Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 184 of 427
Found at i:50683118 original size:27 final size:27
Alignment explanation
Indices: 50683084--50683173 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
50683074 GTAATTTCAC
*
50683084 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACAGTAATTTTATA
50683111 AATCGAGGGTAAAACAGTAA-TTTATA
1 AATCGAGGGTAAAACAGTAATTTTATA
* * *
50683137 AAT-AAGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAACAGTAATTTTATA
50683163 AATCGAGGGTA
1 AATCGAGGGTA
50683174 CTTTGGTAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
25 14 0.25
26 17 0.30
27 25 0.45
ACGTcount: A:0.46, C:0.08, G:0.20, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTTTATA
Found at i:50683121 original size:52 final size:51
Alignment explanation
Indices: 50683065--50683198 Score: 126
Period size: 52 Copynumber: 2.5 Consensus size: 51
50683055 CTACCTATAG
** *
50683065 GGGTATTTAGTAATTTCACAATCGAGGGTAAAACGGTAATTTTATAAATCGA
1 GGGTATTTAGTAATTT-ACAATCGAGGGTAAAACAATAATTCTATAAATCGA
*** * *
50683117 GGGTAAAACAGTAATTTATAAAT-AAGGGTAAAACAATAATTCTATAAATCGA
1 GGGT-ATTTAGTAATTTA-CAATCGAGGGTAAAACAATAATTCTATAAATCGA
*
50683169 GGGTACTTTGGTAATTTTACAAGTCGAGGG
1 GGGTA-TTTAGTAA-TTTACAA-TCGAGGG
50683199 CATTTCTGTA
Statistics
Matches: 62, Mismatches: 14, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
51 1 0.02
52 40 0.65
53 17 0.27
54 4 0.06
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.31
Consensus pattern (51 bp):
GGGTATTTAGTAATTTACAATCGAGGGTAAAACAATAATTCTATAAATCGA
Found at i:50685829 original size:41 final size:41
Alignment explanation
Indices: 50685784--50685901 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
50685774 TGAAAGATAA
50685784 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
50685825 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50685855 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50685896 ATGTAG
1 ATGTAG
50685902 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:50685840 original size:71 final size:71
Alignment explanation
Indices: 50685752--50685915 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50685742 GAGATGTATC
50685752 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50685817 AGGACA
66 AGGACA
50685823 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50685888 AGGACA
66 AGGACA
50685894 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
50685916 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:50693402 original size:41 final size:41
Alignment explanation
Indices: 50693357--50693474 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
50693347 TGAAAGATAA
50693357 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
50693398 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50693428 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50693469 ATGTAG
1 ATGTAG
50693475 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:50693413 original size:71 final size:71
Alignment explanation
Indices: 50693325--50693488 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50693315 GAGATGTATC
50693325 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50693390 AGGACA
66 AGGACA
50693396 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50693461 AGGACA
66 AGGACA
50693467 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
50693489 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:50701030 original size:47 final size:47
Alignment explanation
Indices: 50700977--50701318 Score: 567
Period size: 47 Copynumber: 7.3 Consensus size: 47
50700967 ATAAGATATG
* *
50700977 TATATGTGGTAAAGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
* *
50701024 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATATGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
50701071 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
* *
50701118 TATATGTGATAAGGACGAATGGCCAATGTGACGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
* *
50701165 TATATGTGATAAGGCCAAATGGCCAATGTGACGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
*
50701212 TATATGTGATACGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
* * *
50701259 TATATGTGATAAGGCCAAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
*
50701306 TAAATGTGATAAG
1 TATATGTGATAAG
50701319 TCCCGAAGGG
Statistics
Matches: 277, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 277 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
Found at i:50704975 original size:46 final size:48
Alignment explanation
Indices: 50704662--50704975 Score: 164
Period size: 46 Copynumber: 6.7 Consensus size: 48
50704652 GGTATAATGT
50704662 CGATGCCATG-CCCTAGACATGGTCTTACACTGGCTCATCCATCAA-GT---
1 CGATGCCATGTCCC-AGACATGGTCTTACACTGGCTC-T-CAT-AATGTGGC
* * * * *
50704709 TGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCACATATTTGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTG-GC
** * * * *
50704759 CGATGCCATGTCCCAGACATACTCTTACACTGACACGTC-T--CGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGC
* * * *
50704805 TGATG-CATGTCCCAGACAT-GTCTTACATTGGCT-TACAT-CTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGC
* ** *
50704851 CAAT-ATATGTCCCAGACAT-GTCTTACACTAGCTCTTGTC-TCAA--T-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC---TCAT-AATGTGGC
* * *
50704897 CGATGCCATGTACCGGACATGGTCTTACACTGGCTCTCGTAATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
*
50704945 TGATG-CATGTCCCAGACAT-GTCTTACACTGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGG
50704976 TACACAAATA
Statistics
Matches: 202, Mismatches: 40, Indels: 51
0.69 0.14 0.17
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 12 0.06
45 21 0.10
46 56 0.28
47 54 0.27
48 24 0.12
49 1 0.00
50 30 0.15
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
Found at i:50710873 original size:44 final size:44
Alignment explanation
Indices: 50710805--50710918 Score: 133
Period size: 45 Copynumber: 2.5 Consensus size: 44
50710795 GTGCTGATGC
* * *
50710805 CATGTCCCATACTTGGTCTTACACTGAC-ACATCTC-GTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACTACATCTCAG--GCCAATG
* *
50710850 CATGTCCTAGACATGTCTTACACTGGCTTACATCTCAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGAC-TACATCTCAGGCCAATG
50710895 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
50710919 AGCTCTTGTC
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
44 12 0.20
45 40 0.67
46 7 0.12
47 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.29
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACTACATCTCAGGCCAATG
Found at i:50711008 original size:45 final size:44
Alignment explanation
Indices: 50710843--50711018 Score: 149
Period size: 45 Copynumber: 3.8 Consensus size: 44
50710833 ACATCTCGTA
* * *
50710843 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCA-G
1 GCCGATGCATGTCC-AGACATGTCTTACACTGGCTCACGTAT-ATG
* * ** *
50710888 GCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTTAAT-
1 GCCGATGCATGT-CCAGACATGTCTTACACTGGCTCACGT-AT-ATG
* * * *
50710934 GCCGATACCATGTTCCGGACATGGTCTTACACTGGCTCCCGTAATGTG
1 GCCGAT-GCATG-TCCAGACAT-GTCTTACACTGGCTCACGT-ATATG
50710982 GCCGATGCATGTCCAGACATGTCTTACACTGGCTCAC
1 GCCGATGCATGTCCAGACATGTCTTACACTGGCTCAC
50711019 AAATAACCCG
Statistics
Matches: 104, Mismatches: 20, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
45 47 0.45
46 17 0.16
47 16 0.15
48 24 0.23
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (44 bp):
GCCGATGCATGTCCAGACATGTCTTACACTGGCTCACGTATATG
Found at i:50718589 original size:42 final size:43
Alignment explanation
Indices: 50718529--50718624 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 43
50718519 TAGCTTAGTT
*
50718529 ATGGTCTTAC-TCGAAATCAAATAACAATGCCAATGTCCCAAAC
1 ATGGTCTTACAT-GTAATCAAATAACAATGCCAATGTCCCAAAC
* *** *
50718572 AT-GTCTTACATGTAATCACATATTGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCAAATAACAATGCCAATGTCCCAAAC
50718614 ATGGTCTTACA
1 ATGGTCTTACA
50718625 CATAATCACA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 34 0.76
43 11 0.24
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCAAATAACAATGCCAATGTCCCAAAC
Found at i:50722728 original size:28 final size:29
Alignment explanation
Indices: 50722688--50722800 Score: 149
Period size: 29 Copynumber: 4.0 Consensus size: 29
50722678 CATGACTGTA
50722688 AATGTGATTTGGGCCTAAT-GGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
*
50722716 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATG
* *
50722745 AATTTGATTTGGGCCTCATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* * * *
50722774 AAAGAGA-TTGGGCCTAGTGGGCTATAT
1 AATGTGATTTGGGCCTAATGGGCCATAT
50722801 ATAGGTATGT
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 36 0.49
29 38 0.51
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATG
Found at i:50722752 original size:29 final size:29
Alignment explanation
Indices: 50722686--50722801 Score: 148
Period size: 28 Copynumber: 4.1 Consensus size: 29
50722676 AGCATGACTG
50722686 TAAATGTGATTTGGGCCTAAT-GGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
*
50722714 TGAATGTGATTTGGGCCTAATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
* *
50722743 TAAATTTGATTTGGGCCTCATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
* * *
50722772 TGAAA-GAGA-TTGGGCCTAGTGGGCTATA
1 T-AAATGTGATTTGGGCCTAATGGGCCATA
50722800 TA
1 TA
50722802 TAGGTATGTG
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
27 1 0.01
28 37 0.48
29 36 0.47
30 3 0.04
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (29 bp):
TAAATGTGATTTGGGCCTAATGGGCCATA
Found at i:50722785 original size:57 final size:57
Alignment explanation
Indices: 50722686--50722801 Score: 162
Period size: 57 Copynumber: 2.0 Consensus size: 57
50722676 AGCATGACTG
* *
50722686 TAAATGTGATTTGGGCCTAATGGCCATATGAATGTGATTTGGGCCTAATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCATA
* * * *
50722743 TAAATTTGATTTGGGCCTCATGGGCCATATGAAAGAGA-TTGGGCCTAGTGGGCTATA
1 TAAATGTGATTTGGGCCTAAT-GGCCATATGAAAGAGATTTGGGCCTAATGGGCCATA
50722800 TA
1 TA
50722802 TAGGTATGTG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 38 0.73
58 14 0.27
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (57 bp):
TAAATGTGATTTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCATA
Found at i:50731484 original size:25 final size:23
Alignment explanation
Indices: 50731456--50731502 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
50731446 TCTCATTTCA
50731456 TATCATAATCTCCATACGTTTCCTT
1 TATCAT-ATCTCCATA-GTTTCCTT
* *
50731481 TATCATGTCTTCATAGTTTCCT
1 TATCATATCTCCATAGTTTCCT
50731503 CCATTTCCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 7 0.35
24 7 0.35
25 6 0.30
ACGTcount: A:0.21, C:0.26, G:0.06, T:0.47
Consensus pattern (23 bp):
TATCATATCTCCATAGTTTCCTT
Found at i:50732215 original size:19 final size:19
Alignment explanation
Indices: 50732191--50732229 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
50732181 ACATTACATG
* *
50732191 CACACATGATTCCACTAAT
1 CACACACGATTCCACCAAT
*
50732210 CACACACGGTTCCACCAAT
1 CACACACGATTCCACCAAT
50732229 C
1 C
50732230 CATTAATGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.33, C:0.38, G:0.08, T:0.21
Consensus pattern (19 bp):
CACACACGATTCCACCAAT
Found at i:50742039 original size:24 final size:24
Alignment explanation
Indices: 50741988--50742206 Score: 341
Period size: 24 Copynumber: 9.0 Consensus size: 24
50741978 ACTTTATCAT
*
50741988 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
50742013 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
50742037 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
50742061 ATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
50742085 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
50742110 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
50742135 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
50742160 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
50742184 ATAACTGGGGCATAAGCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTT
50742207 GCACTTCCTC
Statistics
Matches: 184, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
24 98 0.53
25 86 0.47
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:50742284 original size:20 final size:20
Alignment explanation
Indices: 50742259--50742322 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
50742249 TGAATACATA
50742259 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
*
50742279 ATGTGCATATCATACATGTC
1 ATGTGCATATCATACATATC
* *
50742299 ATGTGCATATCATGCATACC
1 ATGTGCATATCATACATATC
50742319 ATGT
1 ATGT
50742323 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.34
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:50742289 original size:11 final size:11
Alignment explanation
Indices: 50742259--50742312 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
50742249 TGAATACATA
50742259 ATGTGCATATC
1 ATGTGCATATC
*
50742270 A--TACATATC
1 ATGTGCATATC
50742279 ATGTGCATATC
1 ATGTGCATATC
* *
50742290 A--TACATGTC
1 ATGTGCATATC
50742299 ATGTGCATATC
1 ATGTGCATATC
50742310 ATG
1 ATG
50742313 CATACCATGT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (11 bp):
ATGTGCATATC
Found at i:50748513 original size:21 final size:20
Alignment explanation
Indices: 50748487--50748525 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
50748477 GATTATTTTT
50748487 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
50748508 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
50748526 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:50751972 original size:39 final size:39
Alignment explanation
Indices: 50751915--50751992 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
50751905 TGGGACTAAG
*
50751915 CCAATAACTTTAGGAACTTTTTGAACACTTA-AAATATTT
1 CCAATAACTTTAGAAACTTTTTGAACACTTAGAAA-ATTT
50751954 CCAATAACTTTAGAAACTTTTTGAACACTTAGAAAATTT
1 CCAATAACTTTAGAAACTTTTTGAACACTTAGAAAATTT
50751993 TCTCAAAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
39 34 0.92
40 3 0.08
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (39 bp):
CCAATAACTTTAGAAACTTTTTGAACACTTAGAAAATTT
Found at i:50751987 original size:19 final size:19
Alignment explanation
Indices: 50751924--50751993 Score: 54
Period size: 19 Copynumber: 3.6 Consensus size: 19
50751914 GCCAATAACT
*
50751924 TTAGGAACTTTTTGAACAC
1 TTAGAAACTTTTTGAACAC
** *
50751943 TTA-AAA-TATTTCCAATAAC
1 TTAGAAACT-TTTTGAA-CAC
50751962 TTTAGAAACTTTTTGAACAC
1 -TTAGAAACTTTTTGAACAC
*
50751982 TTAGAAAATTTT
1 TTAGAAACTTTT
50751994 CTCAAAAATA
Statistics
Matches: 38, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
17 1 0.03
18 7 0.18
19 16 0.42
20 5 0.13
21 8 0.21
22 1 0.03
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.40
Consensus pattern (19 bp):
TTAGAAACTTTTTGAACAC
Found at i:50752751 original size:32 final size:32
Alignment explanation
Indices: 50752714--50752779 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
50752704 ATGAGCCATC
50752714 ACTCATGGCTATATATACAAACCAAAACATAT
1 ACTCATGGCTATATATACAAACCAAAACATAT
50752746 ACTCATGGCTATATATACAAACCAAAACATAT
1 ACTCATGGCTATATATACAAACCAAAACATAT
50752778 AC
1 AC
50752780 ATTTACAAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.47, C:0.23, G:0.06, T:0.24
Consensus pattern (32 bp):
ACTCATGGCTATATATACAAACCAAAACATAT
Found at i:50759051 original size:15 final size:16
Alignment explanation
Indices: 50759020--50759073 Score: 58
Period size: 16 Copynumber: 3.3 Consensus size: 16
50759010 GGCCATAGAG
50759020 GAAAATAAGAAGAAGA
1 GAAAATAAGAAGAAGA
50759036 GAAAATAGATGAAG-AGA
1 GAAAATA-A-GAAGAAGA
*
50759053 GGAGAA-AAGAAGAAGA
1 -GAAAATAAGAAGAAGA
50759069 GAAAA
1 GAAAA
50759074 GAATTATAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
15 8 0.25
16 11 0.34
17 5 0.16
18 8 0.25
ACGTcount: A:0.65, C:0.00, G:0.30, T:0.06
Consensus pattern (16 bp):
GAAAATAAGAAGAAGA
Found at i:50759067 original size:18 final size:17
Alignment explanation
Indices: 50759016--50759070 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
50759006 ATTCGGCCAT
50759016 AGAGGAAAATAAGAAGAAG
1 AGAGG-AAA-AAGAAGAAG
* *
50759035 AGA--AAATAGATGAAG
1 AGAGGAAAAAGAAGAAG
50759050 AGAGGAGAAAAGAAGAAG
1 AGAGGA-AAAAGAAGAAG
50759068 AGA
1 AGA
50759071 AAAGAATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
15 10 0.34
16 3 0.10
17 1 0.03
18 12 0.41
19 3 0.10
ACGTcount: A:0.62, C:0.00, G:0.33, T:0.05
Consensus pattern (17 bp):
AGAGGAAAAAGAAGAAG
Found at i:50759696 original size:168 final size:168
Alignment explanation
Indices: 50759418--50759753 Score: 582
Period size: 168 Copynumber: 2.0 Consensus size: 168
50759408 CCTATGCCCT
*
50759418 TGCGCCTTCACCCGAGCTGTTGGCCACTGCACCACGCTTCTTCCTTTACTAATATATGGTCACAA
1 TGCGCCTTCACCCGAGCTGCTGGCCACTGCACCACGCTTCTTCCTTTACTAATATATGGTCACAA
* * * *
50759483 TTAATTTTAACCTTTAAGCCGCTTCAGTTCTGGCCCGTTTAAAAAATAAAATAGAATTTGCCTTC
66 TTAATTTTAACCTTTAACCCACTTCAGTTCTGGCCCGTTTAAAAAATAAAACAGAATTCGCCTTC
50759548 CCCTGGAATCGAACTCATAACCTCCCGACAGGCCTAGC
131 CCCTGGAATCGAACTCATAACCTCCCGACAGGCCTAGC
* *
50759586 TGCGCCTTCACCCGAGCTGCTGGCCACTGCACCACGCTTTTTCCTTTATTAATATATGGTCACAA
1 TGCGCCTTCACCCGAGCTGCTGGCCACTGCACCACGCTTCTTCCTTTACTAATATATGGTCACAA
* *
50759651 TTAATTTTAATCTTTAACCCACTTCAGTTCTGGTCCGTTTAAAAAATAAAACAGAATTCGCCTTC
66 TTAATTTTAACCTTTAACCCACTTCAGTTCTGGCCCGTTTAAAAAATAAAACAGAATTCGCCTTC
*
50759716 CCCTGGAATCGAACTCATAACCTCCCGGCAGGCCTAGC
131 CCCTGGAATCGAACTCATAACCTCCCGACAGGCCTAGC
50759754 ACGCTGTTGC
Statistics
Matches: 158, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
168 158 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (168 bp):
TGCGCCTTCACCCGAGCTGCTGGCCACTGCACCACGCTTCTTCCTTTACTAATATATGGTCACAA
TTAATTTTAACCTTTAACCCACTTCAGTTCTGGCCCGTTTAAAAAATAAAACAGAATTCGCCTTC
CCCTGGAATCGAACTCATAACCTCCCGACAGGCCTAGC
Found at i:50760269 original size:16 final size:16
Alignment explanation
Indices: 50760248--50760281 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
50760238 TAAACCTACG
*
50760248 AAATAATAATAATAAT
1 AAATAATAATAACAAT
50760264 AAATAATAATAACAAT
1 AAATAATAATAACAAT
50760280 AA
1 AA
50760282 CATCCAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATAATAATAACAAT
Found at i:50761939 original size:21 final size:22
Alignment explanation
Indices: 50761915--50761956 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
50761905 CTCTTGAAAC
*
50761915 AGGGA-AGCACGCCCGTGTGGA
1 AGGGACAGCACACCCGTGTGGA
*
50761936 AGGGACGGCACACCCGTGTGG
1 AGGGACAGCACACCCGTGTGG
50761957 CCTTCTTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.21, C:0.26, G:0.43, T:0.10
Consensus pattern (22 bp):
AGGGACAGCACACCCGTGTGGA
Found at i:50762641 original size:17 final size:16
Alignment explanation
Indices: 50762605--50762642 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
50762595 ATAATGCCCT
50762605 AAAAATTTCAAAACCC
1 AAAAATTTCAAAACCC
*
50762621 AAAAATTTCGAAACCC
1 AAAAATTTCAAAACCC
50762637 AAAAAT
1 AAAAAT
50762643 CCTGAAATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.58, C:0.21, G:0.03, T:0.18
Consensus pattern (16 bp):
AAAAATTTCAAAACCC
Found at i:50764183 original size:28 final size:29
Alignment explanation
Indices: 50764143--50764253 Score: 140
Period size: 28 Copynumber: 4.0 Consensus size: 29
50764133 CATGACTGTA
*
50764143 AATGTGATTTGGGCTTAAT-GGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* *
50764171 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGATTTGGGCCTAATGGGCCATATG
50764200 AATGTGA--TGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* * *
50764227 AAAGAGA-TTGGGCCTAGTGGGCCATAT
1 AATGTGATTTGGGCCTAATGGGCCATAT
50764254 ACAGGTATGT
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
27 23 0.32
28 36 0.49
29 14 0.19
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATG
Found at i:50764238 original size:55 final size:56
Alignment explanation
Indices: 50764141--50764250 Score: 152
Period size: 55 Copynumber: 2.0 Consensus size: 56
50764131 AGCATGACTG
* * *
50764141 TAAATGTGATTTGGGCTTAATGGCCATATGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGA-TTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA
*
50764198 TAAATGTGA-TGGGCCTAATGGGCCATATGAAAGAGA-TTGGGCCTAGTGGGCCA
1 TAAATGTGATTGGGCCTAAT-GGCCATATGAAAGAGATTTGGGCCTAATGGGCCA
50764251 TATACAGGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
55 25 0.52
56 14 0.29
57 9 0.19
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (56 bp):
TAAATGTGATTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA
Found at i:50773052 original size:28 final size:28
Alignment explanation
Indices: 50772991--50773088 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
50772981 TCACAAATTG
** * *
50772991 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
50773020 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
50773048 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
50773076 GCACTAAGTGTGC
1 GCACTAAGTGTGC
50773089 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:50780732 original size:28 final size:28
Alignment explanation
Indices: 50780671--50780768 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
50780661 TCACAAATTG
** * *
50780671 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
50780700 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
50780728 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
50780756 GCACTAAGTGTGC
1 GCACTAAGTGTGC
50780769 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:50791187 original size:14 final size:14
Alignment explanation
Indices: 50791168--50791205 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
50791158 CGAAATTAAA
50791168 AATTGTAAAATAAT
1 AATTGTAAAATAAT
50791182 AATTGTAAAATAAT
1 AATTGTAAAATAAT
50791196 AATTGTAAAA
1 AATTGTAAAA
50791206 CCTACTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.34
Consensus pattern (14 bp):
AATTGTAAAATAAT
Found at i:50800130 original size:49 final size:49
Alignment explanation
Indices: 50800064--50800301 Score: 287
Period size: 49 Copynumber: 4.8 Consensus size: 49
50800054 TAGCCAAAGC
* * * * *
50800064 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
50800113 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
50800162 TATCCGATACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
50800212 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * * *
50800263 TTTCGGGTACGCATAGTAGCCTACACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
50800302 TGCGACCTCA
Statistics
Matches: 164, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 87 0.53
50 42 0.26
51 34 0.21
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:50800237 original size:99 final size:100
Alignment explanation
Indices: 50800075--50800308 Score: 301
Period size: 99 Copynumber: 2.4 Consensus size: 100
50800065 ATCTGGTACG
* * ** *
50800075 CATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCTGATACACGTAGTAGCCTGCACT
*
50800140 TAGTACTACACACGTGA-C-CAATTATCCGATACA
66 TAGTACTACACACATGATCACAATTATCCGATACA
* * *
50800173 CGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCTGATACACGTAGTAGCCTGCAC
* * * * *
50800238 TTAGTACTACACACATGATCACAGTTTTCGGGTACG
65 TTAGTACTACACACATGATCACAATTATCCGATACA
* *
50800274 CATAGTAGCCTACACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC
50800309 TCACAATAGA
Statistics
Matches: 114, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
98 30 0.26
99 43 0.38
100 1 0.01
101 40 0.35
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (100 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCTGATACACGTAGTAGCCTGCACT
TAGTACTACACACATGATCACAATTATCCGATACA
Found at i:50804581 original size:93 final size:93
Alignment explanation
Indices: 50804474--50804644 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
50804464 CGCCCTAAGT
* *
50804474 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50804539 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
50804567 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50804632 CGAGTTCGGATGC
66 CGAGTTCGGATGC
50804645 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:50804641 original size:46 final size:46
Alignment explanation
Indices: 50804469--50804641 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
50804459 TAACCCGCCC
* * *
50804469 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
50804515 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
50804563 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50804608 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50804642 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50805081 original size:30 final size:30
Alignment explanation
Indices: 50805047--50805106 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
50805037 ATTTAATACG
50805047 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
50805077 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
50805107 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:50812104 original size:92 final size:92
Alignment explanation
Indices: 50811993--50812162 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
50811983 CGCCCTAAGT
* *
50811993 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50812058 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
50812085 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50812150 CGAGTTCGGATGC
66 CGAGTTCGGATGC
50812163 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:50812159 original size:46 final size:46
Alignment explanation
Indices: 50811988--50812159 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
50811978 TAACCCGCCC
* * *
50811988 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
50812034 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
50812080 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50812126 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50812160 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50812178 original size:46 final size:46
Alignment explanation
Indices: 50811990--50812178 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
50811980 ACCCGCCCTA
* ** * *
50811990 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
50812035 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
50812083 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
50812128 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
50812174 AGTGA
1 AGTGA
50812179 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:50812605 original size:30 final size:30
Alignment explanation
Indices: 50812571--50812630 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
50812561 ATTTAATACG
50812571 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
50812601 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
50812631 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:50815029 original size:64 final size:64
Alignment explanation
Indices: 50814875--50815130 Score: 193
Period size: 67 Copynumber: 3.9 Consensus size: 64
50814865 TGGATGATAC
* ** * * * *
50814875 AGATAGTATGTAGCTAGGTCACATGTATGGTGCT-GGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGCTAC
50814938 AAG
64 --G
* *
50814941 ACATTATTATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC
1 AGA-TA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC
50815006 G
64 G
* ** * * * *
50815007 GGATATATGTAGCTAGGTCGCATGCATGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTA
50815072 CG
63 CG
* * *
50815074 AGATAAATG--GCTAGGTCACAT-GGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
50815131 CGAACTATAT
Statistics
Matches: 153, Mismatches: 29, Indels: 21
0.75 0.14 0.10
Matches are distributed among these distances:
60 1 0.01
61 19 0.12
62 1 0.01
64 29 0.19
65 14 0.09
66 6 0.04
67 58 0.38
68 24 0.16
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:50824531 original size:23 final size:23
Alignment explanation
Indices: 50824504--50824550 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
50824494 TTTCTCAAAG
50824504 TAAGTTTAAGCTACTGTGTTTCT
1 TAAGTTTAAGCTACTGTGTTTCT
50824527 TAAGTTTAAGCTACTGTGTTTCT
1 TAAGTTTAAGCTACTGTGTTTCT
50824550 T
1 T
50824551 TCCTTTTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.13, G:0.17, T:0.49
Consensus pattern (23 bp):
TAAGTTTAAGCTACTGTGTTTCT
Found at i:50825250 original size:71 final size:71
Alignment explanation
Indices: 50825134--50825275 Score: 275
Period size: 71 Copynumber: 2.0 Consensus size: 71
50825124 TTTAAAAAGA
50825134 AATTCATTATACTGGGCCATTCCAACCAAGTGTTACCGTACTCTAACTCGTTCGTTTGTGGGGAG
1 AATTCATTATACTGGGCCATTCCAACCAAGTGTTACCGTACTCTAACTCGTTCGTTTGTGGGGAG
50825199 CCTAAT
66 CCTAAT
*
50825205 AATTCATTATACTGGGCCATTCCAACCAAGTGTTACTGTACTCTAACTCGTTCGTTTGTGGGGAG
1 AATTCATTATACTGGGCCATTCCAACCAAGTGTTACCGTACTCTAACTCGTTCGTTTGTGGGGAG
50825270 CCTAAT
66 CCTAAT
50825276 CCGAAATCAT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (71 bp):
AATTCATTATACTGGGCCATTCCAACCAAGTGTTACCGTACTCTAACTCGTTCGTTTGTGGGGAG
CCTAAT
Found at i:50825318 original size:47 final size:47
Alignment explanation
Indices: 50825245--50825340 Score: 165
Period size: 47 Copynumber: 2.0 Consensus size: 47
50825235 TGTTACTGTA
50825245 CTCTAACTCGTTCGTTTGTGGGGAGCCTAATCCGAAATCATTTCCAT
1 CTCTAACTCGTTCGTTTGTGGGGAGCCTAATCCGAAATCATTTCCAT
* * *
50825292 CTCTAACTCTTTCGTTTGTGGTGAGCCTAGTCCGAAATCATTTCCAT
1 CTCTAACTCGTTCGTTTGTGGGGAGCCTAATCCGAAATCATTTCCAT
50825339 CT
1 CT
50825341 ATCAGCATTG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (47 bp):
CTCTAACTCGTTCGTTTGTGGGGAGCCTAATCCGAAATCATTTCCAT
Found at i:50828247 original size:9 final size:9
Alignment explanation
Indices: 50828229--50828269 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
50828219 TTATACCAAA
50828229 AATAAAAAT
1 AATAAAAAT
*
50828238 AATAACAAT
1 AATAAAAAT
50828247 AATAATAAA-
1 AATAA-AAAT
50828256 AATAAAAAT
1 AATAAAAAT
50828265 AATAA
1 AATAA
50828270 TTAATTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 3 0.11
9 23 0.82
10 2 0.07
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (9 bp):
AATAAAAAT
Found at i:50828963 original size:19 final size:20
Alignment explanation
Indices: 50828920--50828963 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
50828910 GGTCTTCAGG
* *
50828920 TATATTTTATTATGATTTAT
1 TATATTATATCATGATTTAT
50828940 T-TATTATATCATG-TTTAT
1 TATATTATATCATGATTTAT
50828958 TATATT
1 TATATT
50828964 TGGAGACCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 6 0.29
19 14 0.67
20 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (20 bp):
TATATTATATCATGATTTAT
Found at i:50835574 original size:18 final size:19
Alignment explanation
Indices: 50835548--50835585 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
50835538 TTTATATATA
*
50835548 TATTATAGATTTAATATTT
1 TATTATAGAATTAATATTT
*
50835567 TATT-TAGAATTAGTATTT
1 TATTATAGAATTAATATTT
50835585 T
1 T
50835586 TATAATGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (19 bp):
TATTATAGAATTAATATTT
Found at i:50838390 original size:29 final size:29
Alignment explanation
Indices: 50838357--50838430 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
50838347 GTGACGAGAT
50838357 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
50838386 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
50838415 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50838431 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:50838446 original size:29 final size:29
Alignment explanation
Indices: 50838414--50838489 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
50838404 CTGGAAATAT
* *
50838414 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
50838443 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
50838472 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
50838490 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:50838457 original size:58 final size:58
Alignment explanation
Indices: 50838357--50838489 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
50838347 GTGACGAGAT
* * * * * *
50838357 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
50838415 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
50838473 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
50838490 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:50840612 original size:25 final size:25
Alignment explanation
Indices: 50840584--50840631 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
50840574 AATATCAACA
*
50840584 TTAAAATA-TATTTTAATAATAAAAG
1 TTAAAACATTATTTTAA-AATAAAAG
*
50840609 TTAAAACATTTTTTTAAAATAAA
1 TTAAAACATTATTTTAAAATAAA
50840632 TCAATTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (25 bp):
TTAAAACATTATTTTAAAATAAAAG
Found at i:50842448 original size:17 final size:18
Alignment explanation
Indices: 50842421--50842461 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
50842411 AGGCCAATCT
*
50842421 AGGCGTATGGG-CCACAC
1 AGGCATATGGGCCCACAC
*
50842438 GGGCATATGGGCCCACAC
1 AGGCATATGGGCCCACAC
50842456 AGGCAT
1 AGGCAT
50842462 GGGGGCCCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.24, C:0.29, G:0.34, T:0.12
Consensus pattern (18 bp):
AGGCATATGGGCCCACAC
Found at i:50842467 original size:18 final size:18
Alignment explanation
Indices: 50842432--50842470 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
50842422 GGCGTATGGG
* *
50842432 CCACACGGGCATATGGGC
1 CCACACAGGCATAGGGGC
*
50842450 CCACACAGGCATGGGGGC
1 CCACACAGGCATAGGGGC
50842468 CCA
1 CCA
50842471 TAATTCTGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.23, C:0.36, G:0.33, T:0.08
Consensus pattern (18 bp):
CCACACAGGCATAGGGGC
Found at i:50854236 original size:37 final size:37
Alignment explanation
Indices: 50854195--50854269 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
50854185 TGTTAATTTC
* *
50854195 AAGACTTATGTAATGTTTTTAATTATGTAGTGGTTCA
1 AAGACTTATGTAATGTTTCTAATTATGTAGTGATTCA
*
50854232 AAGACTTATGTAATGTTTCTAATTATTTAGTGATTCA
1 AAGACTTATGTAATGTTTCTAATTATGTAGTGATTCA
50854269 A
1 A
50854270 TATCTAATCG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.45
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTCTAATTATGTAGTGATTCA
Found at i:50859865 original size:40 final size:40
Alignment explanation
Indices: 50859791--50859967 Score: 277
Period size: 40 Copynumber: 4.5 Consensus size: 40
50859781 ACCCAAGTAT
* *
50859791 CTTCGGGAT-TTAG-CCGAATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
50859830 CTTCGGGTCCTAGCCCGGATACAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
50859870 CTTCGGGTCTTAGCCCGGATATAGCAATTCACACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
50859910 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
50859950 CTTCGGGTCTTAGCCCGG
1 CTTCGGGTCTTAGCCCGG
50859968 TTATCATCCG
Statistics
Matches: 126, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 10 0.08
40 115 0.91
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:50864360 original size:187 final size:186
Alignment explanation
Indices: 50864037--50864384 Score: 509
Period size: 187 Copynumber: 1.9 Consensus size: 186
50864027 GGCGTGTGAT
* * * *
50864037 CCACACGGCCTAGACACACGACCGTGTCAAAGGCCGTGCGAAAATTGGAGCTAAATTTTCAAATT
1 CCACACGACCTAGACACACGACCATGTCAAAGGCCGTGCAAAAATTAGAGCTAAATTTTCAAATT
* * ** *
50864102 TTAAATAAGTCAGAGAGCTCTACGGGCAAGGCACACGGTCGTGTGTTCAGACACGTGGGCATGTG
66 TTAAATAAGTCAGAGAGCTCCACGGGCAAGGCACACGGCCGTGTGTTCAGACACACGGGCATGTA
* *
50864167 GGAGACCACAC-AGGCTTGGGAGAAGCGAACACGACCGTGCGATATGGCCTTGTAAC
131 GGAGACCACACGA-ACATGGGAGAAGCGAACACGACCGTGCGATATGGCCTTGTAAC
* ** *
50864223 CCACACGACCTAGACATACGGGCATGTCAAATGGCCGTGTAAAAATTAGAGCTAAATTTTCAAAT
1 CCACACGACCTAGACACACGACCATGTCAAA-GGCCGTGCAAAAATTAGAGCTAAATTTTCAAAT
* * *
50864288 TTTAAATAAGTTAGAGAGCTCCACGGGCAAGGCACATGGCCGTGTGTTCAGACACACGGGCGTGT
65 TTTAAATAAGTCAGAGAGCTCCACGGGCAAGGCACACGGCCGTGTGTTCAGACACACGGGCATGT
50864353 AGGAGACCACACGAACATGGGAGAAGCGAACA
130 AGGAGACCACACGAACATGGGAGAAGCGAACA
50864385 ACGTAGGACA
Statistics
Matches: 142, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
186 26 0.18
187 115 0.81
188 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.19
Consensus pattern (186 bp):
CCACACGACCTAGACACACGACCATGTCAAAGGCCGTGCAAAAATTAGAGCTAAATTTTCAAATT
TTAAATAAGTCAGAGAGCTCCACGGGCAAGGCACACGGCCGTGTGTTCAGACACACGGGCATGTA
GGAGACCACACGAACATGGGAGAAGCGAACACGACCGTGCGATATGGCCTTGTAAC
Found at i:50865046 original size:3 final size:3
Alignment explanation
Indices: 50865038--50865097 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
50865028 GATATATTGT
50865038 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
50865086 TTA TTA TTA TTA
1 TTA TTA TTA TTA
50865098 CTACTACTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:50866642 original size:6 final size:6
Alignment explanation
Indices: 50866628--50866680 Score: 70
Period size: 6 Copynumber: 8.7 Consensus size: 6
50866618 TTGAGTCCGA
* * *
50866628 TTATTT TTATGT TTATGT TTATCT TTATTT TTATCTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTAT-TT TTATTT TTATTT
50866677 TTAT
1 TTAT
50866681 GTCTATTTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
6 37 0.86
7 6 0.14
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (6 bp):
TTATTT
Found at i:50866687 original size:18 final size:18
Alignment explanation
Indices: 50866628--50866689 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
50866618 TTGAGTCCGA
*
50866628 TTATTTTTATGTTTATGT
1 TTATTTTTATTTTTATGT
* *
50866646 TTATCTTTATTTTTATCTT
1 TTATTTTTATTTTTAT-GT
50866665 TTATTTTTATTTTTATGT
1 TTATTTTTATTTTTATGT
*
50866683 CTATTTT
1 TTATTTT
50866690 GTTTTCGAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
18 21 0.57
19 16 0.43
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (18 bp):
TTATTTTTATTTTTATGT
Found at i:50875999 original size:46 final size:46
Alignment explanation
Indices: 50875949--50876170 Score: 315
Period size: 46 Copynumber: 4.8 Consensus size: 46
50875939 TGGTTGGGCA
50875949 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
50875995 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
50876042 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*
50876088 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
50876134 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50876171 GCGGGTTACA
Statistics
Matches: 157, Mismatches: 12, Indels: 14
0.86 0.07 0.08
Matches are distributed among these distances:
43 4 0.03
45 2 0.01
46 112 0.71
47 33 0.21
48 2 0.01
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:50876104 original size:93 final size:93
Alignment explanation
Indices: 50875945--50876116 Score: 344
Period size: 93 Copynumber: 1.8 Consensus size: 93
50875935 AGGATGGTTG
50875945 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
50876010 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
50876038 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
50876103 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
50876117 ACTTATGGAT
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 79 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:50880736 original size:16 final size:16
Alignment explanation
Indices: 50880715--50880746 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50880705 AACCTTACCA
50880715 CGAGTTTATCACTTAT
1 CGAGTTTATCACTTAT
*
50880731 CGAGTTTATTACTTAT
1 CGAGTTTATCACTTAT
50880747 GAATTTTACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (16 bp):
CGAGTTTATCACTTAT
Found at i:50882217 original size:46 final size:45
Alignment explanation
Indices: 50882150--50882319 Score: 209
Period size: 46 Copynumber: 3.7 Consensus size: 45
50882140 AACCCGCCCC
*
50882150 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCATCCA
* * * *
50882196 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGCATCCA
* * *
50882242 TTTA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCATCCA
50882288 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
50882320 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
44 1 0.01
45 4 0.04
46 93 0.89
47 4 0.04
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGCATCCA
Found at i:50882266 original size:92 final size:91
Alignment explanation
Indices: 50882155--50882323 Score: 302
Period size: 92 Copynumber: 1.8 Consensus size: 91
50882145 GCCCCTAAGT
* *
50882155 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50882220 CGAGTTCGGATGCCTAGTTACATTTAC
66 CGAGTTC-GATGCCTAGTTACATTTAC
*
50882247 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50882312 CGAGTTCGATGC
66 CGAGTTCGATGC
50882324 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
91 5 0.07
92 69 0.93
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGATGCCTAGTTACATTTAC
Found at i:50887797 original size:93 final size:93
Alignment explanation
Indices: 50887690--50887860 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
50887680 GCCCCTAAGT
* *
50887690 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50887755 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
50887783 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50887848 CGAGTTCGGATGC
66 CGAGTTCGGATGC
50887861 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:50887857 original size:46 final size:46
Alignment explanation
Indices: 50887685--50887857 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
50887675 AACCCGCCCC
* * *
50887685 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
50887731 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
50887779 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50887824 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50887858 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50899449 original size:13 final size:13
Alignment explanation
Indices: 50899431--50899462 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
50899421 CATATACCAA
50899431 ATTCATTCATATG
1 ATTCATTCATATG
50899444 ATTCATTCATATG
1 ATTCATTCATATG
*
50899457 AATCAT
1 ATTCAT
50899463 AACATAACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.44
Consensus pattern (13 bp):
ATTCATTCATATG
Found at i:50899790 original size:43 final size:43
Alignment explanation
Indices: 50899743--50899846 Score: 113
Period size: 42 Copynumber: 2.4 Consensus size: 43
50899733 ATACGTGGTT
* *
50899743 TTACATGTAATCAAATATTGATG-CCACTGTCCCAAACAGGATC
1 TTACACGTAATCAAATATAGATGTCCA-TGTCCCAAACAGGATC
* * * *
50899786 TTACACGAAATCAAATA-AGATGTCGATGTCCCAGACAGGGTC
1 TTACACGTAATCAAATATAGATGTCCATGTCCCAAACAGGATC
*
50899828 TTACACGTAAATCACATAT
1 TTACACGT-AATCAAATAT
50899847 CAGAAATCCT
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
42 25 0.50
43 25 0.50
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (43 bp):
TTACACGTAATCAAATATAGATGTCCATGTCCCAAACAGGATC
Found at i:50901504 original size:39 final size:39
Alignment explanation
Indices: 50901420--50901572 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
50901410 TATGGTAACC
** * *
50901420 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
50901460 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
50901499 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
50901538 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
50901573 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:50901545 original size:78 final size:79
Alignment explanation
Indices: 50901389--50901571 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
50901379 TCGTTCAAAC
* * **
50901389 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
50901454 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
50901469 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
50901533 CAATTTGCACAATT
66 CAATTTGCACAATT
50901547 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
50901572 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:50911296 original size:43 final size:43
Alignment explanation
Indices: 50911230--50911312 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
50911220 AGCTCGTACA
* *
50911230 ATGCCAATGTCCCAAACAGGGTCTTACACGTAATTAAATATTG
1 ATGCCAATGTCCCAAACAAGGTCTTACACGAAATTAAATATTG
* * *
50911273 ATGCCACTGTCCCAGACAAGGTCTTACATGAAATTAAATA
1 ATGCCAATGTCCCAAACAAGGTCTTACACGAAATTAAATA
50911313 CGATGTTGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAAACAAGGTCTTACACGAAATTAAATATTG
Found at i:50919032 original size:40 final size:40
Alignment explanation
Indices: 50918905--50919034 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
50918895 ATGCTGGAAA
* *
50918905 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
50918945 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
50918985 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
50919025 TTATATCCGG
1 TTATATCCGG
50919035 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:50927024 original size:40 final size:40
Alignment explanation
Indices: 50926897--50927026 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
50926887 ATGCTGGAAA
* *
50926897 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
50926937 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
50926977 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
50927017 TTATATCCGG
1 TTATATCCGG
50927027 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:50928495 original size:48 final size:48
Alignment explanation
Indices: 50928411--50928503 Score: 109
Period size: 48 Copynumber: 1.9 Consensus size: 48
50928401 ACATCAGTGC
* * * *
50928411 TGATGCCATGTCCCAGGCGTGGTCTTATACTAGCACACA-TATCATCGT
1 TGATGCCATGTACCAGACATGGTCTTACACTAGCACA-ATTATCATCGT
*
50928459 TGATGCCATGTACTAGACATGGTCTTACAC-AGGCACAATTATCAT
1 TGATGCCATGTACCAGACATGGTCTTACACTA-GCACAATTATCAT
50928504 TAATCACAGT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
47 2 0.05
48 36 0.95
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (48 bp):
TGATGCCATGTACCAGACATGGTCTTACACTAGCACAATTATCATCGT
Found at i:50933107 original size:27 final size:28
Alignment explanation
Indices: 50933030--50933098 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
50933020 GCGTAGATCA
*
50933030 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
50933058 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
50933086 CGATA-TACCCCTA
1 CGAAATTACCCCTA
50933099 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGTAAAATTAC
Found at i:50937984 original size:48 final size:48
Alignment explanation
Indices: 50937899--50937992 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
50937889 CATGTCAGTG
* *
50937899 CCGATGCCATGTCCCAGACATGGTCTTATACTAGCACACA-TATCATCA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACA-ATTATCATCA
**
50937947 CCGATGCCATGTCTTAAACATGGTCTTACA-TAGGCACAATTATCAT
1 CCGATGCCATGTCCCAAACATGGTCTTACACTA-GCACAATTATCAT
50937993 TAAACACAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 3 0.08
48 37 0.93
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACAATTATCATCA
Found at i:50940994 original size:27 final size:27
Alignment explanation
Indices: 50940964--50941103 Score: 167
Period size: 27 Copynumber: 5.2 Consensus size: 27
50940954 CGATTTACAA
*
50940964 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
50940991 AATTA-CTAAAATACCCCTGTAGGGTAG
1 AATTATC-GAAATACCCCTGTAGGGTAG
* *
50941018 AATTATCGAAATACCCTTGTTGGGTAGG
1 AATTATCGAAATACCCCTGTAGGGTA-G
* *
50941046 AA-TACCAAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
50941072 AATTATCGAGATACCCTTGTAGGGTAA
1 AATTATCGAAATACCCCTGTAGGGTAG
50941099 AATTA
1 AATTA
50941104 CCATTTTGCC
Statistics
Matches: 95, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 3 0.03
27 88 0.93
28 4 0.04
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (27 bp):
AATTATCGAAATACCCCTGTAGGGTAG
Found at i:50941022 original size:54 final size:54
Alignment explanation
Indices: 50940964--50941106 Score: 216
Period size: 54 Copynumber: 2.6 Consensus size: 54
50940954 CGATTTACAA
* * *
50940964 AATTATTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
*
50941018 AATTATCGAAATACCCTTGTTGGGTAGGAA-TACCAAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTA-GAATTACCAAAATACCCCTGTAGGGTAG
* *
50941072 AATTATCGAGATACCCTTGTAGGGTAAAATTACCA
1 AATTATCGAAATACCCTTGTAGGGTAGAATTACCA
50941107 TTTTGCCCCT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 2 0.03
54 75 0.94
55 3 0.04
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTATCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
Found at i:50941679 original size:21 final size:22
Alignment explanation
Indices: 50941619--50941680 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
50941609 GCCAATTATT
*
50941619 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
50941641 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
50941663 CTGATTATGGC-TTGTGCC
1 CTGATTATGGCTTTGTGCC
50941681 GTTATTGTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 8 0.23
22 26 0.74
23 1 0.03
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:50941723 original size:20 final size:19
Alignment explanation
Indices: 50941671--50941723 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
50941661 ACCTGATTAT
*
50941671 GGCTTGTGCCGTTATTGTG
1 GGCTTGTGCCGATATTGTG
**
50941690 GGCTTTGTATCGATATTGTG
1 GGC-TTGTGCCGATATTGTG
50941710 GGCTTCGTGCCGAT
1 GGCTT-GTGCCGAT
50941724 TATAGACCCG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
19 5 0.19
20 22 0.81
ACGTcount: A:0.09, C:0.17, G:0.34, T:0.40
Consensus pattern (19 bp):
GGCTTGTGCCGATATTGTG
Found at i:50941952 original size:6 final size:6
Alignment explanation
Indices: 50941935--50942053 Score: 66
Period size: 6 Copynumber: 19.3 Consensus size: 6
50941925 TTGCATTCAC
* * * * *
50941935 ATTCTA ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATCCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
50941985 ATTCTG ATTCTA ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
50942034 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
50942054 AATGTTTCTT
Statistics
Matches: 87, Mismatches: 15, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
5 5 0.06
6 69 0.79
7 10 0.11
8 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:50941992 original size:31 final size:31
Alignment explanation
Indices: 50941957--50942032 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
50941947 ATTCTGTTAC
*
50941957 CTGATACTGATTCTGATCCTGTCACCTAATT
1 CTGATTCTGATTCTGATCCTGTCACCTAATT
* * *
50941988 CTGATTCTAATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATCCTGTCACCTAATT
50942019 CTGATTCTGATTCT
1 CTGATTCTGATTCT
50942033 CATTTTGATT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (31 bp):
CTGATTCTGATTCTGATCCTGTCACCTAATT
Found at i:50942028 original size:25 final size:25
Alignment explanation
Indices: 50941935--50942032 Score: 97
Period size: 25 Copynumber: 3.7 Consensus size: 25
50941925 TTGCATTCAC
*
50941935 ATTCTAATTCTGATTCTGTTACCTG
1 ATTCTAATTCTGATTCTGTCACCTG
* * *
50941960 ATACTGATTCTGATCCTGTCACCTAATTCTG
1 ATTCTAATTCTGATTCTGTCA-C-----CTG
50941991 ATTCTAATTCTGATTCTGTCACCTG
1 ATTCTAATTCTGATTCTGTCACCTG
*
50942016 ATTCTGATTCTGATTCT
1 ATTCTAATTCTGATTCT
50942033 CATTTTGATT
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
25 36 0.61
26 1 0.02
30 1 0.02
31 21 0.36
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.45
Consensus pattern (25 bp):
ATTCTAATTCTGATTCTGTCACCTG
Found at i:50948004 original size:41 final size:41
Alignment explanation
Indices: 50947959--50948076 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
50947949 TGAAAGATAA
50947959 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
50948000 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50948030 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50948071 ATGTAG
1 ATGTAG
50948077 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:50948015 original size:71 final size:71
Alignment explanation
Indices: 50947927--50948090 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50947917 GAGATGTATC
50947927 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50947992 AGGACA
66 AGGACA
50947998 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50948063 AGGACA
66 AGGACA
50948069 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
50948091 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:50955579 original size:41 final size:41
Alignment explanation
Indices: 50955534--50955651 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
50955524 TGAAAGATAA
50955534 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
50955575 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50955605 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50955646 ATGTAG
1 ATGTAG
50955652 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:50955590 original size:71 final size:71
Alignment explanation
Indices: 50955502--50955665 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50955492 GAGATGTATC
50955502 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50955567 AGGACA
66 AGGACA
50955573 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50955638 AGGACA
66 AGGACA
50955644 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
50955666 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:50957428 original size:19 final size:19
Alignment explanation
Indices: 50957406--50957453 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
50957396 ATCTGTCAGA
*
50957406 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
* *
50957425 AGAAAAGAAAATTAAAAATT
1 AGAAAA-TAAATGAAAAATT
50957445 A-AAAATAAA
1 AGAAAATAAA
50957454 AATAAAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 3 0.12
19 10 0.42
20 11 0.46
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:50957444 original size:7 final size:7
Alignment explanation
Indices: 50957432--50957463 Score: 50
Period size: 6 Copynumber: 4.9 Consensus size: 7
50957422 ATTAGAAAAG
50957432 AAAATTA
1 AAAATTA
50957439 AAAATTA
1 AAAATTA
50957446 AAAA-TA
1 AAAATTA
50957452 AAAA-TA
1 AAAATTA
50957458 AAAATT
1 AAAATT
50957464 TGAATTGCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 12 0.50
7 12 0.50
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (7 bp):
AAAATTA
Found at i:50957454 original size:19 final size:20
Alignment explanation
Indices: 50957406--50957463 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 20
50957396 ATCTGTCAGA
* *
50957406 AGAAAAT-AAATGAAGAATT
1 AGAAAATAAAATTAAAAATT
*
50957425 AGAAAAGAAAATTAAAAATT
1 AGAAAATAAAATTAAAAATT
*
50957445 A-AAAATAAAAATAAAAATT
1 AGAAAATAAAATTAAAAATT
50957464 TGAATTGCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
19 22 0.67
20 11 0.33
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (20 bp):
AGAAAATAAAATTAAAAATT
Found at i:50959467 original size:43 final size:42
Alignment explanation
Indices: 50959420--50959514 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 42
50959410 TCCCAGACGT
* * **
50959420 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGAAAG
1 GGTCTTACACGAAATCAAATAT-GATGCCACCATCCCAGAAAG
*
50959463 GGTCTTACACGAAATCAAATATGATGCCACCATCCCAG-ATG
1 GGTCTTACACGAAATCAAATATGATGCCACCATCCCAGAAAG
50959504 TGGTCTTACAC
1 -GGTCTTACAC
50959515 ATAAACCATA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
41 2 0.04
42 24 0.52
43 20 0.43
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATATGATGCCACCATCCCAGAAAG
Found at i:50959509 original size:42 final size:43
Alignment explanation
Indices: 50959401--50959557 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 43
50959391 AGCTCTTACA
* * * *
50959401 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCACCGTCCCAGAAGTGGTCTTACACGAAATCAAATATCG
*
50959444 ATGCCACTGTCCCAGAAAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCACCGTCCCAG-AAGTGGTCTTACACGAAATCAAATATCG
* * * * *
50959486 ATGCCACCATCCCAGATGTGGTCTTACACATAAACCATAA-GTCG
1 ATGCCACCGTCCCAGAAGTGGTCTTACAC-GAAATCA-AATATCG
* *
50959530 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCACCGTCCCAGAAGTGGTCTTACA
50959558 TGATAACAAG
Statistics
Matches: 95, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
41 2 0.02
42 24 0.25
43 39 0.41
44 30 0.32
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCACCGTCCCAGAAGTGGTCTTACACGAAATCAAATATCG
Found at i:50963611 original size:37 final size:37
Alignment explanation
Indices: 50963570--50963640 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
50963560 CTCTATATAA
*
50963570 TTTAGAGTTTACACACCCCCAAACTTAATTCATTACT
1 TTTAGAGTTTACACACCCCCAAACTTAATCCATTACT
*
50963607 TTTAGAGTTTACACACCCCTAAACTTAATCCATT
1 TTTAGAGTTTACACACCCCCAAACTTAATCCATT
50963641 GCTTGTCTCG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (37 bp):
TTTAGAGTTTACACACCCCCAAACTTAATCCATTACT
Found at i:50966427 original size:93 final size:93
Alignment explanation
Indices: 50966315--50966486 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50966305 GCCCATAAGT
* *
50966315 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50966380 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
50966408 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50966473 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
50966487 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50966482 original size:46 final size:46
Alignment explanation
Indices: 50966307--50966482 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
50966297 TGTAACCCGC
* * *
50966307 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
50966353 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
50966403 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
50966446 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50966483 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:50968904 original size:29 final size:29
Alignment explanation
Indices: 50968865--50968952 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
50968855 CAAAGATAAC
*
50968865 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
50968894 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
50968923 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
50968953 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:50968923 original size:15 final size:15
Alignment explanation
Indices: 50968865--50968943 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
50968855 CAAAGATAAC
*
50968865 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
50968879 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
50968894 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
50968908 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
50968923 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
50968938 AAGAAA
1 AAGAAA
50968944 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:50968952 original size:15 final size:15
Alignment explanation
Indices: 50968876--50968952 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
50968866 AGAAAACCGA
50968876 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
50968891 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
50968905 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
50968919 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
50968935 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
50968950 ATA
1 ATA
50968953 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:50972005 original size:93 final size:93
Alignment explanation
Indices: 50971893--50972064 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50971883 GCCCATAAGT
* *
50971893 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50971958 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
50971986 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50972051 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
50972065 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50972060 original size:46 final size:46
Alignment explanation
Indices: 50971885--50972060 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
50971875 TGTAACCCGC
* * *
50971885 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
50971931 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
50971981 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
50972024 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50972061 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:50973634 original size:40 final size:40
Alignment explanation
Indices: 50973589--50973755 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
50973579 CGGAATATAA
50973589 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
50973629 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
50973669 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
50973709 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
50973748 CCGGATAT
1 CCGGATAT
50973756 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50974597 original size:17 final size:19
Alignment explanation
Indices: 50974574--50974619 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
50974564 AAGAAGCATG
50974574 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
50974592 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
50974610 AATCATGCTC
1 AATCATGCTC
50974620 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:50979731 original size:40 final size:40
Alignment explanation
Indices: 50979686--50979852 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
50979676 CGGAATATAA
50979686 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
50979726 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
50979766 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
50979806 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
50979845 CCGGATAT
1 CCGGATAT
50979853 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50980695 original size:17 final size:19
Alignment explanation
Indices: 50980672--50980717 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
50980662 AAGAAGCATG
50980672 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
50980690 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
50980708 AATCATGCTC
1 AATCATGCTC
50980718 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:50985672 original size:43 final size:43
Alignment explanation
Indices: 50985516--50985680 Score: 169
Period size: 43 Copynumber: 3.9 Consensus size: 43
50985506 AGCTCATACA
* * ** *
50985516 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACAT-ATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACATAAT-G
* * * *
50985558 ATGCCGATAG-CCCAG-CTATGGTCTTACTCGA-AATCAAATAACG
1 ATGCCAAT-GTCCCAGAC-ATGGTCTTACAC-ATAATCACATAATG
*
50985601 ATGCAAATGTCCCAGACATGGTCTTACACATAATCACATAATG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACATAATG
50985644 ATGCCAATGTCCCAGACATGGTCTTACACATAATCAC
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCAC
50985681 TCCTCGTTAA
Statistics
Matches: 101, Mismatches: 14, Indels: 15
0.78 0.11 0.12
Matches are distributed among these distances:
42 7 0.07
43 92 0.91
44 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACATAATCACATAATG
Found at i:50990462 original size:36 final size:36
Alignment explanation
Indices: 50990415--50990486 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
50990405 TATGCACATC
50990415 AAAATCGCAAATCATGGCATTATTTTAGTGATTAAA
1 AAAATCGCAAATCATGGCATTATTTTAGTGATTAAA
50990451 AAAATCGCAAATCATGGCATTATTTTAGTGATTAAA
1 AAAATCGCAAATCATGGCATTATTTTAGTGATTAAA
50990487 CACTCTTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (36 bp):
AAAATCGCAAATCATGGCATTATTTTAGTGATTAAA
Found at i:50993662 original size:27 final size:26
Alignment explanation
Indices: 50993610--50993669 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
50993600 ACATATATAT
*
50993610 ATATCTGTTCTGGTGCCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
50993636 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
50993663 ATATCTG
1 ATATCTG
50993670 GCAGCTCGCT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:51002949 original size:47 final size:47
Alignment explanation
Indices: 51002896--51003237 Score: 585
Period size: 47 Copynumber: 7.3 Consensus size: 47
51002886 ATAAGATATG
* *
51002896 TATATGTGGTAAAGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
* *
51002943 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATATGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
51002990 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
*
51003037 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
*
51003084 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
*
51003131 TATATGTGATACGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
* * *
51003178 TATATGTGATAAGGCCAAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
*
51003225 TAAATGTGATAAG
1 TATATGTGATAAG
51003238 TCCCGAAGGG
Statistics
Matches: 281, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 281 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
Found at i:51006842 original size:40 final size:40
Alignment explanation
Indices: 51006797--51006963 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
51006787 CGGAATATAA
*
51006797 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
51006837 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
51006877 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
51006917 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
51006956 CCGGATAT
1 CCGGATAT
51006964 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51006947 original size:80 final size:79
Alignment explanation
Indices: 51006813--51006963 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
51006803 ATAACCATGT
*
51006813 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
51006878 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
51006893 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
51006956 CCGGATAT
64 CCGGATAT
51006964 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:51008216 original size:55 final size:56
Alignment explanation
Indices: 51008146--51008254 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 56
51008136 CTCCCTTTTC
* *
51008146 CTTAGTATTTTCGGCCAA-GAA-GTGAAAAAGATGAACAAATTTTTTTTCTTTCTTT
1 CTTAGGATATTCGGCCAAGGAATG-GAAAAAGATGAACAAATTTTTTTTCTTTCTTT
* * ** *
51008201 CTTAGGATATTCGGCCAAGGCATGGAGAAAGATGAACACTTTTTTTTTTTTTCT
1 CTTAGGATATTCGGCCAAGGAATGGAAAAAGATGAACAAATTTTTTTTCTTTCT
51008255 CATCCTACTC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
55 16 0.36
56 28 0.62
57 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.40
Consensus pattern (56 bp):
CTTAGGATATTCGGCCAAGGAATGGAAAAAGATGAACAAATTTTTTTTCTTTCTTT
Found at i:51014915 original size:39 final size:38
Alignment explanation
Indices: 51014793--51014921 Score: 159
Period size: 40 Copynumber: 3.3 Consensus size: 38
51014783 CGGAATATAA
*
51014793 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCA-CTGCAC-AATGCCTTCGGGTCTTAGC
* **
51014833 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-GCAC-AATGCCTTCGGGTCTTAGC
* *
51014873 CCGGATATAGCCACTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTGCACAA-TGCCTTCGGGTCTTAGC
51014912 CCGGATATAA
1 CCGGATATAA
51014922 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.03
39 30 0.39
40 44 0.58
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (38 bp):
CCGGATATAACCACTGCACAATGCCTTCGGGTCTTAGC
Found at i:51014942 original size:79 final size:79
Alignment explanation
Indices: 51014793--51014958 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
51014783 CGGAATATAA
* *
51014793 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATCTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
51014858 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
51014873 CCGGATATAGCCA-CTGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAAT
1 CCGGATATAACCATCTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-
*
51014935 TGTCTTCGGGCTTAGC
64 TGCCTTCGGGCTTAGC
51014951 CCGGATAT
1 CCGGATAT
51014959 CATTCAATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 17 0.23
79 46 0.61
80 12 0.16
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATCTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:51014954 original size:39 final size:38
Alignment explanation
Indices: 51014809--51014958 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 38
51014799 ATAACCATGT
* * * *
51014809 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA-TA-GCCAC
51014849 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCAC
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCCAC
* *
51014887 TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA-
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT-A--GCCAC
* *
51014928 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
51014959 CATTCAATTT
Statistics
Matches: 96, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
38 5 0.05
39 42 0.44
40 44 0.46
41 2 0.02
42 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (38 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCCAC
Found at i:51017561 original size:48 final size:48
Alignment explanation
Indices: 51017468--51018067 Score: 1104
Period size: 48 Copynumber: 12.6 Consensus size: 48
51017458 AAAGTGTAAT
51017468 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
51017516 TATGTGGT--A----AATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
51017558 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
51017606 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
51017654 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
51017702 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
51017750 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
51017798 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
51017846 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
51017894 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
51017942 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
51017990 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
51018038 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
51018068 TGTTGTAACT
Statistics
Matches: 536, Mismatches: 10, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
42 41 0.08
44 1 0.00
46 1 0.00
48 493 0.92
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:51018165 original size:37 final size:37
Alignment explanation
Indices: 51018115--51018245 Score: 154
Period size: 37 Copynumber: 3.2 Consensus size: 37
51018105 AATATATTCT
51018115 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
51018152 GGGTAAGACCCGATGACGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGT--------A--A-GACCCGATGACTACGTGTGGAGATTATGTCC
*
51018200 GGGTAAGACCCGATGACTACGTGTAGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
51018237 GGGTAAGAC
1 GGGTAAGAC
51018246 TTCGTAATAA
Statistics
Matches: 82, Mismatches: 1, Indels: 22
0.78 0.01 0.21
Matches are distributed among these distances:
37 43 0.52
38 1 0.01
40 1 0.01
45 1 0.01
47 1 0.01
48 35 0.43
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:51018192 original size:48 final size:48
Alignment explanation
Indices: 51018121--51018216 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
51018111 TTCTGGGTAA
51018121 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGAC
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGAC
51018169 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGAC
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGAC
51018217 TACGTGTAGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.21
Consensus pattern (48 bp):
GACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGAC
Done.