Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 182 of 427
Found at i:50241272 original size:83 final size:81
Alignment explanation
Indices: 50241108--50241332 Score: 260
Period size: 83 Copynumber: 2.8 Consensus size: 81
50241098 TATTCGGATG
* * * * *
50241108 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TTCCTATATCTGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTTTCCTATACCCGGGCTAAGTCCCAAAGGC
*
50241172 ATCTGTGCTAGTAACT
66 ATCTGTGATAGTAACT
* *
50241188 ATATCCGGGCGAAGTTCCGAAGGCATTTGTGCGAGTACTTGCTATACCCGGGCTAAGTCCCAAAG
1 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGT--TTCCTATACCCGGGCTAAGTCCCAAAG
* *
50241253 GCATTTGTGATAGTGACT
64 GCATCTGTGATAGTAACT
* * * * *
50241271 ATATCCGGG-GAAAGACCCGAAGGCATTTGTGCGAG-TTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCG-AAGTCCCGAAGGCATTTGTGCGAGTTTCCTATACCCGGGCTAAGTCCCAAAGG
50241333 TACTTGGGTT
Statistics
Matches: 126, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
79 14 0.11
80 42 0.33
82 1 0.01
83 69 0.55
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTTTCCTATACCCGGGCTAAGTCCCAAAGGC
ATCTGTGATAGTAACT
Found at i:50243095 original size:27 final size:27
Alignment explanation
Indices: 50243056--50243216 Score: 180
Period size: 27 Copynumber: 6.0 Consensus size: 27
50243046 CAAATTAATT
* *
50243056 AAATGACTATTTTGCCTTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* * * *
50243083 AAGTGACAGTTTTGCCTTTATGTTGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
50243110 AAATAACTGTTTTACCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
50243137 AAATGATTGTTTTGCCTTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
50243164 AAATAACTATTTTGCCCTTATAG-GGTA
1 AAATGACTGTTTTGCCCTTAT-GTGGTA
* *
50243191 AGATGACTGTTTTGCCCTTAAGTGGT
1 AAATGACTGTTTTGCCCTTATGTGGT
50243217 GTATACATAT
Statistics
Matches: 110, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 1 0.01
27 108 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.42
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATGTGGTA
Found at i:50243200 original size:81 final size:81
Alignment explanation
Indices: 50243056--50243216 Score: 200
Period size: 81 Copynumber: 2.0 Consensus size: 81
50243046 CAAATTAATT
* * * *
50243056 AAATGACTATTTTGCCTTTATGTGGTAAAGTGACAGTTTTGCCTTTATGTTGTAAAATAACTGTT
1 AAATGACTATTTTGCCTTTATGTGGTAAAATAACAGTTTTGCCCTTATGTGGTAAAATAACTGTT
*
50243121 TTACCCTTATGTGGTA
66 TTACCCTTAAGTGGTA
* * * *
50243137 AAATGATTGTTTTGCCTTTATGTGGTAAAATAACTA-TTTTGCCCTTATAG-GGTAAGATGACTG
1 AAATGACTATTTTGCCTTTATGTGGTAAAATAAC-AGTTTTGCCCTTAT-GTGGTAAAATAACTG
*
50243200 TTTTGCCCTTAAGTGGT
64 TTTTACCCTTAAGTGGT
50243217 GTATACATAT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
81 66 0.97
82 2 0.03
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.42
Consensus pattern (81 bp):
AAATGACTATTTTGCCTTTATGTGGTAAAATAACAGTTTTGCCCTTATGTGGTAAAATAACTGTT
TTACCCTTAAGTGGTA
Found at i:50257652 original size:13 final size:13
Alignment explanation
Indices: 50257634--50257658 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50257624 TATGTGATAT
50257634 GTGTGAAAATTTC
1 GTGTGAAAATTTC
50257647 GTGTGAAAATTT
1 GTGTGAAAATTT
50257659 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:50258911 original size:42 final size:43
Alignment explanation
Indices: 50258777--50258931 Score: 185
Period size: 42 Copynumber: 3.7 Consensus size: 43
50258767 TGTGTTATCG
* *
50258777 TGTAAGACCATGTCTGGGACATTGGCATTGAT-TCATGA-TTCA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATC-TGATTTTA
* * *
50258819 CGTGTAAGACCATGTTTGGGACATTGGCATC--TATATGATTTTG
1 --TGTAAGACCATGTCTGGGACATTGGCATCGATATCTGATTTTA
* *
50258862 TGTAAGACCCTGTCTGGGACAATGG-ATCGATATCTGATTTTA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATCTGATTTTA
50258904 TGTAAGACCATGTCTGGGACATTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
50258932 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 12, Indels: 11
0.80 0.10 0.09
Matches are distributed among these distances:
40 3 0.03
41 22 0.23
42 37 0.39
43 5 0.05
44 27 0.29
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATCTGATTTTA
Found at i:50260855 original size:27 final size:27
Alignment explanation
Indices: 50260752--50260860 Score: 121
Period size: 27 Copynumber: 4.1 Consensus size: 27
50260742 CATTGCTGCT
* * *
50260752 AGAACAGAT-GATGTGACAGAGTCACC
1 AGAACAGATAAATGTGGCAGAGCCACC
*
50260778 AGAACAGATAATTGTGGCAGAGCCACC
1 AGAACAGATAAATGTGGCAGAGCCACC
* *
50260805 AGAACAGATATATGTGGTAGAGCCACC
1 AGAACAGATAAATGTGGCAGAGCCACC
* * * *
50260832 AGATCATATAAATATGGCATAGCCACC
1 AGAACAGATAAATGTGGCAGAGCCACC
50260859 AG
1 AG
50260861 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
26 9 0.13
27 60 0.87
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (27 bp):
AGAACAGATAAATGTGGCAGAGCCACC
Found at i:50263619 original size:46 final size:46
Alignment explanation
Indices: 50263552--50263723 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
50263542 TGTAACCCGC
*
50263552 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
50263598 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
50263648 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
50263691 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
50263724 TGGATGCTCA
Statistics
Matches: 108, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 60 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:50263672 original size:93 final size:93
Alignment explanation
Indices: 50263560--50263730 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
50263550 GCCCATAAGT
* *
50263560 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50263625 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
50263653 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
50263718 CGAGTTTGGATGC
66 CGAGTTCGGATGC
50263731 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50265048 original size:24 final size:24
Alignment explanation
Indices: 50265021--50265097 Score: 136
Period size: 24 Copynumber: 3.2 Consensus size: 24
50265011 ATATTACAGT
*
50265021 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
50265045 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
50265069 TCTCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
50265093 TCTCC
1 TCTCC
50265098 TGACTGACTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.22, C:0.43, G:0.03, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:50271402 original size:27 final size:27
Alignment explanation
Indices: 50271348--50271456 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 27
50271338 AGCATTGCTG
* * *
50271348 CCAGAACAGATGA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
50271374 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
50271401 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * * *
50271428 CCAGATCAGATAAATGTGCCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
50271455 CC
1 CC
50271457 TGGACACTTC
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 14 0.19
27 58 0.79
28 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:50271431 original size:54 final size:53
Alignment explanation
Indices: 50271348--50271456 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 53
50271338 AGCATTGCTG
* * *
50271348 CCAGAACAGATGATGTGACAGAGTCACCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATGATGTGACAGAGCCACCAGAACAGATAAATGTGCCAGAGCCA
* * * *
50271401 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAATGTGCCATAGCCA
1 CCAGAACAGAT-GATGTGACAGAGCCACCAGAACAGATAAATGTGCCAGAGCCA
50271455 CC
1 CC
50271457 TGGACACTTC
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 11 0.23
54 37 0.77
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.16
Consensus pattern (53 bp):
CCAGAACAGATGATGTGACAGAGCCACCAGAACAGATAAATGTGCCAGAGCCA
Found at i:50272958 original size:27 final size:27
Alignment explanation
Indices: 50272882--50272971 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
50272872 TTTAGTTTAC
* *
50272882 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
50272909 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
50272936 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
50272963 TAAAATTAC
1 TAAAATTAC
50272972 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:50272981 original size:54 final size:54
Alignment explanation
Indices: 50272882--50272988 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
50272872 TTTAGTTTAC
* * *
50272882 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
50272936 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
50272989 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:50272996 original size:27 final size:28
Alignment explanation
Indices: 50272966--50273027 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 28
50272956 CGACTTGTAA
50272966 AATTACCAAAGT-ACCCCCGATTTACAG
1 AATTACCAAAGTAACCCCCGATTTACAG
** *
50272993 AATTACC-ATTTAACCCCCGATTTACAT
1 AATTACCAAAGTAACCCCCGATTTACAG
50273020 AATTACCA
1 AATTACCA
50273028 TTTTACCCCC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.37, C:0.29, G:0.06, T:0.27
Consensus pattern (28 bp):
AATTACCAAAGTAACCCCCGATTTACAG
Found at i:50273028 original size:27 final size:27
Alignment explanation
Indices: 50272978--50273198 Score: 120
Period size: 27 Copynumber: 7.8 Consensus size: 27
50272968 TTACCAAAGT
50272978 ACCCCCGATTTACAGAATTACCATTTA
1 ACCCCCGATTTACAGAATTACCATTTA
* *
50273005 ACCCCCGATTTACATAATTACCATTTT
1 ACCCCCGATTTACAGAATTACCATTTA
* * * *
50273032 ACCCCCGTTTTACCCTCGACTTACAGAATTACCGTTTT
1 ACCCCCG-ATT----T--AC--AG--AATTACCATTTA
* *
50273070 ACCCTCGATTTACAGAATTA-CAGTTTT
1 ACCCCCGATTTACAGAATTACCA-TTTA
* * * *
50273097 ACCCTCGATTTATAGAATTACTATTTT
1 ACCCCCGATTTACAGAATTACCATTTA
* ** * *
50273124 ACTCTTGATTTACAGAATTACTATTTT
1 ACCCCCGATTTACAGAATTACCATTTA
* * * *
50273151 ACCCTCGATTTACAAAATTACTATTTT
1 ACCCCCGATTTACAGAATTACCATTTA
* *
50273178 ACCCTCGATTTACAAAATTAC
1 ACCCCCGATTTACAGAATTAC
50273199 TAAAATACCC
Statistics
Matches: 164, Mismatches: 17, Indels: 26
0.79 0.08 0.13
Matches are distributed among these distances:
26 1 0.01
27 133 0.81
28 3 0.02
29 1 0.01
31 2 0.01
32 1 0.01
33 1 0.01
34 2 0.01
36 1 0.01
37 2 0.01
38 17 0.10
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (27 bp):
ACCCCCGATTTACAGAATTACCATTTA
Found at i:50273035 original size:54 final size:54
Alignment explanation
Indices: 50272977--50273198 Score: 203
Period size: 54 Copynumber: 3.9 Consensus size: 54
50272967 ATTACCAAAG
* * *
50272977 TACCCCCGATTTACAGAATTACCATTTAACCCCCGATTTACATAATTACCATTT
1 TACCCCCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
*
50273031 TACCCCCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTA-CAGTT
1 TACCCCCG----A---T----TTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCA-TT
50273095 T
54 T
* * * * * *
50273096 TACCCTCGATTTATAGAATTACTATTTTACTCTTGATTTACAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
* * * *
50273150 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTAC
50273199 TAAAATACCC
Statistics
Matches: 139, Mismatches: 16, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
54 88 0.63
55 1 0.01
58 2 0.01
61 2 0.01
64 2 0.01
65 44 0.32
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (54 bp):
TACCCCCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
Found at i:50273056 original size:38 final size:38
Alignment explanation
Indices: 50273000--50273082 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 38
50272990 CAGAATTACC
* *
50273000 ATTTAACCCCCGATTTACATAATTACCATTTTACCCCCG
1 ATTT-ACCCCCGACTTACAGAATTACCATTTTACCCCCG
* * * *
50273039 TTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCG
1 ATTTACCCCCGACTTACAGAATTACCATTTTACCCCCG
50273077 ATTTAC
1 ATTTAC
50273083 AGAATTACAG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
38 34 0.92
39 3 0.08
ACGTcount: A:0.25, C:0.31, G:0.07, T:0.36
Consensus pattern (38 bp):
ATTTACCCCCGACTTACAGAATTACCATTTTACCCCCG
Found at i:50273081 original size:65 final size:65
Alignment explanation
Indices: 50272977--50273100 Score: 178
Period size: 65 Copynumber: 1.9 Consensus size: 65
50272967 ATTACCAAAG
* *
50272977 TACCCCCGATTTACAGAATTACCATTTAACCCCCGATTTACATAATTACCA-TTTTACCCCCGTT
1 TACCCCCGACTTACAGAATTACCATTTAACCCCCGATTTACAGAATTA-CAGTTTTACCCCCGTT
50273041 T
65 T
* * * *
50273042 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACAGTTTTACCC
1 TACCCCCGACTTACAGAATTACCATTTAACCCCCGATTTACAGAATTACAGTTTTACCC
50273101 TCGATTTATA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 2 0.04
65 50 0.96
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (65 bp):
TACCCCCGACTTACAGAATTACCATTTAACCCCCGATTTACAGAATTACAGTTTTACCCCCGTTT
Found at i:50273199 original size:27 final size:27
Alignment explanation
Indices: 50273039--50273200 Score: 236
Period size: 27 Copynumber: 6.0 Consensus size: 27
50273029 TTTACCCCCG
* **
50273039 TTTTACCCTCGACTTACAGAATTACCG
1 TTTTACCCTCGATTTACAGAATTACTA
50273066 TTTTACCCTCGATTTACAGAATTAC-A
1 TTTTACCCTCGATTTACAGAATTACTA
*
50273092 GTTTTACCCTCGATTTATAGAATTACTA
1 -TTTTACCCTCGATTTACAGAATTACTA
* *
50273120 TTTTACTCTTGATTTACAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
*
50273147 TTTTACCCTCGATTTACAAAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
*
50273174 TTTTACCCTCGATTTACAAAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
50273201 AAATACCCTT
Statistics
Matches: 124, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
27 123 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAGAATTACTA
Found at i:50273207 original size:27 final size:27
Alignment explanation
Indices: 50273069--50273397 Score: 143
Period size: 27 Copynumber: 12.1 Consensus size: 27
50273059 ATTACCGTTT
* ***
50273069 TACCCTCGATTTACAGAATTAC-AGTTT
1 TACCCTCGATTTACAAAATTACTA-AAA
* * ***
50273096 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * * ***
50273123 TACTCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
***
50273150 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
50273177 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
50273204 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* **
50273231 TACCC-CTAGTTTGTAAAATTA-TCAAAA
1 TACCCTCGA-TTTACAAAATTACT-AAAA
* * *** **
50273258 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
50273285 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
50273312 TACCC-CTGATTTACAAAGTTAC-AAAA
1 TACCCTC-GATTTACAAAATTACTAAAA
*
50273338 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
50273367 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
50273394 TACC
1 TACC
50273398 TTTGGTTTGT
Statistics
Matches: 252, Mismatches: 35, Indels: 30
0.79 0.11 0.09
Matches are distributed among these distances:
26 14 0.06
27 215 0.85
28 12 0.05
29 11 0.04
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:50273235 original size:54 final size:54
Alignment explanation
Indices: 50273177--50273316 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 54
50273167 ATTACTATTT
* **
50273177 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
50273231 TACCC-CTAGTTTGTAAAATTA-TCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACT-AAAATACCCTTAGTTTGTAAAATTACCAAAA
*
50273285 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACTAAAATACCC
50273317 CTGATTTACA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
53 2 0.03
54 70 0.96
55 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:50273235 original size:81 final size:80
Alignment explanation
Indices: 50273069--50273333 Score: 187
Period size: 81 Copynumber: 3.3 Consensus size: 80
50273059 ATTACCGTTT
* * *** * *
50273069 TACCCTCGATTTACAGAATTAC-AGTTTTACCCTCGATTTATAGAATTACTATTTTACTCTT-GA
1 TACCC-CGATTTACAAAATTACTA-TTTTACCCTCGATTTATAAAATTACTAAAATACCCTTAGT
* ***
50273132 TT-TACAGAATTACTATTT
64 TTGTA-A-AATTACCAAAA
*
50273150 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAGTT
1 TACCC-CGATTTACAAAATTACTATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTAGTT
50273215 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* ** *** * * * * ** * *
50273231 TACCCCTAGTTTGTAAAATTA-TCAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCCGA-TTTACAAAATTACT-ATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTAGT
50273295 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
*
50273312 TACCCCTGATTTACAAAGTTAC
1 TACCCC-GATTTACAAAATTAC
50273334 AAAATACCCT
Statistics
Matches: 146, Mismatches: 31, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
80 3 0.02
81 135 0.92
82 6 0.04
83 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.36
Consensus pattern (80 bp):
TACCCCGATTTACAAAATTACTATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTAGTTT
GTAAAATTACCAAAA
Found at i:50273402 original size:27 final size:27
Alignment explanation
Indices: 50273354--50273405 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
50273344 TGACTTTCTA
50273354 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
50273381 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
50273406 GTTGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:50273535 original size:27 final size:28
Alignment explanation
Indices: 50273457--50273536 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 28
50273447 ATGCCCCTAT
* *
50273457 TAGGGTAAAGTGACCGTAA-AGCCCCTG
1 TAGGGTAAAATGACCGTAATAGCCCTTG
50273484 TAGGGTAAAATGACCGTAATA-CCCTTG
1 TAGGGTAAAATGACCGTAATAGCCCTTG
*
50273511 TATGGTAAAATGA-CG-AATATGCCCTT
1 TAGGGTAAAATGACCGTAATA-GCCCTT
50273537 ATGTTCCGTA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 4 0.09
26 2 0.04
27 40 0.85
28 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.25
Consensus pattern (28 bp):
TAGGGTAAAATGACCGTAATAGCCCTTG
Found at i:50274730 original size:25 final size:25
Alignment explanation
Indices: 50274684--50274731 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
50274674 TTATAATATG
* * * *
50274684 AAAATGACCGTTTTGCCTCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
50274709 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
50274732 GTTTATACAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:50274795 original size:11 final size:11
Alignment explanation
Indices: 50274779--50274850 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
50274769 CATGACATGT
50274779 ATGATATGCAC
1 ATGATATGCAC
*
50274790 ATGATATG--T
1 ATGATATGCAC
50274799 ATGATATGCAC
1 ATGATATGCAC
* **
50274810 ATGACA--CGT
1 ATGATATGCAC
50274819 ATGATATGCAC
1 ATGATATGCAC
*
50274830 ATGATATG--T
1 ATGATATGCAC
50274839 ATGATATGCAC
1 ATGATATGCAC
50274850 A
1 A
50274851 CGAGATGTTA
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
9 22 0.49
11 23 0.51
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:50274815 original size:40 final size:40
Alignment explanation
Indices: 50274768--50274850 Score: 157
Period size: 40 Copynumber: 2.1 Consensus size: 40
50274758 ATTTTGATAA
*
50274768 ACATGACATGTATGATATGCACATGATATGTATGATATGC
1 ACATGACACGTATGATATGCACATGATATGTATGATATGC
50274808 ACATGACACGTATGATATGCACATGATATGTATGATATGC
1 ACATGACACGTATGATATGCACATGATATGTATGATATGC
50274848 ACA
1 ACA
50274851 CGAGATGTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (40 bp):
ACATGACACGTATGATATGCACATGATATGTATGATATGC
Found at i:50274858 original size:20 final size:20
Alignment explanation
Indices: 50274768--50274850 Score: 139
Period size: 20 Copynumber: 4.2 Consensus size: 20
50274758 ATTTTGATAA
*
50274768 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
50274788 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
50274808 ACATGACACGTATGATATGC
1 ACATGATATGTATGATATGC
50274828 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
50274848 ACA
1 ACA
50274851 CGAGATGTTA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:50274993 original size:24 final size:24
Alignment explanation
Indices: 50274904--50275021 Score: 154
Period size: 23 Copynumber: 5.0 Consensus size: 24
50274894 GAGGAAGTGC
*
50274904 AAAAGGGCTTATGCACCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
50274928 -AAAGGGCTTATGCCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
50274951 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
50274974 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
50274998 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50275022 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
23 49 0.58
24 19 0.22
25 17 0.20
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:50281057 original size:30 final size:30
Alignment explanation
Indices: 50281023--50281119 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
50281013 AGCTCACTCC
50281023 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
50281053 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
50281083 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
50281113 TAGCTCA
1 TAGCTCA
50281120 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:50283826 original size:9 final size:10
Alignment explanation
Indices: 50283819--50283875 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
50283809 AAGAGAAAAC
50283819 AAAGAAAAGA
1 AAAGAAAAGA
50283829 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
50283841 AAAGAAGA-A
1 AAAGAAAAGA
50283850 AAAGAAAATGA
1 AAAGAAAA-GA
50283861 AATA-AAAAGA
1 AA-AGAAAAGA
50283871 AAAGA
1 AAAGA
50283876 GAGGCAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
9 9 0.23
10 9 0.23
11 15 0.38
12 6 0.15
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:50283842 original size:21 final size:20
Alignment explanation
Indices: 50283808--50283875 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
50283798 ACATTCTTGT
50283808 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAA-AAAAGA
*
50283829 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAAGCAAAAAAAG-A
* *
50283850 AAAGAAAATGAAATAAAAAGA
1 AAAGAAAAAGCAA-AAAAAGA
50283871 AAAGA
1 AAAGA
50283876 GAGGCAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 8 0.20
21 27 0.68
22 5 0.12
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (20 bp):
AAAGAAAAAGCAAAAAAAGA
Found at i:50283843 original size:6 final size:5
Alignment explanation
Indices: 50283819--50283875 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
50283809 AAGAGAAAAC
*
50283819 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
50283866 AAAGA AAAGA
1 AAAGA AAAGA
50283876 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:50283850 original size:15 final size:14
Alignment explanation
Indices: 50283819--50283875 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
50283809 AAGAGAAAAC
50283819 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
50283835 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
50283850 AAAGAAAATGAAATAA
1 AAAGAAAA-G-AAGAA
50283866 AAAGAAAAGA
1 AAAGAAAAGA
50283876 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:50283966 original size:18 final size:18
Alignment explanation
Indices: 50283938--50283993 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
50283928 AAAGCCTTTG
50283938 AAAAGAAAAATGAAAAAGA
1 AAAAG-AAAATGAAAAAGA
* **
50283957 AAAAGAAAATGAGATTGA
1 AAAAGAAAATGAAAAAGA
*
50283975 AAAAGAGAATG-AAAAGA
1 AAAAGAAAATGAAAAAGA
50283992 AA
1 AA
50283994 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 5 0.17
18 20 0.67
19 5 0.17
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.09
Consensus pattern (18 bp):
AAAAGAAAATGAAAAAGA
Found at i:50283978 original size:13 final size:12
Alignment explanation
Indices: 50283946--50283989 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
50283936 TGAAAAGAAA
*
50283946 AATGAAAAAGAA
1 AATGAAAAAGAG
* *
50283958 AAAGAAAATGAG
1 AATGAAAAAGAG
*
50283970 ATTGAAAAAGAG
1 AATGAAAAAGAG
50283982 AATGAAAA
1 AATGAAAA
50283990 GAAATTTGAG
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.20, T:0.11
Consensus pattern (12 bp):
AATGAAAAAGAG
Found at i:50283989 original size:30 final size:31
Alignment explanation
Indices: 50283955--50284025 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 31
50283945 AAATGAAAAA
*
50283955 GAAAAAGAAA-ATGAGATTGAAAAAG-AGAAT
1 GAAAAAGAAATATGAGAGTGAAAAAGAAG-AT
*
50283985 G-AAAAGAAATTTGAGAGTGAAAAAGAAGAT
1 GAAAAAGAAATATGAGAGTGAAAAAGAAGAT
50284015 GAAAAAGAAAT
1 GAAAAAGAAAT
50284026 TGAAACAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
29 8 0.22
30 17 0.47
31 11 0.31
ACGTcount: A:0.62, C:0.00, G:0.24, T:0.14
Consensus pattern (31 bp):
GAAAAAGAAATATGAGAGTGAAAAAGAAGAT
Found at i:50283998 original size:24 final size:23
Alignment explanation
Indices: 50283936--50283995 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
50283926 AAAAAGCCTT
*
50283936 TGAAAAGAAAAATGAAAAAGAAAA
1 TGAAAAG-AAATTGAAAAAGAAAA
* * *
50283960 AGAAAATGAGATTGAAAAAGAGAA
1 TGAAAA-GAAATTGAAAAAGAAAA
50283984 TGAAAAGAAATT
1 TGAAAAGAAATT
50283996 TGAGAGTGAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
23 5 0.17
24 23 0.79
25 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.20, T:0.13
Consensus pattern (23 bp):
TGAAAAGAAATTGAAAAAGAAAA
Found at i:50286153 original size:30 final size:30
Alignment explanation
Indices: 50286119--50286215 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
50286109 AGCTCACTCC
50286119 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
50286149 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
50286179 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
50286209 TAGCTCA
1 TAGCTCA
50286216 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:50289222 original size:40 final size:40
Alignment explanation
Indices: 50289163--50289304 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
50289153 AAATTGAATG
* * *
50289163 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
50289203 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
50289243 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
50289283 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
50289305 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:50289305 original size:40 final size:39
Alignment explanation
Indices: 50289202--50289330 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
50289192 TGCTGGAAAT
* * *
50289202 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
50289242 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
50289282 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
50289322 TATATCCGG
1 TATATCCGG
50289331 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:50299714 original size:40 final size:40
Alignment explanation
Indices: 50299606--50299815 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
50299596 CGGGATTTAA
* * * * *
50299606 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
50299646 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
50299686 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
50299726 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
50299766 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
50299806 CCGGATATAT
1 CCGGATATAT
50299816 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:50304868 original size:16 final size:16
Alignment explanation
Indices: 50304844--50304874 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50304834 CATCTTCACT
50304844 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
50304860 TACTTACTTACTTAA
1 TACTCACTTACTTAA
50304875 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:50304880 original size:20 final size:20
Alignment explanation
Indices: 50304841--50304880 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
50304831 AAACATCTTC
* *
50304841 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
50304861 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
50304881 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:50305256 original size:55 final size:53
Alignment explanation
Indices: 50305138--50305320 Score: 172
Period size: 55 Copynumber: 3.4 Consensus size: 53
50305128 TGTCTCGACT
* * *
50305138 TGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCA
1 TGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATGCCATGACA
* * * **
50305191 TGGTCTTACATGGGA-CTTTTGCCTTATAGTAACTTATCAATGCCATTTCATGACA
1 TGGTCTTACATGGGATC-CTTGCCTTAT-G-AACTCACCAATGCCATGCCATGACA
* * * * *
50305246 TGGTCTTACATGGTATCCTTGCATTA-GAAACCTTACCAATTGCCATGCCTTGGCA
1 TGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TGCCATGCCATGACA
*
50305301 TGGTCTTACATGGTATCCTT
1 TGGTCTTACATGGGATCCTT
50305321 AAACCCTAAT
Statistics
Matches: 107, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
52 1 0.01
53 26 0.24
54 8 0.07
55 71 0.66
56 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (53 bp):
TGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATGCCATGACA
Found at i:50315389 original size:24 final size:24
Alignment explanation
Indices: 50315357--50315419 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
50315347 AGTCTCAAAT
50315357 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
50315381 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
50315405 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
50315420 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:50317235 original size:27 final size:27
Alignment explanation
Indices: 50317192--50317352 Score: 207
Period size: 27 Copynumber: 6.0 Consensus size: 27
50317182 ATATGCATAC
* *
50317192 ACCACATAAGGGCAAAACAATCATCTT
1 ACCACATAAGGGCAAAACAGTCATTTT
* * *
50317219 ACTC-TATAAGGGCAAAATAGTTATTTT
1 AC-CACATAAGGGCAAAACAGTCATTTT
*
50317246 ACCACATAAGGGCAAAACTGTCATTTT
1 ACCACATAAGGGCAAAACAGTCATTTT
* *
50317273 ACCACATAAAGGCAAAACAGTTATTTT
1 ACCACATAAGGGCAAAACAGTCATTTT
*
50317300 ACCACATAAGGGCAAAACAATCATTTT
1 ACCACATAAGGGCAAAACAGTCATTTT
* *
50317327 ACCACATAAAGGCAAAATAGTCATTT
1 ACCACATAAGGGCAAAACAGTCATTT
50317353 AATTAATTTG
Statistics
Matches: 114, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 112 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.25
Consensus pattern (27 bp):
ACCACATAAGGGCAAAACAGTCATTTT
Found at i:50317287 original size:54 final size:54
Alignment explanation
Indices: 50317192--50317352 Score: 243
Period size: 54 Copynumber: 3.0 Consensus size: 54
50317182 ATATGCATAC
* * *
50317192 ACCACATAAGGGCAAAACAATCATCTTACTC-TATAAGGGCAAAATAGTTATTTT
1 ACCACATAAGGGCAAAACAATCATTTTAC-CACATAAAGGCAAAATAGTTATTTT
** *
50317246 ACCACATAAGGGCAAAACTGTCATTTTACCACATAAAGGCAAAACAGTTATTTT
1 ACCACATAAGGGCAAAACAATCATTTTACCACATAAAGGCAAAATAGTTATTTT
*
50317300 ACCACATAAGGGCAAAACAATCATTTTACCACATAAAGGCAAAATAGTCATTT
1 ACCACATAAGGGCAAAACAATCATTTTACCACATAAAGGCAAAATAGTTATTT
50317353 AATTAATTTG
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 95 0.99
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.25
Consensus pattern (54 bp):
ACCACATAAGGGCAAAACAATCATTTTACCACATAAAGGCAAAATAGTTATTTT
Found at i:50326175 original size:27 final size:27
Alignment explanation
Indices: 50326099--50326188 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
50326089 TTTAGTTTAC
* *
50326099 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
50326126 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
50326153 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
50326180 TAAAATTAC
1 TAAAATTAC
50326189 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:50326224 original size:27 final size:27
Alignment explanation
Indices: 50326202--50326512 Score: 406
Period size: 27 Copynumber: 11.5 Consensus size: 27
50326192 AGTACCCCCA
* * *
50326202 ATTTACAGAATTATCGTTTTACCCCCG
1 ATTTACAAAATTACCGTTTTACCCTCG
*
50326229 ATTTACATAATTACCGTTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCG
50326256 ATTTACAAAATTACCGTTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCG
* *
50326283 ATTTACAGAATTACTGTTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCG
*
50326310 ATTTATAAAATTACCGTTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCG
* *
50326337 ATTTACAGAATTACTGTTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCG
* *
50326364 ATTTATAAAATTACCGTTTTACCCTTG
1 ATTTACAAAATTACCGTTTTACCCTCG
* *
50326391 ATTTACAGAATTACTGTTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCG
* *
50326418 ATTTACAAAATTATCGTTTTACCATCG
1 ATTTACAAAATTACCGTTTTACCCTCG
* * ** * * *
50326445 ATTTATAGAATTACTATTTTTCTCTTG
1 ATTTACAAAATTACCGTTTTACCCTCG
**
50326472 ATTTACAAAATTACTATTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCG
50326499 ATTTACAAAATTAC
1 ATTTACAAAATTAC
50326513 AGAAATACCC
Statistics
Matches: 246, Mismatches: 38, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 246 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
ATTTACAAAATTACCGTTTTACCCTCG
Found at i:50326521 original size:27 final size:27
Alignment explanation
Indices: 50326472--50326576 Score: 88
Period size: 27 Copynumber: 3.9 Consensus size: 27
50326462 TTTTCTCTTG
* *** *
50326472 ATTTACAAAATTACTATTTTACCCTCG
1 ATTTACAAAATTACCAAAATACCCTCA
50326499 ATTTACAAAATTA-CAGAAATACCCTCA
1 ATTTACAAAATTACCA-AAATACCCTCA
**
50326526 ATTTGTAAAATTACCAAAATACCC-CTA
1 ATTTACAAAATTACCAAAATACCCTC-A
* **
50326553 GTTTGTAAAATTACCAAAATACCC
1 ATTTACAAAATTACCAAAATACCC
50326577 ATGGTTTGAA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.03
27 63 0.94
28 2 0.03
ACGTcount: A:0.42, C:0.22, G:0.05, T:0.31
Consensus pattern (27 bp):
ATTTACAAAATTACCAAAATACCCTCA
Found at i:50326539 original size:54 final size:54
Alignment explanation
Indices: 50326202--50326512 Score: 460
Period size: 54 Copynumber: 5.8 Consensus size: 54
50326192 AGTACCCCCA
* * * * *
50326202 ATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCG
50326256 ATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCG
*
50326310 ATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCG
* *
50326364 ATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCG
* * * * * * *
50326418 ATTTACAAAATTATCGTTTTACCATCGATTTATAGAATTACTATTTTTCTCTTG
1 ATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCG
** *
50326472 ATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTAC
1 ATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
50326513 AGAAATACCC
Statistics
Matches: 235, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 235 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (54 bp):
ATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCG
Found at i:50326563 original size:54 final size:53
Alignment explanation
Indices: 50326505--50326631 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
50326495 CTCGATTTAC
* **
50326505 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
50326559 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
50326613 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
50326632 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
53 4 0.06
54 55 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:50326583 original size:27 final size:27
Alignment explanation
Indices: 50326505--50326603 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
50326495 CTCGATTTAC
*
50326505 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
*
50326532 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
50326559 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
50326586 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
50326604 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 62 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:50326616 original size:27 final size:27
Alignment explanation
Indices: 50326530--50326649 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
50326520 CCCTCAATTT
**
50326530 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
50326557 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
50326584 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
50326611 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
50326638 GTAAAATTACCA
1 GTAAAATTACCA
50326650 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:50329327 original size:18 final size:18
Alignment explanation
Indices: 50329304--50329349 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
50329294 GTCATGTGGG
50329304 CCACACGGGCGTGTAGGC
1 CCACACGGGCGTGTAGGC
50329322 CCACACGGGCGTGTAGGC
1 CCACACGGGCGTGTAGGC
50329340 CCACACGGGC
1 CCACACGGGC
50329350 AAACAACATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.17, C:0.37, G:0.37, T:0.09
Consensus pattern (18 bp):
CCACACGGGCGTGTAGGC
Found at i:50336788 original size:18 final size:19
Alignment explanation
Indices: 50336760--50336796 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
50336750 TAAAAATTGG
50336760 TAAATAATATTTTGAAAAA
1 TAAATAATATTTTGAAAAA
*
50336779 TAAA-AATATTTTTAAAAA
1 TAAATAATATTTTGAAAAA
50336797 ATTTAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
TAAATAATATTTTGAAAAA
Found at i:50336791 original size:19 final size:19
Alignment explanation
Indices: 50336760--50336798 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
50336750 TAAAAATTGG
*
50336760 TAAATAATATTTTGAAAAA
1 TAAATAATATTTTAAAAAA
50336779 TAAA-AATATTTTTAAAAAA
1 TAAATAATA-TTTTAAAAAA
50336798 T
1 T
50336799 TTAATTTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
TAAATAATATTTTAAAAAA
Found at i:50337145 original size:2 final size:2
Alignment explanation
Indices: 50337138--50337176 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
50337128 TTGAAAGCTA
50337138 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
50337177 ATTTGCTTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:50344265 original size:17 final size:19
Alignment explanation
Indices: 50344239--50344275 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
50344229 TGTAAAACCC
50344239 ATGAGTATGAACT-TTGGT
1 ATGAGTATGAACTCTTGGT
*
50344257 ATGAG-ATGATCTCTTGGT
1 ATGAGTATGAACTCTTGGT
50344275 A
1 A
50344276 AAAATGCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.27, C:0.08, G:0.27, T:0.38
Consensus pattern (19 bp):
ATGAGTATGAACTCTTGGT
Found at i:50346415 original size:40 final size:40
Alignment explanation
Indices: 50346364--50346526 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
50346354 GATAACCGGA
* * * *
50346364 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAACCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCAGG
* * * * *
50346404 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCAGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCAGG
50346444 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCAGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCAGG
*
50346484 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCAGG
50346523 CTAA
1 CTAA
50346527 ATTTCGAAGA
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 8 0.08
40 96 0.91
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCAGG
Found at i:50351542 original size:123 final size:121
Alignment explanation
Indices: 50351324--50351543 Score: 289
Period size: 123 Copynumber: 1.8 Consensus size: 121
50351314 GAATTATGTG
* * * *
50351324 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * **
50351389 TAAGTCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
50351445 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
50351509 GGCTAAGCCCGAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCGAAGACAATTATGCTAGAAATTATA
50351544 TCCGGGTTAA
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
121 16 0.19
123 64 0.77
124 3 0.04
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (121 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:50351568 original size:40 final size:40
Alignment explanation
Indices: 50351502--50351652 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
50351492 AAATTGAATG
* *
50351502 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
50351541 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
50351581 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
50351621 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
50351653 ACATGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 16 0.18
40 72 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:50351636 original size:80 final size:79
Alignment explanation
Indices: 50351504--50351652 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
50351494 ATTGAATGAT
*
50351504 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATT
1 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
50351569 GTGCTAGTGGCTAC
66 GTGCTAGTGGCTAC
* * * *
50351583 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
50351646 TTTGTGC
63 ATTGTGC
50351653 ACATGGTTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 16 0.26
80 45 0.74
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (79 bp):
ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGCTAC
Found at i:50351667 original size:80 final size:79
Alignment explanation
Indices: 50351502--50351668 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
50351492 AAATTGAATG
*
50351502 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
50351567 TTGTGCTAGTGGCT
66 TTGTGCTAATGGCT
* * * * *
50351581 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
50351644 CATTTGTGC-ACATGGTT
63 CAATTGTGCTA-ATGGCT
50351661 ATATCCGG
1 ATATCCGG
50351669 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 18 0.24
80 56 0.76
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAATGGCT
Found at i:50358083 original size:40 final size:40
Alignment explanation
Indices: 50358045--50358253 Score: 275
Period size: 40 Copynumber: 5.2 Consensus size: 40
50358035 CTTTGGGACA
*
50358045 TAGCCCGG-TTATAGTAGCTCGCACAAATGCCTTCGGGA-CT
1 TAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCT
50358085 T-GTCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCT
1 TAG-CCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCT
* *
50358125 TAGTCCGGATTTAGTAACTCACACAAATGCCTTCGGATCT
1 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCT
*
50358165 TAGGCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCT
1 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCT
* * *
50358205 TAGTCTGGATTTAGTAACTTAGCACAAA-GCCTTCGGGA-CT
1 TAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTC-GGATCT
50358245 TAGCCCGGA
1 TAGCCCGGA
50358254 CATCATTCGA
Statistics
Matches: 153, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
39 4 0.03
40 135 0.88
41 14 0.09
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (40 bp):
TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCT
Found at i:50358140 original size:80 final size:80
Alignment explanation
Indices: 50358056--50358253 Score: 303
Period size: 80 Copynumber: 2.5 Consensus size: 80
50358046 AGCCCGGTTA
*
50358056 TAGTAGCTCGCACAAATGCCTTCGGGACTT-GTCCCGGATTTAGTAACTCGCACAAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAG-CCCGGATTTAGTAACTCGCACAAATGCCTTCG
50358120 GATCTTAGTCCGGATT
65 GATCTTAGTCCGGATT
* *
50358136 TAGTAACTCACACAAATGCCTTC-GGATCTTAGGCCGGATTTAGTAACTCGCACAAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCG
*
50358200 GATCTTAGTCTGGATT
65 GATCTTAGTCCGGATT
*
50358216 TAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
50358254 CATCATTCGA
Statistics
Matches: 107, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
79 3 0.03
80 93 0.87
81 11 0.10
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
ATCTTAGTCCGGATT
Found at i:50361040 original size:40 final size:40
Alignment explanation
Indices: 50360942--50361118 Score: 182
Period size: 40 Copynumber: 4.5 Consensus size: 40
50360932 CGGATGATAA
* * * * * * *
50360942 CCGGACTAAGATCCGAAGGCATTCGTGCAAGTTGCTGTAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
50360982 CCGGGCTATA-TCCTGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTA-AGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
50361022 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
50361062 CCGCGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
50361102 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
50361119 ATACTTGGGT
Statistics
Matches: 114, Mismatches: 18, Indels: 11
0.80 0.13 0.08
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 95 0.83
41 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:50370230 original size:27 final size:27
Alignment explanation
Indices: 50370154--50370243 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
50370144 TTTAGTTTAC
* *
50370154 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
50370181 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
50370208 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
50370235 TAAAATTAC
1 TAAAATTAC
50370244 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:50370253 original size:54 final size:54
Alignment explanation
Indices: 50370154--50370260 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
50370144 TTTAGTTTAC
* * *
50370154 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
50370208 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
50370261 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:50370268 original size:27 final size:27
Alignment explanation
Indices: 50370238--50370298 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
50370228 CGACTTGTAA
50370238 AATTACCAAAGTACCCCCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
* **** *
50370265 AATTATCGTTTTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
50370292 AATTACC
1 AATTACC
50370299 GTTTTACCCC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:50370301 original size:27 final size:27
Alignment explanation
Indices: 50370249--50370459 Score: 262
Period size: 27 Copynumber: 7.8 Consensus size: 27
50370239 ATTACCAAAG
* *
50370249 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
50370276 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
50370303 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
50370330 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
50370357 TACCCTCGATTTACAGAATTACAGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
50370384 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
50370411 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
50370438 TACCCTCGACTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
50370460 TAAAATACCC
Statistics
Matches: 165, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 163 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:50370468 original size:27 final size:27
Alignment explanation
Indices: 50370357--50370607 Score: 109
Period size: 27 Copynumber: 9.2 Consensus size: 27
50370347 ATTACCGTTT
* ***
50370357 TACCCTCGATTTACAGAATTAC-AGTTT
1 TACCCTCGATTTACAAAATTACTA-AAA
* * ***
50370384 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* ****
50370411 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
*
50370438 TACCCTCGACTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *** **
50370465 TACCCT-TAGTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *
50370492 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
50370519 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
50370546 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
50370575 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
50370602 TACCCT
1 TACCCT
50370608 TGGTTTGTAG
Statistics
Matches: 181, Mismatches: 31, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
26 3 0.02
27 150 0.83
28 9 0.05
29 19 0.10
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:50370469 original size:54 final size:54
Alignment explanation
Indices: 50370192--50370598 Score: 192
Period size: 54 Copynumber: 7.5 Consensus size: 54
50370182 AAAAATACTG
* ** *** * **
50370192 AAATACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCA
1 AAATACCCTTGATTTACAAAATTACTGTTTTACCCTCGACTTACAAAATTACCA
* ** * * * * *
50370246 AAGTACCCCCGATTTACAGAATTA-TCGTTTTACCCCCGATTTACATAATTACCG
1 AAATACCCTTGATTTACAAAATTACT-GTTTTACCCTCGACTTACAAAATTACCA
*** * * * *
50370300 TTTTACCCCTGATTTACATAATTA-TCGTTTTACCCTCGACTTACAGAATTACCG
1 AAATACCCTTGATTTACAAAATTACT-GTTTTACCCTCGACTTACAAAATTACCA
*** * * * * * * *
50370354 TTTTACCCTCGATTTACAGAATTACAGTTTTACCCTCGATTTATAGAATTACTA
1 AAATACCCTTGATTTACAAAATTACTGTTTTACCCTCGACTTACAAAATTACCA
*** *
50370408 TTTTACCCTTGATTTACAAAATTACTGTTTTACCCTCGACTTACAAAATTACTA
1 AAATACCCTTGATTTACAAAATTACTGTTTTACCCTCGACTTACAAAATTACCA
*** * *** * * **
50370462 AAATACCCTT-AGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTTGA-TTTACAAAATTACTGTTTTACCCTCGACTTACAAAATTACCA
* * * *** * * *
50370516 AAATACCCCTGATTTACAAAGTTACAGAAATACCCTTGACTTTCTAAAAATTA-TA
1 AAATACCCTTGATTTACAAAATTACTGTTTTACCCTCGACTTAC--AAAATTACCA
* *
50370571 GAAATACCATTGGTTTACAAAATTACTG
1 -AAATACCCTTGATTTACAAAATTACTG
50370599 AAATACCCTT
Statistics
Matches: 277, Mismatches: 69, Indels: 12
0.77 0.19 0.03
Matches are distributed among these distances:
53 2 0.01
54 244 0.88
55 2 0.01
56 29 0.10
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.35
Consensus pattern (54 bp):
AAATACCCTTGATTTACAAAATTACTGTTTTACCCTCGACTTACAAAATTACCA
Found at i:50370613 original size:27 final size:27
Alignment explanation
Indices: 50370411--50370609 Score: 143
Period size: 27 Copynumber: 7.3 Consensus size: 27
50370401 ATTACTATTT
***
50370411 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTGAAA
* * *
50370438 TACCCTCGACTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
*** *
50370465 TACCCTT-AGTTTGTGAAATTACCGAAA
1 TACCCTTGA-TTTACAAAATTACTGAAA
** ** **
50370492 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
* * *
50370519 TACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
50370546 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACT-GAAA
* *
50370575 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
50370602 TACCCTTG
1 TACCCTTG
50370610 GTTTGTAGAT
Statistics
Matches: 134, Mismatches: 30, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
26 1 0.01
27 107 0.80
28 8 0.06
29 18 0.13
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTGAAA
Found at i:50371988 original size:9 final size:9
Alignment explanation
Indices: 50371976--50372034 Score: 55
Period size: 9 Copynumber: 6.1 Consensus size: 9
50371966 TTTGATAAAC
50371976 ATGATATGT
1 ATGATATGT
*
50371985 ATGATATGCAC
1 ATGATATG--T
*
50371996 ATGACATGT
1 ATGATATGT
*
50372005 ATGATATGCAC
1 ATGATATG--T
50372016 ATGATATGT
1 ATGATATGT
50372025 ATGATATGT
1 ATGATATGT
50372034 A
1 A
50372035 CACGAGATGT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
9 25 0.62
11 15 0.38
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (9 bp):
ATGATATGT
Found at i:50371999 original size:20 final size:20
Alignment explanation
Indices: 50371974--50372032 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
50371964 ATTTTGATAA
50371974 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
50371994 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
50372014 ACATGATATGTATGATATG
1 ACATGATATGTATGATATG
50372033 TACACGAGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:50372122 original size:23 final size:24
Alignment explanation
Indices: 50372091--50372253 Score: 185
Period size: 24 Copynumber: 7.0 Consensus size: 24
50372081 GAGGAAGTGA
*
50372091 AAAAGGGCTTATGTCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
50372114 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50372138 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
50372162 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
50372185 TAAA-GGCTTATG-CCCAATTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
50372207 AAAAGGGCTT-TTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
50372230 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50372254 ATGATAAAGC
Statistics
Matches: 120, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
21 8 0.07
22 11 0.09
23 43 0.36
24 50 0.42
25 8 0.07
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:50372160 original size:47 final size:47
Alignment explanation
Indices: 50372091--50372254 Score: 185
Period size: 47 Copynumber: 3.5 Consensus size: 47
50372081 GAGGAAGTGA
* *
50372091 AAAAGGGCTTATGTCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
50372137 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * *
50372185 TAAA-GGCTTATG-CCCAATTATAAAAAGGGCTT-TTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
50372230 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
50372255 TGATAAAGCA
Statistics
Matches: 100, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
44 9 0.09
45 22 0.22
46 11 0.11
47 29 0.29
48 29 0.29
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:50372250 original size:69 final size:71
Alignment explanation
Indices: 50372091--50372253 Score: 217
Period size: 69 Copynumber: 2.3 Consensus size: 71
50372081 GAGGAAGTGA
* * * *
50372091 AAAAGGGCTTATGTCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATAAAAAGGGCTTATGCCCCA
50372156 GTTATC
66 GTTATC
*
50372162 AAAAGGGCTTACGCCCCAGTTATTAAA-GGCTTATG-CCCAATTATAAAAAGGGCTT-TTCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATAAAAAGGGCTTATGCCCCA
*
50372224 GTTATT
66 GTTATC
*
50372230 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
50372254 ATGATAAAGC
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
68 21 0.25
69 29 0.35
70 8 0.10
71 25 0.30
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:50372484 original size:31 final size:31
Alignment explanation
Indices: 50372446--50372509 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
50372436 CGTTTACAGT
50372446 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* ** *
50372477 AAAGGCTTCGGCCTAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50372508 AA
1 AA
50372510 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:50381940 original size:43 final size:43
Alignment explanation
Indices: 50381874--50381975 Score: 159
Period size: 43 Copynumber: 2.4 Consensus size: 43
50381864 CTATTCAGGC
* * *
50381874 CTTCGAGCCTAGCAGGCTATAATGCCGGTGATTTAATATCGGG
1 CTTCAAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCGGG
*
50381917 CTTTAAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCGGG
1 CTTCAAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCGGG
*
50381960 CTTCGAGCCTAGCAGG
1 CTTCAAGCCTAGCAGG
50381976 AGTAATGCTG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (43 bp):
CTTCAAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCGGG
Found at i:50389068 original size:40 final size:40
Alignment explanation
Indices: 50388902--50389086 Score: 164
Period size: 40 Copynumber: 4.6 Consensus size: 40
50388892 TTCGAATGAT
* * * *
50388902 ATCCGGGCTAAGTCCCGAAGG-GTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAA
** *
50388942 ATCCGGAATAAGAT-CCGACA-GCATACGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGA-AGGCATTCGTGCGAGTTACTAA
* * * *
50388982 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* *
50389022 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT-AA
*
50389063 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
50389087 TGAATGTGTA
Statistics
Matches: 119, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 2 0.02
40 108 0.91
41 9 0.08
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:50396731 original size:6 final size:6
Alignment explanation
Indices: 50396671--50396739 Score: 52
Period size: 6 Copynumber: 11.3 Consensus size: 6
50396661 AAGAAACATT
* * * *
50396671 ATCAGA A-CTAGA ATCAAA ATGAAA ATCAGA ATAAGA ATCA-A TATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA -ATCAGA
*
50396719 TAACAGA ATCAGA ATCAGA AT
1 -ATCAGA ATCAGA ATCAGA AT
50396740 GTGAATGCAT
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
5 2 0.04
6 41 0.80
7 8 0.16
ACGTcount: A:0.55, C:0.13, G:0.13, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:50396954 original size:28 final size:26
Alignment explanation
Indices: 50396859--50397000 Score: 160
Period size: 27 Copynumber: 5.3 Consensus size: 26
50396849 CATGGCTGCC
* * * * *
50396859 AGAATAGATATTGTGACAGAGTCACC
1 AGAACAGATATTGTGGCATAGCCACT
*
50396885 AGATACAGATATTGTGGCAGAGCCACT
1 AGA-ACAGATATTGTGGCATAGCCACT
50396912 AGAACAGATATTTGTGGCATAGCCACT
1 AGAACAGATA-TTGTGGCATAGCCACT
50396939 AGAAACAGATATTTGTGGCATAGCCACT
1 AG-AACAGATA-TTGTGGCATAGCCACT
* *
50396967 AGAAACAGATAATGTGGCAAAGCCACT
1 AG-AACAGATATTGTGGCATAGCCACT
50396994 -GAACAGA
1 AGAACAGA
50397001 ATACGTGGCA
Statistics
Matches: 106, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
25 6 0.06
26 11 0.10
27 53 0.50
28 36 0.34
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (26 bp):
AGAACAGATATTGTGGCATAGCCACT
Found at i:50396965 original size:55 final size:52
Alignment explanation
Indices: 50396889--50397000 Score: 154
Period size: 55 Copynumber: 2.1 Consensus size: 52
50396879 GTCACCAGAT
* *
50396889 ACAGATATTGTGGCAGAGCCACTAG-AACAGATATTTGTGGCATAGCCACTAGAA
1 ACAGATATTGTGGCAGAGCCACTAGAAACAGATA-ATGTGGCAAAGCCACT-G-A
*
50396943 ACAGATATTTGTGGCATAGCCACTAGAAACAGATAATGTGGCAAAGCCACTGA
1 ACAGATA-TTGTGGCAGAGCCACTAGAAACAGATAATGTGGCAAAGCCACTGA
50396996 ACAGA
1 ACAGA
50397001 ATACGTGGCA
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
53 6 0.11
54 8 0.15
55 31 0.58
56 8 0.15
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (52 bp):
ACAGATATTGTGGCAGAGCCACTAGAAACAGATAATGTGGCAAAGCCACTGA
Found at i:50397179 original size:22 final size:22
Alignment explanation
Indices: 50397151--50397212 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
50397141 GCAAATACGT
50397151 TTGGCACACAACCATAAT-TAGG
1 TTGGCACA-AACCATAATGTAGG
*
50397173 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAATGTAGG
*
50397195 TTGGCGCAAAGCCATAAT
1 TTGGCACAAA-CCATAAT
50397213 CAGAAGGCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
21 3 0.09
22 28 0.85
23 2 0.06
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (22 bp):
TTGGCACAAACCATAATGTAGG
Found at i:50397972 original size:27 final size:27
Alignment explanation
Indices: 50397642--50397964 Score: 414
Period size: 27 Copynumber: 12.0 Consensus size: 27
50397632 AGAGCAAAAT
* * * *
50397642 GGTAATTTTACCCCACAAGGGTATCAT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
*
50397669 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* **
50397696 GGTATTTCTACCCTACAATGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
50397723 GATAATTCTATCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50397750 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50397777 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
50397804 GTTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50397831 AGTAAATCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50397858 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
50397885 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50397912 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50397939 AGTAATTCTACCCTATAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
50397965 TAATAATTTT
Statistics
Matches: 259, Mismatches: 36, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 258 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:50397972 original size:81 final size:81
Alignment explanation
Indices: 50397670--50397964 Score: 473
Period size: 81 Copynumber: 3.6 Consensus size: 81
50397660 GGGTATCATG
* * *
50397670 GTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAATGGTATTTCGATAATTCTATC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACC
*
50397735 CTACAGGGGTATTTTA
66 CTACAGGGGTATTTCA
* *
50397751 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGTTATTTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACC
*
50397816 CTACAAGGGTATTTCA
66 CTACAGGGGTATTTCA
* *
50397832 GTAAATCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACC
50397897 CTACAGGGGTATTTCA
66 CTACAGGGGTATTTCA
* * * *
50397913 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTT
50397965 TAATAATTTT
Statistics
Matches: 198, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 198 1.00
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACC
CTACAGGGGTATTTCA
Found at i:50397987 original size:27 final size:27
Alignment explanation
Indices: 50397957--50398238 Score: 233
Period size: 27 Copynumber: 10.6 Consensus size: 27
50397947 TACCCTATAG
* *
50397957 GGGTATTTTAATAATTTT-CTAAATCGA
1 GGGTATTTCAGTAATTTTAC-AAATCGA
** * * * *
50397984 GGGTA-AACGGTAATTCTATAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
50398010 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
50398037 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
50398064 GGGTATTTTAGTAATTTTGCAAA-CTAA
1 GGGTATTTCAGTAATTTTACAAATC-GA
* *
50398091 GCGTA-TTC-GATAATTTTACAAATCAA
1 GGGTATTTCAG-TAATTTTACAAATCGA
50398117 GGGTATTTCAGTAATTTTAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * **
50398143 CGATATTTTGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
50398170 GGGTATTTCAATAATTTTATAAATCG-
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
50398196 GGGTACTTT-GGTAATTTTACAACT-GG
1 GGGTA-TTTCAGTAATTTTACAAATCGA
50398222 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
50398239 GGTAAACTAA
Statistics
Matches: 203, Mismatches: 39, Indels: 27
0.75 0.14 0.10
Matches are distributed among these distances:
25 5 0.02
26 89 0.44
27 108 0.53
28 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:50398206 original size:53 final size:53
Alignment explanation
Indices: 50397957--50398238 Score: 252
Period size: 53 Copynumber: 5.3 Consensus size: 53
50397947 TACCCTATAG
* * *** * * *
50397957 GGGTATTTTAATAATTTT-CTAAATCGAGGGTAAACGGTAATTCTATAAATCGG
1 GGGTATTTCAGTAATTTTAC-AAATCGAGGGTATTTGGTAATTTTACAAATCGA
* * *
50398010 GGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCGA
1 GGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTT-GGTAATTTTACAAATCGA
* * * * * * *
50398064 GGGTATTTTAGTAATTTTGCAAA-CTAAGCGTATTCGATAATTTTACAAATCAA
1 GGGTATTTCAGTAATTTTACAAATC-GAGGGTATTTGGTAATTTTACAAATCGA
* *
50398117 GGGTATTTCAGTAATTTTAC-AATCGACGATATTTTGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTA-TTTGGTAATTTTACAAATCGA
* * * *
50398170 GGGTATTTCAATAATTTTATAAATCG-GGGTACTTTGGTAATTTTACAACT-GG
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTA-TTTGGTAATTTTACAAATCGA
50398222 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
50398239 GGTAAACTAA
Statistics
Matches: 185, Mismatches: 36, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
52 22 0.12
53 117 0.63
54 46 0.25
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTGGTAATTTTACAAATCGA
Found at i:50400240 original size:6 final size:6
Alignment explanation
Indices: 50400210--50400297 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
50400200 AAGAAACATT
* * *
50400210 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA AGCAGA ATCAG- ATGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
50400259 ATCAGA ATCAGT ATCAGATA AT-AGA ATCAGA GTCAGA AT
1 ATCAGA ATCAGA ATCAG--A ATCAGA ATCAGA ATCAGA AT
50400298 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 6 0.09
6 48 0.75
7 6 0.09
8 4 0.06
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:50400264 original size:25 final size:25
Alignment explanation
Indices: 50400231--50400297 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
50400221 AATCAAAATG
*
50400231 AGAATCAGAAGCAGAATCAGATGAC
1 AGAATCAGAAGCAGAATCAGATAAC
* * *
50400256 AGAATCAGAATCAGTATCAGATAAT
1 AGAATCAGAAGCAGAATCAGATAAC
50400281 AGAATCAG-AGTCAGAAT
1 AGAATCAGAAG-CAGAAT
50400298 GTGAATGCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 1 0.03
25 34 0.97
ACGTcount: A:0.48, C:0.13, G:0.21, T:0.18
Consensus pattern (25 bp):
AGAATCAGAAGCAGAATCAGATAAC
Found at i:50400455 original size:27 final size:26
Alignment explanation
Indices: 50400415--50400522 Score: 144
Period size: 27 Copynumber: 4.0 Consensus size: 26
50400405 AGCATGGCTG
* *
50400415 CCAGAACAGATATTGTGACAAAGTCA
1 CCAGAACAGATATTGTGGCAAAGCCA
*
50400441 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAAAGCCA
*
50400468 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAAAGCCA
*
50400495 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGGCAAAGCCA
50400522 C
1 C
50400523 TTAACAGAAT
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 12 0.16
27 53 0.73
28 8 0.11
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAAAGCCA
Found at i:50400548 original size:54 final size:55
Alignment explanation
Indices: 50400415--50400548 Score: 134
Period size: 54 Copynumber: 2.5 Consensus size: 55
50400405 AGCATGGCTG
* * * * *
50400415 CCAGAACAGATAT-TGT-GACAAAGTCACCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATACGTGGACAAAGCCACCAGAAACAGATAATGTGGCAAAGCCA
** *
50400468 CCAGAACAGATATTTGTGG-CATAGCCACCAGAAACAGATAATGTGGCAAAGCCA
1 CCAGAACAGATATACGTGGACAAAGCCACCAGAAACAGATAATGTGGCAAAGCCA
**
50400522 -CTTAACAGA-ATACGTGGCACAAAGCCA
1 CCAGAACAGATATACGTGG-ACAAAGCCA
50400549 TTGATAACTG
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
52 6 0.09
53 20 0.30
54 40 0.60
55 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (55 bp):
CCAGAACAGATATACGTGGACAAAGCCACCAGAAACAGATAATGTGGCAAAGCCA
Found at i:50400709 original size:22 final size:23
Alignment explanation
Indices: 50400681--50400742 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
50400671 GCAAATACGT
*
50400681 TTGGCACACAGCCATAAT-CAGG
1 TTGGCACAAAGCCATAATGCAGG
*
50400703 TTGGCACAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGCAGG
*
50400725 TTGGCGCAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
50400743 TAGAAGGCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGCAGG
Found at i:50401591 original size:27 final size:27
Alignment explanation
Indices: 50401155--50401583 Score: 429
Period size: 27 Copynumber: 16.0 Consensus size: 27
50401145 AGGGCAAAAT
* * *
50401155 GGTAATTTTACCCCACAAGGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
* * *
50401182 GGTAATCCTACCCTCCAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50401209 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
50401236 GATAACTCTATCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50401263 AGTAATTCTACCCTATAGGGGTATTTTC
1 GGTAATTCTACCCTACAGGGGTA-TTTC
* * *
50401291 -ATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* ** *
50401317 GGTATTTCTACCCTACAATGGTTTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
50401344 GGTAATTCTACCCTACAGGGGTATTTTC
1 GGTAATTCTACCCTACAGGGGTA-TTTC
50401372 -GTAATTCTA-CCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
50401396 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
50401423 AGTATTTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50401450 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50401477 AGTAAATT-TACCATACAGGGGTATTTC
1 GGT-AATTCTACCCTACAGGGGTATTTC
* *
50401504 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
50401531 AATAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50401558 GATAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
50401584 AAAAAATTTT
Statistics
Matches: 341, Mismatches: 52, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
24 3 0.01
25 8 0.02
26 32 0.09
27 287 0.84
28 11 0.03
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:50401646 original size:54 final size:54
Alignment explanation
Indices: 50401588--50401807 Score: 160
Period size: 53 Copynumber: 4.1 Consensus size: 54
50401578 GTATTTAAAA
* * * * *
50401588 AATTTTGTAAATCGAGGGTAAAACAGTAGTTTTATAAATCGGGGGTACTTTGGT
1 AATTTTGCAAATCGAGGGTAAAACAGTAATTTTACAAATCGAGGGTACTTTAGT
* * **** *
50401642 AATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTAGT
1 AATTTTGCAAATCGAGGGTAAAACAGTAATTTTACAAATCGAGGGTACTTTAGT
* ** * * *
50401696 AATTTTGCAAA-CTGAGCGT-ATTCGGTAATTTTACAAATCGAGGGTATTTTAAT
1 AATTTTGCAAATC-GAGGGTAAAACAGTAATTTTACAAATCGAGGGTACTTTAGT
* ** *** * *
50401749 AATTTTAC-AATCGACAGTATTTCGGTAATTTTACAAATCGAAGGTA-TTTCAGT
1 AATTTTGCAAATCGAGGGTAAAACAGTAATTTTACAAATCGAGGGTACTTT-AGT
50401802 AATTTT
1 AATTTT
50401808 ATAAACCGGG
Statistics
Matches: 137, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
52 9 0.07
53 72 0.53
54 56 0.41
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
AATTTTGCAAATCGAGGGTAAAACAGTAATTTTACAAATCGAGGGTACTTTAGT
Found at i:50401732 original size:26 final size:27
Alignment explanation
Indices: 50401596--50401858 Score: 225
Period size: 27 Copynumber: 9.9 Consensus size: 27
50401586 AAAATTTTGT
*** * *
50401596 AAATCGAGGGTAAAACAGTAGTTTTAT
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
50401623 AAATCGGGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
* *
50401650 AAGTCGAGGGTATTTTAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
50401677 AAATCGAGGGTATTTTAGTAATTTTGC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
50401704 AAA-CTGAGCGTA-TTCGGTAATTTTAC
1 AAATC-GAGGGTATTTCAGTAATTTTAC
* *
50401730 AAATCGAGGGTATTTTAATAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
** *
50401757 -AATCGACAGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
50401783 AAATCGAAGGTATTTCAGTAATTTTAT
1 AAATCGAGGGTATTTCAGTAATTTTAC
* * *
50401810 AAACCGGGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
* *
50401837 -AACCG-GGGTATTTCAATAATTT
1 AAATCGAGGGTATTTCAGTAATTT
50401859 GGTAAACTAA
Statistics
Matches: 192, Mismatches: 36, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
24 3 0.02
25 11 0.06
26 50 0.26
27 125 0.65
28 3 0.02
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:50401737 original size:53 final size:53
Alignment explanation
Indices: 50401617--50401813 Score: 218
Period size: 53 Copynumber: 3.7 Consensus size: 53
50401607 AAAACAGTAG
* * * * * ** **
50401617 TTTTATAAATCGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAGTAA
1 TTTTACAAATCGAGGGTATTTTAGTAATTTTACAA-ACGACAGTATTTCGGTAA
*
50401671 TTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAACTGAGC-GTA-TTCGGTAA
1 TTTTACAAATCGAGGGTATTTTAGTAATTTTACAAAC-GA-CAGTATTTCGGTAA
* *
50401724 TTTTACAAATCGAGGGTATTTTAATAATTTTACAATCGACAGTATTTCGGTAA
1 TTTTACAAATCGAGGGTATTTTAGTAATTTTACAAACGACAGTATTTCGGTAA
* * *
50401777 TTTTACAAATCGAAGGTATTTCAGTAATTTTATAAAC
1 TTTTACAAATCGAGGGTATTTTAGTAATTTTACAAAC
50401814 CGGGGGTACT
Statistics
Matches: 122, Mismatches: 17, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
51 1 0.01
52 5 0.04
53 81 0.66
54 35 0.29
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (53 bp):
TTTTACAAATCGAGGGTATTTTAGTAATTTTACAAACGACAGTATTTCGGTAA
Found at i:50401745 original size:80 final size:81
Alignment explanation
Indices: 50401611--50401838 Score: 241
Period size: 80 Copynumber: 2.8 Consensus size: 81
50401601 GAGGGTAAAA
* * ** *
50401611 CAGTAGTTTTATAAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTT
1 CAGTAATTTTACAAATCGAAGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTT
**
50401675 ACAAATCGAGGGTATTT
65 ACAAATCGACAGTATTT
* * *
50401692 TAGTAATTTTGCAAA-CTG-AGCGTA-TTCGGTAATTTTACAAATCGAGGGTATTTTAATAATTT
1 CAGTAATTTTACAAATC-GAAG-GTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTT
50401754 TAC-AATCGACAGTATTT
64 TACAAATCGACAGTATTT
* * * * * * *
50401771 CGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTA
1 CAGTAATTTTACAAATCGAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTA
50401836 CAA
66 CAA
50401839 CCGGGGTATT
Statistics
Matches: 121, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
79 30 0.25
80 75 0.62
81 16 0.13
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.39
Consensus pattern (81 bp):
CAGTAATTTTACAAATCGAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTA
CAAATCGACAGTATTT
Found at i:50403726 original size:45 final size:45
Alignment explanation
Indices: 50403668--50403818 Score: 239
Period size: 45 Copynumber: 3.4 Consensus size: 45
50403658 CATTTCACTG
* *
50403668 TATAGCCTACTAGGCTCGAAGGCCTGAATAGTATATCACTGGCAT
1 TATAGCCTGCTAGGCTCGAAGGCCTGAATAGTATATCACCGGCAT
* *
50403713 TATAGCTTGCTAGGCTCGAAGGCCCGAATAGTATATCACCGGCAT
1 TATAGCCTGCTAGGCTCGAAGGCCTGAATAGTATATCACCGGCAT
* * *
50403758 TATAGCCTGCTAAGCTCAAAGGCCTAAATAGTATATCACCGGCAT
1 TATAGCCTGCTAGGCTCGAAGGCCTGAATAGTATATCACCGGCAT
50403803 TATAGCCTGCTAGGCT
1 TATAGCCTGCTAGGCT
50403819 TAAAGGCCCA
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 96 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (45 bp):
TATAGCCTGCTAGGCTCGAAGGCCTGAATAGTATATCACCGGCAT
Found at i:50403824 original size:45 final size:45
Alignment explanation
Indices: 50403668--50403835 Score: 237
Period size: 45 Copynumber: 3.7 Consensus size: 45
50403658 CATTTCACTG
* * ** *
50403668 TATAGCCTACTAGGCTCGAAGGCCTGAATAGTATATCACTGGCAT
1 TATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATATCACCGGCAT
* * *
50403713 TATAGCTTGCTAGGCTCGAAGGCCCGAATAGTATATCACCGGCAT
1 TATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATATCACCGGCAT
* *
50403758 TATAGCCTGCTAAGCTCAAAGGCCTAAATAGTATATCACCGGCAT
1 TATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATATCACCGGCAT
*
50403803 TATAGCCTGCTAGGCTTAAAGGCCCAAATAGTA
1 TATAGCCTGCTAGGCTCAAAGGCCCAAATAGTA
50403836 CTGTACGATA
Statistics
Matches: 111, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 111 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.25
Consensus pattern (45 bp):
TATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATATCACCGGCAT
Found at i:50404665 original size:47 final size:47
Alignment explanation
Indices: 50404613--50404757 Score: 220
Period size: 47 Copynumber: 3.1 Consensus size: 47
50404603 AAAATTTTCT
* **
50404613 TTAACTAAGTAACTTATCCGAAAATATTAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGAAATTATTAAGAACAAATTTAACAAGC
*
50404660 TTAACTAAGTAACTTATCCGGAATTATTAAGAACAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGAAATTATTAAGAACAAATTTAACAAGC
* *
50404707 TTAACTAAGTAACTTATAC-AGAATTATTAAGAAAAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGA-AATTATTAAGAACAAATTTAACAAGC
50404754 TTAA
1 TTAA
50404758 ATTCAACTTA
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 90 1.00
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGAAATTATTAAGAACAAATTTAACAAGC
Found at i:50412108 original size:16 final size:16
Alignment explanation
Indices: 50412089--50412119 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50412079 CTTCTTCACT
50412089 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
50412105 TACTTACTTACTTAA
1 TACTCACTTACTTAA
50412120 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:50412125 original size:20 final size:20
Alignment explanation
Indices: 50412086--50412125 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
50412076 AAACTTCTTC
* *
50412086 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
50412106 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
50412126 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:50412501 original size:55 final size:53
Alignment explanation
Indices: 50412311--50412559 Score: 244
Period size: 55 Copynumber: 4.7 Consensus size: 53
50412301 ACGCGGGTAC
* * * * *
50412311 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
*
50412360 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* *
50412413 CTCACCAATGCCATG-CTTGGCATGGTCTTACATGGTACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * *
50412467 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA
* * *
50412520 CCTTACCAATTCCCATGCCTTGGCATGGTCTTACATGGTA
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTA
50412560 TCGTTAGACC
Statistics
Matches: 169, Mismatches: 18, Indels: 21
0.81 0.09 0.10
Matches are distributed among these distances:
49 35 0.21
51 2 0.01
52 30 0.18
53 19 0.11
54 28 0.17
55 52 0.31
56 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:50412512 original size:107 final size:110
Alignment explanation
Indices: 50412358--50412559 Score: 313
Period size: 107 Copynumber: 1.9 Consensus size: 110
50412348 ATCCTTTTGA
* *
50412358 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
50412421 -TGCCATG-CTTGGCATGGTCTTACATGGTACCTTTGCCTTATAGT
65 TTCCCATGCCTTGGCATGGTCTTACATGGTACCTTTGCCTTATAGT
* * *
50412465 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
50412530 TCCCATGCCTTGGCATGGTCTTACATGGTA
66 TCCCATGCCTTGGCATGGTCTTACATGGTA
50412560 TCGTTAGACC
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
106 1 0.01
107 49 0.58
108 7 0.08
109 6 0.07
110 22 0.26
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TCCCATGCCTTGGCATGGTCTTACATGGTACCTTTGCCTTATAGT
Found at i:50420005 original size:53 final size:54
Alignment explanation
Indices: 50419922--50420132 Score: 241
Period size: 55 Copynumber: 3.9 Consensus size: 54
50419912 GGTATCGTTT
* *
50419922 TGAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTGGCCTTA
1 TGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* * *
50419976 TG-AACTCACCAATGCCATGTCTTGGCATGGTCTCACATAGG-A-CCTTTGCCTTA
1 TGAAACTTACCAATGCCATGTCTTGACATGGTCTTACAT-GGTATCC-TTGCCTTA
* * * * *
50420029 TAGCAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTA
1 T-GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* *
50420084 -GAAACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 TGAAA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
50420133 AAACCCTAAT
Statistics
Matches: 130, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
52 2 0.02
53 44 0.34
54 13 0.10
55 70 0.54
56 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
TGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA
Found at i:50420069 original size:108 final size:110
Alignment explanation
Indices: 50419925--50420123 Score: 287
Period size: 108 Copynumber: 1.8 Consensus size: 110
50419915 ATCGTTTTGA
* *
50419925 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTGGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTGGCCTTA-GAAACCTCACCAA
*
50419988 -TGCCATGTCTTGGCATGGTCTCACATAGGACCTTTGCCTTATAGC
65 TTGCCATGCCTTGGCATGGTCTCACATAGGACCTTTGCCTTATAGC
* * * * *
50420033 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTGGCCTTAGAAACCTCACCAAT
*
50420098 TGCCATGCCTTGGCATGGTCTTACAT
66 TGCCATGCCTTGGCATGGTCTCACAT
50420124 GGTATCCTTA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.59
109 7 0.09
110 24 0.30
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTGGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTCACATAGGACCTTTGCCTTATAGC
Found at i:50421967 original size:40 final size:40
Alignment explanation
Indices: 50421912--50422129 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
50421902 CGGATGATAA
* *
50421912 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
50421952 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
50421992 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50422032 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50422072 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
50422112 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50422130 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 17 0.10
40 150 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:50430136 original size:40 final size:40
Alignment explanation
Indices: 50429948--50430161 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
50429938 CGGATGATAA
* *
50429948 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
50429988 CCGGGCTAAG-CCCGAAGGCATTTGTGC-AGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50430026 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50430066 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
50430106 CCGGGCTAAGTCTCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
50430146 -C-GGCTAAATCCC-AAGG
1 CCGGGCTAAGTCCCGAAGG
50430162 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 9, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
37 4 0.02
38 27 0.17
39 37 0.23
40 93 0.58
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:50433877 original size:40 final size:40
Alignment explanation
Indices: 50433828--50433992 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 40
50433818 TCGAATTTAA
* * * *
50433828 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACATAGC
1 CCGGTTATAGTGACTCGCACGATTGCCTTCGGGACATAGC
* *
50433868 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGA-ATTAGC
1 CCGGTTATAGTGACTCGCACGATTGCCTTCGGGACA-TAGC
* * * *
50433908 CCGGATT-TAGTAACTCGCACGAATGCCTTCGGGACTTAAC
1 CCGG-TTATAGTGACTCGCACGATTGCCTTCGGGACATAGC
* * * * * *
50433948 CCGGTTTTGGT-ACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGTTATAGTGACTCGCACGATTGCCTTCGGGACATAGC
50433987 CCGGTT
1 CCGGTT
50433993 TTGTCACTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
39 36 0.34
40 69 0.64
41 2 0.02
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (40 bp):
CCGGTTATAGTGACTCGCACGATTGCCTTCGGGACATAGC
Found at i:50433974 original size:39 final size:40
Alignment explanation
Indices: 50433854--50434024 Score: 193
Period size: 40 Copynumber: 4.3 Consensus size: 40
50433844 GCTCGATTGT
* * * * * *
50433854 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
* * * *
50433894 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
*
50433934 CTTCGGGACTTAACCCGGTTTTGGT-ACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
* * *
50433973 CTTCGGGACTTAACCCGGTTTT-GTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGTTTTAGTAAC-TCGCACAAATGC
50434013 CTTCGGGACTTA
1 CTTCGGGACTTA
50434025 GCCCCGACAC
Statistics
Matches: 114, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
38 2 0.02
39 37 0.32
40 75 0.66
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
Found at i:50434015 original size:79 final size:80
Alignment explanation
Indices: 50433854--50434024 Score: 202
Period size: 79 Copynumber: 2.1 Consensus size: 80
50433844 GCTCGATTGT
* * * * *
50433854 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGT
1 CTTCGGGACTTAACCCGGTTATAGTGACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
* * *
50433919 AACTCGCACGAATGC
66 AACTAGCACAAAAGC
* * * *
50433934 CTTCGGGACTTAACCCGGTTTTGGT-ACTCGCACAAATGCCTTCGGGACTTAACCCGG-TTTTGT
1 CTTCGGGACTTAACCCGGTTATAGTGACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
*
50433997 CACTTAGCACAAAAGC
66 AAC-TAGCACAAAAGC
50434013 CTTCGGGACTTA
1 CTTCGGGACTTA
50434025 GCCCCGACAC
Statistics
Matches: 77, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
78 7 0.09
79 49 0.64
80 21 0.27
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (80 bp):
CTTCGGGACTTAACCCGGTTATAGTGACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
AACTAGCACAAAAGC
Found at i:50442004 original size:78 final size:80
Alignment explanation
Indices: 50441909--50442084 Score: 214
Period size: 78 Copynumber: 2.2 Consensus size: 80
50441899 GCTCGATTGT
* * * *
50441909 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCC-GATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAGT
* *
50441973 AAC-TCGCAC-AATGC
65 AACTTAGCACAAAAGC
* * * * * *
50441987 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTACCCGGATTTGGTC
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTA
50442052 ACTTAGCACAAAAGC
66 ACTTAGCACAAAAGC
50442067 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
50442085 ACATTCGAAT
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
77 3 0.04
78 53 0.65
79 5 0.06
80 21 0.26
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTA
ACTTAGCACAAAAGC
Found at i:50442014 original size:39 final size:40
Alignment explanation
Indices: 50441909--50442085 Score: 200
Period size: 40 Copynumber: 4.5 Consensus size: 40
50441899 GCTCGATTGT
* * * *
50441909 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
*
50441949 CTTCGGGAATTAGCCC-GATTTAGTAACTCGCAC-AATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
50441987 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
50442027 CTTCGGGACTTA-CCCGGATTTGGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCACAAATGC
50442067 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
50442086 CATTCGAATA
Statistics
Matches: 119, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
38 18 0.15
39 40 0.34
40 55 0.46
41 6 0.05
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:50442663 original size:22 final size:25
Alignment explanation
Indices: 50442612--50442664 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 25
50442602 GTTGAGGCCA
50442612 ATTACATTTTAATACACATAATGGC
1 ATTACATTTTAATACACATAATGGC
*
50442637 A-TACATTTTACTA-AC-TAAT-GC
1 ATTACATTTTAATACACATAATGGC
50442658 ATTACAT
1 ATTACAT
50442665 ATTGTACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 3 0.12
22 9 0.35
23 2 0.08
24 11 0.42
25 1 0.04
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.38
Consensus pattern (25 bp):
ATTACATTTTAATACACATAATGGC
Found at i:50450312 original size:40 final size:40
Alignment explanation
Indices: 50450257--50450466 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
50450247 AACATTGGAA
50450257 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
50450297 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
50450337 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
50450377 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
50450416 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
50450457 CTATATCCGG
1 ATATATCCGG
50450467 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:50456623 original size:27 final size:27
Alignment explanation
Indices: 50456584--50456744 Score: 189
Period size: 27 Copynumber: 6.0 Consensus size: 27
50456574 CAAATTAATT
*
50456584 AAATGACTATTTTGCCTTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* *
50456611 AAATGACTGTTTTGCCATTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* * *
50456638 AAATAACTGTTTTGCCCTAATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* * *
50456665 AAATGATTTTTTTGCCTTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* *
50456692 AAATAACTATTTTGCCCTTATAG-AGTA
1 AAATGACTATTTTGCCCTTAT-GTGGTA
* *
50456719 AGATGACTATTTTGTCCTTATGTGGT
1 AAATGACTATTTTGCCCTTATGTGGT
50456745 GTATGCATAT
Statistics
Matches: 113, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 111 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.43
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATGTGGTA
Done.