Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 140 of 427
Found at i:37914878 original size:55 final size:55
Alignment explanation
Indices: 37914811--37914921 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
37914801 ATATATATAA
*
37914811 ATTGTTAATATATTTTATACTATATGATATGATATAACATTATAGTAGAAGGGTT
1 ATTGTTAATATATTATATACTATATGATATGATATAACATTATAGTAGAAGGGTT
37914866 ATTGTTAATATATTATATACTATATGATATGATATAACATTATAGTAGAAGGGTT
1 ATTGTTAATATATTATATACTATATGATATGATATAACATTATAGTAGAAGGGTT
37914921 A
1 A
37914922 ACTTCCAAAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.40, C:0.04, G:0.14, T:0.42
Consensus pattern (55 bp):
ATTGTTAATATATTATATACTATATGATATGATATAACATTATAGTAGAAGGGTT
Found at i:37919532 original size:1 final size:1
Alignment explanation
Indices: 37919526--37919550 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
37919516 TTCATTTAGG
37919526 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
37919551 GCATACATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:37924530 original size:2 final size:2
Alignment explanation
Indices: 37924523--37924551 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
37924513 CCCATCAAAA
37924523 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37924552 TGAGATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37924652 original size:17 final size:17
Alignment explanation
Indices: 37924630--37924665 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
37924620 AGTTGAATAA
37924630 TTCAATAAAGTAAGATT
1 TTCAATAAAGTAAGATT
37924647 TTCAATAAAGTAAGATT
1 TTCAATAAAGTAAGATT
37924664 TT
1 TT
37924666 AAAAGACATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (17 bp):
TTCAATAAAGTAAGATT
Found at i:37927939 original size:27 final size:27
Alignment explanation
Indices: 37927908--37927971 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
37927898 ACAGGTTCTC
37927908 TTTTTCTTTT-ATTTTCATATTTCTTT
1 TTTTTCTTTTAATTTTCATATTTCTTT
*
37927934 TGTTTT-TTTTAATTTTCTTATTTCTTT
1 T-TTTTCTTTTAATTTTCATATTTCTTT
37927961 TTTTTACTTTT
1 TTTTT-CTTTT
37927972 TTATTTTGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
26 9 0.27
27 20 0.61
28 4 0.12
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.78
Consensus pattern (27 bp):
TTTTTCTTTTAATTTTCATATTTCTTT
Found at i:37927961 original size:21 final size:21
Alignment explanation
Indices: 37927910--37927977 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 21
37927900 AGGTTCTCTT
* *
37927910 TTTCTTTTATTTTCATATTTCT-
1 TTTCTTTT-TTTTAAT-TTTTTA
*
37927932 TTTGTTTTTTTTAATTTTCTTA
1 TTTCTTTTTTTTAATTTT-TTA
*
37927954 TTTCTTTTTTTTACTTTTTTA
1 TTTCTTTTTTTTAATTTTTTA
37927975 TTT
1 TTT
37927978 TGTTCCTTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
20 3 0.08
21 13 0.33
22 23 0.59
ACGTcount: A:0.12, C:0.09, G:0.01, T:0.78
Consensus pattern (21 bp):
TTTCTTTTTTTTAATTTTTTA
Found at i:37928120 original size:23 final size:22
Alignment explanation
Indices: 37928094--37928148 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 22
37928084 ATGTATATTT
37928094 AAAATGTTTTATAA-TATTTTTTA
1 AAAAT-TTTTATAATTA-TTTTTA
* *
37928117 AAAATTTTAATTATTATTTTTA
1 AAAATTTTTATAATTATTTTTA
37928139 AAAATATTTT
1 AAAAT-TTTT
37928149 TTTTTAACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 17 0.63
23 10 0.37
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
AAAATTTTTATAATTATTTTTA
Found at i:37928275 original size:36 final size:37
Alignment explanation
Indices: 37928235--37928309 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
37928225 TTTTAAAATT
37928235 AATAATAT-AAA-TTAAATAAACAAAATAAAA-TAAGAA
1 AATAATATAAAACTTAAA-AAACAAAA-AAAATTAAGAA
*
37928271 AATAATATAAAACTTAAAAAAGAAAAAAAATTAAGAA
1 AATAATATAAAACTTAAAAAACAAAAAAAATTAAGAA
37928308 AA
1 AA
37928310 AGACAAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
36 12 0.34
37 18 0.51
38 5 0.14
ACGTcount: A:0.73, C:0.03, G:0.04, T:0.20
Consensus pattern (37 bp):
AATAATATAAAACTTAAAAAACAAAAAAAATTAAGAA
Found at i:37928280 original size:18 final size:18
Alignment explanation
Indices: 37928230--37928282 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
37928220 AAATTTTTTA
* *
37928230 AAATTAATAATATAAATT
1 AAATAAATAATATAAAAT
* *
37928248 AAATAAACAAAATAAAAT
1 AAATAAATAATATAAAAT
37928266 AAGA-AAATAATATAAAA
1 AA-ATAAATAATATAAAA
37928283 CTTAAAAAAG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (18 bp):
AAATAAATAATATAAAAT
Found at i:37928496 original size:14 final size:14
Alignment explanation
Indices: 37928477--37928503 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37928467 AAAAATATGG
37928477 TTAATATTTAAAAA
1 TTAATATTTAAAAA
37928491 TTAATATTTAAAA
1 TTAATATTTAAAA
37928504 TTTTCAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAATATTTAAAAA
Found at i:37928659 original size:18 final size:18
Alignment explanation
Indices: 37928636--37928688 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
37928626 ACAATTTTTT
*
37928636 TTAAATTAATAATATAAA
1 TTAAATAAATAATATAAA
* *
37928654 TTAAATAAACAAAATAAA
1 TTAAATAAATAATATAAA
*
37928672 ATAAA-AAATAATATAAA
1 TTAAATAAATAATATAAA
37928689 ACTTAAAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
17 10 0.34
18 19 0.66
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (18 bp):
TTAAATAAATAATATAAA
Found at i:37928852 original size:20 final size:19
Alignment explanation
Indices: 37928821--37928867 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
37928811 CCAATTTTTT
37928821 AAAAATTTAAAA-AAAGTTA
1 AAAAATTTAAAAGAAA-TTA
37928840 AAAAATTTAAAAAGAAATTA
1 AAAAATTT-AAAAGAAATTA
37928860 AAGAAATT
1 AA-AAATT
37928868 GTATTTACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.32
20 9 0.36
21 8 0.32
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (19 bp):
AAAAATTTAAAAGAAATTA
Found at i:37928938 original size:14 final size:14
Alignment explanation
Indices: 37928919--37928945 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37928909 AAAAATATGG
37928919 TTAATATTTAAAAA
1 TTAATATTTAAAAA
37928933 TTAATATTTAAAA
1 TTAATATTTAAAA
37928946 TTTTCAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAATATTTAAAAA
Found at i:37929027 original size:36 final size:37
Alignment explanation
Indices: 37928951--37929027 Score: 86
Period size: 36 Copynumber: 2.1 Consensus size: 37
37928941 TAAAATTTTC
* * *
37928951 AAAAATTAATTTGAACAAATACATTTTTAAATATATA
1 AAAAATTAATTTGAACAAATACATATCTAAATATAAA
* *
37928988 AAAAATTAATTT-CACAAATATATATCTAAAGT-TAAA
1 AAAAATTAATTTGAACAAATACATATCTAAA-TATAAA
37929024 AAAA
1 AAAA
37929028 TATTTTTAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
36 21 0.62
37 13 0.38
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (37 bp):
AAAAATTAATTTGAACAAATACATATCTAAATATAAA
Found at i:37929076 original size:22 final size:22
Alignment explanation
Indices: 37929024--37929080 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
37929014 TAAAGTTAAA
*
37929024 AAAATATTTTTAAAAATAATAAT
1 AAAA-ATTTTAAAAAATAATAAT
* *
37929047 TAAAATTTTAAAAAAT-ATTAT
1 AAAAATTTTAAAAAATAATAAT
37929068 AAAACATTTTAAA
1 AAAA-ATTTTAAA
37929081 TATACATTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 7 0.24
22 19 0.66
23 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAAATTTTAAAAAATAATAAT
Found at i:37929208 original size:17 final size:18
Alignment explanation
Indices: 37929186--37929247 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
37929176 ATTAAGGAAC
37929186 AAAATAA-AAAAGTAAAA-
1 AAAATAAGAAAA-TAAAAG
37929203 AAAATAAGAAAATAAAAG
1 AAAATAAGAAAATAAAAG
* * *
37929221 AAAAAAACAAAAGAAATATG
1 AAAATAAGAAAATAAA-A-G
37929241 AAAATAA
1 AAAATAA
37929248 AAGAACTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
17 12 0.32
18 17 0.46
19 1 0.03
20 7 0.19
ACGTcount: A:0.79, C:0.02, G:0.08, T:0.11
Consensus pattern (18 bp):
AAAATAAGAAAATAAAAG
Found at i:37929225 original size:23 final size:23
Alignment explanation
Indices: 37929193--37929236 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
37929183 AACAAAATAA
*
37929193 AAAAGTAAAAAAA-ATAAGAAAAT
1 AAAAG-AAAAAAACAAAAGAAAAT
37929216 AAAAGAAAAAAACAAAAGAAA
1 AAAAGAAAAAAACAAAAGAAA
37929237 TATGAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.82, C:0.02, G:0.09, T:0.07
Consensus pattern (23 bp):
AAAAGAAAAAAACAAAAGAAAAT
Found at i:37929249 original size:17 final size:16
Alignment explanation
Indices: 37929187--37929252 Score: 57
Period size: 17 Copynumber: 4.1 Consensus size: 16
37929177 TTAAGGAACA
* *
37929187 AAATAAAAAAGTAAAAA
1 AAATAGAAAA-TAAAAG
37929204 AAATAAGAAAATAAAAG
1 AAAT-AGAAAATAAAAG
*
37929221 -AA-A-AAAACAAAAG
1 AAATAGAAAATAAAAG
37929234 AAATATGAAAATAAAAG
1 AAATA-GAAAATAAAAG
37929251 AA
1 AA
37929253 CTTTATTTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
13 9 0.22
14 3 0.08
15 1 0.03
16 2 0.05
17 20 0.50
18 5 0.12
ACGTcount: A:0.79, C:0.02, G:0.09, T:0.11
Consensus pattern (16 bp):
AAATAGAAAATAAAAG
Found at i:37929556 original size:44 final size:46
Alignment explanation
Indices: 37929497--37929584 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 46
37929487 AGCCAATAAA
37929497 ATTACAATATAAATTTATCTTTTTCA-TTTTTTATCAAATAAAATT
1 ATTACAATATAAATTTATCTTTTTCATTTTTTTATCAAATAAAATT
37929542 ATTAC-ATATAAATTTATCTTTTTCATTTTTTTATCAAATAAAA
1 ATTACAATATAAATTTATCTTTTTCATTTTTTTATCAAATAAAA
37929585 ATTCATTAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
44 20 0.48
45 22 0.52
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (46 bp):
ATTACAATATAAATTTATCTTTTTCATTTTTTTATCAAATAAAATT
Found at i:37931238 original size:13 final size:14
Alignment explanation
Indices: 37931220--37931251 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
37931210 GTATGATATG
37931220 AAAACAAA-AAAAA
1 AAAACAAACAAAAA
37931233 AAAACAAACAAAAA
1 AAAACAAACAAAAA
37931247 AAAAC
1 AAAAC
37931252 CTTTGCTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAACAAACAAAAA
Found at i:37931331 original size:2 final size:2
Alignment explanation
Indices: 37931320--37931356 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
37931310 AAAAATTACT
37931320 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37931357 CATAAACGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:37932866 original size:22 final size:24
Alignment explanation
Indices: 37932839--37932884 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
37932829 GATGTGAATG
37932839 AAAAAATTG-TATAAAAAT-ATAA
1 AAAAAATTGATATAAAAATCATAA
*
37932861 AAAAAATTGATATCAAAATCATAA
1 AAAAAATTGATATAAAAATCATAA
37932885 TAGATGTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.43
23 8 0.38
24 4 0.19
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.26
Consensus pattern (24 bp):
AAAAAATTGATATAAAAATCATAA
Found at i:37941277 original size:13 final size:13
Alignment explanation
Indices: 37941259--37941285 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37941249 AAATTATACT
37941259 AGTAATTTTATTA
1 AGTAATTTTATTA
37941272 AGTAATTTTATTA
1 AGTAATTTTATTA
37941285 A
1 A
37941286 AATAATACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (13 bp):
AGTAATTTTATTA
Found at i:37942116 original size:6 final size:6
Alignment explanation
Indices: 37942098--37942138 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
37942088 TAATATTGGA
* * *
37942098 GGAGAT GGGGAT GGAGAT GGAGAT GGGGAT GAAGAT GGAGA
1 GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT GGAGA
37942139 GGAAAGCTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.32, C:0.00, G:0.54, T:0.15
Consensus pattern (6 bp):
GGAGAT
Found at i:37942121 original size:18 final size:18
Alignment explanation
Indices: 37942098--37942138 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
37942088 TAATATTGGA
*
37942098 GGAGATGGGGATGGAGAT
1 GGAGATGGGGATGAAGAT
37942116 GGAGATGGGGATGAAGAT
1 GGAGATGGGGATGAAGAT
37942134 GGAGA
1 GGAGA
37942139 GGAAAGCTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.54, T:0.15
Consensus pattern (18 bp):
GGAGATGGGGATGAAGAT
Found at i:37943117 original size:18 final size:19
Alignment explanation
Indices: 37943089--37943133 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
37943079 TATCAAATAA
*
37943089 ATTTATTAAATATAAATTC
1 ATTTATTAAATAAAAATTC
37943108 ATTT-TTAAATAAAAATT-
1 ATTTATTAAATAAAAATTC
37943125 ATTATATTA
1 ATT-TATTA
37943134 TAACACTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 3 0.13
18 13 0.57
19 7 0.30
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTATTAAATAAAAATTC
Found at i:37948297 original size:27 final size:27
Alignment explanation
Indices: 37948232--37948410 Score: 245
Period size: 27 Copynumber: 6.7 Consensus size: 27
37948222 TTTGGTTTAC
37948232 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * * *
37948258 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
37948285 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
37948312 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
37948339 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
37948366 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
37948393 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
37948411 TCGACCTGTA
Statistics
Matches: 138, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
26 14 0.10
27 123 0.89
28 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:37948342 original size:54 final size:55
Alignment explanation
Indices: 37948232--37948464 Score: 237
Period size: 54 Copynumber: 4.3 Consensus size: 55
37948222 TTTGGTTTAC
* * * *
37948232 AAAATTACCAAAATA-CCCT-GCTTTGTAAAATTA-CTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGATTTGTAAAATTATC-AAAATACCCCTAGTTTGT
37948285 AAAATTACCAAAATACCCCTAG-TTTGTAAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGATTTGTAAAATTATCAAAATACCCCTAGTTTGT
* * *
37948339 AAAATTATCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGATTTGTAAAATTATCAAAATACCCCTAGTTTGT
* ** * ** ** * *
37948393 GAAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGAAATA-CCCTCGACTTGT
1 AAAATTACCAAAATACCCCTAGATTTGTAAAATTATCAAAATACCCCTAG-TTTGT
*
37948447 AAAATTACCAAAGTACCC
1 AAAATTACCAAAATACCC
37948465 TCGATTTATA
Statistics
Matches: 151, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
53 24 0.16
54 123 0.81
55 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (55 bp):
AAAATTACCAAAATACCCCTAGATTTGTAAAATTATCAAAATACCCCTAGTTTGT
Found at i:37948352 original size:81 final size:80
Alignment explanation
Indices: 37948232--37948464 Score: 249
Period size: 81 Copynumber: 2.9 Consensus size: 80
37948222 TTTGGTTTAC
* *
37948232 AAAATTACCAAAATACCCTGCTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
1 AAAATTACCAAAATACCCTGCTTTGTAAAATTACTAAAATACCCCTAGTTTATAAAATTACCAAA
*
37948297 ATACCCCTAGTTTGT
66 ATACCCCTAATTTGT
* *
37948312 AAAATTATCAAAATACCCCTAG-TTTGTAAAATTA-TCAAAATACCCCTAGTTTGTAAAATTACC
1 AAAATTACCAAAATA-CCCT-GCTTTGTAAAATTACT-AAAATACCCCTAGTTTATAAAATTACC
37948375 AAAATACCCCTAATTTGT
63 AAAATACCCCTAATTTGT
* ** * * * * * *
37948393 GAAATTACTGAAATACCCTCGAC-CTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACC
1 AAAATTACCAAAATACCCT-G-CTTTGTAAAATTACTAAAATACCCCTAG-TTTATAAAATTACC
*
37948456 AAAGTACCC
63 AAAATACCC
37948465 TCGATTTATA
Statistics
Matches: 131, Mismatches: 15, Indels: 13
0.82 0.09 0.08
Matches are distributed among these distances:
80 25 0.19
81 104 0.79
82 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGCTTTGTAAAATTACTAAAATACCCCTAGTTTATAAAATTACCAAA
ATACCCCTAATTTGT
Found at i:37948424 original size:27 final size:27
Alignment explanation
Indices: 37948394--37948468 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
37948384 CTAATTTGTG
37948394 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
37948421 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
37948448 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
37948469 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:37948480 original size:54 final size:54
Alignment explanation
Indices: 37948232--37948536 Score: 145
Period size: 54 Copynumber: 5.7 Consensus size: 54
37948222 TTTGGTTTAC
* * * * ** * ** *
37948232 AAAATTACCAAAATACCCT-GCTTTGTAAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
* * * * * * * *
37948285 AAAATTACCAAAATACCC-CTAGTTTGTAAAATTATCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTCGA-CTTGT
* * * * * * * *
37948339 AAAATTATCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTC-GACTTGT
* * ** * * **
37948393 GAAATTACTGAAA-TACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGT
1 AAAATTAC-CAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
*** *
37948447 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGT
1 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
****
37948501 AAAATTACCGTTTTACCCTCGATTTATAGAATTACC
1 AAAATTACCAAAGTACCCTCGATTTATAGAATTACC
37948537 ATTTTACCCT
Statistics
Matches: 206, Mismatches: 38, Indels: 15
0.80 0.15 0.06
Matches are distributed among these distances:
53 21 0.10
54 178 0.86
55 7 0.03
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
Found at i:37948806 original size:27 final size:27
Alignment explanation
Indices: 37948460--37948805 Score: 410
Period size: 27 Copynumber: 12.8 Consensus size: 27
37948450 ATTACCAAAG
*
37948460 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
37948487 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
37948514 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
37948541 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
37948568 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
37948595 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
37948622 TACCC-CAGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
37948649 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
37948676 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
37948703 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
37948730 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
37948757 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
37948784 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
37948806 TAAAATACCC
Statistics
Matches: 283, Mismatches: 32, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
26 2 0.01
27 279 0.99
28 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:37948829 original size:27 final size:27
Alignment explanation
Indices: 37948798--37948869 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
37948788 CTCGATTTAC
* **
37948798 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
* **
37948825 GAAATTACCGCAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
*
37948852 AAAACTACCAAAATACCC
1 AAAATTACCAAAATACCC
37948870 CTGTATGGTA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAATTTGT
Found at i:37948842 original size:54 final size:54
Alignment explanation
Indices: 37948649--37948843 Score: 120
Period size: 54 Copynumber: 3.6 Consensus size: 54
37948639 ATTATCGTTT
* * * *** * * ***
37948649 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACTAAAA
* * * * *** * ***
37948703 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTATTT
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACTAAAA
* ***
37948757 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACTAAAA
* ***
37948811 TACCCTTGGTTTGTGAAATTACCGCAATACCCT
1 TACCCTTGATTTACAAAATTACCGCAATACCCT
37948844 TAATTTGTAA
Statistics
Matches: 122, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 122 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (54 bp):
TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACTAAAA
Found at i:37950073 original size:25 final size:25
Alignment explanation
Indices: 37950044--37950091 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37950034 TTATAATATG
* * *
37950044 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
37950069 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
37950092 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:37950160 original size:20 final size:20
Alignment explanation
Indices: 37950135--37950193 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
37950125 TAAATATGGT
37950135 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
37950155 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
37950175 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
37950194 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:37950271 original size:24 final size:24
Alignment explanation
Indices: 37950244--37950386 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
37950234 GAGGAAGTGA
37950244 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
37950268 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
37950292 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
37950315 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
37950339 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
37950363 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
37950387 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:37950337 original size:47 final size:47
Alignment explanation
Indices: 37950244--37950386 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
37950234 GAGGAAGTGA
37950244 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
37950292 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
37950339 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
37950387 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:37950360 original size:71 final size:72
Alignment explanation
Indices: 37950244--37950387 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
37950234 GAGGAAGTGA
*
37950244 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
37950307 CCAGTTAT
65 CCAGTTAT
** * *
37950315 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
37950380 CAGTTAT
66 CAGTTAT
37950387 A
1 A
37950388 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:37950627 original size:31 final size:31
Alignment explanation
Indices: 37950578--37950671 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
37950568 CGTTTACAGT
37950578 AAAGGCTTCGG-CCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37950608 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
37950639 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37950670 AA
1 AA
37950672 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 11 0.18
31 51 0.82
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:37953533 original size:27 final size:27
Alignment explanation
Indices: 37953468--37953646 Score: 254
Period size: 27 Copynumber: 6.7 Consensus size: 27
37953458 TTTGGTTTAC
37953468 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * * *
37953494 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
37953521 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
37953548 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
37953575 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
37953602 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
37953629 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
37953647 TCGACCTGTA
Statistics
Matches: 138, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
26 14 0.10
27 123 0.89
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:37953589 original size:81 final size:80
Alignment explanation
Indices: 37953468--37953700 Score: 272
Period size: 81 Copynumber: 2.9 Consensus size: 80
37953458 TTTGGTTTAC
* *
37953468 AAAATTACCAAAATACCCTGCTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACCAA
1 AAAATTACCAAAATACCCTGATTTGTAAAATTATC-AAAATACCCTTGGTTTGTAAAATTACCAA
*
37953532 AATACCCCTAGTTTGT
65 AATACCCCTAATTTGT
* *
37953548 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAAATTACCAAAATA-CCCTGA-TTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCA
37953612 AAATACCCCTAATTTGT
64 AAATACCCCTAATTTGT
* ** ** ** * **
37953629 GAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCT-GATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAA
*
37953694 AGTACCC
65 AATACCC
37953701 TCGATTTATA
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 19 0.15
81 109 0.84
82 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAAA
ATACCCCTAATTTGT
Found at i:37953660 original size:27 final size:27
Alignment explanation
Indices: 37953630--37953704 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
37953620 CTAATTTGTG
37953630 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
37953657 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
37953684 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
37953705 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:37953716 original size:54 final size:54
Alignment explanation
Indices: 37953468--37953827 Score: 160
Period size: 54 Copynumber: 6.7 Consensus size: 54
37953458 TTTGGTTTAC
* * * * ** * ** *
37953468 AAAATTACCAAAATACCCT-GCTTTGTAAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
* * * * * * *
37953521 AAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTCGA-CTTGT
* * * * * * * *
37953575 AAAATTATCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTC-GACTTGT
* * ** * * **
37953629 GAAATTACTGAAA-TACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGT
1 AAAATTAC-CAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
*** *
37953683 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGT
1 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
**** *** *
37953737 AAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGTT-T
1 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
* ***
37953789 ACAGAATTACTATTTTACCCTCGATTTATAGAATTACCG
1 A-A-AATTACCAAAGTACCCTCGATTTATAGAATTACCG
37953828 TTTTACCCCT
Statistics
Matches: 258, Mismatches: 39, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.01
53 25 0.10
54 224 0.87
55 7 0.03
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
Found at i:37954042 original size:27 final size:27
Alignment explanation
Indices: 37953696--37954041 Score: 419
Period size: 27 Copynumber: 12.8 Consensus size: 27
37953686 ATTACCAAAG
*
37953696 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
37953723 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
37953750 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
37953777 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
37953804 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
37953831 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
37953858 TACCC-CAGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
37953885 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
37953912 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
37953939 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
37953966 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
37953993 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
37954020 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
37954042 TAAAATACCC
Statistics
Matches: 283, Mismatches: 32, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
26 2 0.01
27 279 0.99
28 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:37954065 original size:27 final size:27
Alignment explanation
Indices: 37954034--37954105 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
37954024 CTCGATTTAC
* **
37954034 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
* **
37954061 GAAATTACCGCAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
*
37954088 AAAACTACCAAAATACCC
1 AAAATTACCAAAATACCC
37954106 CTGTATGGTA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAATTTGT
Found at i:37954078 original size:54 final size:54
Alignment explanation
Indices: 37953885--37954079 Score: 120
Period size: 54 Copynumber: 3.6 Consensus size: 54
37953875 ATTATCGTTT
* * * *** * * ***
37953885 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACTAAAA
* * * * *** * ***
37953939 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTATTT
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACTAAAA
* ***
37953993 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACTAAAA
* ***
37954047 TACCCTTGGTTTGTGAAATTACCGCAATACCCT
1 TACCCTTGATTTACAAAATTACCGCAATACCCT
37954080 TAATTTGTAA
Statistics
Matches: 122, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 122 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (54 bp):
TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACTAAAA
Found at i:37955309 original size:25 final size:25
Alignment explanation
Indices: 37955280--37955327 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37955270 TTATAATATG
* * *
37955280 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
37955305 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
37955328 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:37955396 original size:20 final size:20
Alignment explanation
Indices: 37955371--37955429 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
37955361 TAAATATGGT
37955371 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
37955391 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
37955411 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
37955430 GCTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:37955507 original size:24 final size:24
Alignment explanation
Indices: 37955480--37955622 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
37955470 GAGGAAGTGA
37955480 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
37955504 AAAAAGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
37955528 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
37955551 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
37955575 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
37955599 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
37955623 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 23 0.21
24 75 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:37955580 original size:47 final size:47
Alignment explanation
Indices: 37955480--37955622 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
37955470 GAGGAAGTGA
*
37955480 AAAAGGGCTTATGCCCCAGTTATCAAAAAGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
37955528 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
37955575 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
37955623 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 42 0.48
48 34 0.39
49 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:37955596 original size:71 final size:72
Alignment explanation
Indices: 37955480--37955623 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
37955470 GAGGAAGTGA
*
37955480 AAAAGGGCTTATGCCCCAGTTATCAAAAAGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAAGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
37955543 CCAGTTAT
65 CCAGTTAT
** * * *
37955551 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAAGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
37955616 CAGTTAT
66 CAGTTAT
37955623 A
1 A
37955624 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 53 0.82
72 12 0.18
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAAGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:37955863 original size:31 final size:31
Alignment explanation
Indices: 37955814--37955907 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
37955804 CGTTTACAAT
37955814 AAAGGCTTCGG-CCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37955844 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
37955875 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37955906 AA
1 AA
37955908 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 11 0.18
31 51 0.82
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:37967776 original size:122 final size:122
Alignment explanation
Indices: 37967630--37967883 Score: 485
Period size: 122 Copynumber: 2.1 Consensus size: 122
37967620 AGAATTTTGA
37967630 AAGAACA--AAGAAATTGAAATGAAAGTAACAGAATTCTCACGCCAAATTGAAAGGAAAAGGAAA
1 AAGAACATTAAGAAATTGAAATGAAAGTAACAGAATTCTCACGCCAAATTGAAAGGAAAAGGAAA
*
37967693 ATAATTCTATTCAATTCCAAATTGAAGTCAGAATGTAAGATTAGATGTGTCTTTCCT
66 ATAATTCTATTCAATTCCAAATTGAAGTCAGAATATAAGATTAGATGTGTCTTTCCT
37967750 AAGAACATTAAGAAATTGAAATGAAAGTAACAGAATTCTCACGCCAAATTGAAAGGAAAAGGAAA
1 AAGAACATTAAGAAATTGAAATGAAAGTAACAGAATTCTCACGCCAAATTGAAAGGAAAAGGAAA
37967815 ATAATTCTATTCAATTCCAAATTGAAGTCAGAATATAAGATTAGATGTGTCTTTCCT
66 ATAATTCTATTCAATTCCAAATTGAAGTCAGAATATAAGATTAGATGTGTCTTTCCT
37967872 AAGAACATTAAG
1 AAGAACATTAAG
37967884 GCTTTATTTA
Statistics
Matches: 131, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
120 7 0.05
122 124 0.95
ACGTcount: A:0.46, C:0.12, G:0.16, T:0.26
Consensus pattern (122 bp):
AAGAACATTAAGAAATTGAAATGAAAGTAACAGAATTCTCACGCCAAATTGAAAGGAAAAGGAAA
ATAATTCTATTCAATTCCAAATTGAAGTCAGAATATAAGATTAGATGTGTCTTTCCT
Found at i:37972088 original size:18 final size:18
Alignment explanation
Indices: 37972052--37972090 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
37972042 GTGACCCCTA
37972052 TTTTCAAAATTTTCATGT
1 TTTTCAAAATTTTCATGT
37972070 TTTTCCAAAATTTTC-TGT
1 TTTT-CAAAATTTTCATGT
37972088 TTT
1 TTT
37972091 GTTTCAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.23, C:0.13, G:0.05, T:0.59
Consensus pattern (18 bp):
TTTTCAAAATTTTCATGT
Found at i:37979543 original size:48 final size:48
Alignment explanation
Indices: 37979470--37979841 Score: 388
Period size: 48 Copynumber: 7.7 Consensus size: 48
37979460 TGTAGGCCAA
* * *
37979470 TGTAAGACCATGTTTGGAATATGGCATCGGCATTAATATGAGAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCTAG
* * * * * * * *
37979518 TGTAAGACCATATCTGGGACCTGGCATCGGCCTCGATATGTGAGCCAA
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCTAG
* * * *
37979566 TATAAGACCATGTTTGGAACATGGCATCCGCATTAATATGAGAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCTAG
* * * *
37979614 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCTAG
* * * *
37979662 TGTAAGACTATGTTTGGAACATGGCATCGGCGTTAATATGAGAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCTAG
* * * *
37979710 TGTAAGACTATGTTTAGGACATGGCATCGGCCTCCACATCTG-G-GCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCAT-CA-ATATGAGAGCTAG
* * * *
37979758 TGTAAGACCATGTTTGGAACATGGCATTGGCACTGATATATGAGAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCA-TCA-ATATGAGAGCTAG
* **
37979808 TGTAAGACCATGTCTAAGACATGGCATCGGCATC
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATC
37979842 TTACCCTTTG
Statistics
Matches: 261, Mismatches: 58, Indels: 9
0.80 0.18 0.03
Matches are distributed among these distances:
48 221 0.85
49 5 0.02
50 35 0.13
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCTAG
Found at i:37979622 original size:96 final size:96
Alignment explanation
Indices: 37979465--37979838 Score: 523
Period size: 96 Copynumber: 3.9 Consensus size: 96
37979455 GGTTATGTAG
* *
37979465 GCCAATGTAAGACCATGTTTGGAATATGGCATCGGCATTAATATGAGAGCTAGTGTAAGACCATA
1 GCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATTAATATGAGAGCTAGTGTAAGACCATG
* *
37979530 TCTGGGACCTGGCATCGGCCTCGATATGTGA
66 TCTAGGACATGGCATCGGCCTCGATATGTGA
* *
37979561 GCCAATATAAGACCATGTTTGGAACATGGCATCCGCATTAATATGAGAGCTAGTGTAAGACCATG
1 GCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATTAATATGAGAGCTAGTGTAAGACCATG
*
37979626 TCTGGGACATGGCATCGGCCTCGATATGTGA
66 TCTAGGACATGGCATCGGCCTCGATATGTGA
* * * * *
37979657 GCTAGTGTAAGACTATGTTTGGAACATGGCATCGGCGTTAATATGAGAGCTAGTGTAAGACTATG
1 GCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATTAATATGAGAGCTAGTGTAAGACCATG
* * * * *
37979722 TTTAGGACATGGCATCGGCCTCCACATCTGG
66 TCTAGGACATGGCATCGGCCTCGATATGTGA
* * * * *
37979753 GCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCACTGATATATGAGAGCCAGTGTAAGACCA
1 GCCAATGTAAGACCATGTTTGGAACATGGCATCGGCA-TTA-ATATGAGAGCTAGTGTAAGACCA
*
37979818 TGTCTAAGACATGGCATCGGC
64 TGTCTAGGACATGGCATCGGC
37979839 ATCTTACCCT
Statistics
Matches: 250, Mismatches: 26, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
96 208 0.83
97 2 0.01
98 40 0.16
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (96 bp):
GCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATTAATATGAGAGCTAGTGTAAGACCATG
TCTAGGACATGGCATCGGCCTCGATATGTGA
Found at i:37987953 original size:2 final size:2
Alignment explanation
Indices: 37987906--37987936 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
37987896 AGAATACAAG
37987906 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37987937 TTAATAATGC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:37988230 original size:19 final size:18
Alignment explanation
Indices: 37988206--37988273 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 18
37988196 TATGTGTTAA
37988206 AAAATTTTAAAAAATAATT
1 AAAATTTTAAAAAA-AATT
37988225 AAAATTTT-AAAAAAATT
1 AAAATTTTAAAAAAAATT
*
37988242 AAAA-ATTAAAAAGAAATTT
1 AAAATTTTAAAAA-AAA-TT
*
37988261 AAAATTATAAAAA
1 AAAATTTTAAAAA
37988274 CTAAAAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
16 2 0.05
17 12 0.29
18 8 0.19
19 14 0.33
20 6 0.14
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (18 bp):
AAAATTTTAAAAAAAATT
Found at i:37988246 original size:18 final size:18
Alignment explanation
Indices: 37988205--37988273 Score: 70
Period size: 18 Copynumber: 3.8 Consensus size: 18
37988195 TTATGTGTTA
37988205 AAAAATTTTAAAAAATAATT
1 AAAAATTTT-AAAAA-AATT
37988225 -AAAATTTTAAAAAAATT
1 AAAAATTTTAAAAAAATT
*
37988242 AAAAA-TTAAAAAGAAATT
1 AAAAATTTTAAAA-AAATT
* *
37988260 TAAAATTATAAAAA
1 AAAAATTTTAAAAA
37988274 CTAAAAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
17 10 0.24
18 19 0.45
19 13 0.31
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.30
Consensus pattern (18 bp):
AAAAATTTTAAAAAAATT
Found at i:37988440 original size:21 final size:19
Alignment explanation
Indices: 37988400--37988445 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 19
37988390 GGAATTTGGT
37988400 TTTTA-GAAAATTTTAGAA
1 TTTTATGAAAATTTTAGAA
37988418 TTTTATGAAAATTTTAAAGAA
1 TTTTATGAAAATTTT--AGAA
37988439 TTTTATG
1 TTTTATG
37988446 GTTTGTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.20
19 9 0.36
21 11 0.44
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (19 bp):
TTTTATGAAAATTTTAGAA
Found at i:37988709 original size:19 final size:20
Alignment explanation
Indices: 37988685--37988727 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
37988675 AAAATAGATT
* *
37988685 AATAATTTT-TTAGTTTTTA
1 AATAATTTTATGAGTTTTAA
37988704 AATAATTTTATGAGTTTTAA
1 AATAATTTTATGAGTTTTAA
37988724 AATA
1 AATA
37988728 TTTGGGAGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (20 bp):
AATAATTTTATGAGTTTTAA
Found at i:37993257 original size:4 final size:4
Alignment explanation
Indices: 37993248--37993301 Score: 76
Period size: 4 Copynumber: 13.8 Consensus size: 4
37993238 TACAAACTAT
*
37993248 TTTA TTTA TTCT- TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTCA TTTA
1 TTTA TTTA TT-TA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
37993296 -TTA TTT
1 TTTA TTT
37993302 CTTCAACCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
3 4 0.09
4 40 0.89
5 1 0.02
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:37993377 original size:3 final size:3
Alignment explanation
Indices: 37993369--37993413 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
37993359 ATTTATTTAT
37993369 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37993414 GTGTGATGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:37993972 original size:24 final size:25
Alignment explanation
Indices: 37993919--37993977 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
37993909 ATATTATAAA
37993919 AATATTAT-TTAATTAAAATATTAT
1 AATATTATATTAATTAAAATATTAT
*
37993943 AA-ATTATATTAATTAAAA-GTTA-
1 AATATTATATTAATTAAAATATTAT
37993965 AGATATTATATTA
1 A-ATATTATATTA
37993978 TAGGAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
22 1 0.03
23 9 0.29
24 21 0.68
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (25 bp):
AATATTATATTAATTAAAATATTAT
Found at i:37994329 original size:9 final size:9
Alignment explanation
Indices: 37994284--37994331 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
37994274 TATTATAGTG
37994284 TATT-ATTA
1 TATTAATTA
37994292 TTATTAATT-
1 -TATTAATTA
37994301 TATTAATT-
1 TATTAATTA
37994309 TA-TAATTTA
1 TATTAA-TTA
37994318 TATTAATTA
1 TATTAATTA
37994327 TATTA
1 TATTA
37994332 TGAGATTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
7 3 0.09
8 12 0.34
9 14 0.40
10 6 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TATTAATTA
Found at i:37994635 original size:16 final size:16
Alignment explanation
Indices: 37994604--37994634 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37994594 ACAGGGGAAG
37994604 GAAAGAAAGAAGAAAA
1 GAAAGAAAGAAGAAAA
37994620 GAAAGAAA-AAGAAAA
1 GAAAGAAAGAAGAAAA
37994635 ATTAAGGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
GAAAGAAAGAAGAAAA
Found at i:37995096 original size:21 final size:21
Alignment explanation
Indices: 37995046--37995127 Score: 69
Period size: 21 Copynumber: 3.9 Consensus size: 21
37995036 GGCTTTGCCA
37995046 ATCAGGCAAT-TTATGTGTCGT
1 ATCAGGC-ATCTTATGTGTCGT
* *
37995067 ATTTGAGGCATCTTGTGTGTCGT
1 A--TCAGGCATCTTATGTGTCGT
* **
37995090 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCATCTTATGTGTCGT
*
37995111 TTCAGGCA-CTTATGTGT
1 ATCAGGCATCTTATGTGT
37995128 TGTAACGCCC
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
20 7 0.14
21 25 0.50
22 2 0.04
23 16 0.32
ACGTcount: A:0.17, C:0.18, G:0.27, T:0.38
Consensus pattern (21 bp):
ATCAGGCATCTTATGTGTCGT
Found at i:37996547 original size:93 final size:93
Alignment explanation
Indices: 37996438--37996608 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
37996428 GCCCCTAAAT
* * *
37996438 GAACTCGAACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCA
37996502 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
37996531 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
37996596 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37996609 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37996605 original size:46 final size:45
Alignment explanation
Indices: 37996435--37996605 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 45
37996425 CCCGCCCCTA
* * * *
37996435 AATGAACTCGAACTCAACTCAACGAGCTT-GGGCGTTCGCATCCAT
1 AATGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCAT
* *
37996480 AAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T
1 -AATGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCAT
* *
37996528 CACGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
1 AATGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
*
37996573 AAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 AA-TGAACTCGGACTCAACTCAACGAGTTCGGA
37996606 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 55 0.53
47 30 0.29
48 1 0.01
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (45 bp):
AATGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
Found at i:37996624 original size:46 final size:45
Alignment explanation
Indices: 37996483--37996624 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
37996473 CATCCATAAA
37996483 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AG
* * * *
37996530 CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTAG
*
37996576 TGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAG
37996622 TGA
1 TGA
37996625 CATGTCACTT
Statistics
Matches: 77, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 32 0.42
47 31 0.40
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAG
Found at i:37999016 original size:15 final size:15
Alignment explanation
Indices: 37998987--37999036 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
37998977 CAAAGATAAC
*
37998987 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
37999001 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
37999016 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
37999031 AAGAAA
1 AAGAAA
37999037 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:37999045 original size:15 final size:15
Alignment explanation
Indices: 37998998--37999045 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
37998988 AGAAAACCGA
37998998 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
37999012 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
37999028 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
37999043 ATA
1 ATA
37999046 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:38002123 original size:92 final size:91
Alignment explanation
Indices: 38001960--38002127 Score: 284
Period size: 92 Copynumber: 1.8 Consensus size: 91
38001950 GCCCATAAGT
* *
38001960 GAACTCGACTCAACTCAACGAGCTTGGGCGTTCGCATCCATAAGTGAACTCGACTCAACTCAACG
1 GAACTCGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAACG
38002025 AGTTCGGATGCCTAGTTACATCTCAC
66 AGTTCGGATGCCTAGTTACATCTCAC
*
38002051 GAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCATAAGTGAACTCGACTCAACTCAA
1 GAACTC-GACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCGACTCAACTCAA
38002115 CGAGTTCGGATGC
64 CGAGTTCGGATGC
38002128 TCAACCATCC
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
91 8 0.11
92 64 0.89
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (91 bp):
GAACTCGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:38002124 original size:45 final size:45
Alignment explanation
Indices: 38001952--38002124 Score: 201
Period size: 45 Copynumber: 3.8 Consensus size: 45
38001942 TGTAACCCGC
* * *
38001952 CCATAAGTGAACTCGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGACTCAACTCAACGAG-TTCGGACATTTGCAT
* *
38001997 CCATAAGTGAACTCGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
38002046 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGGACATTTGCAT
38002089 CCATAAGTGAACTCGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGACTCAACTCAACGAGTTCGGA
38002125 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 6 0.06
44 4 0.04
45 56 0.52
46 12 0.11
47 24 0.22
48 2 0.02
49 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:38006131 original size:21 final size:21
Alignment explanation
Indices: 38006106--38006149 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
38006096 TAGTAAAGAG
*
38006106 AATATAAAATCGGAAAGATGA
1 AATATAAAATCGGAAAAATGA
* *
38006127 AATATATAATTGGAAAAATGA
1 AATATAAAATCGGAAAAATGA
38006148 AA
1 AA
38006150 GGAAAGGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.59, C:0.02, G:0.16, T:0.23
Consensus pattern (21 bp):
AATATAAAATCGGAAAAATGA
Found at i:38008226 original size:3 final size:3
Alignment explanation
Indices: 38008211--38008386 Score: 125
Period size: 3 Copynumber: 58.3 Consensus size: 3
38008201 AAATTTAATC
38008211 TAT TAT T-T CTAT TAT TAT TA- TAT T-T CTAT GTAT TA- TAT T-T CTAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TAT TAT -TAT
* * * * *
38008255 T-T GTATT TAT GTAT TAA TAT CAT TAT T-T TTT TAT TTT TA- CAT TAT
1 TAT -TA-T TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
38008300 TAT TAT CAT TAT TAT TAC TAT TAG TAC TAT TAT TAT TTT CTAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
38008346 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CTAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT T
38008387 GTGTATTTAT
Statistics
Matches: 138, Mismatches: 19, Indels: 32
0.73 0.10 0.17
Matches are distributed among these distances:
2 11 0.08
3 110 0.80
4 16 0.12
5 1 0.01
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:38013085 original size:529 final size:529
Alignment explanation
Indices: 38012087--38013149 Score: 1833
Period size: 529 Copynumber: 2.0 Consensus size: 529
38012077 CATAGCAAGG
** *
38012087 AGTATTTATTTTGTTTAATGCCAAAAAGTTGGCATTCGAGGCCTTACGAGGGTGCGAACGCACGT
1 AGTATTTATTTTGTTTAATGCCAAAAAGTCAGCATTCGAGGCCTTACGAGGGTGCAAACGCACGT
* *
38012152 GGGGTGATCCGAACCCATAAAGCGTGGACAGCAGGCTGTAGAGGCTGCCACGAGCGCTCCGTAGA
66 GGGGCGATCCGAACCCATAAAGCGTGGACAGCAGGCTGTAGAGGCCGCCACGAGCGCTCCGTAGA
* *
38012217 CTTGGGTTTCGATGGGCCGAATGGGCTCGATGGGCTCGTGGGTCCGCTTGTGTAAATTTAACTGT
131 CTTAGGTTTCGATGGGCCGAATGGGCCCGATGGGCTCGTGGGTCCGCTTGTGTAAATTTAACTGT
* * *
38012282 GGGTGAGAAGTAGTTGGGCTTGTCATGTCACTTACATGGCATAGGCCATTCTGGGCCACGTTGGG
196 GGGTGAGAAGTAGTTGGGCTTGTCATGTCACGTACAGGGCATAGGCCATTCTGGGCCACATTGGG
*
38012347 CCGAAGTGGGCCGTGTAGGCCTAATGGGCTCGTGGGCCCCACACGGATGAAATCTGCGGTAAGTG
261 CCGAAGTGGGCCGTGTAGGCCTAATGGGCTCGTGGGCCCCACACGGAAGAAATCTGCGGTAAGTG
* * * *
38012412 ACAAATTATGAACTGGGCTATGGTGTTCGCATAGCTGTCACTGAAACTGGGCTAAATGGTCCACA
326 ACAAATTATGAACTGGGCTATGGTATTCGCATAACCGTCACTGAAACTGGGCTAAATGGGCCACA
38012477 CGAGTGTGTGGGCCCACTTGGGCCGAGGCCTATTTGCACCGTTATGTCTGTTTAGGTTACTTAAG
391 CGAGTGTGTGGGCCCACTTGGGCCGAGGCCTATTTGCACCGTTATGTCTGTTTAGGTTACTTAAG
** * *
38012542 TCACTCGAGGAGATGATGAACCATCTGTTGGGTTGTTAAGACCTCTATTTGTAAAATTACCGAAA
456 TCACTCGAGGAGATGATGAACCATCTGTTGGGTCATTAAGACCCCGATTTGTAAAATTACCGAAA
*
38012607 TACCCTTGT
521 TACCCTTAT
38012616 AGTATTTATTTTG-TTAATGCCAAAAAGTCAGCATTCGAGGCCTTACGAGGGTGCAAACGCACGT
1 AGTATTTATTTTGTTTAATGCCAAAAAGTCAGCATTCGAGGCCTTACGAGGGTGCAAACGCACGT
38012680 GGGGCGATCCGAACCCATAAAGCGTGGAC-GACAGGCTGTAGAGGCCGCCACGAGCGCTCTCGTA
66 GGGGCGATCCGAACCCATAAAGCGTGGACAG-CAGGCTGTAGAGGCCGCCACGAGCGCTC-CGTA
38012744 GACTTAGGTTTCGATGGGCCGAATGGGCCCGATGGGCTCGTGGGTCCGCTTGTGTAAATTTAACT
129 GACTTAGGTTTCGATGGGCCGAATGGGCCCGATGGGCTCGTGGGTCCGCTTGTGTAAATTTAACT
*
38012809 GTGGGTGAGAAGTAGTTGGGCTTGTCATGTCACGTACAGGGCATAGGCCGTTCTGGGCCACATTG
194 GTGGGTGAGAAGTAGTTGGGCTTGTCATGTCACGTACAGGGCATAGGCCATTCTGGGCCACATTG
38012874 GGCCGAAGTGGGCCGTGTAGGCCTAATGGGCTCGTGGGCCCCACACGGAAGAAATCTGCGGTAAG
259 GGCCGAAGTGGGCCGTGTAGGCCTAATGGGCTCGTGGGCCCCACACGGAAGAAATCTGCGGTAAG
* * * *
38012939 TGACAAATTATGAATTGGGCTATGGTATTCGCATAACCGTGACTGGAATTGGGCTAAATGGGCCA
324 TGACAAATTATGAACTGGGCTATGGTATTCGCATAACCGTCACTGAAACTGGGCTAAATGGGCCA
* *
38013004 CACGAGTGTGTGGGCCCACTTGGGTCGAGGTCTATTTGCACCGTTATGTCTGTTTAGGTTACTTA
389 CACGAGTGTGTGGGCCCACTTGGGCCGAGGCCTATTTGCACCGTTATGTCTGTTTAGGTTACTTA
* *
38013069 AGTTACTCGAGGAGATGATGGACCATCTGTTGGGTCATTAAGACCCCGATTTGTAAAATTACCGA
454 AGTCACTCGAGGAGATGATGAACCATCTGTTGGGTCATTAAGACCCCGATTTGTAAAATTACCGA
38013134 AATACCCTTAT
519 AATACCCTTAT
38013145 AGTAT
1 AGTAT
38013150 AAAATGACCA
Statistics
Matches: 503, Mismatches: 29, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
527 1 0.00
528 103 0.20
529 399 0.79
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (529 bp):
AGTATTTATTTTGTTTAATGCCAAAAAGTCAGCATTCGAGGCCTTACGAGGGTGCAAACGCACGT
GGGGCGATCCGAACCCATAAAGCGTGGACAGCAGGCTGTAGAGGCCGCCACGAGCGCTCCGTAGA
CTTAGGTTTCGATGGGCCGAATGGGCCCGATGGGCTCGTGGGTCCGCTTGTGTAAATTTAACTGT
GGGTGAGAAGTAGTTGGGCTTGTCATGTCACGTACAGGGCATAGGCCATTCTGGGCCACATTGGG
CCGAAGTGGGCCGTGTAGGCCTAATGGGCTCGTGGGCCCCACACGGAAGAAATCTGCGGTAAGTG
ACAAATTATGAACTGGGCTATGGTATTCGCATAACCGTCACTGAAACTGGGCTAAATGGGCCACA
CGAGTGTGTGGGCCCACTTGGGCCGAGGCCTATTTGCACCGTTATGTCTGTTTAGGTTACTTAAG
TCACTCGAGGAGATGATGAACCATCTGTTGGGTCATTAAGACCCCGATTTGTAAAATTACCGAAA
TACCCTTAT
Found at i:38013507 original size:32 final size:32
Alignment explanation
Indices: 38013460--38013549 Score: 117
Period size: 32 Copynumber: 2.8 Consensus size: 32
38013450 TCATATGGGT
* *
38013460 TTGGTATTGAAATGGGTTAGGCCCAACTGATA
1 TTGGTTTTGAAATGGGCTAGGCCCAACTGATA
* *
38013492 TTGGTTTTGATATGGGCTAGGGCCAACTGATA
1 TTGGTTTTGAAATGGGCTAGGCCCAACTGATA
* * *
38013524 TTGATTCTGAGATGGGCTAGGCCCAA
1 TTGGTTTTGAAATGGGCTAGGCCCAA
38013550 TTGAGACTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.31
Consensus pattern (32 bp):
TTGGTTTTGAAATGGGCTAGGCCCAACTGATA
Found at i:38015307 original size:26 final size:26
Alignment explanation
Indices: 38015197--38015362 Score: 136
Period size: 26 Copynumber: 6.6 Consensus size: 26
38015187 CAAAATGAAT
*
38015197 AATAATAATA-AAAAG-TTTCAAATA
1 AATAATAATATAAAAGATTTAAAATA
* *
38015221 AATAAT-ATATGAAAA-ACTTAAAATT
1 AATAATAATAT-AAAAGATTTAAAATA
* * *
38015246 AATCATAATGA-AACAG-TTTAATATA
1 AATAATAAT-ATAAAAGATTTAAAATA
*
38015271 AATAAT-GTATAAAA-ATTTAAAATA
1 AATAATAATATAAAAGATTTAAAATA
* *
38015295 GATAATACATATAAAATAGTTTAAAATA
1 AATAATA-ATATAAAAGA-TTTAAAATA
38015323 AATAATAA-ATAAAAGATATTAAAATA
1 AATAATAATATAAAAGAT-TTAAAATA
38015349 AATAAT-ATATAAAA
1 AATAATAATATAAAA
38015363 TGAAGCTAAA
Statistics
Matches: 112, Mismatches: 16, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
23 4 0.04
24 23 0.21
25 31 0.28
26 36 0.32
27 3 0.03
28 15 0.13
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (26 bp):
AATAATAATATAAAAGATTTAAAATA
Found at i:38015330 original size:22 final size:25
Alignment explanation
Indices: 38015197--38015362 Score: 98
Period size: 25 Copynumber: 6.5 Consensus size: 25
38015187 CAAAATGAAT
*
38015197 AATAATAATAAAA-AGT-TTCAAATA
1 AATAATAATAAAAGA-TATTAAAATA
* *
38015221 AATAATATATGAAAA-A-CTTAAAATT
1 AATAATA-AT-AAAAGATATTAAAATA
* *
38015246 AATCATAATGAAACAG-T-TTAATATA
1 AATAATAAT-AAA-AGATATTAAAATA
*
38015271 AATAATGTATAAAA-AT-TTAAAATA
1 AATAAT-AATAAAAGATATTAAAATA
*
38015295 GATAATACATATAAA-ATAGTTTAAAATA
1 AATAATA-ATA-AAAGATA--TTAAAATA
38015323 AATAATAAATAAAAGATATTAAAATA
1 AATAAT-AATAAAAGATATTAAAATA
38015349 AATAATATATAAAA
1 AATAATA-ATAAAA
38015363 TGAAGCTAAA
Statistics
Matches: 115, Mismatches: 11, Indels: 30
0.74 0.07 0.19
Matches are distributed among these distances:
24 30 0.26
25 35 0.30
26 27 0.23
27 3 0.03
28 19 0.17
29 1 0.01
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (25 bp):
AATAATAATAAAAGATATTAAAATA
Found at i:38015361 original size:52 final size:51
Alignment explanation
Indices: 38015155--38015363 Score: 176
Period size: 52 Copynumber: 4.1 Consensus size: 51
38015145 TAAAGTAAAT
* * * *
38015155 AATAGTTTAAAATAAATCATTAAA-AAATGACTCAAAATGAATAATAATAATAA
1 AATAGTTTAAAATAAAT-AATAAATAAA-AACTTAAAATAAATAATAAT-ATAA
* * * * *
38015208 AA-AGTTTCAAATAAATAATATATGAAAAACTTAAAATTAATCAT-A-ATGA
1 AATAGTTTAAAATAAATAATAAAT-AAAAACTTAAAATAAATAATAATATAA
* * ** * *
38015257 AACAGTTTAATATAAATAATGTATAAAAATTTAAAATAGATAATACATATAA
1 AATAGTTTAAAATAAATAATAAATAAAAACTTAAAATAAATAATA-ATATAA
*
38015309 AATAGTTTAAAATAAATAATAAATAAAAGATATTAAAATAAATAAT-ATATAA
1 AATAGTTTAAAATAAATAATAAATAAAA-A-CTTAAAATAAATAATAATATAA
38015361 AAT
1 AAT
38015364 GAAGCTAAAA
Statistics
Matches: 126, Mismatches: 22, Indels: 17
0.76 0.13 0.10
Matches are distributed among these distances:
49 21 0.17
50 18 0.14
51 6 0.05
52 62 0.49
53 6 0.05
54 13 0.10
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (51 bp):
AATAGTTTAAAATAAATAATAAATAAAAACTTAAAATAAATAATAATATAA
Found at i:38017044 original size:134 final size:136
Alignment explanation
Indices: 38016881--38017137 Score: 347
Period size: 134 Copynumber: 1.9 Consensus size: 136
38016871 GATTCGTAAC
* * * * *
38016881 TTGTAGCTTTAATCTGCTCCACTATAACTTCAGCGAAATGAGATTTGCTATCTTCAGTCTGCTCC
1 TTGTAGCTTCAATCTGCTCCACTACAACTTCAGCGAAATAAGATTCGCTATCTTCAGTCTGATCC
*
38016946 GCTGCAACTTC-A-GGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAAGACAAGATCCGC
66 ACTGCAACTTCGATGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAAGACAAGATCCGC
38017009 CATAAA
131 CATAAA
* * * * * *
38017015 TTGTAGCTTCAATCTGTTCCACTACAACTTTAGGGAAATAAGATTCGTTGTTTTCAGTCTGATCC
1 TTGTAGCTTCAATCTGCTCCACTACAACTTCAGCGAAATAAGATTCGCTATCTTCAGTCTGATCC
38017080 ACTGCAACTTCAGGGAGATGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
66 ACTGCAACTTC-----GATGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
38017138 CTTCAGAAAG
Statistics
Matches: 104, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
134 64 0.62
140 1 0.01
141 39 0.38
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (136 bp):
TTGTAGCTTCAATCTGCTCCACTACAACTTCAGCGAAATAAGATTCGCTATCTTCAGTCTGATCC
ACTGCAACTTCGATGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAAGACAAGATCCGC
CATAAA
Found at i:38017792 original size:46 final size:47
Alignment explanation
Indices: 38017736--38017837 Score: 154
Period size: 46 Copynumber: 2.2 Consensus size: 47
38017726 ATTTTTGGTT
* *
38017736 TCTTCCATCCATCCCACTGCAACTCAA-GGGTATAGGATTTGTAT-CA
1 TCTTCAATCCATCCCACTGCAACTCAAGGGGTATAAGATTTGT-TGCA
*
38017782 TCTTCAATCCATCCCACTGCAACTCAAGGGGTATAAGATTTGTTGCT
1 TCTTCAATCCATCCCACTGCAACTCAAGGGGTATAAGATTTGTTGCA
38017829 TCTTCAATC
1 TCTTCAATC
38017838 AATTAATCTG
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
46 27 0.53
47 24 0.47
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.32
Consensus pattern (47 bp):
TCTTCAATCCATCCCACTGCAACTCAAGGGGTATAAGATTTGTTGCA
Found at i:38017877 original size:42 final size:42
Alignment explanation
Indices: 38017813--38017897 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
38017803 ACTCAAGGGG
38017813 TATAAGATTTGTTGCTTCTTCAATCAATTAATCTGGGTAACA
1 TATAAGATTTGTTGCTTCTTCAATCAATTAATCTGGGTAACA
* *
38017855 TATAGGATTTGTTGCTTCTTCAATCAATTGATCTGGGTAACA
1 TATAAGATTTGTTGCTTCTTCAATCAATTAATCTGGGTAACA
38017897 T
1 T
38017898 GACTAGATGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.41
Consensus pattern (42 bp):
TATAAGATTTGTTGCTTCTTCAATCAATTAATCTGGGTAACA
Found at i:38018366 original size:53 final size:53
Alignment explanation
Indices: 38018283--38018435 Score: 243
Period size: 53 Copynumber: 2.9 Consensus size: 53
38018273 GCATAGCTCG
* * *
38018283 AAATGAATAAATTAATCAAAGATAGCAAATGCAATAAGAAGAAAATTAACTCA
1 AAATGAATAAGTTAATCAAAGATAGCAAATGTAATAAGAAGGAAATTAACTCA
* **
38018336 AAATGAATAAGTTAATCAAAGATAGAAAATGTAATAAGAAGGAAATTAACTTG
1 AAATGAATAAGTTAATCAAAGATAGCAAATGTAATAAGAAGGAAATTAACTCA
*
38018389 AAATGAATAAGTTCATCAAAGATAGCAAATGTAATAAGAAGGAAATT
1 AAATGAATAAGTTAATCAAAGATAGCAAATGTAATAAGAAGGAAATT
38018436 GATTGGGACT
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 92 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.23
Consensus pattern (53 bp):
AAATGAATAAGTTAATCAAAGATAGCAAATGTAATAAGAAGGAAATTAACTCA
Found at i:38022925 original size:17 final size:17
Alignment explanation
Indices: 38022903--38022936 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
38022893 AGAAAAGTCG
*
38022903 TGTATTCCTCTGTTAGA
1 TGTATTCCTCCGTTAGA
38022920 TGTATTCCTCCGTTAGA
1 TGTATTCCTCCGTTAGA
38022937 CTATCACCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44
Consensus pattern (17 bp):
TGTATTCCTCCGTTAGA
Found at i:38024731 original size:26 final size:28
Alignment explanation
Indices: 38024673--38024873 Score: 109
Period size: 26 Copynumber: 7.8 Consensus size: 28
38024663 TAAATAACAG
* *
38024673 TTTAAAATAAAT-CT-T-TAAAAAACGA
1 TTTAAAATAAATAATATATAAAAAAAGA
*
38024698 TTTAAAATGAATAATA-ATAAAAAAAG-
1 TTTAAAATAAATAATATATAAAAAAAGA
* * *
38024724 TTTCAAATAAATAATATAT-GAAAAA-C
1 TTTAAAATAAATAATATATAAAAAAAGA
* * *
38024750 TTT-AAA-AAATCATA-AT-GAAACAG-
1 TTTAAAATAAATAATATATAAAAAAAGA
* *
38024773 TTTAATATAAATAATGTAT---AAAA-A
1 TTTAAAATAAATAATATATAAAAAAAGA
* * *
38024797 TTTAAAATAGATAATACATATAAAATAG-
1 TTTAAAATAAATAATATATA-AAAAAAGA
*
38024825 TTTAAAATAAAT-A-ATA-AATAAAAGA
1 TTTAAAATAAATAATATATAAAAAAAGA
38024850 TATTAAAATAAATAATATATAAAA
1 T-TTAAAATAAATAATATATAAAA
38024874 TGAAGCTAAA
Statistics
Matches: 134, Mismatches: 22, Indels: 36
0.70 0.11 0.19
Matches are distributed among these distances:
23 10 0.07
24 32 0.24
25 22 0.16
26 38 0.28
27 12 0.09
28 17 0.13
29 3 0.02
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (28 bp):
TTTAAAATAAATAATATATAAAAAAAGA
Found at i:38024829 original size:28 final size:26
Alignment explanation
Indices: 38024697--38024874 Score: 126
Period size: 26 Copynumber: 7.0 Consensus size: 26
38024687 TTAAAAAACG
* *
38024697 ATTTAAAATGAATAATAATA-AAAAA
1 ATTTAAAATAAATAATAATATAAAAT
*
38024722 AGTTTCAAATAAATAAT-ATATGAAAA-
1 A-TTTAAAATAAATAATAATAT-AAAAT
* *
38024748 ACTTT-AAA-AAATCATAATGA-AACA-
1 A-TTTAAAATAAATAATAAT-ATAAAAT
* * *
38024772 GTTTAATATAAATAAT-GTATAAAA-
1 ATTTAAAATAAATAATAATATAAAAT
*
38024796 ATTTAAAATAGATAATACATATAAAAT
1 ATTTAAAATAAATAATA-ATATAAAAT
*
38024823 AGTTTAAAATAAATAATAA-ATAAAAG
1 A-TTTAAAATAAATAATAATATAAAAT
38024849 ATATTAAAATAAATAAT-ATATAAAAT
1 AT-TTAAAATAAATAATAATATAAAAT
38024875 GAAGCTAAAA
Statistics
Matches: 122, Mismatches: 17, Indels: 27
0.73 0.10 0.16
Matches are distributed among these distances:
23 4 0.03
24 28 0.23
25 17 0.14
26 52 0.43
27 6 0.05
28 15 0.12
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (26 bp):
ATTTAAAATAAATAATAATATAAAAT
Found at i:38024835 original size:52 final size:51
Alignment explanation
Indices: 38024671--38024874 Score: 172
Period size: 52 Copynumber: 4.0 Consensus size: 51
38024661 AGTAAATAAC
* * * *
38024671 AGTTTAAAATAAAT-CTTTAAAAAACGATTTAAAAT-GAATAATA-ATAAAAAA
1 AGTTTAAAATAAATAATATATAAAA-GATTTAAAATAG-ATAATATAT-AAAAT
* * * *
38024722 AGTTTCAAATAAATAATATATGAAAA-ACTTTAAAA-A-ATCATA-ATGAAAC
1 AGTTTAAAATAAATAATATAT-AAAAGA-TTTAAAATAGATAATATATAAAAT
* *
38024771 AGTTTAATATAAATAATGTATAAAA-ATTTAAAATAGATAATACATATAAAAT
1 AGTTTAAAATAAATAATATATAAAAGATTTAAAATAGATAAT--ATATAAAAT
* *
38024823 AGTTTAAAATAAATAATAAATAAAAGATATTAAAATAAATAATATATAAAAT
1 AGTTTAAAATAAATAATATATAAAAGAT-TTAAAATAGATAATATATAAAAT
38024875 GAAGCTAAAA
Statistics
Matches: 125, Mismatches: 17, Indels: 21
0.77 0.10 0.13
Matches are distributed among these distances:
47 7 0.06
48 6 0.05
49 25 0.20
50 7 0.06
51 15 0.12
52 46 0.37
53 6 0.05
54 13 0.10
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.31
Consensus pattern (51 bp):
AGTTTAAAATAAATAATATATAAAAGATTTAAAATAGATAATATATAAAAT
Found at i:38032161 original size:68 final size:70
Alignment explanation
Indices: 38032089--38032286 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
38032079 ACACCCTGTA
* * * *
38032089 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
38032151 ATAAAT
65 ATAAAT
*
38032157 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
38032222 ATAAAT
65 ATAAAT
*
38032228 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
38032287 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:38032200 original size:41 final size:41
Alignment explanation
Indices: 38032155--38032272 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
38032145 TGAAAGATAA
38032155 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
38032196 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
38032226 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
38032267 ATGTAG
1 ATGTAG
38032273 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:38032212 original size:71 final size:71
Alignment explanation
Indices: 38032123--38032286 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
38032113 GAGATGTATC
38032123 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
38032188 AGGACA
66 AGGACA
38032194 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
38032259 AGGACA
66 AGGACA
38032265 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
38032287 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:38039730 original size:68 final size:70
Alignment explanation
Indices: 38039658--38039855 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
38039648 ACACCCTGTA
* * * *
38039658 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
38039720 ATAAAT
65 ATAAAT
*
38039726 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
38039791 ATAAAT
65 ATAAAT
*
38039797 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
38039856 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:38039769 original size:41 final size:41
Alignment explanation
Indices: 38039724--38039841 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
38039714 TGAAAGATAA
38039724 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
38039765 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
38039795 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
38039836 ATGTAG
1 ATGTAG
38039842 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:38039781 original size:71 final size:71
Alignment explanation
Indices: 38039692--38039855 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
38039682 GAGATGTATC
38039692 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
38039757 AGGACA
66 AGGACA
38039763 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
38039828 AGGACA
66 AGGACA
38039834 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
38039856 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:38041259 original size:18 final size:18
Alignment explanation
Indices: 38041213--38041260 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
38041203 CTACATCAAC
38041213 AAATGAATTTAAACTTAAA
1 AAAT-AATTTAAACTTAAA
*
38041232 AAATAA-TTAAAGTTTAAA
1 AAATAATTTAAA-CTTAAA
38041250 AAA-AATTTAAA
1 AAATAATTTAAA
38041261 ACCCCAAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 7 0.27
18 15 0.58
19 4 0.15
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (18 bp):
AAATAATTTAAACTTAAA
Found at i:38043350 original size:70 final size:69
Alignment explanation
Indices: 38043247--38043402 Score: 231
Period size: 70 Copynumber: 2.2 Consensus size: 69
38043237 TATACATCTT
* *
38043247 TCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAGTAGTAA
1 TCAACCAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAGCAGTAA
38043312 AATG
66 AATG
* * *
38043316 TCAACCAATCATTTCAAGAAAACATACAAAATATGTTATGCTAACAAACTGATCCTATAGCAGTA
1 TCAACCAATCATTTCAA-AAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAGCAGTA
*
38043381 AGATG
65 AAATG
* *
38043386 TTAACCAACCATTTCAA
1 TCAACCAATCATTTCAA
38043403 CAAATCATTT
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
69 16 0.21
70 62 0.79
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.26
Consensus pattern (69 bp):
TCAACCAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAGCAGTAA
AATG
Found at i:38043830 original size:159 final size:160
Alignment explanation
Indices: 38043553--38043923 Score: 385
Period size: 159 Copynumber: 2.3 Consensus size: 160
38043543 GATTGAGAAC
* * * *** **
38043553 AAAAATCAGAACCCCAAATTAGATTTAAATAATTTGGAATTGACATTAAAAAAGTGTTTACGATA
1 AAAAATCAGAACACAAAATTAGATTAAAATAATTTGGAATTGACATTAAAAAAACCTAGACGATA
* * * * * *
38043618 TACCTGTGATCCAGTTGTGTTAGGCTGAATGCATGGCGTTCTGTTATTCTTTTTT-GGCTTCTAG
66 TACCTGCGATCCAGTTGTATTAGACTGAATACATGGCGTTATGTTATTATTTTTTGGGCTTCTAG
* * **
38043682 TT-TGTGTACTCGTACCTGAATAAGATTAAA
131 TTCT-TGTACTCATACCAGAATAAGACCAAA
* * * *
38043712 AAAAATTAGAACACAAAATTAGATTAAAATATTTTTGAATTGACATTAAAAATAACCTAGACGGT
1 AAAAATCAGAACACAAAATTAGATTAAAATAATTTGGAATTGACATTAAAAA-AACCTAGACGAT
* * *
38043777 ATACCTGCGATCCAGTTGTATTAGACTGAATAC-TTGTGTTATGTTGTTATTTTTTGGGCTTCTA
65 ATACCTGCGATCCAGTTGTATTAGACTGAATACATGGCGTTATGTTATTATTTTTTGGGCTTCTA
*
38043841 GTTCTTGTACTCATACCAGACTAAGACC-AA
130 GTTCTTGTACTCATACCAGAATAAGACCAAA
* ** * * *
38043871 AAAAATCA-AA-ATCCAAATTAGATTTTAATAGTTTGGAATTGACAATGAAAAAA
1 AAAAATCAGAACA-CAAAATTAGATTAAAATAATTTGGAATTGACATTAAAAAAA
38043924 TATTTATGAT
Statistics
Matches: 174, Mismatches: 34, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 34 0.20
159 72 0.41
160 64 0.37
161 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (160 bp):
AAAAATCAGAACACAAAATTAGATTAAAATAATTTGGAATTGACATTAAAAAAACCTAGACGATA
TACCTGCGATCCAGTTGTATTAGACTGAATACATGGCGTTATGTTATTATTTTTTGGGCTTCTAG
TTCTTGTACTCATACCAGAATAAGACCAAA
Found at i:38043925 original size:160 final size:158
Alignment explanation
Indices: 38043553--38043925 Score: 380
Period size: 160 Copynumber: 2.3 Consensus size: 158
38043543 GATTGAGAAC
* * **
38043553 AAAAATCAGAACCCCAAATTAGATTTAAATAATTTGGAATTGACATTAAAAAAGT-GTTTACGAT
1 AAAAATCAGAACACCAAATTAGATTTAAATAATTTGGAATTGACA-TAAAAAA-TACTAGACGAT
* * * * * *
38043617 ATACCTGTGATCCAGTTGTGTTAGGCTGAATGCATGGCGTTCTGTTATTCTTTTTTGGCTTCTAG
64 ATACCTGCGATCCAGTTGTATTAGACTGAATACATGGCGTTATGTTATTATTTTTTGGCTTCTAG
* * *
38043682 TTTGTGTACTCGTACCTGAATAAGATTAAA
129 TTTGTGTACTCATACCAGAATAAGATCAAA
* * * * * * *
38043712 AAAAATTAGAACACAAAATTAGATTAAAATATTTTTGAATTGACATTAAAAATAACCTAGACGGT
1 AAAAATCAGAACACCAAATTAGATTTAAATAATTTGGAATTGACATAAAAAAT-A-CTAGACGAT
* * *
38043777 ATACCTGCGATCCAGTTGTATTAGACTGAATAC-TTGTGTTATGTTGTTATTTTTTGGGCTTCTA
64 ATACCTGCGATCCAGTTGTATTAGACTGAATACATGGCGTTATGTTATTATTTTTT-GGCTTCTA
* *
38043841 GTTCT-TGTACTCATACCAGACTAAGA-CCAA
128 GTT-TGTGTACTCATACCAGAATAAGATCAAA
* *
38043871 AAAAATCA-AA-ATCCAAATTAGATTTTAATAGTTTGGAATTGACAATGAAAAAATA
1 AAAAATCAGAACA-CCAAATTAGATTTAAATAATTTGGAATTGAC-AT-AAAAAATA
38043926 TTTATGATAT
Statistics
Matches: 174, Mismatches: 32, Indels: 16
0.78 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 34 0.20
159 68 0.39
160 69 0.40
161 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (158 bp):
AAAAATCAGAACACCAAATTAGATTTAAATAATTTGGAATTGACATAAAAAATACTAGACGATAT
ACCTGCGATCCAGTTGTATTAGACTGAATACATGGCGTTATGTTATTATTTTTTGGCTTCTAGTT
TGTGTACTCATACCAGAATAAGATCAAA
Found at i:38046362 original size:40 final size:39
Alignment explanation
Indices: 38046316--38046437 Score: 127
Period size: 39 Copynumber: 3.1 Consensus size: 39
38046306 TGACCTTCAA
* *
38046316 CACCCTCATCACCTTTATTGCCAAGCAACCTCACCACCCT
1 CACCCTCACCACCTTTACTGCCAA-CAACCTCACCACCCT
* * * *
38046356 CTCCCTCACCACTTTTACTGCTAACAACTTCACCACCCT
1 CACCCTCACCACCTTTACTGCCAACAACCTCACCACCCT
* ** * * *
38046395 CACCCTCGCCATATTTACTACCAATAACCTCACCACCAT
1 CACCCTCACCACCTTTACTGCCAACAACCTCACCACCCT
38046434 CACC
1 CACC
38046438 ATATTTACTG
Statistics
Matches: 67, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
39 48 0.72
40 19 0.28
ACGTcount: A:0.26, C:0.47, G:0.03, T:0.24
Consensus pattern (39 bp):
CACCCTCACCACCTTTACTGCCAACAACCTCACCACCCT
Found at i:38046442 original size:33 final size:33
Alignment explanation
Indices: 38046403--38046504 Score: 168
Period size: 33 Copynumber: 3.1 Consensus size: 33
38046393 CTCACCCTCG
*
38046403 CCATATTTACTACCAATAACCTCACCACCATCA
1 CCATATTTACTGCCAATAACCTCACCACCATCA
*
38046436 CCATATTTACTGCCAATAACCTCACCACCATCG
1 CCATATTTACTGCCAATAACCTCACCACCATCA
* *
38046469 CCATATTTATTGCCAATAACCTCACCACAATCA
1 CCATATTTACTGCCAATAACCTCACCACCATCA
38046502 CCA
1 CCA
38046505 CCTTCATTAC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.34, C:0.38, G:0.03, T:0.25
Consensus pattern (33 bp):
CCATATTTACTGCCAATAACCTCACCACCATCA
Found at i:38046447 original size:72 final size:66
Alignment explanation
Indices: 38046361--38046505 Score: 166
Period size: 66 Copynumber: 2.1 Consensus size: 66
38046351 ACCCTCTCCC
* *
38046361 TCACCACTTTTACTGCTAACAACTTCACCACCCTCACCCTCGCCATATTTACTACCAATAACCTC
1 TCACCACTTTTACTGCCAACAACCTCACCA--C-CA---TCGCCATATTTACTACCAATAACCTC
*
38046426 ACCACCA
60 ACCACAA
* * *
38046433 TCACCA-TATTTACTGCCAATAACCTCACCACCATCGCCATATTTATTGCCAATAACCTCACCAC
1 TCACCACT-TTTACTGCCAACAACCTCACCACCATCGCCATATTTACTACCAATAACCTCACCAC
38046497 AA
65 AA
38046499 TCACCAC
1 TCACCAC
38046506 CTTCATTACC
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
66 36 0.55
69 2 0.03
70 1 0.02
71 1 0.02
72 25 0.38
ACGTcount: A:0.31, C:0.41, G:0.03, T:0.25
Consensus pattern (66 bp):
TCACCACTTTTACTGCCAACAACCTCACCACCATCGCCATATTTACTACCAATAACCTCACCACA
A
Found at i:38048529 original size:93 final size:93
Alignment explanation
Indices: 38048421--38048591 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
38048411 ACCCCTAAGT
* *
38048421 GAACTCGGACTCAACTCAAAAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
38048486 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
** * *
38048514 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
38048579 CGAGTTCGGATGC
66 CGAGTTCGGATGC
38048592 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAAAAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:38048588 original size:46 final size:46
Alignment explanation
Indices: 38048416--38048588 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
38048406 AATCCACCCC
** * * * *
38048416 TAAGTGAACTCGGACTCAACTCAAAAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
38048462 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
38048510 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
38048555 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
38048589 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:38048607 original size:46 final size:45
Alignment explanation
Indices: 38048464--38048607 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 45
38048454 CGCATCCATA
38048464 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * *
38048511 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
38048557 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
38048603 AGTGA
1 AGTGA
38048608 CATGTCACTT
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 33 0.42
47 31 0.39
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:38053513 original size:40 final size:39
Alignment explanation
Indices: 38053345--38053515 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
38053335 AGAAATTGAA
* *
38053345 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
38053385 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
38053425 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
38053465 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
38053505 TGATATCCGGG
1 TGATATCCGGG
38053516 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:38061467 original size:40 final size:39
Alignment explanation
Indices: 38061372--38061468 Score: 106
Period size: 41 Copynumber: 2.4 Consensus size: 39
38061362 AAATTGAATG
* *
38061372 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAAATTAT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCT--AAGTAT
* * *
38061413 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCT-AGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAAGTA--T
38061453 ATATCCGGGCTAAGAC
1 ATATCCGGGCTAAGAC
38061469 ANCCGATGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
38 3 0.06
40 16 0.33
41 29 0.60
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAAGTAT
Found at i:38067254 original size:29 final size:29
Alignment explanation
Indices: 38067218--38067292 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
38067208 GGTTGAGAGA
* *
38067218 ATGGCACTAAGTGTGCGCGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
38067247 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
38067276 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
38067293 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:38072773 original size:1 final size:1
Alignment explanation
Indices: 38072762--38072824 Score: 72
Period size: 1 Copynumber: 63.0 Consensus size: 1
38072752 GACAGTCATG
* * * * * *
38072762 AAAAGAAAAAAAAAAAAAAAAAAAAAAACAAAAAGAAAAAAAAGACAAGAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
38072825 GAAATCAAAT
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.90, C:0.03, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:38072842 original size:29 final size:30
Alignment explanation
Indices: 38072762--38072828 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
38072752 GACAGTCATG
* * *
38072762 AAAAGAAAAAAAAAAAAAAAAAAAAAAACA
1 AAAAGAAAAAAAAGACAAGAAAAAAAAACA
38072792 AAAAGAAAAAAAAGACAAGAAAAAAAAA-A
1 AAAAGAAAAAAAAGACAAGAAAAAAAAACA
38072821 AAAAGAAA
1 AAAAGAAA
38072829 TCAAATGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.90, C:0.03, G:0.07, T:0.00
Consensus pattern (30 bp):
AAAAGAAAAAAAAGACAAGAAAAAAAAACA
Found at i:38075122 original size:72 final size:72
Alignment explanation
Indices: 38075005--38075759 Score: 1271
Period size: 72 Copynumber: 10.4 Consensus size: 72
38074995 TGATGCTTTT
38075005 ATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
38075069 TAATTTCA
65 TAATTTCA
* *
38075077 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTAAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
38075142 AATTTCA
66 AATTTCA
38075149 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
38075214 ATTTTCG
66 AATTTCA
38075221 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
38075286 TAATTTCA
65 TAATTTCA
38075294 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
38075359 ATTTTCG
66 AATTTCA
38075366 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
38075431 TAATTTCG
65 TAATTTCA
38075439 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
38075504 ATTTTCG
66 AATTTCA
38075511 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
38075576 TAATTTCA
65 TAATTTCA
*
38075584 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
38075649 ACTTTCA
66 AATTTCA
* * ** * * *
38075656 ATTTTTCTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATAAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
38075721 AATTTCA
66 AATTTCA
*
38075728 ATTTCTGTTTGTCAAGAA-TCAGCTCATATTGC
1 ATTTCTGTTT-TCAA-AATTCAACTCATATTGC
38075760 TAGAGGTGGG
Statistics
Matches: 649, Mismatches: 28, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
72 415 0.64
73 232 0.36
74 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (72 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
AATTTCA
Found at i:38075452 original size:217 final size:216
Alignment explanation
Indices: 38075005--38076455 Score: 1614
Period size: 217 Copynumber: 6.9 Consensus size: 216
38074995 TGATGCTTTT
38075005 ATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
38075069 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACAC
65 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
38075134 GTTAAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
130 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
* *
38075199 AAGACACGTTGAGGTATTTTCG
195 AAGACACGTTGAGGTAATTTCA
38075221 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
38075286 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
65 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
* *
38075351 GTTGAGGTATTTTCGATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
130 GTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
*
38075416 CAAGACACGTTGAGGTAATTTCG
194 CAAGACACGTTGAGGTAATTTCA
38075439 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
38075504 ATTTTCGATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 AATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
38075569 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
130 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
* *
38075634 AAGACACATTGAGGTACTTTCA
195 AAGACACGTTGAGGTAATTTCA
* * ** * * *
38075656 ATTTTTCTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATAAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* * * *
38075721 AATTTCAATTTCTGTTTGTCAAGAA-TCAGCTCATATTGCTAG--A-G-G-TG-G-GT--TGA-A
66 AATTTCAATTTCTGTTT-TCAA-AATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
* * * * **
38075775 CCTT---TTAATTTC---TACT-TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
129 CGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
*
38075832 CAAGACACGATGAGGTAATTTCA
194 CAAGACACGTTGAGGTAATTTCA
* * * *
38075855 ATTTCTGTTTGTCAAGAA-TCAGCTCATATTGCGAG--A-G-G-TG-G-GT--TGA-ACCTT---
1 ATTTCTGTTT-TCAA-AATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
* * * ** *
38075906 TTAATTTC---TACT-TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
64 GTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
* *
38075966 CGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA-TCAGCTCATATTGCGAG--A-G-G-TG-G-
129 CGTTGAGGTAATTTCAATTTCTGTTT-TCAA-AATTCAACTCATATTGCGAGAAATGAGTTGAGC
* * * *
38076023 GT--TGA-ACCTT---TTAATTTC-
192 CTCAAGACACGTTGAGGTAATTTCA
* * ** * *
38076041 --TACT-TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* * *
38076102 AATTTCAATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACA
66 AATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
* * * * * ** *
38076167 AGTTGAGGTATTTTTAATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGC
129 CGTTGAGGTAATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGC
*** * *
38076232 CTTGGGACACGCTGAGGTAATTTTA
192 CTCAAGACACGTTGAGGTAATTTCA
* * * * *
38076257 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAG
1 ATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
38076322 GTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
64 GTAATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
* ** **
38076387 CACGTTGAGGTATTTTCAATTTCTACTTTCAAAATAATCAACTCATATTGCGAGAGGTGAGTTGA
127 CACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAT--TCAACTCATATTGCGAGAAATGAGTTGA
38076452 GCCT
190 GCCT
38076456 TGGCTCACGT
Statistics
Matches: 1068, Mismatches: 95, Indels: 138
0.82 0.07 0.11
Matches are distributed among these distances:
181 37 0.03
182 8 0.01
183 6 0.01
184 8 0.01
185 2 0.00
186 4 0.00
187 16 0.01
188 2 0.00
190 10 0.01
191 10 0.01
193 2 0.00
194 16 0.01
195 4 0.00
196 2 0.00
197 8 0.01
198 8 0.01
199 61 0.06
200 54 0.05
201 64 0.06
202 18 0.02
204 7 0.01
205 1 0.00
206 1 0.00
207 5 0.00
208 3 0.00
209 1 0.00
210 1 0.00
211 3 0.00
212 5 0.00
213 1 0.00
214 1 0.00
215 7 0.01
216 10 0.01
217 356 0.33
218 150 0.14
219 5 0.00
220 4 0.00
221 4 0.00
222 163 0.15
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Consensus pattern (216 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
AGACACGTTGAGGTAATTTCA
Found at i:38075773 original size:145 final size:145
Alignment explanation
Indices: 38075005--38075759 Score: 1320
Period size: 145 Copynumber: 5.2 Consensus size: 145
38074995 TGATGCTTTT
38075005 ATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* * *
38075069 TAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACA
65 TATTTTCGATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
38075133 CGTTAAGGTAATTTCA
130 CGTTGAGGTAATTTCA
38075149 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
38075214 ATTTTCGATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCGATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
38075279 GTTGAGGTAATTTCA
131 GTTGAGGTAATTTCA
38075294 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
38075359 ATTTTCGATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCGATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
38075424 GTTGAGGTAATTTCG
131 GTTGAGGTAATTTCA
38075439 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
38075504 ATTTTCGATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCGATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
38075569 GTTGAGGTAATTTCA
131 GTTGAGGTAATTTCA
*
38075584 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* * * ** *
38075649 ACTTTCAATTT-TTCTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
66 ATTTTCGATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
* *
38075713 GATAAGGTAATTTCA
131 GTTGAGGTAATTTCA
*
38075728 ATTTCTGTTTGTCAAGAA-TCAGCTCATATTGC
1 ATTTCTGTTT-TCAA-AATTCAACTCATATTGC
38075760 TAGAGGTGGG
Statistics
Matches: 591, Mismatches: 16, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
144 144 0.24
145 445 0.75
146 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (145 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
ATTTTCGATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
GTTGAGGTAATTTCA
Found at i:38075813 original size:127 final size:127
Alignment explanation
Indices: 38075663--38076155 Score: 862
Period size: 127 Copynumber: 3.9 Consensus size: 127
38075653 TCAATTTTTC
* *
38075663 TTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATAAGGTAATTTCA
1 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCA
*
38075728 ATTTCTGTTTGTCAAGAATCAGCTCATATTGCTAGAGGTGGGTTGAACCTTTTAATTTCTACT
65 ATTTCTGTTTGTCAAGAATCAGCTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACT
*
38075791 TTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGAGGTAATTTCAA
1 TTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAA
38075856 TTTCTGTTTGTCAAGAATCAGCTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACT
66 TTTCTGTTTGTCAAGAATCAGCTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACT
38075918 TTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAA
1 TTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAA
38075983 TTTCTGTTTGTCAAGAATCAGCTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACT
66 TTTCTGTTTGTCAAGAATCAGCTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACT
*
38076045 TTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAA
* * * * *
38076110 TTTCTATTT-TCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
66 TTTCTGTTTGTC--AAGAATCAGCTCATATTGCGAGAGGTGGGTTGA
38076156 GCCTCAAGAC
Statistics
Matches: 352, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
126 2 0.01
127 312 0.89
128 38 0.11
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (127 bp):
TTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAA
TTTCTGTTTGTCAAGAATCAGCTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACT
Found at i:38076174 original size:74 final size:74
Alignment explanation
Indices: 38076050--38076802 Score: 656
Period size: 74 Copynumber: 9.9 Consensus size: 74
38076040 CTACTTTTTC
* *
38076050 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
38076115 ATTTTCAAA
66 ATTTTCAAA
* * * * *
38076124 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACAAGTTGAGGTATTTTTAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
38076189 ATTTTCAAA
66 ATTTTCAAA
* * ** *
38076198 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGGACACGCTGAGGTAATTTTAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
38076263 ATTTTCAAA
66 ATTTTCAAA
* *
38076272 AAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
38076337 GTTTTCAAA
66 ATTTTCAAA
* * * *
38076346 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
38076411 ACTTTCAAA
66 ATTTTCAAA
* * * * * *
38076420 ATAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACG-TGTTGAGTCACTTTCAAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-ACACGCTG-AG-GT-AATTTCAAT
* * *
38076483 TTCTGTTTTTATATCTGCTTTT
62 TTCTATTTTCA-A--------A
* * * * * * *
38076505 TAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTC
1 AAAATCAACTCAT-ATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
*
38076570 TACTTTCAAA
65 TATTTTCAAA
* * * * * * *
38076580 AAAATCAACTCATATTGCAAGAGGAGAGTTGAGCCT-TGGCTCACG-TGTTGAGTCACTTTCAAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-ACACGCTG-AG-GT-AATTTCAAT
****
38076643 TTCTGTTTTTATGTCTGTTTTTT
62 TTC------TA--T-T-TTCAAA
* * * * *
38076666 TAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTGT
1 AAAATCAACTCAT-ATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT-T
*
38076731 -TGTTTGTC--A
64 CTATTT-TCAAA
* * * *
38076740 AAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
38076803 TTGCTTTCCA
Statistics
Matches: 564, Mismatches: 80, Indels: 72
0.79 0.11 0.10
Matches are distributed among these distances:
72 1 0.00
73 53 0.09
74 343 0.61
75 17 0.03
76 28 0.05
77 2 0.00
79 1 0.00
82 2 0.00
83 1 0.00
84 15 0.03
85 23 0.04
86 45 0.08
87 29 0.05
88 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
ATTTTCAAA
Found at i:38076436 original size:222 final size:222
Alignment explanation
Indices: 38076050--38076615 Score: 722
Period size: 222 Copynumber: 2.5 Consensus size: 222
38076040 CTACTTTTTC
* **
38076050 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
38076115 ATTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACAAGTTGAGGTATTT
66 ATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAAGTTGAGGTATTT
* *
38076180 TTAATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGGACACGCT
131 TCAATTTCTACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGGACACGCT
38076245 GAGGTAATTTTAATTTCTATTTTCAAA
196 GAGGTAATTTTAATTTCTATTTTCAAA
*
38076272 AAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* *
38076337 GTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
66 ATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAAGTTGAGGTATTT
* * **
38076402 TCAATTTCTACTTTCAAAATAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG-T
131 TCAATTTCTACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGGACACGCT
* * * * * *
38076466 GTTGAGTCACTTTCAATTTCTGTTTTTATATCTGCTTTT
196 G-AG-GT-AATTTTAATTTCTATTTTCA-A--------A
* ** * * * * *
38076505 TAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTC
1 AAAATCAACTCAT-ATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* * *
38076570 TACTTTCAAAAAAATCAACTCATATTGCAAGAGGA-GAGTTGAGCCT
65 TATTTTCAAAAAAATCAACTCATATTGCGAGA-AATGAGTTGAGCCT
38076616 TGGCTCACGT
Statistics
Matches: 298, Mismatches: 32, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
221 2 0.01
222 181 0.61
223 2 0.01
224 16 0.05
225 1 0.00
233 12 0.04
234 83 0.28
235 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (222 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
ATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAAGTTGAGGTATTT
TCAATTTCTACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGGACACGCT
GAGGTAATTTTAATTTCTATTTTCAAA
Found at i:38076623 original size:160 final size:161
Alignment explanation
Indices: 38076347--38076775 Score: 657
Period size: 160 Copynumber: 2.7 Consensus size: 161
38076337 GTTTTCAAAA
** ** * * *
38076347 AAATCAACTCAT-ATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAAATTCT
*
38076411 ACTTTCAAAATAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCAC
66 ACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCAC
38076476 TTTCAATTTCTGTTTTTATATCTG-CTTTTT
131 TTTCAATTTCTGTTTTTATATCTGTCTTTTT
*
38076506 AAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCT
1 AAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAAATTCT
* *
38076571 ACTTTCAAAAAAATCAACTCATATTGCAAGAGGAGAGTTGAGCCTTGGCTCACGTGTTGAGTCAC
66 ACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCAC
* *
38076636 TTTCAATTTCTGTTTTTATGTCTGTTTTTTT
131 TTTCAATTTCTGTTTTTATATCTGTCTTTTT
*
38076667 AAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC-AATTGT
1 AAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAAATTCT
** *** *
38076731 TGTTTGTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCT
66 ACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
38076776 CAGGGCACGC
Statistics
Matches: 245, Mismatches: 23, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
159 12 0.05
160 171 0.70
161 62 0.25
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (161 bp):
AAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAAATTCT
ACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCAC
TTTCAATTTCTGTTTTTATATCTGTCTTTTT
Found at i:38077042 original size:92 final size:89
Alignment explanation
Indices: 38076844--38077062 Score: 230
Period size: 92 Copynumber: 2.4 Consensus size: 89
38076834 AAAGAAAAAA
* *
38076844 AACTCATATCGCGAAAGGTGAGTTGAGCCTCAGGA-CACACCGAGGTATTGTCAACTTTCATTTC
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATCACACCGAGGTATTGTCAACTTTCATTTC
** *
38076908 TTAATTTATGTTTTTCCAAAAATT
66 TTAATTTATACTTTTCCAAAAATC
* * * * **
38076932 AATTCATATTGCTAGAGGTGAATTGAGCCTCAGGATCACACGCCGAGGTATTTTCAA-TTAATGT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATCACA--CCGAGGTATTGTCAACTT--TCA
* *
38076996 TTTTTTCAATTTATACTTTT-CAAGAATC
62 TTTCTT-AATTTATACTTTTCCAAAAATC
* *
38077024 AACTCATATTACGAGAGGTGAGTTGAGCCTC-GGGTCACA
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATCACA
38077063 TGCTGAGTTT
Statistics
Matches: 107, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
88 30 0.28
89 4 0.04
90 2 0.02
91 21 0.20
92 39 0.36
93 11 0.10
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (89 bp):
AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATCACACCGAGGTATTGTCAACTTTCATTTC
TTAATTTATACTTTTCCAAAAATC
Found at i:38078608 original size:3 final size:3
Alignment explanation
Indices: 38078600--38078680 Score: 162
Period size: 3 Copynumber: 27.0 Consensus size: 3
38078590 GTTATTTTCA
38078600 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
38078648 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
38078681 GTGCTTTTGT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 78 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Done.