Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 16 of 427
Found at i:4496259 original size:25 final size:26
Alignment explanation
Indices: 4496225--4496332 Score: 184
Period size: 25 Copynumber: 4.2 Consensus size: 26
4496215 CATGAAATTC
4496225 TTATCATGAAACATTTACCTAACC-A
1 TTATCATGAAACATTTACCTAACCTA
*
4496250 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
4496276 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
4496302 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
4496327 TTATCA
1 TTATCA
4496333 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
25 47 0.59
26 33 0.41
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:4496314 original size:51 final size:51
Alignment explanation
Indices: 4496225--4496332 Score: 182
Period size: 51 Copynumber: 2.1 Consensus size: 51
4496215 CATGAAATTC
4496225 TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
* *
4496276 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-ATTATCATGAAACATTTACCTAACCCA
4496327 TTATCA
1 TTATCA
4496333 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
51 45 0.83
52 9 0.17
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (51 bp):
TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
Found at i:4500302 original size:136 final size:137
Alignment explanation
Indices: 4500058--4500343 Score: 547
Period size: 136 Copynumber: 2.1 Consensus size: 137
4500048 TATTGGGCCT
**
4500058 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
4500123 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
4500187 CATATGC
131 CATATGC
4500194 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
4500259 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
4500324 CATATGC
131 CATATGC
4500331 AAGCCCATTTGGG
1 AAGCCCATTTGGG
4500344 GAGACTACTC
Statistics
Matches: 147, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
136 125 0.85
137 22 0.15
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:4500627 original size:25 final size:27
Alignment explanation
Indices: 4500590--4500642 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
4500580 TCAAACATGC
4500590 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
4500616 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
4500642 A
1 A
4500643 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:4502158 original size:26 final size:26
Alignment explanation
Indices: 4502122--4502229 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
4502112 CATGAAATTC
4502122 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
4502148 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
4502174 TTATCATGGAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
*
4502199 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
4502224 TTATCA
1 TTATCA
4502230 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
24 13 0.16
25 19 0.24
26 47 0.59
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:4502250 original size:51 final size:50
Alignment explanation
Indices: 4502122--4502229 Score: 164
Period size: 50 Copynumber: 2.1 Consensus size: 50
4502112 CATGAAATTC
*
4502122 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTA-CTAA-CCATTATCATGAAACATTTACCTAACCCA
*
4502174 TTATCATGGAACATTTACCTAACCATTATCATG-AACATTTACCTAACCTA
1 TTATCATGGAACATTTA-CTAACCATTATCATGAAACATTTACCTAACCCA
4502224 TTATCA
1 TTATCA
4502230 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
50 22 0.41
51 11 0.20
52 21 0.39
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (50 bp):
TTATCATGGAACATTTACTAACCATTATCATGAAACATTTACCTAACCCA
Found at i:4512259 original size:3 final size:3
Alignment explanation
Indices: 4512251--4512286 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
4512241 ATATATGCAT
4512251 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4512287 TCTACCATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:4512401 original size:37 final size:37
Alignment explanation
Indices: 4512330--4512401 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
4512320 AAAAATATAT
* *
4512330 ATATAAAATATTTATAATAATGATGTAAATAAACAAC
1 ATATAAAATATTTATAATAATCATATAAATAAACAAC
4512367 ATATAAAATATTTGA-AATAA-CATATAAATGAAACA
1 ATATAAAATATTT-ATAATAATCATATAAAT-AAACA
4512402 TTTAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 7 0.23
37 23 0.74
38 1 0.03
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (37 bp):
ATATAAAATATTTATAATAATCATATAAATAAACAAC
Found at i:4512991 original size:22 final size:23
Alignment explanation
Indices: 4512936--4512988 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
4512926 AAGAAAAGGA
4512936 AAAAAAAACAATGAATAAATATG
1 AAAAAAAACAATGAATAAATATG
4512959 AAAAAAAACAATGAATAAATATG
1 AAAAAAAACAATGAATAAATATG
4512982 AAAAAAA
1 AAAAAAA
4512989 CAAGGTAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.74, C:0.04, G:0.08, T:0.15
Consensus pattern (23 bp):
AAAAAAAACAATGAATAAATATG
Found at i:4516085 original size:26 final size:26
Alignment explanation
Indices: 4516048--4516183 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
4516038 TGATACAAAT
* *
4516048 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
4516074 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* * *
4516100 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
4516126 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
4516152 TGATAATGGGTTAGGAAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
4516178 TGATAA
1 TGATAA
4516184 GTGTAGCGAC
Statistics
Matches: 101, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 101 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:4516862 original size:3 final size:3
Alignment explanation
Indices: 4516854--4516917 Score: 53
Period size: 3 Copynumber: 20.7 Consensus size: 3
4516844 ATATATTTGG
*
4516854 TAA TAA TAA T-A TAA -AA TAA TAA TATA TATA TATA TAA -AA GTATG
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TA-A TAA TAA -TA-A
4516898 TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
4516918 TCTACAATAA
Statistics
Matches: 53, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
2 6 0.11
3 33 0.62
4 14 0.26
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:4517771 original size:16 final size:16
Alignment explanation
Indices: 4517752--4517786 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
4517742 TTTTGGTAGG
4517752 TTTTTCTTT-TTCTTTT
1 TTTTTCTTTGTT-TTTT
4517768 TTTTTCTTTGTTTTTT
1 TTTTTCTTTGTTTTTT
4517784 TTT
1 TTT
4517787 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.89
Consensus pattern (16 bp):
TTTTTCTTTGTTTTTT
Found at i:4518536 original size:88 final size:83
Alignment explanation
Indices: 4518429--4519006 Score: 299
Period size: 88 Copynumber: 7.0 Consensus size: 83
4518419 AACAGACATT
** * *
4518429 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
4518494 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * ** *
4518517 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
*
4518581 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
4518600 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
4518661 ATGAGTTGAATTTTTTTG-AAAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * *
4518683 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
4518748 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * * *
4518771 AAAAACAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
4518836 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** *** * *
4518854 --ATA-A-ATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
4518914 GTTGATTTTTTTG--AAA--G
64 GTTGA-TTTTTTGAAAAACTG
* * * * * * *
4518931 ATAGA-A-A--TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
4518992 TTGATTTTTTGAAAA
65 TTGATTTTTTGAAAA
4519007 CAGAAATTGA
Statistics
Matches: 384, Mismatches: 69, Indels: 84
0.72 0.13 0.16
Matches are distributed among these distances:
76 9 0.02
77 47 0.12
78 2 0.01
79 64 0.17
80 3 0.01
81 11 0.03
82 38 0.10
83 14 0.04
84 41 0.11
85 9 0.02
86 6 0.02
87 19 0.05
88 115 0.30
90 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:4518633 original size:30 final size:30
Alignment explanation
Indices: 4518597--4518658 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
4518587 TTTTGAAAAA
4518597 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
4518627 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
4518657 CA
1 CA
4518659 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:4518777 original size:14 final size:14
Alignment explanation
Indices: 4518754--4518788 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
4518744 TGAGTTGATT
4518754 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
4518767 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
4518781 TTTGAAAA
1 TTTGAAAA
4518789 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:4519089 original size:72 final size:73
Alignment explanation
Indices: 4518806--4519336 Score: 395
Period size: 72 Copynumber: 6.8 Consensus size: 73
4518796 ACATGTAACC
* * * *
4518806 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
4518871 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
4518884 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
4518949 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
4518962 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
4519027 ACGTGTCT
66 GCGTGTCT
* ** * * *
4519035 TGAGGCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
4519099 GCGTGTCC
66 GCGTGTCT
*
4519107 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTTGAAATGCAGAAATTGAAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-------TTTTTTGAAA-ACAGAAATTG---
** ** *
4519172 AATGGAAATTGAAAATACCTCGACGTGTGAT
55 -A---AAA-T--ACCT-CAGC---GTGT-CT
* * *
4519203 CTGAGGCTCAACTCA-CTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
4519267 CAGCGTGTC-
64 CAGCGTGTCT
* *
4519276 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
4519337 ACGGAAATTG
Statistics
Matches: 364, Mismatches: 56, Indels: 69
0.74 0.11 0.14
Matches are distributed among these distances:
72 65 0.18
73 44 0.12
74 27 0.07
75 36 0.10
76 10 0.03
77 41 0.11
78 7 0.02
79 51 0.14
80 8 0.02
81 10 0.03
82 2 0.01
85 2 0.01
88 2 0.01
89 10 0.03
90 9 0.02
91 2 0.01
92 2 0.01
95 4 0.01
96 19 0.05
97 13 0.04
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:4519317 original size:75 final size:74
Alignment explanation
Indices: 4519176--4519336 Score: 211
Period size: 75 Copynumber: 2.1 Consensus size: 74
4519166 TTGAAAAATG
*
4519176 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACTCTCGCAATACGAGTTGACTTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACTCTCGCAATACGAGTTGACTTT
4519241 TTTGACAACA
65 TTTGACAACA
* * *
4519251 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCA-CTCTCGCAATACGAGTTGACTT
4519314 TTTTGA-AAGGCA
64 TTTTGACAA--CA
*
4519326 AAAATTGAAAA
1 GAAATTGAAAA
4519337 ACGGAAATTG
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
73 17 0.22
74 27 0.36
75 32 0.42
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (74 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACTCTCGCAATACGAGTTGACTTTT
TTGACAACA
Found at i:4519408 original size:164 final size:165
Alignment explanation
Indices: 4519003--4519643 Score: 1015
Period size: 164 Copynumber: 3.9 Consensus size: 165
4518993 TGATTTTTTG
* * * ** * *
4519003 AAAACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCACAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
4519066 TGA--ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
66 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
* *
4519129 AATATGAGTTGATTTTTTTTTTTTTGAAATGCAGAAATTGA
131 AATATGAGTTGA------TTTTTTTGAAAGGCAAAAATTGA
* *
4519170 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCA-CTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
4519234 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
4519299 AATATGAGTTGATTTTTTTGAAAGGCAAAAATTGA
131 AATATGAGTTGATTTTTTTGAAAGGCAAAAATTGA
*
4519334 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
4519399 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
4519463 AATATGAGTTGATTTTTTTGAAAGGCAAAAATTGA
131 AATATGAGTTGATTTTTTTGAAAGGCAAAAATTGA
* * *
4519498 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
*
4519563 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
4519628 AATATGAGTTGATTTT
131 AATATGAGTTGATTTT
4519644 GAAAAAGTAG
Statistics
Matches: 450, Mismatches: 18, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
164 228 0.51
165 96 0.21
167 27 0.06
168 16 0.04
169 14 0.03
170 69 0.15
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29
Consensus pattern (165 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTGAAAGGCAAAAATTGA
Found at i:4519417 original size:406 final size:399
Alignment explanation
Indices: 4518429--4519479 Score: 1025
Period size: 406 Copynumber: 2.6 Consensus size: 399
4518419 AACAGACATT
* * *
4518429 AAAAACAGAAATTG-AAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATG
1 AAAAACAGAAATTGAAAAATACCTCAGCGTGT-A-CCTGAGGCTCAACTCACCTCTCGCAATATG
* * ** ***
4518492 AGTTGA-TTTTTTGAAA-CTTAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGG
64 AGTTGATTTTTTTGAAAGC--AAATTGAAAAAC-GAAATTGAAAATACCTCGGCGTGTGACCT-G
* * *
4518554 AGGTTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAAAGACTCAACT
125 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACAGAAATTGAAA-A-T-ACCT
* * *
4518618 CAAC-TCTCGCAGAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAA
186 CAACGTGT--C-----TT--GAGGCTCAACTCACCTCTCGCAATATGAGTTGAA---TTTTG---
* * *
4518682 AAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGA
236 -AAAAACAGAAATTGAAAATACCTCAG-ACGTGACCCAAGGCTCAACTCACCTCTCGCAATATGA
* **
4518747 GTTGATTTTTGAAAACAGAATTTGAAAAACAGATTTTGAAAATACCTCGACATGTAACCCGAGGC
299 GTTGATTTTTGAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCGACATGTAACCCGAGGC
** *
4518812 TCAACTCACATCTCGCAATGTGAGTTGATTTTTTTG
364 TCAACTCACATCTCGCAATACGAGTTGACTTTTTTG
* * * * *
4518848 AAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATG
1 AAAAACAGAAATTG-AAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATATG
* * ** *
4518913 AGTTGATTTTTTTGAAAG---A-T-----A-GAAATTGAAAATAGCTCAGCGCATGAGCC-AAGG
64 AGTTGATTTTTTTGAAAGCAAATTGAAAAACGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGG
* *
4518967 GTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAACGTG
128 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAACGTG
** * *
4519032 TCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTG-AAAACAGAAATTGAAATTACC
193 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAACAGAAATTGAAAATACC
* * *
4519096 TCAG-CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTTGAAATG
258 TCAGACGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--------TTTTTGAAA-A
** * * * *
4519160 CAGAAATTGAAAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCAC-TCTCG
314 CAGAAATTGAAAAACAGAAATTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCG
4519224 CAATACGAGTTGACTTTTTTG
379 CAATACGAGTTGACTTTTTTG
* *
4519245 -ACAACAGAAATTG-AAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATATGAG
4519307 TTGATTTTTTTGAAAGGCAAAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAG
66 TTGATTTTTTTGAAA-GC--AAATTGAAAAAC-GAAATTGAAAATACCTCGGCGTGTGACCTGAG
* * * *
4519372 GCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGT
127 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAACGT
* *
4519437 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
192 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
4519480 TTGAAAGGCA
Statistics
Matches: 527, Mismatches: 72, Indels: 79
0.78 0.11 0.12
Matches are distributed among these distances:
389 37 0.07
391 23 0.04
392 45 0.09
393 1 0.00
394 15 0.03
396 15 0.03
397 32 0.06
398 51 0.10
399 30 0.06
401 2 0.00
404 1 0.00
405 2 0.00
406 122 0.23
407 7 0.01
408 3 0.01
409 1 0.00
410 62 0.12
411 6 0.01
412 1 0.00
417 1 0.00
419 12 0.02
420 1 0.00
421 47 0.09
422 10 0.02
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (399 bp):
AAAAACAGAAATTGAAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAGCAAATTGAAAAACGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTC
AACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCT
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAACAGAAATTGAAAATACCTCA
GACGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAA
AACAGAAATTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATACGAGTTG
ACTTTTTTG
Found at i:4519421 original size:89 final size:88
Alignment explanation
Indices: 4519251--4519424 Score: 262
Period size: 91 Copynumber: 2.0 Consensus size: 88
4519241 TTTGACAACA
* *
4519251 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
4519316 TTGAAAGGCAAAAATTGAAAAACG
66 TTGAAA-GCAAAAATTGAAAAACG
*
4519340 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
*
4519404 TTTTGACAA-CAGAAATTGAAA
64 TTTTGA-AAGCAAAAATTGAAA
4519425 TTACCTCAGC
Statistics
Matches: 78, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
89 33 0.42
90 8 0.10
91 37 0.47
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (88 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TTGAAAGCAAAAATTGAAAAACG
Found at i:4519481 original size:75 final size:74
Alignment explanation
Indices: 4519340--4519480 Score: 239
Period size: 73 Copynumber: 1.9 Consensus size: 74
4519330 TTGAAAAACG
*
4519340 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
4519405 TTTGACAACA
65 TTTGACAACA
* *
4519415 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
4519479 TT
66 TT
4519481 TGAAAGGCAA
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
73 41 0.65
75 22 0.35
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (74 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
TTGACAACA
Found at i:4519495 original size:75 final size:74
Alignment explanation
Indices: 4519341--4519500 Score: 234
Period size: 73 Copynumber: 2.1 Consensus size: 74
4519331 TGAAAAACGG
*
4519341 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
*
4519406 TTGACAACAG
65 TTGACAACAA
* *
4519416 AAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TTTT
4519480 TTGA-AAGGCAA
65 TTGACAA--CAA
4519491 AAATTGAAAA
1 AAATTGAAAA
4519501 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
73 37 0.48
74 8 0.10
75 32 0.42
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (74 bp):
AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TGACAACAA
Found at i:4519612 original size:329 final size:326
Alignment explanation
Indices: 4519003--4519643 Score: 1023
Period size: 329 Copynumber: 1.9 Consensus size: 326
4518993 TGATTTTTTG
* ** *
4519003 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAATACGAGTTG
4519068 AATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
66 AATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
* * *
4519133 TGAGTTGATTTTTTTTTTTTTGAAATGCAGAAATTGAAAAATGGAAATTGAAAATACCTCGACGT
131 TGAGTTGA-----TTTTTTTTGAAAGGCAAAAATTGAAAAACGGAAATTGAAAATACCTCGACGT
* *
4519198 GTGATCTGAGGCTCAACTCACTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATT
191 GTGACCTGAGGCTCAACTCACACTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATT
4519263 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAA
256 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAA
4519328 AATTGA
321 AATTGA
* ** *
4519334 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCACAATACGAGT
* * *
4519399 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
64 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
*
4519464 ATATGAGTTGA-TTTTTTTGAAAGGCAAAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGT
128 ATATGAGTTGATTTTTTTTGAAAGGCAAAAATTGAAAAACGGAAATTGAAAATACCTCGACGTGT
* *
4519528 GACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTA
193 GACCTGAGGCTCAACTC-ACACTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTA
4519593 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
257 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
4519644 GAAAAAGTAG
Statistics
Matches: 287, Mismatches: 19, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
328 65 0.23
329 95 0.33
331 27 0.09
333 31 0.11
334 69 0.24
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29
Consensus pattern (326 bp):
AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAATACGAGTTG
AATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTTTTGAAAGGCAAAAATTGAAAAACGGAAATTGAAAATACCTCGACGTGTGAC
CTGAGGCTCAACTCACACTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCTC
AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTG
A
Found at i:4519629 original size:74 final size:75
Alignment explanation
Indices: 4519504--4519643 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 75
4519494 TTGAAAAACG
* *
4519504 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
4519569 TTTTGACAACA
65 TTTTGACAACA
* * *
4519580 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
4519644 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:4519842 original size:72 final size:71
Alignment explanation
Indices: 4519708--4519873 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
4519698 TGAACAACGT
* * * *
4519708 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
4519773 GAGTTG
66 GAGTTG
*
4519779 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
4519844 TGAGTTG
65 TGAGTTG
**
4519851 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
4519874 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:4520016 original size:71 final size:71
Alignment explanation
Indices: 4519873--4520136 Score: 356
Period size: 70 Copynumber: 3.7 Consensus size: 71
4519863 AAAAATTAAA
* * * * *
4519873 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
4519936 GCCCCG
66 GCCCCG
* *
4519942 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
4520007 GTCTTG
66 GCCCCG
* * *
4520013 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
4520076 TGCCCCG
65 TGCCCCG
*
4520083 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
4520137 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 31 0.19
70 61 0.37
71 58 0.35
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:4520094 original size:70 final size:69
Alignment explanation
Indices: 4519873--4520136 Score: 339
Period size: 71 Copynumber: 3.7 Consensus size: 69
4519863 AAAAATTAAA
* ** * * *
4519873 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
4519938 CCCG
66 CCCG
* * *
4519942 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
4520007 GTCTTG
64 GCCCCG
* *
4520013 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
4520078 CCCCG
65 CCCCG
*
4520083 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-AAAAACAAAAATTAAAA
4520137 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 33 0.20
70 56 0.34
71 60 0.36
72 14 0.08
73 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
CCCG
Found at i:4520119 original size:263 final size:257
Alignment explanation
Indices: 4519711--4520303 Score: 1042
Period size: 257 Copynumber: 2.3 Consensus size: 257
4519701 ACAACGTAAA
* * * * * *
4519711 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
4519776 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
4519841 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
129 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
4519906 TTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
194 TT-----A-AAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
4519971 TGATT
253 TGATT
4519976 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
4520041 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
4520106 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
131 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
4520171 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
196 AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
4520233 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
4520298 TTGATT
66 TTGATT
4520304 TTCCTTGAAA
Statistics
Matches: 320, Mismatches: 8, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
257 130 0.41
258 1 0.00
263 127 0.40
265 62 0.19
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (257 bp):
TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:4529608 original size:16 final size:15
Alignment explanation
Indices: 4529589--4529624 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
4529579 TTTTGGTAGG
*
4529589 TTTTTCTTTTTCTTTT
1 TTTTTCTTTGT-TTTT
4529605 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
4529620 TTTTT
1 TTTTT
4529625 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:4531286 original size:26 final size:26
Alignment explanation
Indices: 4531257--4531309 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4531247 TTTACAATTT
4531257 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
4531283 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
4531309 T
1 T
4531310 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:4531695 original size:33 final size:34
Alignment explanation
Indices: 4531618--4531698 Score: 85
Period size: 32 Copynumber: 2.4 Consensus size: 34
4531608 TATGGGCCAT
**
4531618 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTCC
* * **
4531652 ATTGTAATCTGAA-AA-GGGCTCTGGCCCAGTACC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-CC
4531685 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
4531699 GGGCTTAGGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 13 0.35
33 13 0.35
34 11 0.30
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTCC
Found at i:4533738 original size:3 final size:3
Alignment explanation
Indices: 4533631--4533729 Score: 53
Period size: 3 Copynumber: 33.3 Consensus size: 3
4533621 TTCATGTATA
* * * *
4533631 TAT TA- TAT TGT TGT TAT TAT TAT TAT TAT TA- AAT T-T TCT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
4533676 TAC TAT TAT TTT TAT TCCT T-T TAT TAT TGTT TAT TAT CAA TATT TAT
1 TAT TAT TAT TAT TAT T-AT TAT TAT TAT T-AT TAT TAT TAT TA-T TAT
4533723 TAT TAT T
1 TAT TAT T
4533730 GCTATTATTG
Statistics
Matches: 73, Mismatches: 16, Indels: 14
0.71 0.16 0.14
Matches are distributed among these distances:
2 7 0.10
3 60 0.82
4 6 0.08
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:4533807 original size:13 final size:14
Alignment explanation
Indices: 4533789--4533817 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
4533779 TTTCTCTCTT
4533789 TATTTTATGT-TTA
1 TATTTTATGTATTA
4533802 TATTTTATGTATTA
1 TATTTTATGTATTA
4533816 TA
1 TA
4533818 CCTATCTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.66
Consensus pattern (14 bp):
TATTTTATGTATTA
Found at i:4534027 original size:22 final size:22
Alignment explanation
Indices: 4534002--4534043 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
4533992 TAACGTGCTA
* *
4534002 TTATTACTATTATTTTTATTTT
1 TTATTACCATTATTGTTATTTT
4534024 TTATTACCATTATTGTTATT
1 TTATTACCATTATTGTTATT
4534044 GTAATTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (22 bp):
TTATTACCATTATTGTTATTTT
Found at i:4546725 original size:86 final size:86
Alignment explanation
Indices: 4546533--4546743 Score: 237
Period size: 86 Copynumber: 2.4 Consensus size: 86
4546523 TTCAAACCAC
* * * * ***
4546533 CAAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATATTATTGCCCTAAGCA
1 CAAGCCTTAACCCCCTAAGCAGTAGGGTAACAAGTTG-AGTTTACAGATACTAAACCCCTAAGCA
* **
4546598 ATAGGGTAACAAACCAAATTTT
65 ATAGGGAAACAAACCAAATTGA
* * * *
4546620 CAAACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAGTTTACAGAT-CTAAACCCCTAAGCAG
1 CAAGCCTTAACCCCCTAAGCAGTAGGGTAACAAGTTGAGTTTACAGATACTAAACCCCTAAGCAA
* *
4546684 TAGGGAAACAGATC-AATGATGA
66 TAGGGAAACAAACCAAAT--TGA
4546706 CAAGCCTTAACCCCCTAAGCAGTAGGGTAACAAGTTGA
1 CAAGCCTTAACCCCCTAAGCAGTAGGGTAACAAGTTGA
4546744 AAATCAAATA
Statistics
Matches: 103, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
84 3 0.03
85 22 0.21
86 46 0.45
87 32 0.31
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.22
Consensus pattern (86 bp):
CAAGCCTTAACCCCCTAAGCAGTAGGGTAACAAGTTGAGTTTACAGATACTAAACCCCTAAGCAA
TAGGGAAACAAACCAAATTGA
Found at i:4547597 original size:11 final size:10
Alignment explanation
Indices: 4547578--4547607 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
4547568 ATATTAGATT
4547578 ATATCAAAAAA
1 ATAT-AAAAAA
4547589 ATATAAAAAA
1 ATATAAAAAA
4547599 ATATAAAAA
1 ATATAAAAA
4547608 GAAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.79
11 4 0.21
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (10 bp):
ATATAAAAAA
Found at i:4548134 original size:12 final size:12
Alignment explanation
Indices: 4548119--4548166 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
4548109 TATTTCTCTC
4548119 TTTATATTTATG
1 TTTATATTTATG
4548131 TTTATATTTTATG
1 TTTATA-TTTATG
** *
4548144 TATTATACCTATC
1 T-TTATATTTATG
4548157 TTTATATTTA
1 TTTATATTTA
4548167 CGCATGAACA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
12 13 0.45
13 11 0.38
14 5 0.17
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (12 bp):
TTTATATTTATG
Found at i:4548360 original size:21 final size:22
Alignment explanation
Indices: 4548336--4548376 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
4548326 TAACGTGCTA
*
4548336 TTATTACTATTATT-TTATTTT
1 TTATTACCATTATTGTTATTTT
4548357 TTATTACCATTATTGTTATT
1 TTATTACCATTATTGTTATT
4548377 GTAATTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.66
Consensus pattern (22 bp):
TTATTACCATTATTGTTATTTT
Found at i:4551288 original size:22 final size:22
Alignment explanation
Indices: 4551263--4551304 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
4551253 ATATAAGTAC
* *
4551263 AATAACAATAATGGTAATAAAA
1 AATAAAAATAATAGTAATAAAA
4551285 AATAAAAATAATAGTAATAA
1 AATAAAAATAATAGTAATAA
4551305 TAGTACGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (22 bp):
AATAAAAATAATAGTAATAAAA
Found at i:4551505 original size:14 final size:12
Alignment explanation
Indices: 4551471--4551518 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
4551461 TGTTCATGCG
*
4551471 TAAATATAAAGA
1 TAAATATAAACA
*
4551483 TAGATATAATACA
1 TAAATATAA-ACA
4551496 TAAAATATAAACA
1 T-AAATATAAACA
4551509 TAAATATAAA
1 TAAATATAAA
4551519 GAGATAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
12 17 0.55
13 7 0.23
14 7 0.23
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (12 bp):
TAAATATAAACA
Found at i:4551527 original size:26 final size:25
Alignment explanation
Indices: 4551471--4551528 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
4551461 TGTTCATGCG
* * *
4551471 TAAATATAAAGATAGATATAATACA
1 TAAATATAAACATAAATATAAGACA
*
4551496 TAAAATATAAACATAAATATAAAGAGA
1 T-AAATATAAACATAAATAT-AAGACA
4551523 TAAATA
1 TAAATA
4551529 AAATTAGATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.04
26 21 0.78
27 5 0.19
ACGTcount: A:0.64, C:0.03, G:0.07, T:0.26
Consensus pattern (25 bp):
TAAATATAAACATAAATATAAGACA
Found at i:4552794 original size:26 final size:26
Alignment explanation
Indices: 4552732--4552839 Score: 175
Period size: 25 Copynumber: 4.2 Consensus size: 26
4552722 TGATACAAAT
4552732 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
4552757 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
4552783 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
4552809 TGATAAT-GGTTATGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
4552834 TGATAA
1 TGATAA
4552840 GAATTTCATG
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 44 0.56
26 34 0.44
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:4552795 original size:51 final size:51
Alignment explanation
Indices: 4552732--4552839 Score: 173
Period size: 51 Copynumber: 2.1 Consensus size: 51
4552722 TGATACAAAT
4552732 TGATAATAGGTTAGGTAAATG-TTCATGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAAT-GGTTAGGTAAATGTTCCA
* * *
4552783 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGTTATGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAATGGTTAGGTAAATGTTCCA
4552834 TGATAA
1 TGATAA
4552840 GAATTTCATG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
51 42 0.79
52 11 0.21
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (51 bp):
TGATAATAGGTTAGGTAAATGTTTCATGATAATGGTTAGGTAAATGTTCCA
Found at i:4554496 original size:27 final size:27
Alignment explanation
Indices: 4554455--4554567 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
4554445 GAGGAAGCGT
*
4554455 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
4554482 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
4554509 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
4554537 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
4554563 TCTGG
1 TCTGG
4554568 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:4554560 original size:54 final size:54
Alignment explanation
Indices: 4554453--4554567 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
4554443 TGGAGGAAGC
*
4554453 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
4554507 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
4554561 GTTCTGG
1 GTTCTGG
4554568 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:4554653 original size:19 final size:22
Alignment explanation
Indices: 4554629--4554668 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
4554619 CTCCCCACAC
4554629 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
4554648 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
4554669 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:4558563 original size:26 final size:26
Alignment explanation
Indices: 4558527--4558636 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
4558517 TGATACAAAT
4558527 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
4558553 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
4558579 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
4558605 TGATAAT-GGTTTATGTAAATGTTTCA
1 TGATAATAGG-TTAGGTAAATGTTCCA
4558631 TGATAA
1 TGATAA
4558637 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 2 0.03
26 78 0.98
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:4558612 original size:13 final size:13
Alignment explanation
Indices: 4558596--4558636 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
4558586 GGGTTAGGTA
4558596 AATGTTTCATGAT
1 AATGTTTCATGAT
4558609 AATGGTTT-ATG-T
1 AAT-GTTTCATGAT
4558621 AAATGTTTCATGAT
1 -AATGTTTCATGAT
4558635 AA
1 AA
4558637 GAATTTCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
12 5 0.21
13 14 0.58
14 5 0.21
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.44
Consensus pattern (13 bp):
AATGTTTCATGAT
Found at i:4560296 original size:27 final size:27
Alignment explanation
Indices: 4560255--4560367 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
4560245 GAGGAAGCGT
*
4560255 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
4560282 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
4560309 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
4560337 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
4560363 TCTGG
1 TCTGG
4560368 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:4560360 original size:54 final size:54
Alignment explanation
Indices: 4560253--4560367 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
4560243 TGGAGGAAGC
*
4560253 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
4560307 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
4560361 GTTCTGG
1 GTTCTGG
4560368 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:4561334 original size:25 final size:25
Alignment explanation
Indices: 4561267--4561371 Score: 142
Period size: 25 Copynumber: 4.2 Consensus size: 25
4561257 TCAAATAGTA
*
4561267 TCATAATAATGGTTAGGT-AATG-T
1 TCATGATAATGGTTAGGTAAATGTT
4561290 TCATGATAATAGGTTAAGGTAAATGTT
1 TCATGATAAT-GGTT-AGGTAAATGTT
* *
4561317 CCATGATAATGGTTAGGTAAATATT
1 TCATGATAATGGTTAGGTAAATGTT
*
4561342 TCATGATAATGGGTAGGTAAATGTT
1 TCATGATAATGGTTAGGTAAATGTT
4561367 TCATG
1 TCATG
4561372 TAAAGAATTC
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
23 9 0.12
24 4 0.06
25 41 0.57
26 8 0.11
27 10 0.14
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (25 bp):
TCATGATAATGGTTAGGTAAATGTT
Found at i:4563018 original size:22 final size:22
Alignment explanation
Indices: 4562977--4563018 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
4562967 CATGTTTGAC
*
4562977 TGTTGTTATTTACTGCATGCCA
1 TGTTGTTATATACTGCATGCCA
4562999 TGTTGTTATATATCTG-ATGC
1 TGTTGTTATATA-CTGCATGC
4563019 ATGGGATTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.48
Consensus pattern (22 bp):
TGTTGTTATATACTGCATGCCA
Found at i:4563489 original size:135 final size:136
Alignment explanation
Indices: 4563210--4563482 Score: 466
Period size: 135 Copynumber: 2.0 Consensus size: 136
4563200 GAGTAGTCTC
*
4563210 CCCAAATGGGCTTGCATATATTTACTGATGTTGCATGTATTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATAGTTACTGATGTTGCATGTATTTGAAATGGGCCTATGGGCCATACT
4563275 GTTATCTGAAATAAGGGGCTAAGGCCCAGTTTATGTAATCTGAAAAGGGACTCTGCCCTAGTACA
66 GTTATCTGAAATAAGGGGCTAAGGCCCAGTTTATGTAATCTGAAAAGGGACTCTGCCCTAGTACA
4563340 CTGTTA
131 CTGTTA
4563346 CCCAAATGGGCTTGCATAT-GTTA-TGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATAGTTACTGATGTTGCATGTA-TTTGAAATGGGCCTATGGGCCATAC
4563409 TGTTATCTG-AATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGG-CTCTGGCCCT-GT
65 TGTTATCTGAAATAAGGGGCTAAGGCCCAGTTTA-TGTAATCTGAAAAGGGACTCT-GCCCTAGT
4563471 ACCACTGTTA
128 A-CACTGTTA
4563481 CC
1 CC
4563483 TGAATGGCTT
Statistics
Matches: 132, Mismatches: 1, Indels: 9
0.93 0.01 0.06
Matches are distributed among these distances:
134 45 0.34
135 68 0.52
136 19 0.14
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATAGTTACTGATGTTGCATGTATTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAAATAAGGGGCTAAGGCCCAGTTTATGTAATCTGAAAAGGGACTCTGCCCTAGTACA
CTGTTA
Found at i:4570048 original size:64 final size:64
Alignment explanation
Indices: 4569975--4570185 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
4569965 CTGGGCCAGA
*
4569975 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
4570039 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
4570101 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
4570112 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
4570176 GCCCATTTCA
1 GCCCATTTCA
4570186 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:4570149 original size:137 final size:135
Alignment explanation
Indices: 4569941--4570225 Score: 534
Period size: 137 Copynumber: 2.1 Consensus size: 135
4569931 TATTGGGCCT
**
4569941 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
4570006 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCA--AAA
4570071 CATATGC
129 CATATGC
4570078 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
4570143 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAAACA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAAACA
4570208 TATGC
131 TATGC
4570213 AAGCCCATTTGGG
1 AAGCCCATTTGGG
4570226 GAGACTACTC
Statistics
Matches: 146, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
135 23 0.16
137 123 0.84
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (135 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAAACA
TATGC
Found at i:4572042 original size:26 final size:26
Alignment explanation
Indices: 4572006--4572140 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
4571996 ACATGAATTC
4572006 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
4572032 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4572058 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
4572084 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4572109 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
4572135 TTATCA
1 TTATCA
4572141 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 23 0.23
26 79 0.77
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:4576142 original size:135 final size:137
Alignment explanation
Indices: 4575899--4576183 Score: 520
Period size: 135 Copynumber: 2.1 Consensus size: 137
4575889 CATTGGGCCT
** *
4575899 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
4575964 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
4576028 CATATGC
131 CATATGC
4576035 AAGCCCATTTGGGTAACAGTGATACTGGGCCA-AGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
4576099 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
4576164 CATATGC
131 CATATGC
4576171 AAGCCCATTTGGG
1 AAGCCCATTTGGG
4576184 GAGACTACTC
Statistics
Matches: 144, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
135 93 0.65
136 51 0.35
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:4578002 original size:26 final size:26
Alignment explanation
Indices: 4577966--4578101 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
4577956 CATGATATTC
4577966 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
4577992 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4578018 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
4578044 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4578070 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
4578096 TTATCA
1 TTATCA
4578102 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:4580083 original size:26 final size:26
Alignment explanation
Indices: 4580047--4580181 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
4580037 CATGATATTC
4580047 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
4580073 TTATCATGAAACATTTACCTTACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4580099 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
4580125 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4580151 TTATCATGGAACA-TTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
4580176 TTATCA
1 TTATCA
4580182 ATTTGTATCA
Statistics
Matches: 101, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 17 0.17
26 84 0.83
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:4585784 original size:18 final size:19
Alignment explanation
Indices: 4585757--4585794 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
4585747 TCAATTAAAT
*
4585757 AAATTATTTAAAATTTATA
1 AAATTATTTAAAAATTATA
4585776 AAATT-TTTAAAAATTATA
1 AAATTATTTAAAAATTATA
4585794 A
1 A
4585795 TTAAAATGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
AAATTATTTAAAAATTATA
Found at i:4589394 original size:81 final size:80
Alignment explanation
Indices: 4589278--4589491 Score: 277
Period size: 81 Copynumber: 2.6 Consensus size: 80
4589268 TATTAGAGTT
* *
4589278 ATGAAGAGAATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGGTACCT
1 ATGAAAAGGATTTGGTCCT-CCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGGTACCT
4589343 ACGG-AGAACTAGAATC
65 ACGGAAG-ACTAGAATC
* * ** * *
4589359 GTGAAAAGGATTTGGTCCTCTCGGAGCTTCTCTCTTCATGATGACATTGAAACCACTAGGTGCCT
1 ATGAAAAGGATTTGGTCCTC-CGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGGTACCT
* *
4589424 ACGGAAGATTAGAATT
65 ACGGAAGACTAGAATC
* *
4589440 ATGAAGAGGATTTGGTCCTCCTGGAGTTTCTTTCTTCACAATGACATTAAAA
1 ATGAAAAGGATTTGGTCCTCC-GGAGTTTCTCTCTTCACAATGACATTAAAA
4589492 TCGCTAAGTG
Statistics
Matches: 113, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
80 2 0.02
81 109 0.96
82 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (80 bp):
ATGAAAAGGATTTGGTCCTCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGGTACCTA
CGGAAGACTAGAATC
Found at i:4589545 original size:63 final size:63
Alignment explanation
Indices: 4589444--4589577 Score: 189
Period size: 63 Copynumber: 2.1 Consensus size: 63
4589434 AGAATTATGA
* * * * *
4589444 AGAGGATTTGGTCCTCCTGGAGTTTCTTTCTTCACAATGACATTAAAATCGCTAAGTGCTTGC
1 AGAGGATTTGGTCCTCCCGGAGTTTCTTTCTTCACAATGACATTAAAACCACTAAGAGCCTGC
* *
4589507 AGAGGATTTGGTCCTCCCGGAGTTTCTCTT-TTCGCAATGACATTAAAACCACTAGGAGCCTGC
1 AGAGGATTTGGTCCTCCCGGAGTTTCT-TTCTTCACAATGACATTAAAACCACTAAGAGCCTGC
4589570 AGAGGATT
1 AGAGGATT
4589578 AGAATCGTGA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
63 61 0.97
64 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (63 bp):
AGAGGATTTGGTCCTCCCGGAGTTTCTTTCTTCACAATGACATTAAAACCACTAAGAGCCTGC
Found at i:4589625 original size:144 final size:144
Alignment explanation
Indices: 4589365--4589632 Score: 392
Period size: 144 Copynumber: 1.9 Consensus size: 144
4589355 AATCGTGAAA
* ** * * *
4589365 AGGATTTGGTCCTCTCGGAGCTTCTCTCTTCATGATGACATTGAAACCACTAGGTGCCTACGGAA
1 AGGATTTGGTCCTCCCGGAGCTTCTCTCTTCACAATGACATTAAAACCACTAGGAGCCTACAGAA
* * * *
4589430 GATTAGAATTATGAAGAGGATTTGGTCCTCCTGGAGTTTCTTTCTTCACAATGACATTAAAATCG
66 GATTAGAATCATGAAGAGGATTTGGTCCTCCCGGAGCTTCTCTCTTCACAATGACATTAAAATCG
4589495 CTAAGTGCTTGCAG
131 CTAAGTGCTTGCAG
* * * * *
4589509 AGGATTTGGTCCTCCCGGAGTTTCTCTTTTCGCAATGACATTAAAACCACTAGGAGCCTGCAGAG
1 AGGATTTGGTCCTCCCGGAGCTTCTCTCTTCACAATGACATTAAAACCACTAGGAGCCTACAGAA
*
4589574 GATTAGAATCGTGAAGAGGATTTGGTCCTCCCGGAGCTTCTCTCTTCACAATGACATTA
66 GATTAGAATCATGAAGAGGATTTGGTCCTCCCGGAGCTTCTCTCTTCACAATGACATTA
4589633 TAACCACTAG
Statistics
Matches: 108, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
144 108 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (144 bp):
AGGATTTGGTCCTCCCGGAGCTTCTCTCTTCACAATGACATTAAAACCACTAGGAGCCTACAGAA
GATTAGAATCATGAAGAGGATTTGGTCCTCCCGGAGCTTCTCTCTTCACAATGACATTAAAATCG
CTAAGTGCTTGCAG
Found at i:4589642 original size:81 final size:81
Alignment explanation
Indices: 4589507--4589955 Score: 695
Period size: 81 Copynumber: 5.5 Consensus size: 81
4589497 AAGTGCTTGC
* * *
4589507 AGAGGATTTGGTCCTCCCGGAGTTTCTCTTTTCGCAATGACATTAAAACCACTAGGAGCCTGCAG
1 AGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGGAGCCTGCAA
4589572 AGGATTAGAATCGTGA
66 AGGATTAGAATCGTGA
* *
4589588 AGAGGATTTGGTCCTCCCGGAGCTTCTCTCTTCACAATGACATTATAACCACTAGGAGCCTGCAA
1 AGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGGAGCCTGCAA
4589653 AGGATTAGAATCGTGA
66 AGGATTAGAATCGTGA
* * * *
4589669 AGAGGATTTGGTCCTCTCGGAGTTTCTCTCTTCATAATGACATTAAAACCACTAAGTGCCTGCAA
1 AGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGGAGCCTGCAA
4589734 AGGATTAGAATCGTGA
66 AGGATTAGAATCGTGA
* *
4589750 AGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAAGAGCCCGCAA
1 AGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGGAGCCTGCAA
* *
4589815 AGGATTAGAATCATGT
66 AGGATTAGAATCGTGA
*
4589831 AGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGATATTAAAACCACTAGGTA-CCTG-A
1 AGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGG-AGCCTGCA
*
4589894 AGAGGATTAGAATTGTGA
65 A-AGGATTAGAATCGTGA
* * **
4589912 AGAGAATTTGATCCTCCCGGAGTTTCTCTCTTCATGATGACATT
1 AGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATT
4589956 TTTAACATTT
Statistics
Matches: 338, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
80 2 0.01
81 335 0.99
82 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (81 bp):
AGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGGAGCCTGCAA
AGGATTAGAATCGTGA
Found at i:4589678 original size:225 final size:230
Alignment explanation
Indices: 4589282--4589955 Score: 812
Period size: 225 Copynumber: 2.9 Consensus size: 230
4589272 AGAGTTATGA
* * *
4589282 AGAGAATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGGTA-CCTACG
1 AGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGG-AGCCTGCA
* * * * **
4589346 GAGAACTAGAATCGTGAAAAGGATTTGGTCCTCTCGGAGCTTCTCTCTTCATGATGACATTGAAA
65 GAGGATTAGAATCGTGAAGAGGATTTGGTCCTCCCGGAGCTTCTCTCTTCACAATGACATT-AAA
* * * * *
4589411 CCACTAGGTGCCTACGGAA-GATTAGAATTATGAAGAGGATTTGGTCCTCCTGGAGTTTCTTTCT
129 CCACTAGGAGCCTGC-AAAGGATTAGAATTGTGAAGAGGATTTGGTCCTCCTGGAGTTTCTCTCT
* * *
4589475 TCACAATGACATTAAAATCGCTAA-G-TGC-TT-G-C-
193 TCATAATGACATTAAAACCACTAAGGCTGCATTAGACG
* *
4589507 AGAGGATTTGGTCCTCCCGGAGTTTCTCTTTTCGCAATGACATTAAAACCACTAGGAGCCTGCAG
1 AGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGGAGCCTGCAG
4589572 AGGATTAGAATCGTGAAGAGGATTTGGTCCTCCCGGAGCTTCTCTCTTCACAATGACATTATAAC
66 AGGATTAGAATCGTGAAGAGGATTTGGTCCTCCCGGAGCTTCTCTCTTCACAATGACATTA-AAC
*
4589637 CACTAGGAGCCTGCAAAGGATTAGAATCGTGAAGAGGATTTGGTCCT-CTCGGAGTTTCTCTCTT
130 CACTAGGAGCCTGCAAAGGATTAGAATTGTGAAGAGGATTTGGTCCTCCT-GGAGTTTCTCTCTT
4589701 CATAATGACATTAAAACCACTAAGTGCCTGCAAAGGATTAGAATCGTG
194 CATAATGACATTAAAACCACTAAG-G-CTGC-----ATTAG-A-C--G
* *
4589749 AAGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAAGAGCCCGCA
1 -AGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGGAGCCTGCA
* * * * *
4589814 AAGGATTAGAATCATGTAGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGATATTAAAA
65 GAGGATTAGAATCGTGAAGAGGATTTGGTCCTCCCGGAGCTTCTCTCTTCACAATGACATT-AAA
* * *
4589879 CCACTAGGTA-CCTG-AAGAGGATTAGAATTGTGAAGAGAATTTGATCCTCCCGGAGTTTCTCTC
129 CCACTAGG-AGCCTGCAA-AGGATTAGAATTGTGAAGAGGATTTGGTCCTCCTGGAGTTTCTCTC
*
4589942 TTCATGATGACATT
192 TTCATAATGACATT
4589956 TTTAACATTT
Statistics
Matches: 389, Mismatches: 34, Indels: 34
0.85 0.07 0.07
Matches are distributed among these distances:
224 6 0.02
225 187 0.48
227 1 0.00
229 3 0.01
235 2 0.01
236 1 0.00
239 1 0.00
242 2 0.01
243 183 0.47
244 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (230 bp):
AGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAAAACCACTAGGAGCCTGCAG
AGGATTAGAATCGTGAAGAGGATTTGGTCCTCCCGGAGCTTCTCTCTTCACAATGACATTAAACC
ACTAGGAGCCTGCAAAGGATTAGAATTGTGAAGAGGATTTGGTCCTCCTGGAGTTTCTCTCTTCA
TAATGACATTAAAACCACTAAGGCTGCATTAGACG
Found at i:4595102 original size:162 final size:162
Alignment explanation
Indices: 4594835--4595376 Score: 748
Period size: 162 Copynumber: 3.3 Consensus size: 162
4594825 TATGCCCAGA
* * * *
4594835 GCTAGCAGAGGATTAGAGTTGTGAAGAGGATTTGGTCCTTCC-GGAGTTTCTCTTTTCACAATGA
1 GCTAGCAGAGGATTAGAGTTATGAAGAGGATTTGATCC-TCCTAGAGTTTCTCTCTTCACAATGA
* * *
4594899 TGTTTAAACCACTAGGTGTCAACGGAGGATTAGAGTTATGAATAGGATTTGGTCCTCCCGGAGTT
65 TGTTTAAACCACTAGGTGCCAACGGAGGATTAGAATTATGAAGAGGATTTGGTCCTCCCGGAGTT
4594964 TCTCTCTTCACAATGACATTAAAACCACTAAGT
130 TCTCTCTTCACAATGACATTAAAACCACTAAGT
* * ** * **
4594997 GCTAGCAGAGGATTAGAATTACGAATTGGATTTGATCCTCCTAAAGTTTCTCTCTTCATGATGAT
1 GCTAGCAGAGGATTAGAGTTATGAAGAGGATTTGATCCTCCTAGAGTTTCTCTCTTCACAATGAT
* *
4595062 GTTTAAACCACTAGGTGCCAACAGAGGATTAGAATTATGAAGAGGATTTGGAT-CTCCCGGGGTT
66 GTTTAAACCACTAGGTGCCAACGGAGGATTAGAATTATGAAGAGGATTTGG-TCCTCCCGGAGTT
* * *
4595126 TCTCTCTTCACAATGATATTAAAACCACCATGT
130 TCTCTCTTCACAATGACATTAAAACCACTAAGT
* *
4595159 GCCAGCAGAGGATTAGAGTTATGAAGAGGATTT-AGTCCTCCTAGAGTTTATCTCTTCACAATGA
1 GCTAGCAGAGGATTAGAGTTATGAAGAGGATTTGA-TCCTCCTAGAGTTTCTCTCTTCACAATGA
* * * * *
4595223 TGTTTAAACCACTAGGTGCCAACGGAAGATTAGAAATATGAAGAGGATTTGGACCTCTCGGAGCT
65 TGTTTAAACCACTAGGTGCCAACGGAGGATTAGAATTATGAAGAGGATTTGGTCCTCCCGGAGTT
4595288 TCTCTCTTCACAATGACATTAAAACCACTAAGT
130 TCTCTCTTCACAATGACATTAAAACCACTAAGT
** * ** *
4595321 GCTAGTGGAGGATTAGAGTTATGAAGAGGATTTGGTCCTCCCGGAGTTTCTTTCTT
1 GCTAGCAGAGGATTAGAGTTATGAAGAGGATTTGATCCTCCTAGAGTTTCTCTCTT
4595377 TATGATGACA
Statistics
Matches: 329, Mismatches: 46, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
161 4 0.01
162 324 0.98
163 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31
Consensus pattern (162 bp):
GCTAGCAGAGGATTAGAGTTATGAAGAGGATTTGATCCTCCTAGAGTTTCTCTCTTCACAATGAT
GTTTAAACCACTAGGTGCCAACGGAGGATTAGAATTATGAAGAGGATTTGGTCCTCCCGGAGTTT
CTCTCTTCACAATGACATTAAAACCACTAAGT
Found at i:4595388 original size:81 final size:81
Alignment explanation
Indices: 4594840--4595376 Score: 617
Period size: 81 Copynumber: 6.6 Consensus size: 81
4594830 CCAGAGCTAG
* * * * *
4594840 CAGAGGATTAGAGTTGTGAAGAGGATTTGGTCCTTCCGGAGTTTCTCTTTTCACAATGATGTTTA
1 CAGAGGATTAGAGTTATGAAGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGATATTAA
*
4594905 AACCACTAGGTGTCAA
66 AACCACTAGGTGCCAA
* * *
4594921 CGGAGGATTAGAGTTATGAATAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGACATTAA
1 CAGAGGATTAGAGTTATGAAGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGATATTAA
* * *
4594986 AACCACTAAGTGCTAG
66 AACCACTAGGTGCCAA
* * ** * *** ** * *
4595002 CAGAGGATTAGAATTACGAATTGGATTTGATCCTCCTAAAGTTTCTCTCTTCATGATGATGTTTA
1 CAGAGGATTAGAGTTATGAAGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGATATTAA
4595067 AACCACTAGGTGCCAA
66 AACCACTAGGTGCCAA
* *
4595083 CAGAGGATTAGAATTATGAAGAGGATTTGGAT-CTCCCGGGGTTTCTCTCTTCACAATGATATTA
1 CAGAGGATTAGAGTTATGAAGAGGATTTGG-TCCTCCCGGAGTTTCTCTCTTCACAATGATATTA
* * *
4595147 AAACCACCATGTGCCAG
65 AAACCACTAGGTGCCAA
* ** * * *
4595164 CAGAGGATTAGAGTTATGAAGAGGATTTAGTCCTCCTAGAGTTTATCTCTTCACAATGATGTTTA
1 CAGAGGATTAGAGTTATGAAGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGATATTAA
4595229 AACCACTAGGTGCCAA
66 AACCACTAGGTGCCAA
* * ** * * * *
4595245 CGGAAGATTAGAAATATGAAGAGGATTTGGACCTCTCGGAGCTTCTCTCTTCACAATGACATTAA
1 CAGAGGATTAGAGTTATGAAGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGATATTAA
* * *
4595310 AACCACTAAGTGCTAG
66 AACCACTAGGTGCCAA
** *
4595326 TGGAGGATTAGAGTTATGAAGAGGATTTGGTCCTCCCGGAGTTTCTTTCTT
1 CAGAGGATTAGAGTTATGAAGAGGATTTGGTCCTCCCGGAGTTTCTCTCTT
4595377 TATGATGACA
Statistics
Matches: 375, Mismatches: 79, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
80 1 0.00
81 373 0.99
82 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (81 bp):
CAGAGGATTAGAGTTATGAAGAGGATTTGGTCCTCCCGGAGTTTCTCTCTTCACAATGATATTAA
AACCACTAGGTGCCAA
Found at i:4605436 original size:15 final size:15
Alignment explanation
Indices: 4605416--4605446 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
4605406 TGGGTATATG
4605416 ACTTTTGCATGATGT
1 ACTTTTGCATGATGT
4605431 ACTTTTGCATGATGT
1 ACTTTTGCATGATGT
4605446 A
1 A
4605447 GTATCATTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.19, T:0.45
Consensus pattern (15 bp):
ACTTTTGCATGATGT
Found at i:4605823 original size:14 final size:15
Alignment explanation
Indices: 4605795--4605824 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4605785 TGAAATGACT
4605795 TTGTAATTAAATAAG
1 TTGTAATTAAATAAG
4605810 TTGTAATT-AATAAG
1 TTGTAATTAAATAAG
4605824 T
1 T
4605825 GGAAAGCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (15 bp):
TTGTAATTAAATAAG
Found at i:4609939 original size:31 final size:30
Alignment explanation
Indices: 4609893--4609950 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
4609883 ATGTTAAAAG
*
4609893 TAAAGTATAAAGATTAAATCTCAAATTTGAA
1 TAAAATATAAAGATTAAA-CTCAAATTTGAA
* *
4609924 TAAAATATAAGGATTAAACTGAAATTT
1 TAAAATATAAAGATTAAACTCAAATTT
4609951 AACCATAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 8 0.33
31 16 0.67
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (30 bp):
TAAAATATAAAGATTAAACTCAAATTTGAA
Found at i:4610226 original size:88 final size:88
Alignment explanation
Indices: 4610063--4610232 Score: 200
Period size: 88 Copynumber: 1.9 Consensus size: 88
4610053 GTTATAGATT
* * * * * *
4610063 TGAGTGAAATATAGGGATCAAAATTAAAATTTAACCATAAAAATTTAAATGATTAGAATTGAAAT
1 TGAGTGAAATATAAGGATCAAAACTAAAATTTAACCATAAAAATCTAAATAATTAGAATTAAAAC
4610128 TTAGCAATTATCTTCTCGAAATC
66 TTAGCAATTATCTTCTCGAAATC
* * * *
4610151 TGAGT-AATATATAAGGATCAAAACTGAAATTTAGCCATAAAAA-CTAGAGTAATTAGTATTAAA
1 TGAGTGAA-ATATAAGGATCAAAACTAAAATTTAACCATAAAAATCTA-AATAATTAGAATTAAA
**
4610214 ACTTAGTTATTATCTTCTC
64 ACTTAGCAATTATCTTCTC
4610233 ATATTAAAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
87 4 0.06
88 64 0.94
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (88 bp):
TGAGTGAAATATAAGGATCAAAACTAAAATTTAACCATAAAAATCTAAATAATTAGAATTAAAAC
TTAGCAATTATCTTCTCGAAATC
Found at i:4620813 original size:3 final size:3
Alignment explanation
Indices: 4620798--4620847 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
4620788 TAATTCAATG
*
4620798 AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
4620846 AA
1 AA
4620848 ATTCCCCCTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:4621420 original size:23 final size:24
Alignment explanation
Indices: 4621379--4621423 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
4621369 TAAGTTAGCA
*
4621379 TTTTTAAAAAATTATTTAAAATGT
1 TTTTTAAAAAATTACTTAAAATGT
*
4621403 TTTTTATAAAA-TACTTAAAAT
1 TTTTTAAAAAATTACTTAAAAT
4621424 TATTCATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
TTTTTAAAAAATTACTTAAAATGT
Found at i:4625013 original size:30 final size:30
Alignment explanation
Indices: 4624977--4625033 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
4624967 TATTTCAATA
4624977 CATAATTTATAAATTATTTTTTATTTTATT
1 CATAATTTATAAATTATTTTTTATTTTATT
4625007 CATAATTTATAAATTATTTTTTATTTT
1 CATAATTTATAAATTATTTTTTATTTT
4625034 GTTCTAGCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (30 bp):
CATAATTTATAAATTATTTTTTATTTTATT
Found at i:4625827 original size:3 final size:3
Alignment explanation
Indices: 4625821--4625846 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4625811 TAATTATTAC
4625821 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
4625847 GGATGTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:4628033 original size:2 final size:2
Alignment explanation
Indices: 4628026--4628052 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4628016 ACTAACCTTT
4628026 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
4628053 GTGTGTATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4628346 original size:2 final size:2
Alignment explanation
Indices: 4628339--4628369 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4628329 TAATTTCTAT
4628339 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4628370 TGTGTTATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4630335 original size:17 final size:17
Alignment explanation
Indices: 4630313--4630345 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
4630303 TTCTTAATTG
4630313 ATATTATATTTTATATA
1 ATATTATATTTTATATA
4630330 ATATTATATTTTATAT
1 ATATTATATTTTATAT
4630346 TATCAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATATTATATTTTATATA
Found at i:4635316 original size:30 final size:30
Alignment explanation
Indices: 4635281--4635459 Score: 236
Period size: 30 Copynumber: 6.0 Consensus size: 30
4635271 TTAAACTTTT
*
4635281 CTCCACTAGCCACACCTTTTCCACCACCAA
1 CTCCACTAGCCACACCTTCTCCACCACCAA
*
4635311 CTCCACTAGCCACACCTTTTCCACCACCAA
1 CTCCACTAGCCACACCTTCTCCACCACCAA
* *
4635341 CTCCACTAGCCACTCCTTTTCCACCACCAA
1 CTCCACTAGCCACACCTTCTCCACCACCAA
*
4635371 CTCCATTAGCCACACCTTCTCCACCACCAA
1 CTCCACTAGCCACACCTTCTCCACCACCAA
* ** *
4635401 ATCCACTAGCCACA-CTTGCTCCATTACCTA
1 CTCCACTAGCCACACCTT-CTCCACCACCAA
*
4635431 CTCCACTAACCACA-CTTGCTCCACCACCA
1 CTCCACTAGCCACACCTT-CTCCACCACCA
4635460 CTTGTACCTA
Statistics
Matches: 134, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
29 3 0.02
30 131 0.98
ACGTcount: A:0.26, C:0.49, G:0.04, T:0.21
Consensus pattern (30 bp):
CTCCACTAGCCACACCTTCTCCACCACCAA
Found at i:4635333 original size:18 final size:18
Alignment explanation
Indices: 4635282--4635334 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
4635272 TAAACTTTTC
4635282 TCCACTAGCCACACCTTT
1 TCCACTAGCCACACCTTT
*
4635300 TCCACCA-CCA-A-C---
1 TCCACTAGCCACACCTTT
4635312 TCCACTAGCCACACCTTT
1 TCCACTAGCCACACCTTT
4635330 TCCAC
1 TCCAC
4635335 CACCAACTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 12
0.66 0.05 0.29
Matches are distributed among these distances:
12 6 0.22
13 3 0.11
14 1 0.04
15 2 0.07
16 1 0.04
17 3 0.11
18 11 0.41
ACGTcount: A:0.25, C:0.49, G:0.04, T:0.23
Consensus pattern (18 bp):
TCCACTAGCCACACCTTT
Found at i:4636031 original size:2 final size:2
Alignment explanation
Indices: 4636024--4636097 Score: 52
Period size: 2 Copynumber: 39.5 Consensus size: 2
4636014 ATATTACGTG
* * * * *
4636024 TA TA TA TA TA TA TA T- TT TA TA CTA T- TT TA TG TA TA TA TC TT
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
4636065 TA -A TA T- TA TA T- TA T- TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4636098 TTTTTTTTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
1 6 0.10
2 50 0.86
3 2 0.03
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (2 bp):
TA
Found at i:4636086 original size:55 final size:54
Alignment explanation
Indices: 4635965--4636093 Score: 138
Period size: 56 Copynumber: 2.3 Consensus size: 54
4635955 TATTTCTTAA
*
4635965 TATTATAT-TATATATATTCTTTTAATATATTAGGTATATTTTAAATTCTATAT
1 TATTATATATATATATATTCTTATAATATATTAGGTATATTTTAAATTCTATAT
* * * *
4636018 TACGTGTATATATATATATATT-TTATACTATTTTATGTATATATCTTTAATAT-TATAT
1 TA--T-TATATATATATATATTCTTATAATATATTAGGTATAT-T-TTAAAT-TCTATAT
4636076 TATTATATATATATATAT
1 TATTATATATATATATAT
4636094 ATATTTTTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
53 2 0.03
55 16 0.25
56 22 0.34
57 11 0.17
58 12 0.19
59 1 0.02
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (54 bp):
TATTATATATATATATATTCTTATAATATATTAGGTATATTTTAAATTCTATAT
Found at i:4636144 original size:22 final size:24
Alignment explanation
Indices: 4636116--4636174 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
4636106 ACATGTTATC
4636116 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
4636138 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
4636163 TTATGTACATAT
1 TTATGTATATAT
4636175 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:4636164 original size:25 final size:25
Alignment explanation
Indices: 4636132--4636180 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
4636122 ATATATCTTA
**
4636132 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
4636157 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
4636181 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:4636372 original size:7 final size:8
Alignment explanation
Indices: 4636337--4636379 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
4636327 TAATTATTAT
*
4636337 TATTCTAA
1 TATTTTAA
*
4636345 TATTTTGA
1 TATTTTAA
4636353 TATTTTAA
1 TATTTTAA
4636361 TATTTT-A
1 TATTTTAA
*
4636368 TATTTTAT
1 TATTTTAA
4636376 TATT
1 TATT
4636380 CACATCATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
7 7 0.23
8 23 0.77
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:4636372 original size:15 final size:16
Alignment explanation
Indices: 4636337--4636379 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
4636327 TAATTATTAT
*
4636337 TATTCTAATATTTTGA
1 TATTTTAATATTTTGA
4636353 TATTTTAATATTTT-A
1 TATTTTAATATTTTGA
*
4636368 TATTTTATTATT
1 TATTTTAATATT
4636380 CACATCATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (16 bp):
TATTTTAATATTTTGA
Found at i:4644880 original size:21 final size:20
Alignment explanation
Indices: 4644853--4644902 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
4644843 AGATTTATTC
*
4644853 TTCAATTATTGGTTTAATTAG
1 TTCAATTATAGG-TTAATTAG
* *
4644874 TTGAATTGATAGGTTAATTGG
1 TTCAATT-ATAGGTTAATTAG
4644895 TTCAATTA
1 TTCAATTA
4644903 CCTATTTGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.04
21 19 0.79
22 4 0.17
ACGTcount: A:0.30, C:0.04, G:0.18, T:0.48
Consensus pattern (20 bp):
TTCAATTATAGGTTAATTAG
Found at i:4645766 original size:19 final size:20
Alignment explanation
Indices: 4645727--4645774 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
4645717 TTACAAAAAG
4645727 AATTCAAAATAATTTTCAAA
1 AATTCAAAATAATTTTCAAA
4645747 AATTCAAAAT-ATTTAT-AAA
1 AATTCAAAATAATTT-TCAAA
4645766 AATTTCAAA
1 AA-TTCAAA
4645775 TTTTATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.35
Consensus pattern (20 bp):
AATTCAAAATAATTTTCAAA
Found at i:4645775 original size:19 final size:18
Alignment explanation
Indices: 4645744--4645781 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
4645734 AATAATTTTC
4645744 AAAAATTCAAAATATTTAT
1 AAAAATTCAAAAT-TTTAT
4645763 AAAAATTTC-AAATTTTAT
1 AAAAA-TTCAAAATTTTAT
4645781 A
1 A
4645782 TTTTAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 9 0.50
20 3 0.17
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (18 bp):
AAAAATTCAAAATTTTAT
Found at i:4645804 original size:18 final size:19
Alignment explanation
Indices: 4645781--4645816 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
4645771 CAAATTTTAT
*
4645781 ATTTTAAA-ATTTAAAAAG
1 ATTTTAAACATATAAAAAG
4645799 ATTTTAAACATATAAAAA
1 ATTTTAAACATATAAAAA
4645817 AAGTTGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (19 bp):
ATTTTAAACATATAAAAAG
Found at i:4647365 original size:19 final size:19
Alignment explanation
Indices: 4647327--4647365 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
4647317 AGCTTTCTGA
* *
4647327 CTTGCGTCACACGGCTAAG
1 CTTGAGTCACACGGCCAAG
*
4647346 CTTGAGTCACATGGCCAAG
1 CTTGAGTCACACGGCCAAG
4647365 C
1 C
4647366 CACATGCCCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.21
Consensus pattern (19 bp):
CTTGAGTCACACGGCCAAG
Found at i:4650260 original size:137 final size:136
Alignment explanation
Indices: 4650014--4650437 Score: 749
Period size: 137 Copynumber: 3.1 Consensus size: 136
4650004 GAGTAGTCTC
*
4650014 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* * *
4650079 TGTTATCTGAATAAAGGGCTAAGGCCCGATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TATTATCTGAATAAGGGGCTAAGGCCAG-TTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
4650144 ACTGTTA
130 ACTGTTA
4650151 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
4650216 TATTATCTGAATAAGGGGCTAAGGCCTAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TATTATCTGAATAAGGGGCTAAGGCC-AGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
4650281 ACTGTTA
130 ACTGTTA
4650288 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
4650353 TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGTTCTGGCCCAGTTCC
66 TATTATCTGAATAAGGGGCTAAGG-CCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
4650418 ACTGTTA
130 ACTGTTA
**
4650425 CCTGAATGGGCTT
1 CCCAAATGGGCTT
4650438 AGGCCCAATG
Statistics
Matches: 277, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
137 274 0.99
138 3 0.01
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TATTATCTGAATAAGGGGCTAAGGCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:4651298 original size:20 final size:22
Alignment explanation
Indices: 4651264--4651304 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
4651254 CTTTACTTTC
*
4651264 CACACTCATTCCATATGCATAA
1 CACACTCATTCCATAAGCATAA
4651286 CACAC-CATT-CATAAGCATA
1 CACACTCATTCCATAAGCATA
4651305 TCATTCAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 4 0.22
22 5 0.28
ACGTcount: A:0.39, C:0.32, G:0.05, T:0.24
Consensus pattern (22 bp):
CACACTCATTCCATAAGCATAA
Found at i:4651834 original size:21 final size:21
Alignment explanation
Indices: 4651805--4651872 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
4651795 AAAGTTGAAT
*
4651805 AGAAGCTCGTAAGAGCTTAAC
1 AGAAACTCGTAAGAGCTTAAC
*
4651826 AGAAACTCGTATGAG-TTAAAC
1 AGAAACTCGTAAGAGCTT-AAC
* *
4651847 AGAAACTCATAAGAGCTAAAC
1 AGAAACTCGTAAGAGCTTAAC
4651868 AGAAA
1 AGAAA
4651873 GTAAAAAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 2 0.05
21 37 0.93
22 1 0.03
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (21 bp):
AGAAACTCGTAAGAGCTTAAC
Found at i:4666622 original size:69 final size:69
Alignment explanation
Indices: 4666497--4666627 Score: 201
Period size: 69 Copynumber: 1.9 Consensus size: 69
4666487 GTTTTCCAAG
* * *
4666497 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGTAATTTCAATTTATG
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGTAATTTCAATTTATG
4666562 TTTC
66 TTTC
* *
4666566 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGT-ATTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGA-GTAATTTCAATTT
4666628 CTCTTTTTAA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
69 54 0.96
70 2 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGTAATTTCAATTTATG
TTTC
Found at i:4666774 original size:71 final size:71
Alignment explanation
Indices: 4666653--4666785 Score: 212
Period size: 71 Copynumber: 1.9 Consensus size: 71
4666643 GTTTTCCAAG
* * *
4666653 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
4666718 GTTTCA
66 GTTTCA
* * *
4666724 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
4666786 CTGCTTTTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 56 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTCA
Found at i:4666838 original size:315 final size:319
Alignment explanation
Indices: 4666250--4667099 Score: 1566
Period size: 315 Copynumber: 2.7 Consensus size: 319
4666240 TTGTTTTTTC
4666250 CAAAAATCAACTCATA-TGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
4666314 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGC--GAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
4666377 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
131 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
4666442 CCTCA-GGCACGCTGAGGTATTTTCAATTTCTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGC
196 CCTCAGGGCACGCTGAGGTATTTTCAA-TTCTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGC
*
4666506 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA-GTAATTTCAATTTATGTTT
260 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATCTATGTTT
4666565 C-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTA-TTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
4666628 CT-CTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
4666692 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
131 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
4666757 CCTCAGGGCACGCTGAGGTATTTTCAATTCTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCT
196 CCTCAGGGCACGCTGAGGTATTTTCAATTCTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCT
4666822 CATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATCTATGTTT
261 CATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATCTATGTTT
4666881 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
4666946 CTGC-TTTTAATTCATG-TTT-C-AGAAAAT-AGCTCATATTGCGAGA-GTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
*
4667005 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAA
131 GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
*
4667070 CCTCAGGGCACGCTGAGGTAATTTCAATTC
196 CCTCAGGGCACGCTGAGGTATTTTCAATTC
4667100 CTATAATCTA
Statistics
Matches: 524, Mismatches: 3, Indels: 18
0.96 0.01 0.03
Matches are distributed among these distances:
313 150 0.29
314 41 0.08
315 212 0.40
316 41 0.08
317 56 0.11
318 23 0.04
319 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32
Consensus pattern (319 bp):
CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGTTGAGGTAATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
CCTCAGGGCACGCTGAGGTATTTTCAATTCTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCT
CATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATCTATGTTT
Found at i:4666853 original size:159 final size:160
Alignment explanation
Indices: 4666250--4667098 Score: 1566
Period size: 159 Copynumber: 5.4 Consensus size: 160
4666240 TTGTTTTTTC
4666250 CAAAAATCAACTCATA-TGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
4666314 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGC--GAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
4666377 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
4666407 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA-GGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
4666471 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
4666536 GACACGTTGA-GTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
4666565 C-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTA-TTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
4666628 CT-CTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
4666692 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
4666722 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA-TT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
4666786 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
*
4666851 GACACGTTGAGGTAATTTCAATCTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
4666881 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
4666946 CTGC-TTTTAATTCATG-TTT-C-AGAAAAT-AGCTCATATTGCGAGA-GTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
4667005 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
* *
4667035 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCTGAGGTAATTTCAATT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
4667099 CCTATAATCT
Statistics
Matches: 679, Mismatches: 4, Indels: 21
0.96 0.01 0.03
Matches are distributed among these distances:
154 107 0.16
155 16 0.02
156 79 0.12
157 154 0.23
158 117 0.17
159 200 0.29
160 6 0.01
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32
Consensus pattern (160 bp):
CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGTTGAGGTAATTTCAATTTATGTTT
Found at i:4666933 original size:71 final size:71
Alignment explanation
Indices: 4666812--4667139 Score: 277
Period size: 71 Copynumber: 4.5 Consensus size: 71
4666802 GTTTTCCAAG
* * *
4666812 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATCTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATCTAT
4666877 GTTTCA
66 GTTTCA
* * * * *
4666883 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATCTAT
*
4666948 GCTTTTA
66 G-TTTCA
** * * * *
4666955 ATTCATGTTTCAGAAAAT-AGCTCATAT-TGCGAGAGTGAGTTGAGCCTCAAGACACGTTGAGGT
1 A---A--AATC---AACTCA--T-AT-TGCGAGA-AGTGAGTTGAGCCTCAAGACACGCTGAGGT
*
4667018 AATTTCAATTTATGTTTCA
53 AATTTCAATCTATGTTTCA
* * *
4667037 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCTGAGGTAATTTCAATTCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA-T-CT
** *
4667102 AT-AATCT
64 ATGTTTCA
*
4667109 AAAATCAACTCATATTGCGAGAGGTG-GTTGA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGA
4667140 CCTTTTAATT
Statistics
Matches: 205, Mismatches: 34, Indels: 36
0.75 0.12 0.13
Matches are distributed among these distances:
71 98 0.48
72 38 0.19
73 4 0.02
74 3 0.01
75 2 0.01
77 4 0.02
79 2 0.01
80 3 0.01
81 1 0.00
82 10 0.05
83 40 0.20
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATCTAT
GTTTCA
Found at i:4667017 original size:83 final size:84
Alignment explanation
Indices: 4666875--4667028 Score: 240
Period size: 83 Copynumber: 1.8 Consensus size: 84
4666865 ATTTCAATCT
* * *
4666875 ATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
1 ATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTT
4666940 CAATTTCTGCTTTTAATTC
66 CAATTTCTGCTTTTAATTC
* *
4666959 ATGTTTCAGAAAAT-AGCTCATATTGCGAG-AGTGAGTTGAGCCTCAAGACACGTTGAGGTAATT
1 ATGTTTCA-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATT
4667022 TCAATTT
65 TCAATTT
4667029 ATGTTTCAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
83 37 0.58
84 22 0.34
85 5 0.08
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.33
Consensus pattern (84 bp):
ATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTT
CAATTTCTGCTTTTAATTC
Found at i:4667238 original size:55 final size:54
Alignment explanation
Indices: 4667109--4667300 Score: 249
Period size: 52 Copynumber: 3.7 Consensus size: 54
4667099 CCTATAATCT
* *
4667109 AAAATCAACTCATATTGCGAGAGGTG-GTTGA-CCTTTTAATTTTACTTTTTT-C
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT-TTTTTTTAA
4667161 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTGTTTTTTTAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT-TTTTTTTAA
* * *
4667216 AAAATCAACTCATATTGCGAGAGGTGAGTT-ATACC-TTT-ATTTTTGTTTTCAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGA-GCCTTTTAATTTTTTTTTTTAA
4667268 AAAATCAA-TCATA-TGCGAGA-GTGAGTTGAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4667301 AGGTATTTTT
Statistics
Matches: 127, Mismatches: 7, Indels: 14
0.86 0.05 0.09
Matches are distributed among these distances:
49 9 0.07
50 8 0.06
51 5 0.04
52 41 0.32
53 10 0.08
54 22 0.17
55 32 0.25
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (54 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTTTTTTTTAA
Found at i:4671326 original size:71 final size:70
Alignment explanation
Indices: 4671139--4671339 Score: 288
Period size: 66 Copynumber: 2.9 Consensus size: 70
4671129 CTTTTCAAGG
4671139 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTG
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTG
4671204 CTTTT
66 CTTTT
4671209 ----TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATT-TT
4671270 G-TTTT
65 GCTTTT
* ** * *
4671275 CAAAATCAACTCATATTGCAAGA-AGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGTTT
1 -AAAATCAACTCATATTGCGAGAGA-TGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT
4671339 T
64 T
4671340 AAATTGACTC
Statistics
Matches: 119, Mismatches: 5, Indels: 14
0.86 0.04 0.10
Matches are distributed among these distances:
66 62 0.52
67 3 0.03
70 3 0.03
71 51 0.43
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTG
CTTTT
Found at i:4671564 original size:71 final size:69
Alignment explanation
Indices: 4671374--4671637 Score: 314
Period size: 71 Copynumber: 3.7 Consensus size: 69
4671364 GAGTTAAGCC
* *
4671374 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
*
4671439 AAGGTAT
63 GAGGTAT
* * ** * *
4671446 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGGCACGCTG
*
4671510 AGTTAT
64 AGGTAT
4671516 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
4671581 AGGTAT
64 AGGTAT
* * ** * *
4671587 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
4671638 TTTAATTTTT
Statistics
Matches: 164, Mismatches: 23, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
69 35 0.21
70 54 0.33
71 59 0.36
72 16 0.10
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (69 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAG
GTAT
Found at i:4671580 original size:257 final size:260
Alignment explanation
Indices: 4671139--4671799 Score: 1048
Period size: 263 Copynumber: 2.5 Consensus size: 260
4671129 CTTTTCAAGG
* * ** * * *
4671139 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAA-TTTT
1 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
*
4671203 G-CTTTT--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAA
66 GTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAA
*
4671265 TTGTTGTTTTCAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA-
131 TTTTTGTTTTCAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTAT
4671329 TT-TTTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
196 TTATTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
*
4671392 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTAAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
*
4671457 GTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGTTATTTTTAA
66 GTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAA
* *
4671522 TTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTAT
131 TTTTTGTTTTCAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA-
4671587 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTT
195 -TTTA-TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTT
4671652 TTC
258 TTC
*
4671655 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
* * * * *
4671720 GTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTC
66 GTGTTTTAA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTT
*
4671785 AATTTCTGTTTTCAA
129 AATTTTTGTTTTCAA
4671800 TTTACGTTGT
Statistics
Matches: 374, Mismatches: 22, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
253 52 0.14
254 5 0.01
255 4 0.01
257 116 0.31
260 2 0.01
262 4 0.01
263 129 0.34
265 62 0.17
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (260 bp):
AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
GTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAA
TTTTTGTTTTCAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTAT
TTATTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:4671682 original size:122 final size:124
Alignment explanation
Indices: 4671516--4671762 Score: 383
Period size: 122 Copynumber: 2.0 Consensus size: 124
4671506 GTTGAGTTAT
*
4671516 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTG
* *
4671581 AGGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
4671637 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACACT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACT
* * * *
4671702 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
4671762 T
1 T
4671763 CAGGTCACGC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
121 12 0.11
122 59 0.52
123 1 0.01
124 13 0.12
125 28 0.25
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (124 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTG
AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:4671758 original size:72 final size:71
Alignment explanation
Indices: 4671637--4672077 Score: 279
Period size: 72 Copynumber: 6.1 Consensus size: 71
4671627 GAGTTAAGCC
* * *
4671637 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACAC
1 TTTTCAATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
4671701 TGAGGTA
65 TGAGGTA
** *
4671708 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
4671773 TGAGGTA
65 TGAGGTA
* * ** * * * * ** * *** **
4671780 TTTTCAATTTCTG-TTTT-CAATTTACGT--TGTT-CAAGA-ATCAACTCATATTGCGAGAGGTG
1 TTTTCAATTTTTGTTTTTAAAATCAAC-TCATATTGCGAGAGGTGAGTTGAGCCT-C-AG-GGCA
* * ***
4671839 GGTTGA-ACC
62 CGCTGAGGTA
** * * *
4671848 TTTT-AATTTCTACTTTTTCAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACATG
1 TTTTCAATTT-TTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
4671912 CTGAGGTA
64 CTGAGGTA
* * ** * *
4671920 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTTCAATTTTTGTT-T--TTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
4671985 GCTGAGGTA
63 GCTGAGGTA
* ** ** * *
4671994 TTTTCAATTTTTATGTTTTAATTTCAACTTGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--GCAC
*
4672059 GCCGAGGTA
63 GCTGAGGTA
4672068 TTTTCAATTT
1 TTTTCAATTT
4672078 CCGTTTTTCA
Statistics
Matches: 268, Mismatches: 80, Indels: 41
0.69 0.21 0.11
Matches are distributed among these distances:
66 5 0.02
67 10 0.04
68 9 0.03
69 12 0.04
70 6 0.02
71 14 0.05
72 111 0.41
73 14 0.05
74 86 0.32
75 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:4672060 original size:74 final size:74
Alignment explanation
Indices: 4671867--4672078 Score: 241
Period size: 74 Copynumber: 2.9 Consensus size: 74
4671857 CTACTTTTTC
* * *
4671867 AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
4671932 GTTGTCAAA
66 GTTGTCAAA
* * *
4671941 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTT-T
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
***
4672005 -TATGT-TTT
66 GT-TGTCAAA
** ** * *
4672013 AATTTCAACTTGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTT
4672078 C
64 C
4672079 CGTTTTTCAA
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
72 34 0.29
73 4 0.03
74 78 0.67
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.33
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTGTCAAA
Found at i:4672087 original size:14 final size:14
Alignment explanation
Indices: 4672068--4672102 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
4672058 CGCCGAGGTA
4672068 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
4672082 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
4672096 CTTTCAA
1 TTTTCAA
4672103 AAAAAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:4672208 original size:73 final size:77
Alignment explanation
Indices: 4672083--4672774 Score: 314
Period size: 73 Copynumber: 8.8 Consensus size: 77
4672073 AATTTCCGTT
* *
4672083 TTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-A
1 TTTCAATTTCTGTCTGTC-AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCA
*
4672147 CACGCTG-GGTAA
65 CACGCCGAGGTAA
* *
4672159 TTTCAATTTCTGT-TGTC-AAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCA
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CA
*
4672222 CACGCCGAGGTAT
65 CACGCCGAGGTAA
* * * * * * *
4672235 TTTCAATTTCCGTTTTTCAATTTTTGCCTTTCAAAAA--AA-TCAACTCATAT-TGCGAGAGGTG
1 TTTCAATTTCTGTCTGTCAA-----------AAAAAATCAACTC-A-T-AT-TGCGAGA--GGCG
*
4672296 AGTTGAGCCTCAGG-ACACGCTGAGGTAA
49 AGTTGAGCCTCAGGCACACGCCGAGGTAA
* * * *
4672324 TTTCAATTTCTGT-TGTC-AAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG-GCA
*
4672387 CACGTCGAGGTATTTTCAA
65 CACGCCGAGG-----T-AA
* * ** *
4672406 TTTCCATTTTTCAATTTCTGCCTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTT-CA-ATTTC--TGTCTG--TCAAAAAAA---ATCAACTCATATTGCGAGAGGCGAGTTGAGC
* *
4672471 CTC-GGGACACGCTGAGGTAA
57 CTCAGGCACACGCCGAGGTAA
* * *** *
4672491 TTTCAATTTCTGT-TTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-AC
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
** *
4672551 ACGTTGAGGTAT
66 ACGCCGAGGTAA
* * * * * * *
4672563 TTTTAATTTCTGT-TTTC--AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCTC
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
* * *
4672624 ATGCGCTGAGCTAT
66 A--CGCCGAGGTAA
* * * * *
4672638 TTTCAATTTCTATCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG-GCA
* * *
4672702 CACACTGAGGTATTT
65 CACGCCGAGGTA--A
* * * * * * * *
4672717 TTTCAATTTATATTTTTC-AAAAAAATCAACTCACATTGCGAGATGTGAGTTGGGCCTC
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTC
4672775 GGGTTACATG
Statistics
Matches: 488, Mismatches: 72, Indels: 109
0.73 0.11 0.16
Matches are distributed among these distances:
72 60 0.12
73 75 0.15
74 17 0.03
75 35 0.07
76 51 0.10
77 47 0.10
78 5 0.01
79 58 0.12
80 1 0.00
81 3 0.01
82 5 0.01
83 6 0.01
84 6 0.01
85 5 0.01
86 5 0.01
87 5 0.01
88 4 0.01
89 34 0.07
90 7 0.01
91 26 0.05
92 1 0.00
93 32 0.07
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (77 bp):
TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
ACGCCGAGGTAA
Found at i:4672236 original size:166 final size:165
Alignment explanation
Indices: 4671921--4672578 Score: 922
Period size: 165 Copynumber: 4.0 Consensus size: 165
4671911 GCTGAGGTAA
* * *
4671921 TTTCAATTTCTG--TTGTCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCA
1 TTTCAATTTCTGCCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *** * *
4671984 CGCTGAGGTATTTTCAATTT-T-TATGT-TTTAATTTCAACTTGTATTGCGAGAGGCGAGTTGAG
65 CGCTGAGGTAATTTCAATTTCTGT-TGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAG
4672046 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
129 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
*
4672083 TTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* *
4672148 ACGCTG-GGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAG
64 ACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAG
4672212 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
129 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
*
4672249 TTTCAATTTTTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *
4672314 GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCC
66 GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCC
* * *
4672379 TCAGATCACACGTCGAGGTATTTTCAATTTCCATT
131 TCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
* *
4672414 TTTCAATTTCTGCCTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
1 TTTCAATTTCTGCCTTT--CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* * ***
4672479 ACGCTGAGGTAATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAG
64 ACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAG
* ** * *
4672542 CCTCAAG--ACACGTTGAGGTATTTTTAATTTCTGTT
129 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
4672577 TT
1 TT
4672579 CAAAAAATCA
Statistics
Matches: 453, Mismatches: 33, Indels: 19
0.90 0.07 0.04
Matches are distributed among these distances:
162 12 0.03
163 28 0.06
164 66 0.15
165 192 0.42
166 83 0.18
167 72 0.16
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (165 bp):
TTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCC
TCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
Found at i:4672537 original size:72 final size:73
Alignment explanation
Indices: 4672435--4672942 Score: 381
Period size: 72 Copynumber: 6.5 Consensus size: 73
4672425 GCCTTTAAAA
*
4672435 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
4672500 CTGTTTTC
66 CTGTTTTC
* ** ** * *
4672508 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
4672572 CTGTTTTC
66 CTGTTTTC
* * * ** *
4672580 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTATTTTCAAT
*
4672645 TTCTATCTTTC
64 TTCTGT-TTTC
* ** *
4672656 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA--TTTTC
* *
4672721 AATTTATATTTTTC
61 AATTTCT-GTTTTC
* * * *
4672735 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGGGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTC-
* *
4672799 AAATCTATTTTTCAAATTCTGTTTT
61 --A---A--TTTC----TGT-TTTC
* * * ** *
4672824 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGAGGTATTTTCAAT
4672889 TTCTGTTTTTTTTTTC
64 TTCTG------TTTTC
4672905 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
4672943 TTTTTAATTT
Statistics
Matches: 342, Mismatches: 56, Indels: 64
0.74 0.12 0.14
Matches are distributed among these distances:
72 64 0.19
73 34 0.10
75 20 0.06
76 5 0.01
77 48 0.14
78 3 0.01
79 63 0.18
80 6 0.02
81 3 0.01
82 7 0.02
83 30 0.09
85 4 0.01
86 2 0.01
88 48 0.14
89 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:4672758 original size:79 final size:76
Alignment explanation
Indices: 4672434--4673152 Score: 402
Period size: 88 Copynumber: 9.0 Consensus size: 76
4672424 TGCCTTTAAA
** *
4672434 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTAATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
4672497 TTTCTGTTTTC
66 TTTCTGTTTTC
* ** * * *
4672508 --AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACACGTTGAGGTATTTTTAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
4672569 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * ** *
4672580 -AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
*
4672644 TTTCTATCTTTC
66 TTTCTGT-TTTC
* *
4672656 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTA--TTTTC
* *
4672721 AATTTATATTTTTC
64 AATTTCT-GTTTTC
* * * * * * *
4672735 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGGGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCT-GAGGTATTTTCA
** *
4672799 AAATCTATTTTTC
65 ATTTCT-GTTTTC
* ** * **
4672812 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 -AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
4672877 GCTATTTTCAATTTCTGTTTTTTTTTTC
55 GGTATTTTCAATTTCTG------TTTTC
* * * * * *
4672905 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CTCAGA--TC-AC-A-CGCTGAGGT
*
4672969 GAGTCTTTTAATTTCTGTTTTTC
58 -A-T-TTTCAATTTCTG-TTTTC
* **
4672992 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACA-TATCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGATCACACGCT-GAGGTATTTTC
**
4673053 AAAATCTGCTTTTC
64 AATTTCTG-TTTTC
** * *
4673067 AAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGA
1 ------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
4673132 GCTATTTTCAATTTCTGTTTT
55 GGTATTTTCAATTTCTGTTTT
4673153 TAATGTCTGT
Statistics
Matches: 501, Mismatches: 86, Indels: 103
0.73 0.12 0.15
Matches are distributed among these distances:
72 64 0.13
73 32 0.06
75 35 0.07
76 5 0.01
77 65 0.13
78 7 0.01
79 63 0.13
80 2 0.00
81 2 0.00
82 6 0.01
83 30 0.06
84 29 0.06
85 7 0.01
86 2 0.00
87 12 0.02
88 112 0.22
89 8 0.02
90 1 0.00
91 1 0.00
92 13 0.03
93 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
TTTCTGTTTTC
Found at i:4672960 original size:30 final size:30
Alignment explanation
Indices: 4672924--4672985 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
4672914 CAACTCATAT
4672924 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
4672954 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
4672984 TG
1 TG
4672986 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:4673086 original size:255 final size:249
Alignment explanation
Indices: 4672574--4673153 Score: 739
Period size: 255 Copynumber: 2.3 Consensus size: 249
4672564 TTTAATTTCT
* * *
4672574 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
4672639 TTCAATTTC-----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
66 TTCAATTTCTGTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
* *
4672699 TCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTG
131 TCACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTG
** ** * * * **
4672764 AGTTGGGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTATTTTTCAAATTCT
195 AGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
* *
4672819 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* *
4672883 TTCAATTTCTGTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTT
66 TTCAATTTCTGTTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTC
* * * * * * *
4672948 A-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTG
128 AGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTG
* *
4673010 CGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA
186 CGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
4673074 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
4673138 TTCAATTTCTGTTTTT
66 TTCAATTTCTGTTTTT
4673154 AATGTCTGTT
Statistics
Matches: 289, Mismatches: 30, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
244 62 0.21
245 6 0.02
249 13 0.04
250 30 0.10
251 1 0.00
252 3 0.01
253 2 0.01
254 5 0.02
255 144 0.50
256 5 0.02
257 13 0.04
258 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (249 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
TCACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGA
GTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
Found at i:4673819 original size:16 final size:16
Alignment explanation
Indices: 4673800--4673835 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
4673790 AACCTAACCC
*
4673800 AAAAAAAAA-ACAAAG
1 AAAAAAAAAGAAAAAG
4673815 AAAAAAAAAGAAAAAG
1 AAAAAAAAAGAAAAAG
4673831 AAAAA
1 AAAAA
4673836 CTTACCCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:4673850 original size:16 final size:17
Alignment explanation
Indices: 4673831--4673868 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
4673821 AAAGAAAAAG
*
4673831 AAAAACTTA-CCCCAAA
1 AAAAACTAACCCCCAAA
*
4673847 AAAACCTAACCCCCAAA
1 AAAAACTAACCCCCAAA
4673864 AAAAA
1 AAAAA
4673869 AGAAGAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.61, C:0.32, G:0.00, T:0.08
Consensus pattern (17 bp):
AAAAACTAACCCCCAAA
Found at i:4674695 original size:11 final size:11
Alignment explanation
Indices: 4674677--4674706 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
4674667 GTGTATATTG
4674677 TATATATTATA
1 TATATATTATA
*
4674688 TTTATATTATA
1 TATATATTATA
4674699 TATATATT
1 TATATATT
4674707 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:4679310 original size:42 final size:42
Alignment explanation
Indices: 4679208--4679327 Score: 143
Period size: 42 Copynumber: 2.9 Consensus size: 42
4679198 CTCTCACGAG
* * * *
4679208 CTTTTGTTTAA-CTCATATGAGTTTCCGTTCAGCTCTATTGAG
1 CTTTTGTTTAACCT-TTATGGGTTTTCGTTCAGCTCTATTGAA
* * *
4679250 CTTCTATTTAACCCTTATGGGTTTTCGTTCAGCTCTATTGAA
1 CTTTTGTTTAACCTTTATGGGTTTTCGTTCAGCTCTATTGAA
* *
4679292 CTTTTGTTTAACCTTTATGGGTTTTCATTTAGCTCT
1 CTTTTGTTTAACCTTTATGGGTTTTCGTTCAGCTCT
4679328 TATGAGCTTC
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 64 0.98
43 1 0.02
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.48
Consensus pattern (42 bp):
CTTTTGTTTAACCTTTATGGGTTTTCGTTCAGCTCTATTGAA
Found at i:4679356 original size:42 final size:42
Alignment explanation
Indices: 4679235--4679357 Score: 142
Period size: 42 Copynumber: 2.9 Consensus size: 42
4679225 TGAGTTTCCG
*
4679235 TTCAGCTCTATTGAGCTTCTA-TTTAACCCTTATGGGTTTTCG
1 TTCAGCTCTATTGAGCTTC-AGTTTAACCCTTATGGGTTTTCA
* ** *
4679277 TTCAGCTCTATTGAACTTTTGTTTAACCTTTATGGGTTTTCA
1 TTCAGCTCTATTGAGCTTCAGTTTAACCCTTATGGGTTTTCA
* * *
4679319 TTTAGCTCT-TATGAGCTTCAGTTCAACCCTTACGGGTTT
1 TTCAGCTCTAT-TGAGCTTCAGTTTAACCCTTATGGGTTT
4679358 CTGTTTAGCA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 66 0.99
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (42 bp):
TTCAGCTCTATTGAGCTTCAGTTTAACCCTTATGGGTTTTCA
Found at i:4681726 original size:24 final size:26
Alignment explanation
Indices: 4681698--4681758 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 26
4681688 TTTAATTTGA
*
4681698 TATTTAACAATTTA-ATATAT-TATT
1 TATTTAACAATTTATATATATATATG
4681722 TATTTAAC---TTATATATATATATG
1 TATTTAACAATTTATATATATATATG
4681745 TATCTTAACAATTT
1 TAT-TTAACAATTT
4681759 TTTAATGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
21 3 0.10
22 6 0.20
23 6 0.20
24 13 0.43
27 2 0.07
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (26 bp):
TATTTAACAATTTATATATATATATG
Done.