 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
37566771 ACATGGCCGT
*
37566781 GGGAATTTTTTTATCCTGTGTTA
1 GGGAAATTTTTTATCCT-TGTTA
*
37566804 GGGAAATTTTTTTTCCTTGTT
1 GGGAAATTTTTTATCCTTGTT
37566825 TTCACACGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.16, C:0.09, G:0.20, T:0.55
Consensus pattern (22 bp):
GGGAAATTTTTTATCCTTGTTA
Found at i:37570138 original size:47 final size:47
Alignment explanation
Indices: 37570069--37570191 Score: 219
Period size: 47 Copynumber: 2.6 Consensus size: 47
37570059 AACAGCTCGT
37570069 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
37570116 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
37570163 AGTGTATATATGTGGTAAAGCCGAATGGC
1 AGTGTATATATGTGATAAGGCCTAATGGC
37570192 TAATGTGAAA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:37570228 original size:48 final size:48
Alignment explanation
Indices: 37570169--37570436 Score: 419
Period size: 48 Copynumber: 5.6 Consensus size: 48
37570159 TGAAAGTGTA
37570169 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
37570217 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
37570265 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * * *
37570313 TATATGTGGTAAAGCCGAATGGATAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * * * *
37570361 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* *
37570409 AATATGTGGTAAAGCTGAATGGCTAATG
1 TATATGTGGTAAAGCCGAATGGCTAATG
37570437 AGAATGTTGT
Statistics
Matches: 204, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 204 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
Found at i:37570535 original size:37 final size:37
Alignment explanation
Indices: 37570485--37570570 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
37570475 GGAAATATAT
*
37570485 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
37570522 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
37570559 TCCGGGTAAGAC
1 TCCGGGTAAGAC
37570571 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:37576122 original size:28 final size:27
Alignment explanation
Indices: 37576056--37576132 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 27
37576046 CGACCATGTA
* *
37576056 CCCCTATTTTTCAGATTTTATAGTTTTT
1 CCCCT-TTTTTTAGATTTTATAGTTTTC
**
37576084 CCTATTATTTTTAGATTTTATAGTTTTGC
1 CCCCTT-TTTTTAGATTTTATAGTTTT-C
37576113 CCCCTTTTTTTAGAATTTTA
1 CCCCTTTTTTTAG-ATTTTA
37576133 CAATTTTGAC
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
27 1 0.03
28 29 0.73
29 10 0.25
ACGTcount: A:0.19, C:0.16, G:0.08, T:0.57
Consensus pattern (27 bp):
CCCCTTTTTTTAGATTTTATAGTTTTC
Found at i:37576150 original size:28 final size:29
Alignment explanation
Indices: 37576088--37576160 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 29
37576078 GTTTTTCCTA
* * *
37576088 TTATTTTTAG-ATTTTATAGTTTTGCCCCC
1 TTATTTTTAGAATTTTACAATTTTG-CACC
37576117 TT-TTTTTAGAATTTTACAATTTTG-ACC
1 TTATTTTTAGAATTTTACAATTTTGCACC
37576144 TTATTTTTCA-AATTTTA
1 TTATTTTT-AGAATTTTA
37576161 TAGCTTTACC
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
27 4 0.11
28 19 0.50
29 15 0.39
ACGTcount: A:0.23, C:0.12, G:0.07, T:0.58
Consensus pattern (29 bp):
TTATTTTTAGAATTTTACAATTTTGCACC
Found at i:37580761 original size:17 final size:17
Alignment explanation
Indices: 37580719--37580785 Score: 80
Period size: 17 Copynumber: 3.8 Consensus size: 17
37580709 GGATTCATAG
* *
37580719 ATGGTATGAGTTCGCAC
1 ATGGTATGGGTTCACAC
37580736 ATGCAGTATGGGTTCACAC
1 ATG--GTATGGGTTCACAC
37580755 ATGGTATGGGTTCACAC
1 ATGGTATGGGTTCACAC
*
37580772 ATAGGTAGGGGTTC
1 AT-GGTATGGGTTC
37580786 TCATATGTGG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
17 19 0.43
18 10 0.23
19 15 0.34
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.28
Consensus pattern (17 bp):
ATGGTATGGGTTCACAC
Found at i:37588411 original size:40 final size:40
Alignment explanation
Indices: 37588367--37588459 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
37588357 CCAAGCACAC
*
37588367 TTTGTGCCGGTGTATTTATC-GAGCATTATGCCTAGCAGGA
1 TTTGTGCCGGTGTATTTATCAG-GCATTACGCCTAGCAGGA
* * * * *
37588407 TTTGTGTCGGTGTGTTTATCAGGCTTTGCGCCTAGCAGGC
1 TTTGTGCCGGTGTATTTATCAGGCATTACGCCTAGCAGGA
*
37588447 TTTGTGCCAGTGT
1 TTTGTGCCGGTGT
37588460 TGTCAATCAG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 43 0.98
41 1 0.02
ACGTcount: A:0.14, C:0.18, G:0.30, T:0.38
Consensus pattern (40 bp):
TTTGTGCCGGTGTATTTATCAGGCATTACGCCTAGCAGGA
Found at i:37589629 original size:30 final size:30
Alignment explanation
Indices: 37589593--37589649 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
37589583 TTTGAATTAT
37589593 ACAGTAATACTTTGTAACCCTTTTTCGCTA
1 ACAGTAATACTTTGTAACCCTTTTTCGCTA
37589623 ACAGTAATACTTTGTAACCCTTTTTCG
1 ACAGTAATACTTTGTAACCCTTTTTCG
37589650 GTGATGCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.40
Consensus pattern (30 bp):
ACAGTAATACTTTGTAACCCTTTTTCGCTA
Found at i:37595539 original size:27 final size:28
Alignment explanation
Indices: 37595509--37595574 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
37595499 GGGCATAATC
37595509 GTCATTTTACCATATAG-GGGTATTACG
1 GTCATTTTACCATATAGAGGGTATTACG
*
37595536 GTCATTTTACCCTATAGAGGGTATTACG
1 GTCATTTTACCATATAGAGGGTATTACG
* *
37595564 ATTATTTTACC
1 GTCATTTTACC
37595575 TATTCTGGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
27 16 0.46
28 19 0.54
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (28 bp):
GTCATTTTACCATATAGAGGGTATTACG
Found at i:37603166 original size:25 final size:25
Alignment explanation
Indices: 37603110--37603166 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
37603100 GGAAGCTCAT
*
37603110 AAGAGCCTATATCAGAACGCTCACG
1 AAGAGCTTATATCAGAACGCTCACG
*
37603135 AAGAGCTTATATCAGGACGCTCACG
1 AAGAGCTTATATCAGAACGCTCACG
37603160 AAGAGCT
1 AAGAGCT
37603167 GCGTTTGTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.18
Consensus pattern (25 bp):
AAGAGCTTATATCAGAACGCTCACG
Found at i:37605427 original size:24 final size:24
Alignment explanation
Indices: 37605395--37605444 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
37605385 AAATAAGTCA
37605395 ACTCACTTTGTGATGACTCACAGG
1 ACTCACTTTGTGATGACTCACAGG
37605419 ACTCACTTTGTGATGACTCACAGG
1 ACTCACTTTGTGATGACTCACAGG
37605443 AC
1 AC
37605445 ATACTCTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (24 bp):
ACTCACTTTGTGATGACTCACAGG
Found at i:37607524 original size:40 final size:38
Alignment explanation
Indices: 37607422--37607530 Score: 103
Period size: 40 Copynumber: 2.7 Consensus size: 38
37607412 GCTAGAGTTT
37607422 AGCATTAGCGGCGTTTCTA-AACAAACGCCACTATGATAA
1 AGCATTAGCGGCGTTT-TATAA-AAACGCCACTATGATAA
* * * * **
37607461 AACATTAACGGCGTTTTTCTAAAAGCGCCACTATAGATCG
1 AGCATTAGCGGCG-TTTTATAAAAACGCCACTAT-GATAA
37607501 AGCATTAGCGGCGCTTTTATAAAAAACGCC
1 AGCATTAGCGGCG-TTTTAT-AAAAACGCC
37607531 GCAAATGCTT
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
39 23 0.42
40 24 0.44
41 8 0.15
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (38 bp):
AGCATTAGCGGCGTTTTATAAAAACGCCACTATGATAA
Found at i:37607883 original size:28 final size:29
Alignment explanation
Indices: 37607838--37607892 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
37607828 CAAAAAGTAT
*
37607838 TTTATGTATATATTTATT-ATTTAAATGG
1 TTTATGTATATATTTATTGATTAAAATGG
*
37607866 TTTATTTATAT-TTATATTGATTAAAAT
1 TTTATGTATATATT-TATTGATTAAAAT
37607893 ACAATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 14 0.61
29 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (29 bp):
TTTATGTATATATTTATTGATTAAAATGG
Found at i:37608294 original size:15 final size:15
Alignment explanation
Indices: 37608240--37608301 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 15
37608230 GTGGTTTAAA
37608240 GTTTAAGGATT-AGTG
1 GTTTAAGGATTAAG-G
* *
37608255 GGTAAAGG-TTAAGG
1 GTTTAAGGATTAAGG
* *
37608269 GTTTTATGGATTATGG
1 G-TTTAAGGATTAAGG
37608285 GTTTAAGGATTAAGG
1 GTTTAAGGATTAAGG
37608300 GT
1 GT
37608302 CATGGGTTAT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
14 4 0.11
15 26 0.72
16 6 0.17
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.37
Consensus pattern (15 bp):
GTTTAAGGATTAAGG
Found at i:37608395 original size:7 final size:7
Alignment explanation
Indices: 37608385--37608520 Score: 67
Period size: 7 Copynumber: 18.7 Consensus size: 7
37608375 ATGGGAGAGG
37608385 GGTTTAT
1 GGTTTAT
37608392 GGTTTAT
1 GGTTTAT
*
37608399 GAGTTAAT
1 G-GTTTAT
* *
37608407 GTTTTAA
1 GGTTTAT
*
37608414 GGTTTAAA
1 GGTTT-AT
*
37608422 GATTT-T
1 GGTTTAT
37608428 GGTTTAT
1 GGTTTAT
*
37608435 GGTTTAA
1 GGTTTAT
* *
37608442 GGGTTAG
1 GGTTTAT
*
37608449 GGTTTAA
1 GGTTTAT
*
37608456 GGTTTAG
1 GGTTTAT
*
37608463 GGGTTAGT
1 GGTTTA-T
* * *
37608471 AGATTAG
1 GGTTTAT
*
37608478 GGTTTAG
1 GGTTTAT
37608485 GGTTTTAT
1 GG-TTTAT
37608493 GGTTTCAT
1 GGTTT-AT
37608501 GGTTTAT
1 GGTTTAT
*
37608508 GTATTTAT
1 G-GTTTAT
37608516 GGTTT
1 GGTTT
37608521 GGGGTTTAAA
Statistics
Matches: 98, Mismatches: 24, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
6 4 0.04
7 59 0.60
8 35 0.36
ACGTcount: A:0.21, C:0.01, G:0.30, T:0.49
Consensus pattern (7 bp):
GGTTTAT
Found at i:37608829 original size:26 final size:27
Alignment explanation
Indices: 37608756--37608830 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 27
37608746 AATAATTTAA
*
37608756 AATTTTAAAGATTTCAAA-TTTAGAAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
37608782 AAATTTCAAGATTTCAAATTTTA-AAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
37608808 AATTTTCAATATTTCAAATTTTA
1 AATTTTCAAGATTTCAAATTTTA
37608831 TCTAATTCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 40 0.91
27 4 0.09
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.45
Consensus pattern (27 bp):
AATTTTCAAGATTTCAAATTTTAGAAT
Found at i:37608976 original size:18 final size:17
Alignment explanation
Indices: 37608945--37608979 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
37608935 TAGTTGATTG
*
37608945 TTTTTTAATTTATATTA
1 TTTTTAAATTTATATTA
37608962 TTTTTAAATTATATATTA
1 TTTTTAAATT-TATATTA
37608980 AATAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTTAAATTTATATTA
Found at i:37609525 original size:14 final size:13
Alignment explanation
Indices: 37609488--37609521 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
37609478 CCTTAAGTGT
37609488 TTTTCCCCTAAAA
1 TTTTCCCCTAAAA
*
37609501 CTTTCCCCTAAAA
1 TTTTCCCCTAAAA
37609514 TTTTCCCC
1 TTTTCCCC
37609522 CTAACCCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.38, G:0.00, T:0.38
Consensus pattern (13 bp):
TTTTCCCCTAAAA
Found at i:37611363 original size:31 final size:31
Alignment explanation
Indices: 37611320--37611383 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
37611310 CCTTTTCATA
37611320 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
37611351 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
37611382 TT
1 TT
37611384 ATTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:37611627 original size:24 final size:24
Alignment explanation
Indices: 37611591--37611788 Score: 314
Period size: 23 Copynumber: 8.4 Consensus size: 24
37611581 CTGGAGGCCT
*
37611591 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
37611616 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
37611640 ATCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
37611663 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
37611687 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
37611710 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
37611734 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
37611757 AGCCC-TTTAATAACTTGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
37611780 AGCCCTTTT
1 AGCCCTTTT
37611789 GCACTTCCTC
Statistics
Matches: 162, Mismatches: 8, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
23 88 0.54
24 70 0.43
25 4 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:37611667 original size:47 final size:47
Alignment explanation
Indices: 37611598--37611787 Score: 328
Period size: 47 Copynumber: 4.1 Consensus size: 47
37611588 CCTAGCCTCT
* *
37611598 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAATCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
37611645 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
37611692 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
37611739 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTTGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
37611785 TTT
1 TTT
37611788 TGCACTTCCT
Statistics
Matches: 138, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
46 24 0.17
47 114 0.83
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:37611860 original size:9 final size:9
Alignment explanation
Indices: 37611846--37611902 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
37611836 ATCTCATGTG
37611846 CATATCATA
1 CATATCATA
*
37611855 CATATCATGTG
1 CATATCA--TA
37611866 CATATCATA
1 CATATCATA
* *
37611875 CATGTCATGTG
1 CATATCA--TA
37611886 CATATCATA
1 CATATCATA
37611895 CATATCAT
1 CATATCAT
37611903 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:37611862 original size:20 final size:20
Alignment explanation
Indices: 37611834--37611904 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
37611824 GCATTTATGA
*
37611834 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
37611854 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
37611874 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
37611894 ACATATCATGT
1 ACATATCATGT
37611905 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:37611869 original size:11 final size:11
Alignment explanation
Indices: 37611839--37611893 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
37611829 TATGAACATC
37611839 TCATGTGCATA
1 TCATGTGCATA
*
37611850 TCA--TACATA
1 TCATGTGCATA
37611859 TCATGTGCATA
1 TCATGTGCATA
* *
37611870 TCA--TACATG
1 TCATGTGCATA
37611879 TCATGTGCATA
1 TCATGTGCATA
37611890 TCAT
1 TCAT
37611894 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:37619547 original size:31 final size:31
Alignment explanation
Indices: 37619504--37619567 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
37619494 CCTTTTCATA
37619504 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
37619535 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
37619566 TT
1 TT
37619568 ATTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Done.