Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 183 of 427
Found at i:50457080 original size:18 final size:18
Alignment explanation
Indices: 50457057--50457102 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
50457047 AAGACGTGTA
50457057 TACTGTTACTGCACTGAT
1 TACTGTTACTGCACTGAT
*
50457075 TACTGTTTCTGCACTGAT
1 TACTGTTACTGCACTGAT
*
50457093 TATTGTTACT
1 TACTGTTACT
50457103 ATAATGGGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46
Consensus pattern (18 bp):
TACTGTTACTGCACTGAT
Found at i:50459307 original size:27 final size:26
Alignment explanation
Indices: 50459259--50459310 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
50459249 GCGAGGCTGC
*
50459259 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
50459285 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
50459311 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:50459964 original size:27 final size:27
Alignment explanation
Indices: 50459934--50460164 Score: 293
Period size: 27 Copynumber: 8.6 Consensus size: 27
50459924 GGGGCAAAAT
* * *
50459934 GGTAATTTTACCCCAC-GAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
50459961 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
50459988 AGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50460015 GATAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50460042 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50460069 GGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50460096 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50460123 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
50460150 AGTAATGCTAGCCTA
1 GGTAATTCTACCCTA
50460165 TAGATATGAG
Statistics
Matches: 177, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
27 176 0.99
28 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:50461181 original size:55 final size:56
Alignment explanation
Indices: 50461116--50461220 Score: 133
Period size: 56 Copynumber: 1.9 Consensus size: 56
50461106 AGCATGGCTG
* **
50461116 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATCTTTTGTGGCAGTGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCAGTGCCA
* * *
50461172 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCA
50461221 TAGCCACTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
55 20 0.48
56 22 0.52
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCAGTGCCA
Found at i:50461192 original size:27 final size:28
Alignment explanation
Indices: 50461141--50461220 Score: 108
Period size: 27 Copynumber: 2.9 Consensus size: 28
50461131 GTGACAGAGT
** *
50461141 CACCAGATACAGATCTTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGGGC
*
50461170 CACCAGAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGGGC
50461197 CACCAGAACAGATAATTTGTGGCA
1 CACCAGAACAGATAATTTGTGGCA
50461221 TAGCCACTAG
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 24 0.52
28 15 0.33
29 7 0.15
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGGGC
Found at i:50461383 original size:28 final size:28
Alignment explanation
Indices: 50461336--50461428 Score: 143
Period size: 28 Copynumber: 3.3 Consensus size: 28
50461326 AAATTAAGCC
*
50461336 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
50461364 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
50461392 TACGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
50461420 TAAGGGTAT
1 TAGGGGTAT
50461429 TCTAGTACAT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 1 0.02
28 60 0.98
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:50468359 original size:27 final size:27
Alignment explanation
Indices: 50468324--50468559 Score: 197
Period size: 27 Copynumber: 8.7 Consensus size: 27
50468314 TTAGTTTACG
* *
50468324 AAATCACCAAAAAACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
50468351 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
50468378 AAATTACCAAAATACCCCTAGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
50468405 AAATTACCATAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
50468432 AAATTACGAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
50468459 AAATTA-CAGAAATACCCATAGTTTGAA
1 AAATTACCA-AAATACCCCTGGTTTGTA
* ***
50468486 AAATTACTAAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
** * *
50468513 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
50468540 AAATTACTAAAATACTCCTG
1 AAATTACCAAAATACCCCTG
50468560 TAAGATAGAA
Statistics
Matches: 168, Mismatches: 37, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
26 4 0.02
27 160 0.95
28 4 0.02
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:50468463 original size:81 final size:81
Alignment explanation
Indices: 50468324--50468554 Score: 236
Period size: 81 Copynumber: 2.9 Consensus size: 81
50468314 TTAGTTTACG
* * * * * **
50468324 AAATCACCAAAAAACCCCTGGTTTGTAAAATTACCAAAATA-CCCTTAGTTTACAAAATTACCAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACGAAAATACCCCTGA-TTTGTAAAATTACCAA
*
50468388 AATACCCCTAGTTT-ATA
65 AATACCCATAGTTTGA-A
* * *
50468405 AAATTACCATAATACCCTTGGTTTATAAAATTACGAAAATACCCCTGATTTGTGAAATTA-CAGA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACGAAAATACCCCTGATTTGTAAAATTACCA-A
50468469 AATACCCATAGTTTGAA
65 AATACCCATAGTTTGAA
* * *** * *
50468486 AAATTACTAAAATACCCTCGACCTGTAAAATTACTG-AAATACCCTTGATTTGTAAAATTACTAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTAC-GAAAATACCCCTGATTTGTAAAATTACCAA
50468550 AATAC
65 AATAC
50468555 TCCTGTAAGA
Statistics
Matches: 124, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
80 2 0.02
81 114 0.92
82 8 0.06
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.29
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTGGTTTGTAAAATTACGAAAATACCCCTGATTTGTAAAATTACCAAA
ATACCCATAGTTTGAA
Found at i:50468596 original size:27 final size:27
Alignment explanation
Indices: 50468566--50468735 Score: 259
Period size: 27 Copynumber: 6.3 Consensus size: 27
50468556 CCTGTAAGAT
50468566 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
50468593 AGAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
** *
50468620 AGAATTACCATTTTACCCTTAATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* *
50468647 AGAATTACCGTCTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
50468674 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
50468701 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
50468728 AAAATTAC
1 AGAATTAC
50468736 TGAAATACCT
Statistics
Matches: 128, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.38
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:50468744 original size:27 final size:26
Alignment explanation
Indices: 50468660--50468799 Score: 109
Period size: 27 Copynumber: 5.2 Consensus size: 26
50468650 ATTACCGTCT
* ***
50468660 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTA-CAAAA
* ***
50468687 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTA-CAAAA
*
50468714 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTAC-AAAA
* * *
50468741 TACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTA-CAAAA
* *
50468768 TACCCTCGATTAATAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTA-CAAAA
50468795 TACCC
1 TACCC
50468800 CTGGTTTGTA
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 95 0.98
28 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
TACCCTCGATTTACAAAATTACAAAA
Found at i:50468805 original size:54 final size:54
Alignment explanation
Indices: 50468317--50468824 Score: 283
Period size: 54 Copynumber: 9.4 Consensus size: 54
50468307 GAATACTTTA
* * * * * *
50468317 GTTTACGAAATCACCAAAAAACCC-CTGGTTTGTAAAATTACCAAAATACCCTTA
1 GTTTACAAAATTACCAAAATACCCTC-GATTTATAAAATTACCAAAATACCCTTG
* *
50468371 GTTTACAAAATTACCAAAATACCC-CTAGTTTATAAAATTACCATAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCTCGA-TTTATAAAATTACCAAAATACCCTTG
* * * * * *
50468425 GTTTATAAAATTACGAAAATACCC-CTGATTTGTGAAATTA-CAGAAATACCCATA
1 GTTTACAAAATTACCAAAATACCCTC-GATTTATAAAATTACCA-AAATACCCTTG
* ** * **
50468479 GTTTGA-AAAATTACTAAAATACCCTCGACCTGTAAAATTACTGAAATACCCTTG
1 GTTT-ACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTG
* ** * ** * *** *
50468533 ATTTGTAAAATTACTAAAATACTCCT-G-TAAGATAGAATTACCATTTTACCCTCG
1 GTTTACAAAATTACCAAAATAC-CCTCGAT-TTATAAAATTACCAAAATACCCTTG
* * * **** * *** *
50468587 ATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTTA
1 GTTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTG
* * * **** * * *** *
50468641 ATTTATAGAATTACCGTCTTACCCTCGATTTACAGAATTACCATTTTACCCTCG
1 GTTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTG
* * *** * ** *
50468695 ATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCTTTG
1 GTTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTG
* *
50468749 GTTTACAAAATTACCAAAATACCCTCGATTAATAAAATTACCAAAATACCCCTG
1 GTTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTG
**
50468803 GTTTGTAAAATTACCAAAATAC
1 GTTTACAAAATTACCAAAATAC
50468825 AAATTACCAA
Statistics
Matches: 363, Mismatches: 80, Indels: 22
0.78 0.17 0.05
Matches are distributed among these distances:
53 5 0.01
54 351 0.97
55 7 0.02
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (54 bp):
GTTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTG
Found at i:50468811 original size:27 final size:27
Alignment explanation
Indices: 50468723--50468824 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
50468713 TTACCCTCGA
* ** **
50468723 TTTACAAAATTACTGAAATACCTTTGG
1 TTTATAAAATTACCAAAATACCCCTGG
* *
50468750 TTTACAAAATTACCAAAATA-CCCTCGA
1 TTTATAAAATTACCAAAATACCCCT-GG
*
50468777 TTAATAAAATTACCAAAATACCCCTGG
1 TTTATAAAATTACCAAAATACCCCTGG
*
50468804 TTTGTAAAATTACCAAAATAC
1 TTTATAAAATTACCAAAATAC
50468825 AAATTACCAA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.03
27 57 0.90
28 4 0.06
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCCTGG
Found at i:50468823 original size:81 final size:81
Alignment explanation
Indices: 50468350--50468824 Score: 287
Period size: 81 Copynumber: 5.9 Consensus size: 81
50468340 CCTGGTTTGT
* *
50468350 AAAATTACCAAAATACCCT-TAGTTTACAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
1 AAAATTACCAAAATACCCTCGA-TTTATAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
* * * *
50468414 TAATACCCTTGGTTTAT
65 AAATACCCTCGATTTAC
* * * *
50468431 AAAATTACGAAAATACCC-CTGATTTGTGAAATTA-CAGAAATACCCATAGTTTGA-AAAATTAC
1 AAAATTACCAAAATACCCTC-GATTTATAAAATTACCA-AAATACCCCTAGTTT-ATAAAATTAC
* ** **
50468493 TAAAATACCCTCGACCTGT
63 CAAAATACCCTCGATTTAC
** * * * * ** *
50468512 AAAATTACTGAAATACCCTTGATTTGTAAAATTACTAAAATACTCCT-GTAAGATAGAATTACCA
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCCTAGT-TTATAAAATTACCA
***
50468576 TTTTACCCTCGATTTAC
65 AAATACCCTCGATTTAC
* * **** * *** * * * **
50468593 AGAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTTAATTTATAGAATTACCGT
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAA
**
50468658 CTTACCCTCGATTTAC
66 AATACCCTCGATTTAC
* *** * * *** * * **
50468674 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA-CCCTCGATTTACAAAATTACTG
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCCTAG-TTTATAAAATTACCA
* * *
50468738 AAATACCTTTGGTTTAC
65 AAATACCCTCGATTTAC
* * *
50468755 AAAATTACCAAAATACCCTCGATTAATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAA
50468820 AATAC
66 AATAC
50468825 AAATTACCAA
Statistics
Matches: 302, Mismatches: 81, Indels: 22
0.75 0.20 0.05
Matches are distributed among these distances:
80 8 0.03
81 285 0.94
82 9 0.03
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAA
AATACCCTCGATTTAC
Found at i:50468830 original size:15 final size:15
Alignment explanation
Indices: 50468810--50468839 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
50468800 CTGGTTTGTA
50468810 AAATTACCAAAATAC
1 AAATTACCAAAATAC
50468825 AAATTACCAAAATAC
1 AAATTACCAAAATAC
50468840 CCTTGTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (15 bp):
AAATTACCAAAATAC
Found at i:50468857 original size:27 final size:27
Alignment explanation
Indices: 50468826--50469101 Score: 342
Period size: 27 Copynumber: 10.3 Consensus size: 27
50468816 CCAAAATACA
* *
50468826 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50468853 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50468880 AATTACCGGAATA-CCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
50468906 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50468933 AATTATCGAAATACACCCCTGTAGGGTAG
1 AATTACCGAAAT--ACCCCTGTAGGGTAG
*
50468962 AATTACCGAAAT-CCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50468988 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
50469015 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * * * *
50469042 AATTACTAAAATAACCCTATAGGATGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
50469069 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
50469095 AATTACC
1 AATTACC
50469102 ATTTTGCCCC
Statistics
Matches: 214, Mismatches: 31, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
26 60 0.28
27 128 0.60
29 26 0.12
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:50468857 original size:42 final size:42
Alignment explanation
Indices: 50468779--50468866 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
50468769 ACCCTCGATT
**
50468779 AATA-AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA
1 AATACAAATTACCAAAATACCCCTGGTGGGTAAAATTACCAA
* * *
50468820 AATACAAATTACCAAAATA-CCCTTGTAGGGTAGAATTACCGA
1 AATACAAATTACCAAAATACCCCTGGT-GGGTAAAATTACCAA
50468862 AATAC
1 AATAC
50468867 CCCTATAGGG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
41 10 0.25
42 30 0.75
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.25
Consensus pattern (42 bp):
AATACAAATTACCAAAATACCCCTGGTGGGTAAAATTACCAA
Found at i:50468915 original size:53 final size:54
Alignment explanation
Indices: 50468826--50469083 Score: 340
Period size: 53 Copynumber: 4.8 Consensus size: 54
50468816 CCAAAATACA
* *
50468826 AATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * *
50468880 AATTACCGGAATA-CCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
*
50468933 AATTATCGAAATACACCCCTGTAGGGTAGAATTACCGAAAT-CCCCTATAGGGTAG
1 AATTACCGAAAT--ACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * *
50468988 AATTATCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
** * * * * *
50469042 AATTACTAAAATAACCCTATAGGATGGAATTACCGAGATACC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACC
50469084 TTGTGGGGTA
Statistics
Matches: 180, Mismatches: 20, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
53 74 0.41
54 57 0.32
55 25 0.14
56 24 0.13
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
Found at i:50469054 original size:109 final size:108
Alignment explanation
Indices: 50468826--50469083 Score: 371
Period size: 109 Copynumber: 2.4 Consensus size: 108
50468816 CCAAAATACA
* * *
50468826 AATTACCAAAAT-ACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCGGA
1 AATTACTAAAATAACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCGCA
50468890 ATACCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
66 ATACCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
50468933 AATTA-TCGAAATACACCCCTGTAGGGTAGAATTACCGAAAT-CCCCTATAGGGTAGAATTATCG
1 AATTACT-AAAATA-ACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCG
*
50468996 CAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
64 CAATA-CCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
50469042 AATTACTAAAATAA-CCCTATAGGATGGAATTACCGAGATACC
1 AATTACTAAAATAACCCCTGTAGGGTAGAATTACCGAAATACC
50469084 TTGTGGGGTA
Statistics
Matches: 134, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
107 30 0.22
108 28 0.21
109 75 0.56
110 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (108 bp):
AATTACTAAAATAACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCGCA
ATACCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:50469582 original size:22 final size:22
Alignment explanation
Indices: 50469528--50469592 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
50469518 TTAAAGCCTT
* *
50469528 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTATGTGCCAAC
* * *
50469550 CT-ACATGTGGCTCTGTGCCAAC
1 CTGA-TTATGGCTATGTGCCAAC
50469572 CTGATTATGGCTATGTGCCAA
1 CTGATTATGGCTATGTGCCAA
50469593 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTATGTGCCAAC
Found at i:50469781 original size:27 final size:27
Alignment explanation
Indices: 50469751--50469852 Score: 136
Period size: 27 Copynumber: 3.8 Consensus size: 27
50469741 ATTCTGTTAA
*
50469751 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
50469778 GTGG-TTATGCCACAAATATCTG-TTCTG
1 GTGGCTT-TGCCAC-AATATCTGTTTCTG
*
50469805 GTGGCTTTGCCACAATATCTGTATCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
* *
50469832 GTGACTTTGTCACAATATCTG
1 GTGGCTTTGCCACAATATCTG
50469853 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
26 10 0.15
27 48 0.72
28 9 0.13
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.39
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTGTTTCTG
Found at i:50470027 original size:6 final size:6
Alignment explanation
Indices: 50470012--50470099 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
50470002 ATTCTGTTAC
* * * *
50470012 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTAATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
*
50470061 CTGATT CTG-TCAC CT-ACTT CTGATT CTGATT CTGATT CT
1 CTGATT CTGAT--T CTGA-TT CTGATT CTGATT CTGATT CT
50470100 AGTTTTGATA
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
5 3 0.05
6 54 0.83
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:50470040 original size:31 final size:31
Alignment explanation
Indices: 50470002--50470099 Score: 144
Period size: 31 Copynumber: 3.2 Consensus size: 31
50469992 CTGATTTTTT
*
50470002 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
*
50470033 ATTCTGTTACCTGATACTAATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* *
50470064 ATTCTGTCACCT-ACTTCTGATTCTGATTCTG
1 ATTCTGTTACCTGA-TACTGATTCTGATTCTG
50470095 ATTCT
1 ATTCT
50470100 AGTTTTGATA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
30 1 0.02
31 60 0.98
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:50471410 original size:25 final size:25
Alignment explanation
Indices: 50471372--50471444 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
50471362 CATATATAGA
* *
50471372 TATGCTTATACGAGCTGTAATTCGG
1 TATGCTCACACGAGCTGTAATTCGG
* *
50471397 TATGCTCACTCGAGCTATAGATT-GG
1 TATGCTCACACGAGCTGTA-ATTCGG
* *
50471422 TATGCTCTCACAAGCTGTAATTC
1 TATGCTCACACGAGCTGTAATTC
50471445 TGTAACAGCC
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
24 3 0.08
25 32 0.84
26 3 0.08
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (25 bp):
TATGCTCACACGAGCTGTAATTCGG
Found at i:50472819 original size:86 final size:85
Alignment explanation
Indices: 50472693--50472850 Score: 203
Period size: 86 Copynumber: 1.8 Consensus size: 85
50472683 ATGTGTTATC
* * * * *
50472693 GTGTAAGACCATGTCTGGGACATTGGCATTGATTCATGATTCACATGTAAGACCATGCTT-GGGA
1 GTGTAAGACCATATCTGGGACAATGGCATCGATTCATGATT-ACATGTAAGACCACG-TTAAGGA
50472757 CATTGGCATCGTATATGATTTT
64 CATTGGCATCGTATATGATTTT
* **
50472779 GTGTAAGACCCTATCTGGGACAATGGCATCGATATC-TGATTTTATGTAAGACCACGTTAAGGAC
1 GTGTAAGACCATATCTGGGACAATGGCATCGAT-TCATGATTACATGTAAGACCACGTTAAGGAC
50472843 ATTGGCAT
65 ATTGGCAT
50472851 TGTACGAGCT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
84 2 0.03
85 24 0.39
86 34 0.55
87 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (85 bp):
GTGTAAGACCATATCTGGGACAATGGCATCGATTCATGATTACATGTAAGACCACGTTAAGGACA
TTGGCATCGTATATGATTTT
Found at i:50472830 original size:43 final size:43
Alignment explanation
Indices: 50472694--50472831 Score: 140
Period size: 43 Copynumber: 3.2 Consensus size: 43
50472684 TGTGTTATCG
* * * **
50472694 TGTAAGACCATGTCTGGGACATTGGCATTGAT-TCATGATTCACA
1 TGTAAGACCCTATCTGGGACATTGGCATCGATATC-TGATT-TTA
* *
50472738 TGTAAGA-CC-ATGCTTGGGACATTGGCATCG-TATATGATTTTG
1 TGTAAGACCCTAT-C-TGGGACATTGGCATCGATATCTGATTTTA
*
50472780 TGTAAGACCCTATCTGGGACAATGGCATCGATATCTGATTTTA
1 TGTAAGACCCTATCTGGGACATTGGCATCGATATCTGATTTTA
50472823 TGTAAGACC
1 TGTAAGACC
50472832 ACGTTAAGGA
Statistics
Matches: 78, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
42 23 0.29
43 30 0.38
44 25 0.32
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (43 bp):
TGTAAGACCCTATCTGGGACATTGGCATCGATATCTGATTTTA
Found at i:50472843 original size:43 final size:41
Alignment explanation
Indices: 50472694--50472850 Score: 129
Period size: 43 Copynumber: 3.7 Consensus size: 41
50472684 TGTGTTATCG
* * **
50472694 TGTAAGACCATGTCTGGGACATTGGCATTG-ATTCATGATTCACA
1 TGTAAGACCACGT-TGGGACATTGGCATCGTA-T-ATGATT-TTA
* *
50472738 TGTAAGACCATGCTTGGGACATTGGCATCGTATATGATTTTG
1 TGTAAGACCACG-TTGGGACATTGGCATCGTATATGATTTTA
* * *
50472780 TGTAAGACC-CTATCTGGGACAATGGCATCGATATCTGATTTTA
1 TGTAAGACCAC-GT-TGGGACATTGGCATCG-TATATGATTTTA
*
50472823 TGTAAGACCACGTTAAGGACATTGGCAT
1 TGTAAGACCACGTT-GGGACATTGGCAT
50472851 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 37 0.39
44 29 0.31
45 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (41 bp):
TGTAAGACCACGTTGGGACATTGGCATCGTATATGATTTTA
Found at i:50476558 original size:27 final size:27
Alignment explanation
Indices: 50476514--50476585 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
50476504 GTCACCAGAT
**
50476514 ACAGATATTTTGTGGCAGTTCCACCACA
1 ACAGATA-TTTGTGGCAGGGCCACCACA
* *
50476542 ACAGATATATGTGGCAGGGCCACCAGA
1 ACAGATATTTGTGGCAGGGCCACCACA
50476569 ACAGATAATTTGTGGCA
1 ACAGAT-ATTTGTGGCA
50476586 TAGCCACGGG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGGGCCACCACA
Found at i:50476591 original size:28 final size:27
Alignment explanation
Indices: 50476506--50476592 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
50476496 GTGACAGAGT
* *
50476506 CACCAGATACAGATATTTTGTGGCAGTTC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* * *
50476535 CACCACAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
50476562 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
50476590 CAC
1 CAC
50476593 GGGGACGCTT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
27 22 0.46
28 20 0.42
29 6 0.12
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:50477567 original size:27 final size:27
Alignment explanation
Indices: 50477536--50477996 Score: 626
Period size: 27 Copynumber: 17.1 Consensus size: 27
50477526 AAGTACTCCT
50477536 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* ** * *
50477563 TATTTGTAAAATTACCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
50477590 -AGTTTACAGAATTACCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
50477617 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
50477644 GATTTACAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** *
50477671 GATTTTTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
50477698 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* **
50477725 -AGTTTA-AGAATTACTGTCGTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
*
50477751 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** *
50477778 GATTTGTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
50477805 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
**
50477832 -ATTTACAGAATTACTATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
50477858 GATTTACAGAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
50477885 -AGTTTACAGAATTACTGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
50477912 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** * *
50477939 GATTTGTAAAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
*
50477966 GATTTACAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
50477993 GATT
1 GATT
50477997 GTGAAATTAC
Statistics
Matches: 384, Mismatches: 42, Indels: 16
0.87 0.10 0.04
Matches are distributed among these distances:
26 48 0.12
27 334 0.87
28 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTC
Found at i:50477778 original size:107 final size:108
Alignment explanation
Indices: 50477536--50478006 Score: 663
Period size: 107 Copynumber: 4.4 Consensus size: 108
50477526 AAGTACTCCT
* *
50477536 GATTTACAGAATTACCGTTTTACCCTCTATTTGTAAAATTACCATTTTACCCTC-AGTTTACAGA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGA-TTTACAGA
50477600 ATTACCGTTTTACCCTC-GATTTACAGAATTACCGTTTTACCCTC
65 ATTACCGTTTTACCCTCAG-TTTACAGAATTACCGTTTTACCCTC
* * *
50477644 GATTTACAGAATTACCATTTTACCCTCGATTTTTAAAATTACCGTTTTACCCTCGATTTATAGAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAA
* **
50477709 TTACCGTTTTACCCTCAGTTTA-AGAATTACTGTCGTACCCTC
66 TTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTC
*
50477751 GATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAA
**
50477816 TTACCGTTTTACCCTCA-TTTACAGAATTACTATTTTACCCTC
66 TTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTC
* * *
50477858 GATTTACAGAATTATCGTTTTACCCTC-AGTT-TACAGAATTACTGTTTTACCCTCGATTTACAG
1 GATTTACAGAATTACCGTTTTACCCTCGATTTGTA-A-AATTACCGTTTTACCCTCGATTTACAG
* *
50477921 AATTACCGTTTTACCCTCGATTTGTA-A-AATTACCGTTTTACCCTT
64 AATTACCGTTTTACCCTC-AGTT-TACAGAATTACCGTTTTACCCTC
* *
50477966 GATTTACAGAATTACCGTTTTACCCTTGA-TTGTGAAATTAC
1 GATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAATTAC
50478007 TGAAATACCC
Statistics
Matches: 328, Mismatches: 25, Indels: 21
0.88 0.07 0.06
Matches are distributed among these distances:
105 2 0.01
106 8 0.02
107 187 0.57
108 122 0.37
109 7 0.02
110 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (108 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAA
TTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTC
Found at i:50478037 original size:26 final size:27
Alignment explanation
Indices: 50478008--50478192 Score: 223
Period size: 27 Copynumber: 6.9 Consensus size: 27
50477998 TGAAATTACT
50478008 GAAATACCCCTGTAGGGTAGAATT-TC
1 GAAATACCCCTGTAGGGTAGAATTATC
*
50478034 GAAATACCCCTATAGGGTAGAATTA-C
1 GAAATACCCCTGTAGGGTAGAATTATC
* * * *
50478060 TGAAATACCCTTATAGGATAGAATTACC
1 -GAAATACCCCTGTAGGGTAGAATTATC
*
50478088 AAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTATC
* * *
50478115 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTATC
50478142 GAAATA-CCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTATC
* * * *
50478168 GAGATACCCTTGTGGGGTAAAATTA
1 GAAATACCCCTGTAGGGTAGAATTA
50478193 CCATTTTGCC
Statistics
Matches: 136, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
26 46 0.34
27 89 0.65
28 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTATC
Found at i:50478058 original size:53 final size:53
Alignment explanation
Indices: 50478008--50478191 Score: 237
Period size: 53 Copynumber: 3.5 Consensus size: 53
50477998 TGAAATTACT
* * *
50478008 GAAATACCCCTGTAGGGTAGAATTTCGAAATACCCCTATAGGGTAGAATTA-C
1 GAAATACCCTTGTAGGGTAGAATTCCGAAATACCCCTGTAGGGTAGAATTATC
* * *
50478060 TGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAGAATTATC
1 -GAAATACCCTTGTAGGGTAGAATT-CCGAAATACCCCTGTAGGGTAGAATTATC
*
50478115 GAAATACCCTTGTAGGGTAGAAATACCGAAATA-CCCTGTAGGGTAGAATTATC
1 GAAATACCCTTGTAGGGTAG-AATTCCGAAATACCCCTGTAGGGTAGAATTATC
* * *
50478168 GAGATACCCTTGTGGGGTAAAATT
1 GAAATACCCTTGTAGGGTAGAATT
50478192 ACCATTTTGC
Statistics
Matches: 114, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
52 3 0.03
53 58 0.51
54 49 0.43
55 4 0.04
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.26
Consensus pattern (53 bp):
GAAATACCCTTGTAGGGTAGAATTCCGAAATACCCCTGTAGGGTAGAATTATC
Found at i:50478175 original size:80 final size:81
Alignment explanation
Indices: 50478009--50478192 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 81
50477999 GAAATTACTG
* *
50478009 AAATACCCCTGTAGGGTAGAATT-TCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTTA
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCTTA
50478073 TAGGATAGAATTACCA
66 TAGGATAGAATTACCA
* * *
50478089 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCC-TG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCTTA
* * *
50478153 TAGGGTAGAATTATCG
66 TAGGATAGAATTACCA
* * * *
50478169 AGATACCCTTGTGGGGTAAAATTA
1 AAATACCCCTGTAGGGTAGAATTA
50478193 CCATTTTGCC
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 57 0.63
81 34 0.37
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCTTA
TAGGATAGAATTACCA
Found at i:50478429 original size:27 final size:26
Alignment explanation
Indices: 50478391--50478473 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
50478381 CGGAGGAAGC
*
50478391 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
50478418 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
50478444 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
50478471 GTT
1 GTT
50478474 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:50478593 original size:22 final size:22
Alignment explanation
Indices: 50478568--50478619 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
50478558 TTAATAGCTC
50478568 TGTGCCAACCTAAATATGGCTT
1 TGTGCCAACCTAAATATGGCTT
* * * *
50478590 TGTGCCATCTTGACTATGGCTT
1 TGTGCCAACCTAAATATGGCTT
50478612 TGTGCCAA
1 TGTGCCAA
50478620 ACGTATTTAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (22 bp):
TGTGCCAACCTAAATATGGCTT
Found at i:50478805 original size:27 final size:27
Alignment explanation
Indices: 50478783--50478856 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
50478773 TAGGTGGGTT
*
50478783 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
50478810 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
50478837 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
50478857 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:50478983 original size:6 final size:6
Alignment explanation
Indices: 50478974--50479153 Score: 151
Period size: 6 Copynumber: 29.8 Consensus size: 6
50478964 TTGCATTCAC
* * * *
50478974 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTA ATTCTG ATTCTG ATTATG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
*
50479023 -TTACTG ATTCTG ATTCTG ATTATG -TTACTG ATTCTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
50479071 -TCACCTA ATTCTG ATT-TG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG
50479119 ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
50479154 CATTTTGGTT
Statistics
Matches: 143, Mismatches: 14, Indels: 34
0.75 0.07 0.18
Matches are distributed among these distances:
5 16 0.11
6 113 0.79
7 11 0.08
8 3 0.02
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:50479171 original size:30 final size:30
Alignment explanation
Indices: 50479050--50479174 Score: 148
Period size: 30 Copynumber: 4.2 Consensus size: 30
50479040 GATTATGTTA
*
50479050 CTGATTCTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTGTTACC-AATT
*
50479081 CTGATT-TGATTCTGATTCTGTTACTAATAT
1 CTGATTCTGATTCTGATTCTGTTACCAAT-T
**
50479111 -TGATTCTGATTCTGATTCTGTTACTGATT
1 CTGATTCTGATTCTGATTCTGTTACCAATT
* *
50479140 CTGATTCTGATTCTCATTTTGGTT-CCAATT
1 CTGATTCTGATTCTGATTCT-GTTACCAATT
50479170 CTGAT
1 CTGAT
50479175 AATGTTTCTT
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
29 9 0.11
30 65 0.78
31 9 0.11
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (30 bp):
CTGATTCTGATTCTGATTCTGTTACCAATT
Found at i:50481117 original size:27 final size:27
Alignment explanation
Indices: 50481087--50481656 Score: 631
Period size: 27 Copynumber: 21.1 Consensus size: 27
50481077 AAGTACTCCT
50481087 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
*
50481114 GATTTATAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
** * *
50481141 GATTTGTAAAATTA-TCATTTTACCCTC
1 GATTTACAGAATTACT-GTTTTACCCTC
*
50481168 -AGTTTACAGAATTACCGTTTTACCCTC
1 GA-TTTACAGAATTACTGTTTTACCCTC
**
50481195 GATTTACAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
*
50481222 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
50481249 GATTTACAGAATTA-TCGTTTTACCCTC
1 GATTTACAGAATTACT-GTTTTACCCTC
* ** *
50481276 AATTTTTAAAATTA-TCGTTTTACCCTC
1 GATTTACAGAATTACT-GTTTTACCCTC
* *
50481303 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
*
50481330 AATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
* * *
50481357 GATTTATAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
** *
50481384 GATTTGTAAAATTAAC-GTTTTACCCTC
1 GATTTACAGAATT-ACTGTTTTACCCTC
50481411 GATTTACAG-ATTA-TCGTTTTACCCTC
1 GATTTACAGAATTACT-GTTTTACCCTC
*
50481437 -AGTTTACAGAATTACTATTTTACCCTC
1 GA-TTTACAGAATTACTGTTTTACCCTC
*
50481464 GATTTACAGAATTACTATTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
*
50481491 -AGTTTACAGAATTACTATTTTACCCTC
1 GA-TTTACAGAATTACTGTTTTACCCTC
**
50481518 GATTTACAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
** * * *
50481545 GATTTGTAAAATTACCGTTTTACCCTT
1 GATTTACAGAATTACTGTTTTACCCTC
*
50481572 GATTTACAGAATTACTGGTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
*
50481599 -AGTTTACAAAATTA-TCGTTTTACCCTC
1 GA-TTTACAGAATTACT-GTTTTACCCTC
* * * *
50481626 AATTTATAGAATTACAGTTTTACCCTT
1 GATTTACAGAATTACTGTTTTACCCTC
50481653 GATT
1 GATT
50481657 GTGAAATTAC
Statistics
Matches: 473, Mismatches: 51, Indels: 38
0.84 0.09 0.07
Matches are distributed among these distances:
25 2 0.00
26 26 0.05
27 438 0.93
28 7 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACTGTTTTACCCTC
Found at i:50481847 original size:27 final size:27
Alignment explanation
Indices: 50481661--50481856 Score: 196
Period size: 27 Copynumber: 7.3 Consensus size: 27
50481651 TTGATTGTGA
* * *
50481661 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*** * * *
50481688 AATTTTAGAAATACCCCTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
50481715 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
50481742 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
50481769 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
50481796 AAATACCGAAACACTCC-TGTAGGGTAG
1 AATTACCGAAATAC-CCTTGTAGGGTAG
* * *
50481823 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
50481850 AATTACC
1 AATTACC
50481857 ATTTTACCCC
Statistics
Matches: 143, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 2 0.01
27 139 0.97
28 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:50482098 original size:27 final size:26
Alignment explanation
Indices: 50482056--50482134 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
50482046 GGAGGAAGCG
*
50482056 TTCTGGTGGCTATGCCACAAATATCTA
1 TTCTGGTGGCTCTGCCAC-AATATCTA
50482083 TTCTGGTGGCTCTGCCACAATATCTGTA
1 TTCTGGTGGCTCTGCCACAATATC--TA
* *
50482111 TT-TGGTGACTCTGTCACAATATCT
1 TTCTGGTGGCTCTGCCACAATATCT
50482135 GTTGACCGAT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 1 0.02
26 6 0.13
27 36 0.77
28 4 0.09
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.37
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTA
Found at i:50482470 original size:27 final size:27
Alignment explanation
Indices: 50482448--50482521 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
50482438 TAGGTGGGTT
*
50482448 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
50482475 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
50482502 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
50482522 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:50482648 original size:6 final size:6
Alignment explanation
Indices: 50482639--50482795 Score: 128
Period size: 6 Copynumber: 25.8 Consensus size: 6
50482629 TTGCATTCAC
* * * *
50482639 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTA ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
50482688 -TTACTG ATTCTG ATTCTG ATTTTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
50482737 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
50482785 ATTCTG ATTCT
1 ATTCTG ATTCT
50482796 CATTTTGGTT
Statistics
Matches: 123, Mismatches: 14, Indels: 28
0.75 0.08 0.17
Matches are distributed among these distances:
5 9 0.07
6 103 0.84
7 8 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:50482723 original size:55 final size:55
Alignment explanation
Indices: 50482639--50482766 Score: 195
Period size: 55 Copynumber: 2.3 Consensus size: 55
50482629 TTGCATTCAC
* *
50482639 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTAATTCTAATTCTGTTACTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTAATTCTAATTCTGTTACTA
* * *
50482694 ATTCTGATTCTGATTTTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTA
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTAATTCTAATTCTGTTACTA
50482749 ATAT-TGATTCTGATTCTG
1 AT-TCTGATTCTGATTCTG
50482767 ATTCTGTTAC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
55 65 0.98
56 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.48
Consensus pattern (55 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTAATTCTAATTCTGTTACTA
Found at i:50482813 original size:30 final size:30
Alignment explanation
Indices: 50482639--50482816 Score: 165
Period size: 30 Copynumber: 6.1 Consensus size: 30
50482629 TTGCATTCAC
* *
50482639 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-CAATTCTG
* *
50482670 ATTCTAATTCTAATTCTGTT----A--CTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
50482694 ATTCTGATTCTGATTTTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
*
50482725 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACCAAT-TCTG
**
50482755 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
50482785 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
50482815 AT
1 AT
50482817 AATGTTTCTT
Statistics
Matches: 122, Mismatches: 15, Indels: 21
0.77 0.09 0.13
Matches are distributed among these distances:
24 19 0.16
26 1 0.01
29 2 0.02
30 56 0.46
31 44 0.36
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:50483525 original size:29 final size:28
Alignment explanation
Indices: 50483438--50483531 Score: 161
Period size: 28 Copynumber: 3.3 Consensus size: 28
50483428 AAATTAACCC
* *
50483438 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
50483466 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
50483494 TAGGGGTATAATGGTAATTTTTGCATACA
1 TAGGGGTATAATGGTAA-TTTTGCATACA
50483523 TAGGGGTAT
1 TAGGGGTAT
50483532 TCTAGTACAT
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
28 43 0.68
29 20 0.32
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:50489923 original size:40 final size:40
Alignment explanation
Indices: 50489874--50489976 Score: 170
Period size: 40 Copynumber: 2.6 Consensus size: 40
50489864 CGAGTTATGG
*
50489874 TATCCGGGCCAAAACCCGAAGGCATTTATGCTAGTGACTA
1 TATCCGGGCCAAAACCCGAAGGCATTTATGCTAGTGACCA
*
50489914 TATCTGGGCCAAAACCCGAAGGCATTTATGCTAGTGACCA
1 TATCCGGGCCAAAACCCGAAGGCATTTATGCTAGTGACCA
* *
50489954 TATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCCAAAACCCGAAGGC
50489977 CTTGTTCGAA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.20
Consensus pattern (40 bp):
TATCCGGGCCAAAACCCGAAGGCATTTATGCTAGTGACCA
Found at i:50489933 original size:80 final size:80
Alignment explanation
Indices: 50489826--50489976 Score: 185
Period size: 80 Copynumber: 1.9 Consensus size: 80
50489816 CTTTGTGTTA
* * * * * ***
50489826 AGTGACTGTATCTGGACTAAGATCCGAAGGCAATTATGCGAGTTATGGTATCCGGGCCAAAACCC
1 AGTGACTATATCTGGACCAAAACCCGAAGGCAATTATGCGAGTGACCATATCCGGGCCAAAACCC
50489891 GAAGGCATTTATGCT
66 GAAGGCATTTATGCT
* * * * *
50489906 AGTGACTATATCTGGGCCAAAACCCGAAGGCATTTATGCTAGTGACCATATCCGGGCTAAGACCC
1 AGTGACTATATCTGGACCAAAACCCGAAGGCAATTATGCGAGTGACCATATCCGGGCCAAAACCC
50489971 GAAGGC
66 GAAGGC
50489977 CTTGTTCGAA
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 58 1.00
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.23
Consensus pattern (80 bp):
AGTGACTATATCTGGACCAAAACCCGAAGGCAATTATGCGAGTGACCATATCCGGGCCAAAACCC
GAAGGCATTTATGCT
Found at i:50501676 original size:46 final size:45
Alignment explanation
Indices: 50501566--50501776 Score: 185
Period size: 46 Copynumber: 4.6 Consensus size: 45
50501556 AGATTTGTGT
* * * *
50501566 GCCAGTGTAAGACCATGTATGGGACATGGCATCGG-CATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CAGATGAGA
* * *
50501614 GCTAGTGTAAGTCATGTCTGGGACATGCATCAGCCACAGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAG-ATGAGA
* * * **
50501660 GCCACTGTAAGACATGTCTGGGACATGTATCGGCCTCGAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGATGAGA
* * * *
50501706 GCCAGTGTCAGACATGTCTGGGACATGCGTCGGCTAC-GA-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGA-GA
*
50501750 GCTAGTGTAAGACATGTCTGGGACATG
1 GCCAGTGTAAGACATGTCTGGGACATG
50501777 TGTCAGCACG
Statistics
Matches: 133, Mismatches: 26, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
43 1 0.01
44 27 0.20
45 2 0.02
46 76 0.57
47 17 0.13
48 10 0.08
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGA
Found at i:50505239 original size:46 final size:46
Alignment explanation
Indices: 50505187--50505362 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
50505177 TGGTTGAGCA
*
50505187 TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
50505233 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
50505278 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
50505326 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50505363 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50505343 original size:93 final size:93
Alignment explanation
Indices: 50505184--50505354 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
50505174 GGATGGTTGA
* **
50505184 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50505249 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
50505277 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50505342 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
50505355 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:50507554 original size:40 final size:40
Alignment explanation
Indices: 50507510--50507595 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
50507500 ACTAAGATCT
* ***
50507510 GAAGGCAATTATGCGAGTTATGGTATCCGGGCCAAAACCC
1 GAAGGCAATTATGCGAGTGACCATATCCGGGCCAAAACCC
* * * *
50507550 GAAGGCATTTATGCTAGTGACCATATCCGGGCTAAGACCC
1 GAAGGCAATTATGCGAGTGACCATATCCGGGCCAAAACCC
50507590 GAAGGC
1 GAAGGC
50507596 CTTGTGTGAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.29, C:0.23, G:0.28, T:0.20
Consensus pattern (40 bp):
GAAGGCAATTATGCGAGTGACCATATCCGGGCCAAAACCC
Found at i:50510963 original size:2 final size:2
Alignment explanation
Indices: 50510956--50510998 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
50510946 GCAAACAAGC
50510956 AG AG AG AG AG AG AG AG AG -G AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
50510997 AG
1 AG
50510999 CTCAATTCAG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:50512569 original size:29 final size:29
Alignment explanation
Indices: 50512536--50512609 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
50512526 GTGACGAGAT
50512536 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
50512565 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
50512594 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50512610 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:50512625 original size:29 final size:29
Alignment explanation
Indices: 50512593--50512668 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
50512583 CTGGAAATAT
* *
50512593 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
50512622 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
50512651 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
50512669 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:50512636 original size:58 final size:58
Alignment explanation
Indices: 50512536--50512668 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
50512526 GTGACGAGAT
* * * * * *
50512536 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
50512594 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
50512652 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
50512669 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:50520451 original size:29 final size:29
Alignment explanation
Indices: 50520418--50520549 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
50520408 GTGACGAGAT
*
50520418 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
50520447 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
50520476 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
50520505 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
50520534 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50520550 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:50523042 original size:20 final size:20
Alignment explanation
Indices: 50523017--50523073 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 20
50523007 TTTCTTGATC
50523017 TTTATAATAATTCAATTCAA
1 TTTATAATAATTCAATTCAA
* *
50523037 TTTATAA-ATTTCACATTCAC
1 TTTATAATAATTCA-ATTCAA
50523057 TTTA-AATTCAATTCAAT
1 TTTATAA-T-AATTCAAT
50523074 GTATAAGACC
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
19 7 0.23
20 16 0.53
21 2 0.07
22 5 0.17
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTATAATAATTCAATTCAA
Found at i:50530511 original size:27 final size:27
Alignment explanation
Indices: 50530465--50530711 Score: 278
Period size: 27 Copynumber: 9.1 Consensus size: 27
50530455 ATTACTGAAA
* * * ***
50530465 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAGAATTACCATTT
* *
50530492 TACCCTCGATTTATAGAATTGCCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
50530519 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
50530546 TACCATTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
50530573 TACCCTCGATTTACAAAATCACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
50530600 TATCTTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
50530627 TACTCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
50530654 TACCCTCGATTTATAGAATTAACATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
50530681 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
50530708 TACC
1 TACC
50530712 GCTAGGATGT
Statistics
Matches: 179, Mismatches: 41, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 179 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:50530645 original size:108 final size:108
Alignment explanation
Indices: 50530497--50530709 Score: 336
Period size: 108 Copynumber: 2.0 Consensus size: 108
50530487 CAAAGTACCC
* *
50530497 TCGATTTATAGAATTGCCGTTTTACCCTCGATTTACAGAATTACTATTTTACCATTGATTTATAG
1 TCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCATCGATTTATAG
* *
50530562 AATTACCATTTTACCCTCGATTTACAAAATCACTATTTTATCT
66 AATTAACATTTTACCCTCGATTTACAAAATCACCATTTTATCT
* * * *
50530605 TCGATTTATAGAATTATCGTTTTACTCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAG
1 TCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCATCGATTTATAG
* *
50530670 AATTAACATTTTACCCTCGATTTATAAAATTACCATTTTA
66 AATTAACATTTTACCCTCGATTTACAAAATCACCATTTTA
50530710 CCGCTAGGAT
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
108 95 1.00
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.44
Consensus pattern (108 bp):
TCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCATCGATTTATAG
AATTAACATTTTACCCTCGATTTACAAAATCACCATTTTATCT
Found at i:50531249 original size:25 final size:25
Alignment explanation
Indices: 50531218--50531315 Score: 97
Period size: 25 Copynumber: 3.7 Consensus size: 25
50531208 TTGCATTCAC
*
50531218 ATTCTGATTTTGATTCTTTTACCTG
1 ATTCTGATTCTGATTCTTTTACCTG
* *
50531243 ATACTGATTCTAATTCTACTTCTGTCACCTG
1 ATTCTGATTCTGA-T-T-CTT-T-T-ACCTG
* *
50531274 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTTTTACCTG
50531299 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
50531316 CATTTTGATT
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
25 32 0.53
26 1 0.02
27 2 0.03
28 5 0.08
29 2 0.03
30 2 0.03
31 16 0.27
ACGTcount: A:0.18, C:0.21, G:0.12, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTTTTACCTG
Found at i:50531280 original size:6 final size:6
Alignment explanation
Indices: 50531271--50531336 Score: 64
Period size: 6 Copynumber: 10.8 Consensus size: 6
50531261 CTTCTGTCAC
* *
50531271 CTGATT CTGATT CTGATT CTG-TCAC CTGATT CTGATT CTGATT CTCATT
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT
*
50531320 TTGATT CT-AGTT CTGAT
1 CTGATT CTGA-TT CTGAT
50531337 AATGTTTCTT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
5 2 0.04
6 42 0.86
7 4 0.08
8 1 0.02
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:50531306 original size:31 final size:30
Alignment explanation
Indices: 50531218--50531315 Score: 91
Period size: 31 Copynumber: 3.4 Consensus size: 30
50531208 TTGCATTCAC
* * *
50531218 ATTCTGATTTTGATTCTTTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGAT-CTG
*
50531249 ATTCTAATTCT-ACTTCTGTCA-C----CTG
1 ATTCTGATTCTGA-TTCTGTCACCTGATCTG
50531274 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGA-TCTG
50531305 ATTCTGATTCT
1 ATTCTGATTCT
50531316 CATTTTGATT
Statistics
Matches: 54, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
25 21 0.39
26 2 0.04
30 2 0.04
31 29 0.54
ACGTcount: A:0.18, C:0.21, G:0.12, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACCTGATCTG
Found at i:50533293 original size:6 final size:6
Alignment explanation
Indices: 50533282--50533374 Score: 100
Period size: 6 Copynumber: 15.3 Consensus size: 6
50533272 TTGTCACCTA
*
50533282 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
50533330 -TCACCTG ATTCTG ATTCTA ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
50533375 AATGTTTCTT
Statistics
Matches: 73, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
5 2 0.03
6 66 0.90
7 4 0.05
8 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:50533320 original size:55 final size:55
Alignment explanation
Indices: 50533226--50533374 Score: 185
Period size: 55 Copynumber: 2.7 Consensus size: 55
50533216 TTGCATTCAC
* * *
50533226 ATTCTGATTTTGATTCTG-TTCCCTGATACTAATTCTGATTCT-ACTTTTGTCACCTA
1 ATTCTGATTCTGATTCTGATT--CTGATTCTAATTCTGATTCTGA-TTCTGTCACCTA
*
50533282 ATTCTGATTCTGATTCTGATTCTGATTCTAATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGATTCTGATTCTAATTCTGATTCTGATTCTGTCACCTA
* * * *
50533337 ATTCTGATTCTAATTCTCATTTTGATTCTAGTTCTGAT
1 ATTCTGATTCTGATTCTGATTCTGATTCTAATTCTGAT
50533375 AATGTTTCTT
Statistics
Matches: 83, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
55 63 0.76
56 18 0.22
57 2 0.02
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.49
Consensus pattern (55 bp):
ATTCTGATTCTGATTCTGATTCTGATTCTAATTCTGATTCTGATTCTGTCACCTA
Found at i:50534431 original size:17 final size:17
Alignment explanation
Indices: 50534406--50534447 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
50534396 TGCTCGTGTG
* *
50534406 GGCCTACACGCCCCTGT
1 GGCCCACACGCCCATGT
50534423 GGCCCACACGCCCATGT
1 GGCCCACACGCCCATGT
50534440 GGCCCACA
1 GGCCCACA
50534448 TGACCCAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.17, C:0.48, G:0.24, T:0.12
Consensus pattern (17 bp):
GGCCCACACGCCCATGT
Found at i:50540358 original size:17 final size:18
Alignment explanation
Indices: 50540316--50540364 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
50540306 AGTTGAAAAG
50540316 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
50540335 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
50540352 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
50540365 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:50541251 original size:40 final size:40
Alignment explanation
Indices: 50541185--50541351 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
50541175 AAATTGAATG
* * *
50541185 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
50541224 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
50541264 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
50541304 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
50541344 ATATCCGG
1 ATATCCGG
50541352 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:50549461 original size:66 final size:68
Alignment explanation
Indices: 50549383--50549569 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
50549373 TAGTACCACT
*
50549383 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
50549445 CACG
65 CACG
50549449 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
50549514 ATCACG
63 ATCACG
50549520 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
50549570 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:50549494 original size:71 final size:71
Alignment explanation
Indices: 50549406--50549569 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50549396 CGATTTGTCT
50549406 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50549471 CTTTCA
66 CTTTCA
50549477 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50549542 CTTTCA
66 CTTTCA
50549548 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
50549570 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:50549607 original size:71 final size:70
Alignment explanation
Indices: 50549406--50549603 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
50549396 CGATTTGTCT
* * * *
50549406 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
50549471 CTTTCA
65 CTTTCA
* * * *
50549477 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
50549542 CTTTCA
65 CTTTCA
* *
50549548 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
50549604 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:50557029 original size:71 final size:71
Alignment explanation
Indices: 50556945--50557108 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
50556935 CGATTTGTCT
50556945 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
50557010 CTTTCA
66 CTTTCA
* *
50557016 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
50557081 CTTTCA
66 CTTTCA
50557087 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
50557109 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:50557146 original size:71 final size:70
Alignment explanation
Indices: 50556945--50557142 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
50556935 CGATTTGTCT
* * * * *
50556945 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
50557010 CTTTCA
65 CTTTCA
* * * *
50557016 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
50557081 CTTTCA
65 CTTTCA
* *
50557087 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
50557143 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:50559656 original size:47 final size:47
Alignment explanation
Indices: 50559580--50559752 Score: 231
Period size: 47 Copynumber: 3.7 Consensus size: 47
50559570 ACAATCGATA
* *
50559580 AGTACCCATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTTGG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCGTGG
* *
50559627 AGTACCTATACCATGGCCCATAGCAAAATCAAGGTAACTTATCGTGG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCGTGG
* ** **
50559674 AGTACTTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTC-TCAA
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCGT-GG
* *
50559721 AATACCTATATCATGGCCCGTAGCCAAATCAA
1 AGTACCTATACCATGGCCCGTAGCCAAATCAA
50559753 TGTATTATTC
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 1 0.01
47 110 0.99
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCGTGG
Found at i:50563174 original size:45 final size:45
Alignment explanation
Indices: 50563105--50563195 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
50563095 CCTTGACTCC
*
50563105 TGTGCAAGCTGGACGACACAATAAGACAAAAGAGAGAAAAGAGGG
1 TGTGCAAGCTAGACGACACAATAAGACAAAAGAGAGAAAAGAGGG
*
50563150 TGTGCAAGCTAGACGACACTATAAGACAAAAGAGAGAAAAGAGGG
1 TGTGCAAGCTAGACGACACAATAAGACAAAAGAGAGAAAAGAGGG
50563195 T
1 T
50563196 AAGCTTATAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.46, C:0.13, G:0.30, T:0.11
Consensus pattern (45 bp):
TGTGCAAGCTAGACGACACAATAAGACAAAAGAGAGAAAAGAGGG
Found at i:50564248 original size:67 final size:67
Alignment explanation
Indices: 50564105--50564279 Score: 180
Period size: 70 Copynumber: 2.6 Consensus size: 67
50564095 TAGTACCACC
* * * *
50564105 CATGTGACCTAGCCA-ATTTA-TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
1 CATGTGACCTAGCTACATTTATTCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATC
50564168 ACA
65 ACA
* *
50564171 CATGCGACCTAGCTACATTTATCCTCTCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTA
1 CATGTGACCTAGCTACATTTAT--TCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAA
50564233 TCACA
63 TCACA
**
50564238 CATGTGACCTAGCTACTACATAGTATCTCGTAGCTCTCTTGT
1 CATGTGACCTAGCTAC-ATTTA-T-TCTCGTAGCTCTCTTGT
50564280 ACACATGATG
Statistics
Matches: 92, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
66 13 0.14
67 27 0.29
68 20 0.22
69 3 0.03
70 29 0.32
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.34
Consensus pattern (67 bp):
CATGTGACCTAGCTACATTTATTCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCA
CA
Found at i:50574766 original size:51 final size:51
Alignment explanation
Indices: 50574681--50574930 Score: 317
Period size: 51 Copynumber: 4.9 Consensus size: 51
50574671 GGATACCCGA
* * * *
50574681 TGGCCTGCACATAGTACCAC-CTTTGTAGT-TAAAGCTACCT-TCTTCACAAAG
1 TGGCCTTCACATAGTACCACAC-TTGT-GTCCAAAGCTA-TTATATTCACAAAG
* * * *
50574732 TCGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTAT-TATATTCACAAAG
*
50574784 TGGCCTTCACATAGTACCACACCTGTGTCCAAAGCTATTATATTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAAG
* * *
50574835 TGGCCTTTACATGGTACCATACTTGTGTCCAAAGCTATTATATTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAAG
* *
50574886 TGGCCTTCACATAGTACCACACTTGTGTTCAAAGCTATTTTATTC
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
50574931 CTAAGGTTCA
Statistics
Matches: 176, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
50 1 0.01
51 128 0.73
52 47 0.27
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.31
Consensus pattern (51 bp):
TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAAG
Found at i:50576866 original size:40 final size:40
Alignment explanation
Indices: 50576787--50576944 Score: 162
Period size: 40 Copynumber: 4.0 Consensus size: 40
50576777 TTCGAATGAT
* * * *
50576787 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
50576827 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * *
50576867 ATCCGGACTAAGATCCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
*
50576907 ATCTGGGA-TAAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATC-CGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
50576945 GTAACCGGGC
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 89 0.90
41 9 0.09
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:50576965 original size:80 final size:80
Alignment explanation
Indices: 50576787--50576974 Score: 199
Period size: 80 Copynumber: 2.3 Consensus size: 80
50576777 TTCGAATGAT
* *
50576787 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
50576852 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* * *
50576867 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-GAGCT-ACTAAATCTGGGA-TAAG-TCCCGAAG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATC-CGGACTAAGAT-CCGAAG
* *
50576927 GCATTCGTGCGAGTTACTGTA
61 GCATACGTGCGAGTTACT-AA
*
50576948 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
50576975 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 9, Indels: 16
0.78 0.08 0.14
Matches are distributed among these distances:
79 2 0.02
80 76 0.84
81 13 0.14
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:50583851 original size:39 final size:39
Alignment explanation
Indices: 50583780--50583922 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
50583770 GAATGTTCGA
50583780 GTGATATCCGGGCTAAG-CCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
50583818 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
50583857 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
50583896 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
50583923 CTTTGTGTGG
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
38 16 0.17
39 69 0.73
40 9 0.10
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:50587319 original size:40 final size:40
Alignment explanation
Indices: 50587240--50587397 Score: 171
Period size: 40 Copynumber: 4.0 Consensus size: 40
50587230 TTCGAATGAT
* * * *
50587240 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
50587280 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * *
50587320 ATCCGGACTAAGATCCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
50587360 ATCCGGGA-TAAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCC-GGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
50587398 GTAACCGGGC
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 90 0.90
41 9 0.09
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:50587406 original size:40 final size:40
Alignment explanation
Indices: 50587240--50587424 Score: 166
Period size: 40 Copynumber: 4.6 Consensus size: 40
50587230 TTCGAATGAT
* * * *
50587240 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGGATAAGTCCCGAAGGCATTCGTGC-GAGTTACTAA
* *
50587280 ATCC-GGACTAAGAT-CCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGGA-TAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* * *
50587320 ATCC-GGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGA-TAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
*
50587360 ATCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTACT-AA
* *
50587401 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGATAAGTCCCGAAGGCATT
50587425 TGAATGTGTA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 3 0.02
40 108 0.89
41 11 0.09
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:50587418 original size:80 final size:80
Alignment explanation
Indices: 50587240--50587427 Score: 208
Period size: 80 Copynumber: 2.3 Consensus size: 80
50587230 TTCGAATGAT
* *
50587240 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
50587305 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* *
50587320 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-GAGCT-ACTAAATCCGGGA-TAAG-TCCCGAAG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCC-GGACTAAGAT-CCGAAG
* *
50587380 GCATTCGTGCGAGTTACTGTA
61 GCATACGTGCGAGTTACT-AA
*
50587401 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
50587428 ATGTGTAGCC
Statistics
Matches: 92, Mismatches: 8, Indels: 16
0.79 0.07 0.14
Matches are distributed among these distances:
79 2 0.02
80 77 0.84
81 13 0.14
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:50591312 original size:17 final size:18
Alignment explanation
Indices: 50591265--50591304 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
50591255 TTTTAGTATA
* * *
50591265 GTGGACCCACTTGCCCTT
1 GTGGGCCCACATGCCCGT
50591283 GTGGGCCCACATGCCCGT
1 GTGGGCCCACATGCCCGT
50591301 GTGG
1 GTGG
50591305 CCGACATGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.10, C:0.35, G:0.33, T:0.23
Consensus pattern (18 bp):
GTGGGCCCACATGCCCGT
Found at i:50599642 original size:14 final size:14
Alignment explanation
Indices: 50599623--50599650 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50599613 AGCAAAATTA
50599623 GTACTCATGAAAAT
1 GTACTCATGAAAAT
50599637 GTACTCATGAAAAT
1 GTACTCATGAAAAT
50599651 CCTGCAGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
GTACTCATGAAAAT
Found at i:50600778 original size:13 final size:13
Alignment explanation
Indices: 50600760--50600784 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50600750 GAATGACCAA
50600760 ATGTTTGGCTATG
1 ATGTTTGGCTATG
50600773 ATGTTTGGCTAT
1 ATGTTTGGCTAT
50600785 CTATGTTCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.28, T:0.48
Consensus pattern (13 bp):
ATGTTTGGCTATG
Found at i:50604822 original size:38 final size:39
Alignment explanation
Indices: 50604770--50604912 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
50604760 GAATGTTCGA
50604770 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
50604809 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
50604847 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
50604886 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
50604913 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:50604858 original size:77 final size:79
Alignment explanation
Indices: 50604771--50604952 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
50604761 AATGTTCGAG
50604771 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
50604834 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
50604848 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
50604913 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
50604927 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
50604953 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:50614133 original size:40 final size:40
Alignment explanation
Indices: 50614088--50614254 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
50614078 CGGAATATAA
50614088 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
50614128 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
50614168 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
50614208 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
50614247 CCGGATAT
1 CCGGATAT
50614255 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50614238 original size:80 final size:79
Alignment explanation
Indices: 50614088--50614254 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
50614078 CGGAATATAA
* *
50614088 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
50614153 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
50614168 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
50614230 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
50614247 CCGGATAT
1 CCGGATAT
50614255 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:50615102 original size:17 final size:19
Alignment explanation
Indices: 50615079--50615124 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
50615069 AAGAAGCATG
50615079 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
50615097 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
50615115 AATCATGCTC
1 AATCATGCTC
50615125 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:50618240 original size:71 final size:71
Alignment explanation
Indices: 50618156--50618319 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
50618146 CGATTTGTCT
50618156 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
50618221 CTTTCA
66 CTTTCA
* *
50618227 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
50618292 CTTTCA
66 CTTTCA
50618298 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
50618320 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:50618357 original size:71 final size:70
Alignment explanation
Indices: 50618156--50618353 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
50618146 CGATTTGTCT
* * * * *
50618156 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
50618221 CTTTCA
65 CTTTCA
* * * *
50618227 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
50618292 CTTTCA
65 CTTTCA
* *
50618298 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
50618354 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:50622549 original size:50 final size:50
Alignment explanation
Indices: 50622470--50622699 Score: 236
Period size: 50 Copynumber: 4.6 Consensus size: 50
50622460 ATTGTGAGTA
*
50622470 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGT
* * * **
50622520 C-GGATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-T
1 CACG-TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGT
* * *
50622571 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGT
* * * *
50622621 CACGTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCGGATTGTT-GGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGT
* * *
50622670 CGCATGTGTAGTACTAAGTGTAGGCTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA
50622700 TGCGTATCAG
Statistics
Matches: 150, Mismatches: 21, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 32 0.21
50 74 0.49
51 34 0.23
52 4 0.03
53 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGT
Found at i:50635998 original size:21 final size:21
Alignment explanation
Indices: 50635960--50635999 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
50635950 ATTACTCCAA
*
50635960 AGAAGCCGATTGATCCATCTC
1 AGAAGCCGATTCATCCATCTC
50635981 AGAAGCCGGATTCA-CCATC
1 AGAAGCC-GATTCATCCATC
50636000 AAGACTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (21 bp):
AGAAGCCGATTCATCCATCTC
Found at i:50638007 original size:40 final size:40
Alignment explanation
Indices: 50637949--50638116 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
50637939 TGAATGATAC
* * *
50637949 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
50637989 CCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
50638029 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
50638069 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
50638109 CC-GGCTAA
1 CCGGGCTAA
50638117 ATTCCGAAGA
Statistics
Matches: 112, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 5 0.04
40 105 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:50642766 original size:2 final size:2
Alignment explanation
Indices: 50642759--50642784 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
50642749 CTTGGCTGTC
50642759 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
50642785 CCTTCGAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:50643091 original size:30 final size:30
Alignment explanation
Indices: 50643056--50643117 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
50643046 GCAGAATATG
50643056 CTCTAATACATAAGAACATTTCATCACATA
1 CTCTAATACATAAGAACATTTCATCACATA
50643086 CTCTAATACATAAGAACATTTCATCACATA
1 CTCTAATACATAAGAACATTTCATCACATA
50643116 CT
1 CT
50643118 TCATTATACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.42, C:0.24, G:0.03, T:0.31
Consensus pattern (30 bp):
CTCTAATACATAAGAACATTTCATCACATA
Found at i:50643596 original size:49 final size:49
Alignment explanation
Indices: 50643469--50643685 Score: 352
Period size: 49 Copynumber: 4.5 Consensus size: 49
50643459 CCCTTCGGGA
* *
50643469 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50643516 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50643563 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50643612 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50643661 CTTATCACATATATATACACTTTCA
1 CTTATCACATATATATACACTTTCA
50643686 TGTACAGACT
Statistics
Matches: 156, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.01
47 49 0.31
49 106 0.68
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50644985 original size:2 final size:2
Alignment explanation
Indices: 50644944--50644976 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
50644934 TAAGGCATAC
50644944 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50644977 CCTATATATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50650048 original size:40 final size:40
Alignment explanation
Indices: 50649993--50650200 Score: 276
Period size: 40 Copynumber: 5.2 Consensus size: 40
50649983 TGAATGATAC
* * *
50649993 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
50650033 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
50650073 CCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
50650113 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * * ** *
50650153 CCGAGTTAAGACCTGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
50650193 CC-GGCTAA
1 CCGGGCTAA
50650201 ATTCCGAAGA
Statistics
Matches: 149, Mismatches: 18, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
39 4 0.03
40 143 0.96
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:50654448 original size:40 final size:41
Alignment explanation
Indices: 50654398--50654493 Score: 126
Period size: 40 Copynumber: 2.4 Consensus size: 41
50654388 TATCTTGGTA
50654398 TCGCACACTTAGTGCC-TCATATAGCCGAAGCTA-TTCCAAC
1 TCGCACACTTAGTGCCAT-ATATAGCCGAAGCTATTTCCAAC
* * *
50654438 TCGCACACTTAGTGCCATTTGTAGCCGAAGCTATTTCGAAC
1 TCGCACACTTAGTGCCATATATAGCCGAAGCTATTTCCAAC
*
50654479 -GGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
50654494 GAACTTAGTC
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
40 43 0.86
41 7 0.14
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATATATAGCCGAAGCTATTTCCAAC
Found at i:50670137 original size:14 final size:13
Alignment explanation
Indices: 50670111--50670148 Score: 60
Period size: 14 Copynumber: 2.9 Consensus size: 13
50670101 ATCCTGGAAT
50670111 ATTAA-AACAAGA
1 ATTAAGAACAAGA
50670123 ATTAAGAACACAGA
1 ATTAAGAACA-AGA
50670137 ATTAAGAACAAG
1 ATTAAGAACAAG
50670149 TCAAATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.21
13 6 0.25
14 13 0.54
ACGTcount: A:0.61, C:0.11, G:0.13, T:0.16
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:50671084 original size:30 final size:30
Alignment explanation
Indices: 50671048--50671107 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
50671038 ACTAAAAGTA
50671048 CATCACAGTTTCAAACGTTCCAAGTTGAGC
1 CATCACAGTTTCAAACGTTCCAAGTTGAGC
*
50671078 CATCACAGTTTCAAACGTTCCATGTTGAGC
1 CATCACAGTTTCAAACGTTCCAAGTTGAGC
50671108 ATTTTATCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (30 bp):
CATCACAGTTTCAAACGTTCCAAGTTGAGC
Found at i:50672711 original size:22 final size:23
Alignment explanation
Indices: 50672657--50672708 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
50672647 TATAAAACCT
50672657 AATAAAAA-TAAG-CTTAAAGAAG
1 AATAAAAAGT-AGTCTTAAAGAAG
50672679 AATAAAAAGTAGTCTTAAA-ATAG
1 AATAAAAAGTAGTCTTAAAGA-AG
50672702 AATAAAA
1 AATAAAA
50672709 GTAAAAACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.63, C:0.04, G:0.12, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAGAAG
Found at i:50678055 original size:25 final size:24
Alignment explanation
Indices: 50678010--50678107 Score: 83
Period size: 25 Copynumber: 4.0 Consensus size: 24
50678000 TGCTTTATCA
**
50678010 TATAACTGGAGGCCTAG-CCTTTTT
1 TATAACTGG-GGCAAAGCCCTTTTT
50678034 TAATAACTGGGGCAAAGCCCTTTTT
1 T-ATAACTGGGGCAAAGCCCTTTTT
* * *
50678059 GATAAACTAGGGCAAAGCCCTTTTCGG
1 TAT-AACTGGGGCAAAGCCCTTTT--T
*
50678086 TA-AACTGGGGCATAGCCCTTTT
1 TATAACTGGGGCAAAGCCCTTTT
50678108 AGCACTTCCT
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
24 8 0.13
25 52 0.85
27 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (24 bp):
TATAACTGGGGCAAAGCCCTTTTT
Found at i:50678057 original size:24 final size:25
Alignment explanation
Indices: 50678025--50678107 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 25
50678015 CTGGAGGCCT
* *
50678025 AGCCTTTTTTAAT-AACTGGGGCAA
1 AGCCCTTTTTGATAAACTGGGGCAA
*
50678049 AGCCCTTTTTGATAAACTAGGGCAA
1 AGCCCTTTTTGATAAACTGGGGCAA
* * *
50678074 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTTTGATAAACTGGGGCAA
50678099 AGCCCTTTT
1 AGCCCTTTT
50678108 AGCACTTCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 11 0.22
25 40 0.78
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (25 bp):
AGCCCTTTTTGATAAACTGGGGCAA
Found at i:50678976 original size:27 final size:27
Alignment explanation
Indices: 50678914--50678977 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
50678904 GGGCATATTC
50678914 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* * *
50678941 GTCACTTTACCTTACGGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
50678968 GTCTTTTTAC
1 GTCATTTTAC
50678978 TTATTAGGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:50679079 original size:27 final size:27
Alignment explanation
Indices: 50679031--50679111 Score: 85
Period size: 27 Copynumber: 2.9 Consensus size: 27
50679021 GGTAATCTAC
50679031 AAACCAAGGGTATTT-TAGTAATTTT-G
1 AAACCAAGGGTATTTCTA-TAATTTTAG
*
50679057 TAAACCAATGGTATTTCTATAATATTTAG
1 -AAACCAAGGGTATTTCTATAAT-TTTAG
* *
50679086 AAAGTCAAGGGTATTTCTGTAATTTT
1 AAA-CCAAGGGTATTTCTATAATTTT
50679112 TTAATCAGGG
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
27 18 0.39
28 11 0.24
29 17 0.37
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTAG
Found at i:50679177 original size:27 final size:26
Alignment explanation
Indices: 50679118--50679181 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
50679108 TTTTTTAATC
*
50679118 AGGGGTATTTTGGTAATTTTACAAAT
1 AGGGGTATTTTGGTAATTCTACAAAT
* **
50679144 TGAGGGTATTTTGGTAATTCTACCCTAT
1 AG-GGGTATTTTGGTAATTCTA-CAAAT
50679172 AGGGGTATTT
1 AGGGGTATTT
50679182 CAGTAATTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.03
27 26 0.84
28 4 0.13
ACGTcount: A:0.25, C:0.08, G:0.25, T:0.42
Consensus pattern (26 bp):
AGGGGTATTTTGGTAATTCTACAAAT
Found at i:50679224 original size:27 final size:27
Alignment explanation
Indices: 50679194--50679285 Score: 148
Period size: 27 Copynumber: 3.4 Consensus size: 27
50679184 GTAATTTCAC
* *
50679194 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
50679221 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
50679248 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
50679275 AATCGAGGGTA
1 AATCGAGGGTA
50679286 CTTTGGTAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:50681902 original size:24 final size:24
Alignment explanation
Indices: 50681873--50681950 Score: 95
Period size: 24 Copynumber: 3.2 Consensus size: 24
50681863 GGAGGCCTAG
50681873 CCTTTTTAAT-AACTGGGCAAAGC
1 CCTTTTTAATAAACTGGGCAAAGC
*
50681896 CCTTTTTGATAAACTGGGCAAAGC
1 CCTTTTTAATAAACTGGGCAAAGC
*** *
50681920 CCTTTTCGGTAAACTGGGGCATAGC
1 CCTTTTTAATAAACT-GGGCAAAGC
50681945 CCTTTT
1 CCTTTT
50681951 AGCACTTCCT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
23 9 0.18
24 26 0.53
25 14 0.29
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (24 bp):
CCTTTTTAATAAACTGGGCAAAGC
Found at i:50681945 original size:25 final size:24
Alignment explanation
Indices: 50681883--50681950 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
50681873 CCTTTTTAAT
*
50681883 AACTGGGCAAAGCCCTTTTTGATA
1 AACTGGGCAAAGCCCTTTTCGATA
*
50681907 AACTGGGCAAAGCCCTTTTCGGTA
1 AACTGGGCAAAGCCCTTTTCGATA
*
50681931 AACTGGGGCATAGCCCTTTT
1 AACT-GGGCAAAGCCCTTTT
50681951 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 26 0.65
25 14 0.35
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.28
Consensus pattern (24 bp):
AACTGGGCAAAGCCCTTTTCGATA
Found at i:50682789 original size:27 final size:26
Alignment explanation
Indices: 50682754--50682809 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
50682744 GGGCATATTC
* *
50682754 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCATACAGGGCT-TTACG
*
50682781 GTCACTTTACCCTACAGGGCTTTACG
1 GTCACTTTACCATACAGGGCTTTACG
50682807 GTC
1 GTC
50682810 TTTTTACCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (26 bp):
GTCACTTTACCATACAGGGCTTTACG
Found at i:50682815 original size:26 final size:27
Alignment explanation
Indices: 50682739--50682817 Score: 85
Period size: 26 Copynumber: 3.0 Consensus size: 27
50682729 TCATACGGAA
50682739 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGC-TATTACGGTCATTTTAC
* *
50682764 CATACAGGGGTATTACGGTCACTTTAC
1 CATACAGGGCTATTACGGTCATTTTAC
* *
50682791 CCTACAGGGCT-TTACGGTCTTTTTAC
1 CATACAGGGCTATTACGGTCATTTTAC
50682817 C
1 C
50682818 TATTAGGGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
25 8 0.18
26 19 0.42
27 18 0.40
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (27 bp):
CATACAGGGCTATTACGGTCATTTTAC
Found at i:50682900 original size:26 final size:27
Alignment explanation
Indices: 50682871--50682977 Score: 96
Period size: 27 Copynumber: 3.9 Consensus size: 27
50682861 GTAAATCTAC
50682871 AAACCAAGGGTA-TTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
50682897 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTT-TAGTAATTTTGT
*
50682923 AGAAAGTCAAGGGTATTTCT-GTAATTTTGT
1 --AAA-CCAAGGGTATTT-TAGTAATTTTGT
* * *
50682953 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTTAGTAATTTT
50682978 ACAAATTGAG
Statistics
Matches: 69, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
26 13 0.19
27 28 0.41
28 8 0.12
29 19 0.28
30 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:50682975 original size:56 final size:54
Alignment explanation
Indices: 50682868--50683003 Score: 141
Period size: 56 Copynumber: 2.5 Consensus size: 54
50682858 TTGGTAAATC
* *
50682868 TACAAACCAAGGGTATTT-AGTAATTTTGTAAACCAATGGTATTTCTATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAA-TTT
* * * * *
50682922 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTT-TGGTAATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCT-ATAATTT
** *
50682977 TACAAATTGAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
50683004 CCAAACTAGT
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
54 23 0.34
55 20 0.29
56 25 0.37
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAATTT
Found at i:50683072 original size:26 final size:27
Alignment explanation
Indices: 50682933--50683085 Score: 131
Period size: 27 Copynumber: 5.8 Consensus size: 27
50682923 AGAAAGTCAA
**
50682933 GGGTATTTCT-GTAATTTTGTAAA-TCAG
1 GGGTATTT-TGGTAATTTTACAAACT-AG
*
50682960 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
50682986 AGGGTATTTCGGTAA-TTTCCAAACTA-
1 -GGGTATTTTGGTAATTTTACAAACTAG
*
50683012 GTGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* **
50683039 GGGTATTTTGGTAATTCTACCTA-TAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
50683065 GGGTA-TTTAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTACAA
50683086 TCGAGGGTAA
Statistics
Matches: 103, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
25 23 0.22
26 27 0.26
27 53 0.51
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:50683080 original size:52 final size:53
Alignment explanation
Indices: 50682932--50683054 Score: 144
Period size: 52 Copynumber: 2.3 Consensus size: 53
50682922 TAGAAAGTCA
* ** *
50682932 AGGGTATTTCTGTAATTTTGTAAA-TCAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAA-TTTCCAAACT-AGGGGTATTTTGGTAATTTTACAAATAG
*
50682986 AGGGTATTTCGGTAATTTCCAAACTA-GTGTATTTTGGTAATTTTACAAACTAG
1 AGGGTATTTCGGTAATTTCCAAACTAGGGGTATTTTGGTAATTTTACAAA-TAG
*
50683039 -GGGTATTTTGGTAATT
1 AGGGTATTTCGGTAATT
50683055 CTACCTATAG
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
52 37 0.61
53 9 0.15
54 15 0.25
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTCCAAACTAGGGGTATTTTGGTAATTTTACAAATAG
Found at i:50683103 original size:26 final size:27
Alignment explanation
Indices: 50683073--50683173 Score: 120
Period size: 27 Copynumber: 3.9 Consensus size: 27
50683063 AGGGGTATTT
*
50683073 AGTAATTTCA-CAATCGAGGGTAAAAC
1 AGTAATTTCATAAATCGAGGGTAAAAC
* *
50683099 GGTAATTTTATAAATCGAGGGTAAAAC
1 AGTAATTTCATAAATCGAGGGTAAAAC
*
50683126 AGTAATTT-ATAAAT-AAGGGTAAAAC
1 AGTAATTTCATAAATCGAGGGTAAAAC
*
50683151 AATAA-TTCTATAAATCGAGGGTA
1 AGTAATTTC-ATAAATCGAGGGTA
50683174 CTTTGGTAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
24 2 0.03
25 14 0.22
26 20 0.31
27 28 0.44
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.28
Consensus pattern (27 bp):
AGTAATTTCATAAATCGAGGGTAAAAC
Done.