Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 187 of 427
Found at i:51570867 original size:46 final size:46
Alignment explanation
Indices: 51570708--51570881 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
51570698 GTTTGGGCAT
*
51570708 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *** * * * *
51570753 TCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC
*
51570798 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
51570846 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51570882 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
44 2 0.02
45 28 0.26
46 46 0.43
47 27 0.25
48 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:51575614 original size:46 final size:45
Alignment explanation
Indices: 51575563--51575693 Score: 140
Period size: 46 Copynumber: 2.8 Consensus size: 45
51575553 ATGTTTGGGC
51575563 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-T-GCGA
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACTAG-GA
* * *** * *
51575607 ATGTCCGAACTCGTTGAGTTGAGTCCTAGTTCGAGAGATGTAACTAGGC
1 A--TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GACTAGGA
51575656 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51575694 GCGGGTTACA
Statistics
Matches: 68, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
44 1 0.01
46 31 0.46
47 31 0.46
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACTAGGA
Found at i:51577953 original size:47 final size:48
Alignment explanation
Indices: 51577884--51578147 Score: 174
Period size: 47 Copynumber: 5.6 Consensus size: 48
51577874 GTGTCAATGT
* * *
51577884 CATGTCCTAAACATGCTCTTACACAAGCTCAT-ATCTC-AAGTCGATG
1 CATGTCCCAAACATGGTCTTACACTAGCTCATCATCTCGAAGTCGATG
* *
51577930 CCATGTCCCAAACATGGTCTTACACT-GACT-ATCATCTCGTAGCCGATG
1 -CATGTCCCAAACATGGTCTTACACTAG-CTCATCATCTCGAAGTCGATG
* * * * *
51577978 CATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTCG-AGGCTGATG
1 CATGTCCCAAACATGGTCTTACACTAGCTCATCATCTCGAAGTC-GATG
* * * * *
51578024 CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTCTATGTCGATG
1 CATGTCCCAAACATGGTCTTACACTAGCTCATCATCTCGAAGTCGATG
* * * *** * *
51578070 CCATGTCTCAAACATGGTCTTGCACTGGCTC-TCA-CAATATGGCTGATG
1 -CATGTCCCAAACATGGTCTTACACTAGCTCATCATCTCGAAGTC-GATG
**
51578118 CATGTCCCGGACAT-GTCTTACACTAGCTCA
1 CATGTCCCAAACATGGTCTTACACTAGCTCA
51578148 CAATAACCCC
Statistics
Matches: 177, Mismatches: 28, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
45 3 0.02
46 74 0.42
47 75 0.42
48 25 0.14
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CATGTCCCAAACATGGTCTTACACTAGCTCATCATCTCGAAGTCGATG
Found at i:51578014 original size:46 final size:45
Alignment explanation
Indices: 51577925--51578146 Score: 173
Period size: 46 Copynumber: 4.8 Consensus size: 45
51577915 TATCTCAAGT
* * *
51577925 CGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGC--TCGTCTCGTAGGC
51577973 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-T-CGTCTCGTAGGC
* * * *
51578019 TGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTC-TATGT
1 CGATGCATGTCCCAGACATGTCTTACACT-G-GCTCGTCTCGTAGGC
* * * * *
51578065 CGATGCCATGTCTCAAACATGGTCTTGCACTGGCTC-TCACAATATGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCGTCTC-GTA-GGC
* * *
51578113 TGATGCATGTCCCGGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTC
51578147 ACAATAACCC
Statistics
Matches: 142, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
45 5 0.04
46 76 0.54
47 41 0.29
48 20 0.14
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCGTCTCGTAGGC
Found at i:51581788 original size:28 final size:28
Alignment explanation
Indices: 51581745--51581799 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
51581735 CATGATAGTA
*
51581745 AAAGTGATTGGACCTAATGGGCCATATG
1 AAAGAGATTGGACCTAATGGGCCATATG
* *
51581773 AAAGAGATTGGGCCTAGTGGGCCATAT
1 AAAGAGATTGGACCTAATGGGCCATAT
51581800 TCAGATATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.24
Consensus pattern (28 bp):
AAAGAGATTGGACCTAATGGGCCATATG
Found at i:51585108 original size:2 final size:2
Alignment explanation
Indices: 51585101--51585130 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
51585091 ATGTGTTATG
51585101 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51585131 GTGTGTGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51585205 original size:39 final size:40
Alignment explanation
Indices: 51585162--51585300 Score: 203
Period size: 39 Copynumber: 3.5 Consensus size: 40
51585152 AGTGGAGAAG
*
51585162 TATATCCGGGCT-AAGTCCCGAAGGCATTCGTACTGGTGT
1 TATATCCGGGCTAAAGTCCCGAAGGCATTCGTGCTGGTGT
51585201 TATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
51585240 TATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAAGTCCCGAAGGCATTCGTGCTGGTGT
*
51585279 TACATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-TAAAGTCCCG
51585301 CATGCTTTGT
Statistics
Matches: 93, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 71 0.76
40 22 0.24
ACGTcount: A:0.19, C:0.24, G:0.28, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:51585308 original size:40 final size:39
Alignment explanation
Indices: 51585162--51585317 Score: 190
Period size: 39 Copynumber: 4.0 Consensus size: 39
51585152 AGTGGAGAAG
* * *
51585162 TATATCCGGGCT-AAGTCCCGAAGGCATTCGTACTGGTGT
1 TATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTGT
* *
51585201 TATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTGT
*
51585240 TATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTAT
1 TATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTGT
* * *
51585279 TACATCCGGGCTTAAAGTCCCGCATGCTTTGTGGTGGTG
1 TATATCCGGGC-TAAAGTCCCGCAGGCTTTGTGCTGGTG
51585318 ATTGATTTGG
Statistics
Matches: 107, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
39 71 0.66
40 36 0.34
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.29
Consensus pattern (39 bp):
TATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTGT
Found at i:51591380 original size:19 final size:20
Alignment explanation
Indices: 51591349--51591387 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
51591339 AGGATGTGAC
*
51591349 ATTAATGATTTTTTATAATT
1 ATTAATGATTTTTAATAATT
51591369 ATTAAT-ATTTTTAATAATT
1 ATTAATGATTTTTAATAATT
51591388 CTAGAACACC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (20 bp):
ATTAATGATTTTTAATAATT
Found at i:51591557 original size:17 final size:17
Alignment explanation
Indices: 51591537--51591596 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 17
51591527 TTTAAATGTC
51591537 TATTTTTATTAATTTTA
1 TATTTTTATTAATTTTA
*
51591554 TATTTTTATAAATTTTAA
1 TATTTTTATTAATTTT-A
*
51591572 TATTTTTTTTACATATTTA
1 TATTTTTATTA-AT-TTTA
51591591 -ATTTTT
1 TATTTTT
51591597 TATAACTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 15 0.41
18 16 0.43
19 3 0.08
20 3 0.08
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (17 bp):
TATTTTTATTAATTTTA
Found at i:51591607 original size:17 final size:18
Alignment explanation
Indices: 51591537--51591607 Score: 67
Period size: 17 Copynumber: 3.9 Consensus size: 18
51591527 TTTAAATGTC
51591537 TATTTTTATTAA-TTTT-A
1 TATTTTTA-TAACTTTTAA
*
51591554 TATTTTTATAAATTTTAA
1 TATTTTTATAACTTTTAA
* *
51591572 TATTTTTTTTACATATTTAA
1 TATTTTTATAAC-T-TTTAA
51591592 T-TTTTTATAACTTTTA
1 TATTTTTATAACTTTTA
51591608 CTAATATTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
16 3 0.07
17 16 0.36
18 11 0.24
19 9 0.20
20 6 0.13
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (18 bp):
TATTTTTATAACTTTTAA
Found at i:51598161 original size:11 final size:10
Alignment explanation
Indices: 51598136--51598168 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
51598126 AATTAATTAT
51598136 TTTAATTAA-
1 TTTAATTAAG
51598145 TTTAATTAAAG
1 TTTAATT-AAG
51598156 TTTAATTAAG
1 TTTAATTAAG
51598166 TTT
1 TTT
51598169 GAAAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.32
10 8 0.36
11 7 0.32
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (10 bp):
TTTAATTAAG
Found at i:51601348 original size:41 final size:42
Alignment explanation
Indices: 51601291--51601374 Score: 161
Period size: 41 Copynumber: 2.0 Consensus size: 42
51601281 GACCCATACT
51601291 AAAACCCATTTGATTTTGCAGTGCAATTAC-TGAACAATTGC
1 AAAACCCATTTGATTTTGCAGTGCAATTACTTGAACAATTGC
51601332 AAAACCCATTTGATTTTGCAGTGCAATTACTTGAACAATTGC
1 AAAACCCATTTGATTTTGCAGTGCAATTACTTGAACAATTGC
51601374 A
1 A
51601375 TGGTTTAATA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 30 0.71
42 12 0.29
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (42 bp):
AAAACCCATTTGATTTTGCAGTGCAATTACTTGAACAATTGC
Found at i:51612362 original size:47 final size:46
Alignment explanation
Indices: 51612293--51612461 Score: 159
Period size: 47 Copynumber: 3.6 Consensus size: 46
51612283 TATAATGCTG
*
51612293 ATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATGTTAAGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTT-AGTCA
* * * *
51612340 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCACT-TATCCGTGCC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-TGT-T-AGT-CA
* * * *
51612389 ATGCCATGTCCTAGACATGGTCTTACACTAACACATCATG-TAG-CTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCATGTTAGTC-A
51612435 ATG-CATGTCCCAGACAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
51612462 GGCTTACATC
Statistics
Matches: 102, Mismatches: 14, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
44 10 0.10
45 14 0.14
46 3 0.03
47 36 0.35
48 5 0.05
49 31 0.30
50 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.30
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTTAGTCA
Found at i:51612406 original size:49 final size:47
Alignment explanation
Indices: 51612293--51612418 Score: 164
Period size: 47 Copynumber: 2.6 Consensus size: 47
51612283 TATAATGCTG
51612293 ATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATGTTAAGTCA
1 ATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATGTTAAGTCA
* * * ** *
51612340 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCACT-TATCCGTGCC
1 ATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCA-TGT-TAAGT-CA
51612389 ATGCCATGTCCTAGACATGGTCTTACACTA
1 ATGCCATGTCCTAGACATGGTCTTACACTA
51612419 ACACATCATG
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
47 35 0.51
48 4 0.06
49 29 0.43
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.31
Consensus pattern (47 bp):
ATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATGTTAAGTCA
Found at i:51612509 original size:37 final size:37
Alignment explanation
Indices: 51612449--51612519 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
51612439 ATGTCCCAGA
*
51612449 CATGTCTTACACTGGCTTACATCTAAAGGCCGACATG
1 CATGTCTTACACTAGCTTACATCTAAAGGCCGACATG
* *
51612486 CATGTCTTACACTAGCTCT-CATCTCAATGCCGAC
1 CATGTCTTACACTAGCT-TACATCTAAAGGCCGAC
51612520 GCCATGTCCC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
37 29 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (37 bp):
CATGTCTTACACTAGCTTACATCTAAAGGCCGACATG
Found at i:51620146 original size:46 final size:46
Alignment explanation
Indices: 51620095--51620221 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 46
51620085 CATGTAGCCA
* *
51620095 ATGCATGTCCCAGACATGACTTACACTGGCT-TACATCTCGAGG-CTG
1 ATGCATGTCCCAGACATGACTTACACTAGCTCT-CATCTCAAGGTC-G
* * *
51620141 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGTCG
1 ATGCATGTCCCAGACATGACTTACACTAGCTCTCATCTCAAGGTCG
*
51620187 ATGCCATGTCCTAGACATGATCTTACACTAGCTCT
1 ATG-CATGTCCCAGACATGA-CTTACACTAGCTCT
51620222 TATAATGTGG
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
46 40 0.57
47 16 0.23
48 14 0.20
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGACTTACACTAGCTCTCATCTCAAGGTCG
Found at i:51620242 original size:47 final size:46
Alignment explanation
Indices: 51620140--51620264 Score: 141
Period size: 47 Copynumber: 2.7 Consensus size: 46
51620130 TCTCGAGGCT
*
51620140 GATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGTC
1 GATGACATGTCCCAGACATGTCTTACACTAGCTCTC-TATCAATGTC
* *
51620186 GATGCCATGTCCTAGACATGATCTTACACTAGCTCT-TAT-AATGTGGCC
1 GATGACATGTCCCAGACATG-TCTTACACTAGCTCTCTATCAATGT---C
*
51620234 GAT-ACATGTCCCGGACATGTCTTACACTAGC
1 GATGACATGTCCCAGACATGTCTTACACTAGC
51620265 ACACAAATGA
Statistics
Matches: 69, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
45 5 0.07
46 18 0.26
47 27 0.39
48 19 0.28
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
GATGACATGTCCCAGACATGTCTTACACTAGCTCTCTATCAATGTC
Found at i:51623464 original size:38 final size:38
Alignment explanation
Indices: 51623404--51623728 Score: 416
Period size: 38 Copynumber: 8.4 Consensus size: 38
51623394 AATTATATCG
*
51623404 GATGCACATACGTGCCCCTGTTGTACTTTGGTACCCCT
1 GATGCACATACGTGCCCCTGTTGTACTTCGGTACCCCT
* * **
51623442 GATGCATATACTTGCCGTTGTTGTACTTCGGTACCCCT
1 GATGCACATACGTGCCCCTGTTGTACTTCGGTACCCCT
* **
51623480 GATGCACATACGTGCCCTTGTTGTACTTCAATACCCCT
1 GATGCACATACGTGCCCCTGTTGTACTTCGGTACCCCT
* *
51623518 GATGCACATATGTGCCCCTATTGTACTTCGGTACCTCCT
1 GATGCACATACGTGCCCCTGTTGTACTTCGGTACC-CCT
* **
51623557 GATGCACATACGTGCCCTTGTTGTACTTCAATACCCCT
1 GATGCACATACGTGCCCCTGTTGTACTTCGGTACCCCT
* *
51623595 GATGCACATATGTGCCCCTATTGTACTTCGGTACCTCCT
1 GATGCACATACGTGCCCCTGTTGTACTTCGGTACC-CCT
* **
51623634 GATGCACATACGTGCCCTTGTTGTACTTCAATACCCCT
1 GATGCACATACGTGCCCCTGTTGTACTTCGGTACCCCT
* *
51623672 GATGCACATATGTGCCCCTATTGTACTTCGGTACCCCT
1 GATGCACATACGTGCCCCTGTTGTACTTCGGTACCCCT
* *
51623710 AAATTGCACTTACGTGCCC
1 -GA-TGCACATACGTGCCC
51623729 TTGATTTCAT
Statistics
Matches: 245, Mismatches: 38, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
38 165 0.67
39 67 0.27
40 13 0.05
ACGTcount: A:0.19, C:0.31, G:0.18, T:0.32
Consensus pattern (38 bp):
GATGCACATACGTGCCCCTGTTGTACTTCGGTACCCCT
Found at i:51623583 original size:77 final size:76
Alignment explanation
Indices: 51623404--51623731 Score: 514
Period size: 77 Copynumber: 4.3 Consensus size: 76
51623394 AATTATATCG
* *** * ** *
51623404 GATGCACATACGTGCCCCTGTTGTACTTTGGTACCCCTGATGCATATACT-TGCCGTTGTTGTAC
1 GATGCACATACGTGCCCTTGTTGTACTTCAATACCCCTGATGCACATA-TGTGCCCCTATTGTAC
51623468 TTCGGTACCCCT
65 TTCGGTACCCCT
51623480 GATGCACATACGTGCCCTTGTTGTACTTCAATACCCCTGATGCACATATGTGCCCCTATTGTACT
1 GATGCACATACGTGCCCTTGTTGTACTTCAATACCCCTGATGCACATATGTGCCCCTATTGTACT
51623545 TCGGTACCTCCT
66 TCGGTACC-CCT
51623557 GATGCACATACGTGCCCTTGTTGTACTTCAATACCCCTGATGCACATATGTGCCCCTATTGTACT
1 GATGCACATACGTGCCCTTGTTGTACTTCAATACCCCTGATGCACATATGTGCCCCTATTGTACT
51623622 TCGGTACCTCCT
66 TCGGTACC-CCT
51623634 GATGCACATACGTGCCCTTGTTGTACTTCAATACCCCTGATGCACATATGTGCCCCTATTGTACT
1 GATGCACATACGTGCCCTTGTTGTACTTCAATACCCCTGATGCACATATGTGCCCCTATTGTACT
51623699 TCGGTACCCCT
66 TCGGTACCCCT
* *
51623710 AAATTGCACTTACGTGCCCTTG
1 -GA-TGCACATACGTGCCCTTG
51623732 ATTTCATTTT
Statistics
Matches: 238, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
75 1 0.00
76 66 0.28
77 154 0.65
78 17 0.07
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.33
Consensus pattern (76 bp):
GATGCACATACGTGCCCTTGTTGTACTTCAATACCCCTGATGCACATATGTGCCCCTATTGTACT
TCGGTACCCCT
Found at i:51623610 original size:115 final size:115
Alignment explanation
Indices: 51623404--51623728 Score: 427
Period size: 115 Copynumber: 2.8 Consensus size: 115
51623394 AATTATATCG
* * * *
51623404 GATGCACATACGTGCCCCTGTTGTACTTTGGTACCCCTGATGCATATACTTGCCGTTGTTGTACT
1 GATGCACATACGTGCCCCTGTTGTACTTCGGTACCCCTGATGCACATACGTGCCCTTGTTGTACT
* *
51623469 TCGGTACCCCTGATGCACATACGTGCCCTTGTTGTACTTCAATACC-CCT
66 TCGGTACCCCTGATGCACATACGTGCCCCTATTGTACTTCAATACCTCCT
* *
51623518 GATGCACATATGTGCCCCTATTGTACTTCGGTACCTCCTGATGCACATACGTGCCCTTGTTGTAC
1 GATGCACATACGTGCCCCTGTTGTACTTCGGTACC-CCTGATGCACATACGTGCCCTTGTTGTAC
** * **
51623583 TTCAATACCCCTGATGCACATATGTGCCCCTATTGTACTTCGGTACCTCCT
65 TTCGGTACCCCTGATGCACATACGTGCCCCTATTGTACTTCAATACCTCCT
* ** * * *
51623634 GATGCACATACGTGCCCTTGTTGTACTTCAATACCCCTGATGCACATATGTGCCCCTATTGTACT
1 GATGCACATACGTGCCCCTGTTGTACTTCGGTACCCCTGATGCACATACGTGCCCTTGTTGTACT
* *
51623699 TCGGTACCCCTAAATTGCACTTACGTGCCC
66 TCGGTACCCCT-GA-TGCACATACGTGCCC
51623729 TTGATTTCAT
Statistics
Matches: 181, Mismatches: 26, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
114 32 0.18
115 102 0.56
116 34 0.19
117 13 0.07
ACGTcount: A:0.19, C:0.31, G:0.18, T:0.32
Consensus pattern (115 bp):
GATGCACATACGTGCCCCTGTTGTACTTCGGTACCCCTGATGCACATACGTGCCCTTGTTGTACT
TCGGTACCCCTGATGCACATACGTGCCCCTATTGTACTTCAATACCTCCT
Found at i:51627961 original size:53 final size:54
Alignment explanation
Indices: 51627903--51628105 Score: 210
Period size: 53 Copynumber: 3.8 Consensus size: 54
51627893 CTTTTTAAAC
* * **
51627903 TACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTATA-AACT
1 TACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACT
* * * * * **
51627956 CACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTT
1 TACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-AACT
* * * * * *
51628011 TATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTAGCCTTGTAGAACT
1 TACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACT
* * *
51628065 TACCAATGCAATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
51628106 AAACCCTAAT
Statistics
Matches: 118, Mismatches: 30, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 42 0.36
54 35 0.30
55 41 0.35
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (54 bp):
TACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACT
Found at i:51630491 original size:40 final size:40
Alignment explanation
Indices: 51630425--51630575 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
51630415 AAATTGAATG
* * *
51630425 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
51630464 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
51630504 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
51630544 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
51630576 ACTTGATTAT
Statistics
Matches: 95, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
39 16 0.17
40 77 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:51630589 original size:40 final size:40
Alignment explanation
Indices: 51630461--51630591 Score: 167
Period size: 40 Copynumber: 3.3 Consensus size: 40
51630451 TATGCTGGAA
* * * *
51630461 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
* *
51630501 GTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
51630541 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
51630581 ATTATATCCGG
1 ATTATATCCGG
51630592 TTATATTCCG
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:51635217 original size:30 final size:30
Alignment explanation
Indices: 51635183--51635243 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
51635173 TCCTTAACTC
51635183 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
51635213 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
51635243 A
1 A
51635244 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:51638979 original size:28 final size:29
Alignment explanation
Indices: 51638912--51639012 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
51638902 ATAGTGAATC
*
51638912 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
51638941 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
51638969 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
51638999 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51639013 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:51646790 original size:28 final size:29
Alignment explanation
Indices: 51646723--51646823 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
51646713 ATAGTGAATC
*
51646723 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
51646752 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
51646780 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
51646810 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51646824 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:51654604 original size:28 final size:29
Alignment explanation
Indices: 51654537--51654637 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
51654527 ATAGTGAATC
*
51654537 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
51654566 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
51654594 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
51654624 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51654638 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:51658178 original size:12 final size:13
Alignment explanation
Indices: 51658159--51658191 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
51658149 AGGTTCAGCT
51658159 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
51658172 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
51658184 ATGGAGAA
1 ATGGAGAA
51658192 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:51659961 original size:40 final size:39
Alignment explanation
Indices: 51659924--51660145 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 39
51659914 GCTACTCGTT
*
51659924 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
51659964 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
*
51660004 CAAATGCCTTCGG-CTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
*
51660042 C-AATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
51660081 C-AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
51660121 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
51660146 CATCATTCGA
Statistics
Matches: 168, Mismatches: 8, Indels: 12
0.89 0.04 0.06
Matches are distributed among these distances:
37 11 0.07
38 24 0.14
39 59 0.35
40 67 0.40
41 7 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:51668198 original size:79 final size:79
Alignment explanation
Indices: 51668081--51668305 Score: 294
Period size: 79 Copynumber: 2.8 Consensus size: 79
51668071 GCTACTCGTT
* * * *
51668081 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGATCTTAGTCCGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
51668145 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* *
51668161 CAAATGCCTTCGGATCTTAGTCCGATTTAGTAACTCGCACGAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGATCTTAGTCCGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
51668225 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* * * *
51668240 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGATCTTAGTCC-GATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
51668304 GA
64 GA
51668306 CATCATTCGA
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
78 3 0.02
79 70 0.55
80 45 0.35
81 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGATCTTAGTCCGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:51668305 original size:40 final size:40
Alignment explanation
Indices: 51668081--51668305 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
51668071 GCTACTCGTT
*
51668081 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
51668121 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
*
51668161 CAAATGCCTTCGGATCTTAGTCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
51668200 CGAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * *
51668240 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
51668281 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGA
51668306 CATCATTCGA
Statistics
Matches: 170, Mismatches: 10, Indels: 10
0.89 0.05 0.05
Matches are distributed among these distances:
39 41 0.24
40 117 0.69
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:51675028 original size:55 final size:55
Alignment explanation
Indices: 51674969--51675077 Score: 141
Period size: 55 Copynumber: 2.0 Consensus size: 55
51674959 GCTGCCAAAT
* *
51674969 ACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCACCAGA
1 ACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCACCAGA
* * *
51675024 ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCACCAG
1 ACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCACCAG
51675078 GACGCTTCCT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
54 1 0.02
55 29 0.62
56 17 0.36
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (55 bp):
ACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCACCAGA
Found at i:51675040 original size:27 final size:27
Alignment explanation
Indices: 51674988--51675077 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
51674978 GTGACAGAGT
51674988 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
51675017 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
51675044 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
51675072 CACCAG
1 CACCAG
51675078 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:51675230 original size:28 final size:28
Alignment explanation
Indices: 51675183--51675275 Score: 143
Period size: 28 Copynumber: 3.3 Consensus size: 28
51675173 AAATTAACCC
*
51675183 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
*
51675211 TAAGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
51675239 TAGGGGTATAATGGTAATTTTGCATGCA
1 TAGGGGTATAATGGTAATTTTGCATACA
51675267 TAGGGGTAT
1 TAGGGGTAT
51675276 TCTAGTACAT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 1 0.02
28 59 0.98
ACGTcount: A:0.30, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:51676360 original size:12 final size:13
Alignment explanation
Indices: 51676341--51676373 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
51676331 GGGTTCAGCT
51676341 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
51676354 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
51676366 ATGGAGAA
1 ATGGAGAA
51676374 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:51681505 original size:27 final size:27
Alignment explanation
Indices: 51681475--51681707 Score: 263
Period size: 27 Copynumber: 8.6 Consensus size: 27
51681465 TTAGTTTATC
51681475 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
51681502 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
51681529 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
51681556 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
51681583 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
51681610 AAATTACCAAAATACCCCTCATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
51681637 AAATTACTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** **
51681664 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
51681691 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
51681708 TTGATGTACA
Statistics
Matches: 179, Mismatches: 25, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
26 4 0.02
27 173 0.97
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:51681612 original size:81 final size:81
Alignment explanation
Indices: 51681466--51681707 Score: 294
Period size: 81 Copynumber: 3.0 Consensus size: 81
51681456 TAGAATACTT
* * * * *
51681466 TAGTTTATCAAATTACCAAAATACCCCTGGTTTGTAAAATTA-CTAAAATACCCTTTGTTTATAA
1 TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATC-AAAATACCCCTAGTTTGTAA
51681530 AATTACCAAAATACCCC
65 AATTACCAAAATACCCC
51681547 TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAA
1 TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAA
51681612 ATTACCAAAATACCCC
66 ATTACCAAAATACCCC
* * ** ** * *
51681628 TCA-TTTGTGAAATTACTAAAATA-CCCTCGACTTGTAAAATTATTGAAATA-CCCTCGACTTGT
1 T-AGTTTGTAAAATTACCAAAATACCCCT-GGTTTGTAAAATTATCAAAATACCCCTAG-TTTGT
*
51681690 AAAATTACCAAAGTACCC
63 AAAATTACCAAAATACCC
51681708 TTGATGTACA
Statistics
Matches: 143, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
80 9 0.06
81 132 0.92
82 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (81 bp):
TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAA
ATTACCAAAATACCCC
Found at i:51681708 original size:27 final size:27
Alignment explanation
Indices: 51681475--51681762 Score: 241
Period size: 27 Copynumber: 10.7 Consensus size: 27
51681465 TTAGTTTATC
*
51681475 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
51681502 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
*
51681529 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
51681556 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
51681583 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
51681610 AAATTACCAAAATACCCCTC-ATTTGTG
1 AAATTACCAAAATA-CCCTCGATTTGTA
* *
51681637 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
51681664 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
51681691 AAATTACCAAAGTACCCTTGA--TGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** **
51681716 CAGAATTACCATTTTACCCTCGATTTACA
1 -A-AATTACCAAAATACCCTCGATTTGTA
*
51681745 AAATTACCGAAATACCCT
1 AAATTACCAAAATACCCT
51681763 TGTAGGGTAG
Statistics
Matches: 214, Mismatches: 34, Indels: 26
0.78 0.12 0.09
Matches are distributed among these distances:
25 4 0.02
26 6 0.03
27 195 0.91
28 6 0.03
29 3 0.01
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:51681781 original size:27 final size:27
Alignment explanation
Indices: 51681749--51681991 Score: 290
Period size: 27 Copynumber: 9.0 Consensus size: 27
51681739 TTTACAAAAT
*
51681749 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * *
51681776 TGCCGAAATACCCTTGTAGGGTAAAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * *
51681803 TACCAAAATGCCCCTGTAGGGTAAAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* *
51681830 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
** *
51681857 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
*
51681884 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* *
51681911 TACCGAAATACCCCTGTAGGGTTGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
** *
51681938 TATTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * *
51681965 TACCGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
51681991 T
1 T
51681992 TACCATGTTA
Statistics
Matches: 188, Mismatches: 28, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
26 3 0.02
27 185 0.98
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAA
Found at i:51682284 original size:27 final size:26
Alignment explanation
Indices: 51682240--51682291 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
51682230 CTCGCTGCAA
*
51682240 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
51682267 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
51682292 GCAGCCTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:51682516 original size:6 final size:6
Alignment explanation
Indices: 51682507--51682694 Score: 143
Period size: 6 Copynumber: 30.3 Consensus size: 6
51682497 TTGCATTCAC
* * *
51682507 ATTCTG ATTCTG ATTTTG -TTACCTG ATACTG ATTCTG ATTACCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATT--CTG ATTCTG
* *
51682558 ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * * *
51682607 -TTACCTA ATTCTG ATTCTG ATTTTG ATTTTG ATTCTG -TCACCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
51682657 ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
51682695 AATGTTTCTT
Statistics
Matches: 146, Mismatches: 20, Indels: 32
0.74 0.10 0.16
Matches are distributed among these distances:
5 8 0.05
6 117 0.80
7 11 0.08
8 10 0.07
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:51682598 original size:19 final size:19
Alignment explanation
Indices: 51682510--51682662 Score: 134
Period size: 19 Copynumber: 7.8 Consensus size: 19
51682500 CATTCACATT
*
51682510 CTGATTCTGATTTTGTTAC
1 CTGATTCTGATTCTGTTAC
*
51682529 CTGATACTGATTCTGATTAC
1 CTGATTCTGATTCTG-TTAC
*
51682549 CTAATTCTGATTCTGGTT--
1 CTGATTCTGATTCT-GTTAC
51682567 CTGATTCTGATTCTGTTACC
1 CTGATTCTGATTCTGTTA-C
51682587 TGATACTGATTCTGATTCTGTTAC
1 -----CTGATTCTGATTCTGTTAC
*
51682611 CTAATTCTGATTCTGATT--
1 CTGATTCTGATTCTG-TTAC
* * *
51682629 TTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGTTAC
51682648 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
51682663 ATTCTGATTC
Statistics
Matches: 109, Mismatches: 12, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
17 4 0.04
18 25 0.23
19 40 0.37
20 20 0.18
21 1 0.01
24 1 0.01
25 18 0.17
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:51682598 original size:25 final size:25
Alignment explanation
Indices: 51682567--51682628 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 25
51682557 GATTCTGGTT
*
51682567 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
51682592 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
51682617 CTGATTCTGATT
1 CTGATTCTGATT
51682629 TTGATTTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:51682627 original size:37 final size:37
Alignment explanation
Indices: 51682586--51682673 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
51682576 ATTCTGTTAC
* *
51682586 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* * *
51682623 CTGATTTTGATTTTGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
51682660 CTGATTCTGATTCT
1 CTGATTCTGATTCT
51682674 CATTTTGATT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:51682640 original size:62 final size:62
Alignment explanation
Indices: 51682507--51682668 Score: 235
Period size: 62 Copynumber: 2.7 Consensus size: 62
51682497 TTGCATTCAC
*
51682507 ATTCTGATTCTGATTTTGTTACCTGATACTGATTCTGA-----TTACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
*
51682564 GTTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
* * * *
51682626 ATTTTGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG
51682669 ATTCTCATTT
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
57 36 0.39
62 57 0.61
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
Found at i:51682672 original size:31 final size:31
Alignment explanation
Indices: 51682529--51682673 Score: 134
Period size: 31 Copynumber: 4.6 Consensus size: 31
51682519 ATTTTGTTAC
* * *
51682529 CTGATACTGATTCTGATTAC-CTAATTCTGATT
1 CTGATTCTGATTCTGATT-CTGTAA-CCTGATT
* * *
51682561 CTGGTTCTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGATTCTGTAACCTGATT
* *
51682592 CTGATTCTGATTCTG-TTAC-CTAATTCTGATT
1 CTGATTCTGATTCTGATT-CTGTAA-CCTGATT
* * *
51682623 CTGATTTTGATTTTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATTCTGTAACCTGATT
51682654 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
51682674 CATTTTGATT
Statistics
Matches: 90, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
30 4 0.04
31 64 0.71
32 22 0.24
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (31 bp):
CTGATTCTGATTCTGATTCTGTAACCTGATT
Found at i:51682683 original size:18 final size:18
Alignment explanation
Indices: 51682501--51682685 Score: 81
Period size: 19 Copynumber: 9.9 Consensus size: 18
51682491 TTGGGTTTGC
*
51682501 ATTCACATTCTGATTCTG
1 ATTCTCATTCTGATTCTG
** *
51682519 ATT-TTGTTACCTGATACTG
1 ATTCTCATT--CTGATTCTG
* *
51682538 ATTCTGATTACCTAATTCTG
1 ATTCTCATT--CTGATTCTG
**
51682558 ATTCTGGTTCTGATTCTG
1 ATTCTCATTCTGATTCTG
* *
51682576 ATTCT-GTTACCTGATACTG
1 ATTCTCATT--CTGATTCTG
* *
51682595 ATTCTGATTCTG-TTACCTA
1 ATTCTCATTCTGATT--CTG
* *
51682614 ATTCTGATTCTGATTTTG
1 ATTCTCATTCTGATTCTG
* * *
51682632 ATTTTGATTCTG-TCACCTG
1 ATTCTCATTCTGAT--TCTG
*
51682651 ATTCTGATTCTGATTCTG
1 ATTCTCATTCTGATTCTG
*
51682669 ATTCTCATTTTGATTCT
1 ATTCTCATTCTGATTCT
51682686 AGTTCTGATA
Statistics
Matches: 132, Mismatches: 23, Indels: 24
0.74 0.13 0.13
Matches are distributed among these distances:
17 7 0.05
18 49 0.37
19 51 0.39
20 25 0.19
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (18 bp):
ATTCTCATTCTGATTCTG
Found at i:51684084 original size:41 final size:41
Alignment explanation
Indices: 51684039--51684120 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
51684029 GTCAAGGAAA
*
51684039 TCAAAGAGCACAAGTCCCTCCAGGCTTCCAACAATAACCTT
1 TCAAAGAGCACAAGTCCCTCCAGGCTTCCAACAACAACCTT
*
51684080 TCAAAGAGCACAAGTCCCTCCGGGCTTCCAACAACAACCTT
1 TCAAAGAGCACAAGTCCCTCCAGGCTTCCAACAACAACCTT
51684121 ACCGGCAAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.33, C:0.35, G:0.13, T:0.18
Consensus pattern (41 bp):
TCAAAGAGCACAAGTCCCTCCAGGCTTCCAACAACAACCTT
Found at i:51691583 original size:40 final size:40
Alignment explanation
Indices: 51691528--51691645 Score: 209
Period size: 40 Copynumber: 3.0 Consensus size: 40
51691518 GGAAAAAAAA
51691528 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
51691568 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
51691608 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
51691646 GTTACATCCG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:51695700 original size:38 final size:38
Alignment explanation
Indices: 51695644--51695864 Score: 313
Period size: 38 Copynumber: 5.8 Consensus size: 38
51695634 GGCACGAAGG
* * * *
51695644 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
51695682 CCCGGATATATTACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
51695720 CCCGGATATATTA-CAGCACAAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
51695757 CCCGGATATATTACCAGCACGAAGCCTGCGGAATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
51695795 CCCAGATATATTACCAGCACGAAGCCTGTGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
51695833 CCCGGATATAATT-CCAGCA-TATAGCCTGCGGG
1 CCCGGATAT-ATTACCAGCACGA-AGCCTGCGGG
51695865 TCTTTAGGCC
Statistics
Matches: 165, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
37 36 0.22
38 126 0.76
39 3 0.02
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:51695737 original size:75 final size:76
Alignment explanation
Indices: 51695644--51695851 Score: 314
Period size: 75 Copynumber: 2.8 Consensus size: 76
51695634 GGCACGAAGG
* * * *
51695644 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
1 CCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
51695709 GCAGG-ATTTAA
66 GC-GGAATTTAA
51695720 CCCGGATATATTA-CAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
1 CCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
51695784 GCGGAATTTAA
66 GCGGAATTTAA
* * *
51695795 CCCAGATATATTACCAGCACGAAGCCTGTGGGATTTAACCCGGATATAATT-CCAGCA
1 CCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT-ATTACCAGCA
51695852 TATAGCCTGC
Statistics
Matches: 122, Mismatches: 7, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
74 2 0.02
75 69 0.57
76 48 0.39
77 3 0.02
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.22
Consensus pattern (76 bp):
CCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
GCGGAATTTAA
Found at i:51695803 original size:113 final size:114
Alignment explanation
Indices: 51695644--51695864 Score: 336
Period size: 113 Copynumber: 1.9 Consensus size: 114
51695634 GGCACGAAGG
* * * *
51695644 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGAATTTAACCCAGATATATTACCAGCACGAAGCCT
51695709 GCAGGATTTAACCCGGATAT-ATTACAGCACAAAGCCTGCGGGATTTAA
66 GCAGGATTTAACCCGGATATAATTACAGCACAAAGCCTGCGGGATTTAA
* *
51695757 CCCGGATATATTACCAGCACGAAGCCTGCGGAATTTAACCCAGATATATTACCAGCACGAAGCCT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGAATTTAACCCAGATATATTACCAGCACGAAGCCT
** * * *
51695822 GTGGGATTTAACCCGGATATAATTCCAGCATATAGCCTGCGGG
66 GCAGGATTTAACCCGGATATAATTACAGCACAAAGCCTGCGGG
51695865 TCTTTAGGCC
Statistics
Matches: 96, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
113 77 0.80
114 19 0.20
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.22
Consensus pattern (114 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGAATTTAACCCAGATATATTACCAGCACGAAGCCT
GCAGGATTTAACCCGGATATAATTACAGCACAAAGCCTGCGGGATTTAA
Found at i:51702378 original size:44 final size:45
Alignment explanation
Indices: 51702286--51702388 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
51702276 CCTTAACATC
* *
51702286 CGCACACTTAGTGCTTTAAAAAGTTAGCCGAAGCTATAATAATTT
1 CGCACACTTAGTGCTTTAAAAAGTTAACCGAAGCTATAATAATAT
*** ** *
51702331 CGCACACTTAGTGCTTTCTCAA-TTAACCGAAGCTATCTTAGTAT
1 CGCACACTTAGTGCTTTAAAAAGTTAACCGAAGCTATAATAATAT
51702375 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51702389 CTCATATATT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
44 31 0.62
45 19 0.38
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (45 bp):
CGCACACTTAGTGCTTTAAAAAGTTAACCGAAGCTATAATAATAT
Found at i:51710815 original size:17 final size:15
Alignment explanation
Indices: 51710784--51710845 Score: 67
Period size: 14 Copynumber: 4.2 Consensus size: 15
51710774 AATATGTACA
*
51710784 ATATATATATA-AAT
1 ATATATGTATATAAT
51710798 ATATATGCTATAATAAT
1 ATATATG-TAT-ATAAT
*
51710815 A-AAATGTATATAAT
1 ATATATGTATATAAT
51710829 -TATATGTATATAAT
1 ATATATGTATATAAT
51710843 ATA
1 ATA
51710846 AGTTATGAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
14 23 0.57
15 8 0.20
16 5 0.12
17 4 0.10
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.42
Consensus pattern (15 bp):
ATATATGTATATAAT
Found at i:51713809 original size:28 final size:28
Alignment explanation
Indices: 51713711--51713822 Score: 109
Period size: 28 Copynumber: 4.0 Consensus size: 28
51713701 ACCTATATAT
* *
51713711 ATATGGCCCACTAGGCCCAATCTCTTTC
1 ATATGGCCCACTAGGCCCAATCACATTC
* * * *
51713739 ATATAGCCCATTAGGCCCATTCACATTT
1 ATATGGCCCACTAGGCCCAATCACATTC
* * * *
51713767 ATGTGGTCTATTAGGCCCAAATCACATTC
1 ATATGGCCCACTAGGCCC-AATCACATTC
51713796 ATATGG-CCACTAGGCCCAAATCACATT
1 ATATGGCCCACTAGGCCC-AATCACATT
51713823 TACAGTCATG
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 55 0.81
29 13 0.19
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCCAATCACATTC
Found at i:51714097 original size:16 final size:16
Alignment explanation
Indices: 51714043--51714088 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
51714033 CAAACTTTTG
51714043 GCTTTTCAGCATTTCA
1 GCTTTTCAGCATTTCA
51714059 GCTTTTC-GACATTTCA
1 GCTTTTCAG-CATTTCA
*
51714075 GTTTTTCAGCATTT
1 GCTTTTCAGCATTT
51714089 TGGCTTTTCG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 1 0.04
16 25 0.93
17 1 0.04
ACGTcount: A:0.17, C:0.22, G:0.13, T:0.48
Consensus pattern (16 bp):
GCTTTTCAGCATTTCA
Found at i:51717781 original size:30 final size:30
Alignment explanation
Indices: 51717740--51717799 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
51717730 ATTTAATACC
*
51717740 AACTTTGGCAAAATTACATTTTTACCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
* *
51717770 AACTTTTGCAAAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
51717800 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:51720324 original size:23 final size:23
Alignment explanation
Indices: 51720295--51720341 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
51720285 CATCAAGTAC
51720295 TTAAGACTTTTGTGGTCGGTATA
1 TTAAGACTTTTGTGGTCGGTATA
51720318 TTAAGACTTTTGTGGTCGGTATA
1 TTAAGACTTTTGTGGTCGGTATA
51720341 T
1 T
51720342 ACTCGGCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.09, G:0.26, T:0.45
Consensus pattern (23 bp):
TTAAGACTTTTGTGGTCGGTATA
Found at i:51724732 original size:80 final size:80
Alignment explanation
Indices: 51724648--51724796 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
51724638 TATGGTAACC
* * * *
51724648 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
51724712 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
51724728 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
51724793 CCGG
66 CCGG
51724797 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:51724738 original size:40 final size:38
Alignment explanation
Indices: 51724689--51724796 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
51724679 ATCACGATTT
*
51724689 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
51724729 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
51724769 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
51724797 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:51732604 original size:80 final size:80
Alignment explanation
Indices: 51732520--51732668 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
51732510 TATGGTAACC
* * * *
51732520 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
51732584 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
51732600 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
51732665 CCGG
66 CCGG
51732669 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:51732610 original size:40 final size:38
Alignment explanation
Indices: 51732561--51732668 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
51732551 ATCACGATTT
*
51732561 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
51732601 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
51732641 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
51732669 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:51736468 original size:30 final size:30
Alignment explanation
Indices: 51736423--51736482 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
51736413 ATTTAATACC
*
51736423 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACAGTTTTGCCCCTA
* *
51736453 AACTTTTGCATAATTACAGTTTTGCCCCTA
1 AACTTTGGCAAAATTACAGTTTTGCCCCTA
51736483 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACAGTTTTGCCCCTA
Found at i:51738865 original size:21 final size:21
Alignment explanation
Indices: 51738841--51738884 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
51738831 AAAACTTAAA
51738841 TGCTTAAAAAAAAACCAAGTC
1 TGCTTAAAAAAAAACCAAGTC
51738862 TGCTTAAAAAAAAACCAAGTC
1 TGCTTAAAAAAAAACCAAGTC
51738883 TG
1 TG
51738885 AATTATCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.50, C:0.18, G:0.11, T:0.20
Consensus pattern (21 bp):
TGCTTAAAAAAAAACCAAGTC
Found at i:51739713 original size:28 final size:28
Alignment explanation
Indices: 51739671--51739778 Score: 130
Period size: 28 Copynumber: 3.9 Consensus size: 28
51739661 ATACATATAT
*
51739671 ATATGGCCCACTAGGCCCAATCTCTTTC
1 ATATGGCCCACTAGGCCCAATCACTTTC
* *
51739699 ATATGGCCCATTAGGCCCATTCACATTT-
1 ATATGGCCCACTAGGCCCAATCAC-TTTC
* * *
51739727 ATGTGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCACTAGGCCC-AATCACTTTC
51739756 ATATGG-CCACTAGGCCCAATCAC
1 ATATGGCCCACTAGGCCCAATCAC
51739779 GTTTACAGTT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
27 6 0.09
28 50 0.72
29 13 0.19
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCCAATCACTTTC
Found at i:51739742 original size:56 final size:56
Alignment explanation
Indices: 51739674--51739783 Score: 150
Period size: 56 Copynumber: 2.0 Consensus size: 56
51739664 CATATATATA
* * * *
51739674 TGGCCCACTAGGCCC-AATCTCTTTCATATGGCCCATTAGGCCCATTCACATTTATG
1 TGGCCCACTAGGCCCAAATCACATTCATATGG-CCACTAGGCCCAATCACATTTATG
* *
51739730 TGGCCCATTAGGCCCAAATCACATTCATATGGCCACTAGGCCCAATCACGTTTA
1 TGGCCCACTAGGCCCAAATCACATTCATATGGCCACTAGGCCCAATCACATTTA
51739784 CAGTTATGCT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 33 0.70
57 14 0.30
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (56 bp):
TGGCCCACTAGGCCCAAATCACATTCATATGGCCACTAGGCCCAATCACATTTATG
Found at i:51741318 original size:7 final size:7
Alignment explanation
Indices: 51741303--51741335 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
51741293 TTTTATGAGA
51741303 CCCAAAG
1 CCCAAAG
*
51741310 CCTAAAG
1 CCCAAAG
51741317 CCCAAAG
1 CCCAAAG
51741324 CCCAAAG
1 CCCAAAG
51741331 CCCAA
1 CCCAA
51741336 TTCATCTAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.42, C:0.42, G:0.12, T:0.03
Consensus pattern (7 bp):
CCCAAAG
Found at i:51747158 original size:40 final size:40
Alignment explanation
Indices: 51747121--51747213 Score: 125
Period size: 40 Copynumber: 2.3 Consensus size: 40
51747111 GCTACTCGTT
*
51747121 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* * *
51747161 CAGATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
51747201 CGAATGCCTTCGG
1 CAAATGCCTTCGG
51747214 ATCTTAGTCC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 43 0.96
41 2 0.04
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:51747226 original size:40 final size:38
Alignment explanation
Indices: 51747123--51747232 Score: 114
Period size: 40 Copynumber: 2.8 Consensus size: 38
51747113 TACTCGTTCA
*
51747123 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAC
1 AATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCAC
* *
51747162 AGATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCAC
1 A-ATGCC-TTCGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
51747202 GAATGCCTTCGGATCTTAGTCCGGATATAGT
1 -AATGCCTTCGGA-CTTAGCCCGGATTTAGT
51747233 GTAACACCCC
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
39 6 0.10
40 48 0.81
41 5 0.08
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (38 bp):
AATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:51748639 original size:40 final size:39
Alignment explanation
Indices: 51748594--51748801 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
51748584 CGGAATACAA
*
51748594 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
51748634 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
51748674 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
51748714 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
51748754 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
51748794 CCGGATAT
1 CCGGATAT
51748802 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:51748734 original size:80 final size:81
Alignment explanation
Indices: 51748594--51748799 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
51748584 CGGAATACAA
* * *
51748594 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
51748658 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
51748674 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
51748737 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
51748754 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
51748800 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:51772374 original size:32 final size:32
Alignment explanation
Indices: 51772331--51772405 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 32
51772321 AAGGTGACGA
* * *
51772331 CACTAAATGTGTGATACGTCACAA-GACTATGG
1 CACTAAGTGTGTAATACGTCACAAGGAAT-TGG
*
51772363 CACTAAGTGTGTAATACGTTACAAGGAATTGG
1 CACTAAGTGTGTAATACGTCACAAGGAATTGG
*
51772395 CACTGAGTGTG
1 CACTAAGTGTG
51772406 CGAGTTTACA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 34 0.92
33 3 0.08
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (32 bp):
CACTAAGTGTGTAATACGTCACAAGGAATTGG
Found at i:51778212 original size:122 final size:122
Alignment explanation
Indices: 51777995--51778259 Score: 347
Period size: 122 Copynumber: 2.2 Consensus size: 122
51777985 AGGATCTTTG
* * * *
51777995 TGAGCTTCCTAATTAATGGCTCTCTGAAACTTCCCAATATGGGTCGCTTGAATTTCCTAATATAT
1 TGAGCTTCTTAATTAATGGCTCTCTCAAACTTCCCAATATGGCTCGCTTGAACTTCCTAATATAT
* * * * * *
51778060 GGCTATCTAGAGCTTCCCGATTAATGGCTCTTCGGAGCTACCCGTTATTGGCTCGCA
66 GGCTATCCAGAGCTTCCCAATTAATGGCTCTTCGGAGCTACCAGTTAATGGATCACA
* * *
51778117 TGAGCTTCTTAATTAATGGCTCTC-CAGAGTTGCCCTATATGGCTCGCTTGAACTTCCTAATATA
1 TGAGCTTCTTAATTAATGGCTCTCTCAAACTT-CCCAATATGGCTCGCTTGAACTTCCTAATATA
* * *
51778181 TGGCTATCCGGAGCTTCTCAATTAATGGCTCTTTGGAGCTACCAGTTAATGGATCACA
65 TGGCTATCCAGAGCTTCCCAATTAATGGCTCTTCGGAGCTACCAGTTAATGGATCACA
*
51778239 TGAGCTT-TTAAAT-ATGGCTCT
1 TGAGCTTCTTAATTAATGGCTCT
51778260 TATGAGCTTC
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
120 8 0.06
121 9 0.07
122 108 0.86
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (122 bp):
TGAGCTTCTTAATTAATGGCTCTCTCAAACTTCCCAATATGGCTCGCTTGAACTTCCTAATATAT
GGCTATCCAGAGCTTCCCAATTAATGGCTCTTCGGAGCTACCAGTTAATGGATCACA
Found at i:51780246 original size:28 final size:28
Alignment explanation
Indices: 51780174--51780254 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
51780164 CCCAATCTCT
*
51780174 TTCATATTGCCCATTAGGACC-AATCACA
1 TTCATA-TGCCCATTAGGCCCAAATCACA
* * *
51780202 TTTATGTGGTCCATTAGGCCCAAATCACA
1 TTCATAT-GCCCATTAGGCCCAAATCACA
*
51780231 TTCATATGCCCTTTAGGCCCAAAT
1 TTCATATGCCCATTAGGCCCAAAT
51780255 TCATTTACAG
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
27 1 0.02
28 30 0.70
29 12 0.28
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (28 bp):
TTCATATGCCCATTAGGCCCAAATCACA
Found at i:51780510 original size:24 final size:24
Alignment explanation
Indices: 51780471--51780524 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
51780461 CCGTAGCCAA
*
51780471 ACTTTT-AGCTTTTTGGCATTTTG
1 ACTTTTCAGCATTTTGGCATTTTG
*
51780494 ACTTTTCAGCATTTTGGCTTTTTG
1 ACTTTTCAGCATTTTGGCATTTTG
*
51780518 GCTTTTC
1 ACTTTTC
51780525 GGCTTTTACC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.11, C:0.17, G:0.17, T:0.56
Consensus pattern (24 bp):
ACTTTTCAGCATTTTGGCATTTTG
Found at i:51780528 original size:16 final size:16
Alignment explanation
Indices: 51780473--51780531 Score: 66
Period size: 16 Copynumber: 3.7 Consensus size: 16
51780463 GTAGCCAAAC
*
51780473 TTTTAGCTTTTTGGCA
1 TTTTGGCTTTTTGGCA
* **
51780489 TTTTGACTTTTCAGCA
1 TTTTGGCTTTTTGGCA
51780505 TTTTGGCTTTTTGGC-
1 TTTTGGCTTTTTGGCA
51780520 TTTTCGGCTTTT
1 TTTT-GGCTTTT
51780532 ACCGATCTAC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
15 4 0.11
16 31 0.89
ACGTcount: A:0.08, C:0.15, G:0.19, T:0.58
Consensus pattern (16 bp):
TTTTGGCTTTTTGGCA
Found at i:51782574 original size:41 final size:41
Alignment explanation
Indices: 51782511--51782628 Score: 139
Period size: 41 Copynumber: 2.9 Consensus size: 41
51782501 GCCACCGGTG
* * * *
51782511 GATCCACGGTCGCCAAGTAACCATGTAATCCTTAATCGATC
1 GATCCACGGTCGTCAAGCAACCATGCAATCCTCAATCGATC
* * * *
51782552 GATCAACGGTCGTCAAGCAACCATGCGATCCTCAATCGGTG
1 GATCCACGGTCGTCAAGCAACCATGCAATCCTCAATCGATC
*
51782593 GATCCACGGTTGTCAAGCAACCATG-AGATCCTCAAT
1 GATCCACGGTCGTCAAGCAACCATGCA-ATCCTCAAT
51782629 TTCTTCCTCC
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 65 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (41 bp):
GATCCACGGTCGTCAAGCAACCATGCAATCCTCAATCGATC
Found at i:51782901 original size:27 final size:27
Alignment explanation
Indices: 51782861--51782924 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
51782851 GGCAAAACAA
* * *
51782861 TCATTTTACCCTACAGGGGTATGTCGG
1 TCATTTTACACTACAAGGGTATGTCAG
*
51782888 TCATTTTACACTACAAGGGTATTTCAG
1 TCATTTTACACTACAAGGGTATGTCAG
*
51782915 TAATTTTACA
1 TCATTTTACA
51782925 AATCGAGAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.38
Consensus pattern (27 bp):
TCATTTTACACTACAAGGGTATGTCAG
Found at i:51783139 original size:80 final size:80
Alignment explanation
Indices: 51782903--51783455 Score: 584
Period size: 80 Copynumber: 6.9 Consensus size: 80
51782893 TTACACTACA
* ** *
51782903 AGGGTATTTCAGTAATTTTACAAATCGAGAGTATTTTTTGTAATTTTACAAATCGAGGGT-GTTT
1 AGGGTATTTCAGTAATTTTAC-AATCGAGGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTT
**
51782967 CGGTAATTTTAGGAATCG
64 C-GTAATTTTACAAATCG
* * ** * *
51782985 AGGGTATTTCGGTAATTTTACAAATCGAGAGTATTTTTGTAATTTTACAAATTGAGGGT-GTTTC
1 AGGGTATTTCAGTAATTTTAC-AATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTC
51783049 GGTAATTTTACAAATCG
65 -GTAATTTTACAAATCG
* * * * *
51783066 AGGGTATTTTAGTAATTTCACAATCGAGGGTATTTCAATAATTTTACAAATCGAGGATATTTTTG
1 AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTCG
51783131 TAATTTTACAAATCG
66 TAATTTTACAAATCG
* * * ** *
51783146 AGGATATTTTAGTAATTTTACACTCGAGGGTATTTTGGTAATTTTACAAATTGAGGGTA-TTTCG
1 AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTCG
*
51783210 ATAATTTCAC-AATCG
66 -TAATTTTACAAATCG
* ** * *
51783225 AGGGTGTTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCAC-AATCGAGGGTATTTTA
1 AGGGTATTTCAGTAATTTTAC-AATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTC
*
51783289 GTAATTTTACAAATCA
65 GTAATTTTACAAATCG
* * * * *
51783305 AGAGTATTTCGGTAATTTTAAAAATCGACGGTATTTCAGTAATTTCAC-AATCGAGGGTA-TTTC
1 AGGGTATTTCAGTAATTTT-ACAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTC
*
51783368 GATAATTTTACAGATCG
65 G-TAATTTTACAAATCG
* * *
51783385 AGAGTATTTCAGTAATTTCT-CAATCGAGGGTATTTCGGTAATTTTACAAAT-TAGGGGTATTTT
1 AGGGTATTTCAGTAATTT-TACAATCGAGGGTATTTCAGTAATTTTACAAATCGA-GGGTATTTT
*
51783448 GGTAATTT
64 CGTAATTT
51783456 CTCTTTATTA
Statistics
Matches: 409, Mismatches: 51, Indels: 24
0.85 0.11 0.05
Matches are distributed among these distances:
79 73 0.18
80 232 0.57
81 72 0.18
82 32 0.08
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (80 bp):
AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTCG
TAATTTTACAAATCG
Found at i:51783451 original size:27 final size:27
Alignment explanation
Indices: 51782877--51783455 Score: 609
Period size: 27 Copynumber: 21.6 Consensus size: 27
51782867 TACCCTACAG
* * * *
51782877 GGGTATGTCGGTCATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
*
51782904 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* **
51782931 GAGTATTTTTTGTAATTTTACAAATCGA
1 GGGTA-TTTCGGTAATTTTACAAATCGA
* **
51782959 GGGTGTTTCGGTAATTTTAGGAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
51782986 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* ** *
51783013 GAGTATTTTTGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
51783040 GGGTGTTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** *
51783067 GGGTATTTTAGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
**
51783093 GGGTATTTCAATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* **
51783120 GGATATTTTTGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* ** *
51783147 GGATATTTTAGTAATTTTAC-ACTCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
51783173 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
51783200 GGGTATTTCGATAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
51783226 GGGTGTTTTGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
51783253 GGGTATTTCAGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** *
51783279 GGGTATTTTAGTAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
51783306 GAGTATTTCGGTAATTTTAAAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
51783333 CGGTATTTCAGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
51783359 GGGTATTTCGATAATTTTACAGATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
51783386 GAGTATTTCAGTAATTTCT-C-AATCGA
1 GGGTATTTCGGTAATTT-TACAAATCGA
*
51783412 GGGTATTTCGGTAATTTTACAAAT-TA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
51783438 GGGGTATTTTGGTAATTT
1 -GGGTATTTCGGTAATTT
51783456 CTCTTTATTA
Statistics
Matches: 460, Mismatches: 81, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
25 1 0.00
26 135 0.29
27 298 0.65
28 26 0.06
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:51783458 original size:53 final size:54
Alignment explanation
Indices: 51782877--51783455 Score: 645
Period size: 53 Copynumber: 10.8 Consensus size: 54
51782867 TACCCTACAG
* * * * *
51782877 GGGTATGTCGGTCATTTTAC-ACTACAAGGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAAT-CGAGGGTATTTTAGTAATTTTACAAATCGA
* ** * ** **
51782931 GAGTATTTTTTGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTAGGAATCGA
1 GGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCGA
* * *
51782986 GGGTATTTCGGTAATTTTACAAATCGAGAGTATTTTTGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCGA
* *
51783040 GGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCGA
** * *
51783093 GGGTATTTCAATAATTTTACAAATCGAGGATATTTTTGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCGA
* ** * * *
51783147 GGATATTTTAGTAATTTTAC-ACTCGAGGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCGA
* * * *
51783200 GGGTATTTCGATAATTTCAC-AATCGAGGGTGTTTTGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCGA
* * *
51783253 GGGTATTTCAGTAATTTCAC-AATCGAGGGTATTTTAGTAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCGA
* * * * *
51783306 GAGTATTTCGGTAATTTTAAAAATCGACGGTATTTCAGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCGA
* * * *
51783359 GGGTATTTCGATAATTTTACAGATCGAGAGTATTTCAGTAATTTCT-C-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTT-TACAAATCGA
* *
51783412 GGGTATTTCGGTAATTTTACAAAT-TAGGGGTATTTTGGTAATTT
1 GGGTATTTCGGTAATTTTACAAATCGA-GGGTATTTTAGTAATTT
51783456 CTCTTTATTA
Statistics
Matches: 446, Mismatches: 73, Indels: 13
0.84 0.14 0.02
Matches are distributed among these distances:
52 1 0.00
53 270 0.61
54 133 0.30
55 40 0.09
56 2 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCGA
Found at i:51783678 original size:28 final size:28
Alignment explanation
Indices: 51783642--51783705 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
51783632 TGGCCGCTGT
* *
51783642 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
51783670 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
51783698 AGGCCCAA
1 AGGCCCAA
51783706 CTACTTCCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.27, C:0.38, G:0.17, T:0.19
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:51787966 original size:41 final size:41
Alignment explanation
Indices: 51787901--51788017 Score: 153
Period size: 41 Copynumber: 2.9 Consensus size: 41
51787891 CTACCAGTGG
* * **
51787901 ATCCACGGTCGTCAAGAAACCATGCGATCCTTAATCGGTCA
1 ATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCAATCA
* * **
51787942 ATGCACGATCGTCAAGCAACCATGCGATCCTCAATCAATGG
1 ATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCAATCA
*
51787983 ATCCACGGTCATCAAGCAACCATGCGATCCTCAAT
1 ATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
51788018 TTCTTCCTCC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 65 1.00
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.21
Consensus pattern (41 bp):
ATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCAATCA
Found at i:51787975 original size:19 final size:19
Alignment explanation
Indices: 51787947--51788016 Score: 50
Period size: 19 Copynumber: 3.5 Consensus size: 19
51787937 GGTCAATGCA
*
51787947 CGATCGTCAAGCAACCATG
1 CGATCCTCAAGCAACCATG
* ** *
51787966 CGATCCTCAATCAATGGATCCA
1 CGATCCTCAAGCAA-CCAT--G
* *
51787988 CGGTCATCAAGCAACCATG
1 CGATCCTCAAGCAACCATG
51788007 CGATCCTCAA
1 CGATCCTCAA
51788017 TTTCTTCCTC
Statistics
Matches: 35, Mismatches: 13, Indels: 6
0.65 0.24 0.11
Matches are distributed among these distances:
19 20 0.57
20 2 0.06
21 2 0.06
22 11 0.31
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (19 bp):
CGATCCTCAAGCAACCATG
Found at i:51788325 original size:27 final size:27
Alignment explanation
Indices: 51788251--51788339 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
51788241 CAAAACAGTC
* * * * * *
51788251 ATTTTACCCAACAGGGGTATGTCAGTC
1 ATTTTACACTACAAGGGTATTTTAGTA
51788278 ATTTTACACTACAAGGGTATTTTAGTA
1 ATTTTACACTACAAGGGTATTTTAGTA
51788305 ATTTTACACTACAAGGGTATTTT-GATA
1 ATTTTACACTACAAGGGTATTTTAG-TA
51788332 ATTTTACA
1 ATTTTACA
51788340 AATCGAGGGT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTTAGTA
Found at i:51788348 original size:27 final size:27
Alignment explanation
Indices: 51788291--51788681 Score: 316
Period size: 27 Copynumber: 14.7 Consensus size: 27
51788281 TTACACTACA
* *
51788291 AGGGTATTTT-AGTAATTTTAC-ACTACA
1 AGGGTATTTTGA-TAATTTTACAAAT-CG
51788318 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
51788345 AGGGTATTTTGATAA-TTTAAAAATTG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
51788371 AGGGTATTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGATAATTTTACAAATCG
* * *
51788398 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* * * *
51788425 ATGGTA-TTTCAGTAATTTCAC-AATGG
1 AGGGTATTTTGA-TAATTTTACAAATCG
* *
51788451 AGAGTA-TTTCAGTAATTTTACAAATCG
1 AGGGTATTTTGA-TAATTTTACAAATCG
* * *
51788478 AGGGTATTTCGGTAATTTTAAAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
** * *
51788505 AGGGTATTTCAATAATTTCAC-AATTG
1 AGGGTATTTTGATAATTTTACAAATCG
** *
51788531 AGGGTATTTCAATAATTTTACAAATTG
1 AGGGTATTTTGATAATTTTACAAATCG
* * * *
51788558 GGGGTATTTCGGTAATTTTACAAATCA
1 AGGGTATTTTGATAATTTTACAAATCG
* * * *
51788585 ATGGTA-TTTCAGTAATTTCAC-AATCA
1 AGGGTATTTTGA-TAATTTTACAAATCG
* * *
51788611 AGGGTATTTCGGTAATTTTATAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
51788638 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
*
51788665 -GGGTATTTTGGTAATTT
1 AGGGTATTTTGATAATTT
51788682 CTCTTTATTA
Statistics
Matches: 301, Mismatches: 53, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
26 106 0.35
27 190 0.63
28 5 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGATAATTTTACAAATCG
Found at i:51788386 original size:80 final size:80
Alignment explanation
Indices: 51788291--51788682 Score: 470
Period size: 80 Copynumber: 4.9 Consensus size: 80
51788281 TTACACTACA
* * * * *
51788291 AGGGTATTTTAGTAATTTTAC-ACTACAAGGGTATTTTGATAATTTTACAAATCGAGGGTATTTT
1 AGGGTATTTCAGTAATTTTACAAAT-CGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTT
* * *
51788355 GATAATTTAAAAATTG
65 CATAATTTCACAATTG
** * * *
51788371 AGGGTATTTTGGTAATTTTACAAGTCGAGGGTGTTTCGGTAATTTTACAAATCGATGGTA-TTTC
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTC
*
51788435 AGTAATTTCACAATGG
66 A-TAATTTCACAATTG
* *
51788451 AGAGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTAAAAATCGAGGGTA-TTTC
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTC
51788515 AATAATTTCACAATTG
66 -ATAATTTCACAATTG
* * * * *
51788531 AGGGTATTTCAATAATTTTACAAATTGGGGGTATTTCGGTAATTTTACAAATCAATGGTA-TTTC
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTC
**
51788595 AGTAATTTCACAATCA
66 A-TAATTTCACAATTG
* * *
51788611 AGGGTATTTCGGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTACAAATCG-GGGTATTTTG
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTC
*
51788675 GTAATTTC
66 ATAATTTC
51788683 TCTTTATTAT
Statistics
Matches: 270, Mismatches: 37, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
79 16 0.06
80 251 0.93
81 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (80 bp):
AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTC
ATAATTTCACAATTG
Found at i:51788393 original size:53 final size:54
Alignment explanation
Indices: 51788291--51788681 Score: 416
Period size: 53 Copynumber: 7.3 Consensus size: 54
51788281 TTACACTACA
** * * * *
51788291 AGGGTATTTTAGTAATTTTAC-ACTACAAGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAAT-CGAGGGTATTTCGGTAATTTTACAAATCG
* * * * * *
51788345 AGGGTATTTTGATAA-TTTAAAAATTGAGGGTATTTTGGTAATTTTACAAGTCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
* * * * *
51788398 AGGGTGTTTCGGTAATTTTACAAATCGATGGTATTTCAGTAATTTCAC-AATGG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
* * *
51788451 AGAGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTAAAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
** * * ** *
51788505 AGGGTATTTCAATAATTTCAC-AATTGAGGGTATTTCAATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
* * * * * *
51788558 GGGGTATTTCGGTAATTTTACAAATCAATGGTATTTCAGTAATTTCAC-AATCA
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
*
51788611 AGGGTATTTCGGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
*
51788665 -GGGTATTTTGGTAATTT
1 AGGGTATTTCGGTAATTT
51788682 CTCTTTATTA
Statistics
Matches: 278, Mismatches: 54, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
53 190 0.68
54 88 0.32
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
Found at i:51788496 original size:160 final size:160
Alignment explanation
Indices: 51788266--51788681 Score: 539
Period size: 160 Copynumber: 2.6 Consensus size: 160
51788256 ACCCAACAGG
* * * * * * * * * *
51788266 GGTATGTCAGTCATTTTACACTACAAGGGTATTTTAGTAATTTTAC-ACTACAAGGGTATTTTGA
1 GGTATTTCAGTAATTTCACAAT-CAAGAGTATTTCAGTAATTTTACAAAT-CGAGGGTATTTCGG
*** *
51788330 TAATTTTACAAATCGAGGGTATTTTGATAATTTAAAAATTGAGGGTATTTTGGTAATTTTACAAG
64 TAATTTTACAAATCGAGGGTATTTTGATAATTTAAAAATTGAGGGTATTTCAATAATTTTACAAA
* *
51788395 TCGAGGGTGTTTCGGTAATTTTACAAATCGAT
129 TCGAGGGTATTTCGGTAATTTTACAAATCAAT
**
51788427 GGTATTTCAGTAATTTCACAATGGAGAGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTA
1 GGTATTTCAGTAATTTCACAATCAAGAGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTA
* ** * * *
51788492 ATTTTAAAAATCGAGGGTATTTCAATAATTTCACAATTGAGGGTATTTCAATAATTTTACAAATT
66 ATTTTACAAATCGAGGGTATTTTGATAATTTAAAAATTGAGGGTATTTCAATAATTTTACAAATC
*
51788557 GGGGGTATTTCGGTAATTTTACAAATCAAT
131 GAGGGTATTTCGGTAATTTTACAAATCAAT
* * *
51788587 GGTATTTCAGTAATTTCACAATCAAGGGTATTTCGGTAATTTTATAAATCGAGGGTATTTCGGTA
1 GGTATTTCAGTAATTTCACAATCAAGAGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTA
*
51788652 ATTTTACAAATCG-GGGTATTTTGGTAATTT
66 ATTTTACAAATCGAGGGTATTTTGATAATTT
51788682 CTCTTTATTA
Statistics
Matches: 220, Mismatches: 34, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
159 14 0.06
160 186 0.85
161 20 0.09
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (160 bp):
GGTATTTCAGTAATTTCACAATCAAGAGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTA
ATTTTACAAATCGAGGGTATTTTGATAATTTAAAAATTGAGGGTATTTCAATAATTTTACAAATC
GAGGGTATTTCGGTAATTTTACAAATCAAT
Found at i:51791357 original size:18 final size:18
Alignment explanation
Indices: 51791333--51791373 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
51791323 TCTAGTTATT
*
51791333 ATTATTATTTTTAAGTTTC
1 ATTATTATTCTTAA-TTTC
51791352 -TTATTATTCTTAATTTC
1 ATTATTATTCTTAATTTC
51791369 ATTAT
1 ATTAT
51791374 GTCTATTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.63
Consensus pattern (18 bp):
ATTATTATTCTTAATTTC
Found at i:51798038 original size:40 final size:40
Alignment explanation
Indices: 51797993--51798160 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
51797983 CGGAATATAA
51797993 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
51798033 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
51798073 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
51798113 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
51798153 CCGGATAT
1 CCGGATAT
51798161 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51798143 original size:80 final size:80
Alignment explanation
Indices: 51798009--51798158 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
51797999 ATAACCACGT
* *
51798009 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
51798074 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
51798089 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
51798152 CCCGGAT
64 CCCGGAT
51798159 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:51802803 original size:18 final size:18
Alignment explanation
Indices: 51802780--51802815 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
51802770 TTCAGGTGTC
*
51802780 ACACGCCCGTGTGAACAG
1 ACACGCCCATGTGAACAG
51802798 ACACGCCCATGTGAACAG
1 ACACGCCCATGTGAACAG
51802816 GCTGTGTGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.11
Consensus pattern (18 bp):
ACACGCCCATGTGAACAG
Found at i:51804183 original size:43 final size:44
Alignment explanation
Indices: 51804104--51804216 Score: 140
Period size: 43 Copynumber: 2.6 Consensus size: 44
51804094 TAAAGCCATA
* * * * *
51804104 TCCCAGATATGGTCTTACATGTCATC-ACATATCGATGCCACTG
1 TCCCAGACAGGGTCTTACATGTAATCGACATAACGATGCCAATG
* *
51804147 TCCCGGACAGGGTCTTACATGAAATCGA-ATAACGATGCCAATG
1 TCCCAGACAGGGTCTTACATGTAATCGACATAACGATGCCAATG
*
51804190 TCCCAGACATGGTCTTACATGTAATCG
1 TCCCAGACAGGGTCTTACATGTAATCG
51804217 CATCTCGGTA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 58 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (44 bp):
TCCCAGACAGGGTCTTACATGTAATCGACATAACGATGCCAATG
Found at i:51819096 original size:43 final size:43
Alignment explanation
Indices: 51819020--51819110 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
51819010 TATCCTAGAT
**
51819020 ATGGTCTTACATGTTATCACATATCGATACCAATGTCCCAGAC
1 ATGGTCTTACATGAAATCACATATCGATACCAATGTCCCAGAC
* *
51819063 ATGGTCTTACATGAAATCATATAAT-GATGCCAATGTCCCAGAC
1 ATGGTCTTACATGAAATCACAT-ATCGATACCAATGTCCCAGAC
51819106 ATGGT
1 ATGGT
51819111 GTGACAGCCC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 41 0.95
44 2 0.05
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACATGAAATCACATATCGATACCAATGTCCCAGAC
Found at i:51820969 original size:40 final size:39
Alignment explanation
Indices: 51820879--51821063 Score: 205
Period size: 40 Copynumber: 4.7 Consensus size: 39
51820869 TCGAATGATG
* * *
51820879 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
51820919 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
51820958 TCCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* * *
51820998 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
51821038 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51821064 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 82 0.66
41 8 0.06
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:51821085 original size:79 final size:79
Alignment explanation
Indices: 51820932--51821096 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
51820922 GGACTAAGAT
* * **
51820932 CCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGCTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
51820997 ATCCGAGTTAAGTC
66 ATCCGAGTTAAATC
* *
51821011 CCGAAGGCATTTGTGCGAGCTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGCTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
51821074 TATATCC-AGTTAAATT
63 TAAATCCGAGTTAAATC
51821090 CCGAAGG
1 CCGAAGG
51821097 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGCTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGAGTTAAATC
Found at i:51826071 original size:40 final size:40
Alignment explanation
Indices: 51826018--51826249 Score: 294
Period size: 40 Copynumber: 5.8 Consensus size: 40
51826008 GGATATAGCT
* *
51826018 ACTCGCTCGAATGCCTTCGGGACTTAGCCCAG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAAT-TAGTA
** *
51826058 GTTCGCACAAATGCCTTCGGGACTTAGCCC-GGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAAT-TAGTA
* *
51826098 ACTCGCACAAATGCCTTTGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTA
51826138 ACTCGCA-ACAATGCCTTCGGGACTTAGCCCAGAATTAGTA
1 ACTCGCACA-AATGCCTTCGGGACTTAGCCCAGAATTAGTA
* *
51826178 ACTCGCA-ACAATGCCTTCGGGACCTAGCCC-GAAATTAGTC
1 ACTCGCACA-AATGCCTTCGGGACTTAGCCCAG-AATTAGTA
*
51826218 ACTAGCACAAATGCCTTCGGGACTTAGCCCAG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAG
51826250 TTATCATCCG
Statistics
Matches: 172, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
39 3 0.02
40 164 0.95
41 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTA
Found at i:51826144 original size:80 final size:80
Alignment explanation
Indices: 51825992--51826247 Score: 308
Period size: 80 Copynumber: 3.2 Consensus size: 80
51825982 AAACCAAGTA
* * * * *
51825992 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACTTAGCCCAG-ATAT
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-T
**
51826054 AGTAGTTCGCACAAATG
64 AGTAACTCGCACAAATG
*
51826071 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
51826136 TAACTCGCA-ACAATG
66 TAACTCGCACA-AATG
* * *
51826151 CCTTCGGGACTTAGCCCAGA-ATTAGTAACTCGCA-ACAATGCCTTCGGGACCTAGCCCGAAATT
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA-AATGCCTTCGGGACTTAGCCCGGAATT
* *
51826214 AGTCACTAGCACAAATG
64 AGTAACTCGCACAAATG
51826231 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
51826248 AGTTATCATC
Statistics
Matches: 156, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
79 16 0.10
80 137 0.88
81 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
TAACTCGCACAAATG
Found at i:51826226 original size:120 final size:120
Alignment explanation
Indices: 51826027--51826247 Score: 331
Period size: 120 Copynumber: 1.8 Consensus size: 120
51826017 TACTCGCTCG
** * *
51826027 AATGCCTTCGGGACTTAGCCCAGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACCTAGCCCGAAT
* *
51826092 ATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAATTAGTAACTCGCAAC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAAC
51826147 AATGCCTTCGGGACTTAGCCCAGA-ATTAGTAACTCGCA-ACAATGCCTTCGGGACCTAGCCCGA
1 AATGCCTTCGGGACTTAGCCCAGATA-TAGTAACTCGCACA-AATGCCTTCGGGACCTAGCCCGA
*
51826210 A-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
64 ATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
51826248 AGTTATCATC
Statistics
Matches: 91, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
119 3 0.03
120 88 0.97
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (120 bp):
AATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACCTAGCCCGAAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAAC
Found at i:51828176 original size:47 final size:47
Alignment explanation
Indices: 51828119--51828240 Score: 192
Period size: 47 Copynumber: 2.6 Consensus size: 47
51828109 GCATTGGCAC
* *
51828119 TAAGACAAGGATACTATGTAATACCATGTTTGGAACATGGTATTTGG
1 TAAGACAAGGATACTATGTAAGACCATGTTTGGAACATGGCATTTGG
*
51828166 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACTATGTAAGACCATGTTTGGAACATGGCATTTGG
*
51828213 TAAGATAAGGATA-TCATGTAAGACCATG
1 TAAGACAAGGATACT-ATGTAAGACCATG
51828241 CCAAGGCATG
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (47 bp):
TAAGACAAGGATACTATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:51828348 original size:55 final size:54
Alignment explanation
Indices: 51828219--51828415 Score: 229
Period size: 55 Copynumber: 3.6 Consensus size: 54
51828209 TTGGTAAGAT
* * *
51828219 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATG-GATTCTATCAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAG-TTCTATAAGGC
* * * *
51828273 AAGGAAATCATGTAAGACCATGTCAAGACATGGAATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
51828328 AAAGG-TCCCATGTAAGACCATACCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
51828381 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
51828416 ATGGTAGGTT
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 40 0.33
55 41 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:51832506 original size:40 final size:40
Alignment explanation
Indices: 51832462--51832640 Score: 187
Period size: 40 Copynumber: 4.5 Consensus size: 40
51832452 GCTCGATTGT
* * * *
51832462 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAATTCGCACAAATGC
* * * *
51832502 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAATTCGCACAAATGC
* * * *
51832542 CTTCGGGACTTAACCCGGTTTTGGTAAATCACACAAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAATTCGCACAAATGC
* * * * * *
51832582 CTTCGGGACTTAACCTGGTTTTGGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGTTTTAGT-AATTCGCACAAATGC
51832623 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
51832641 ACACCATTCG
Statistics
Matches: 115, Mismatches: 23, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
40 89 0.77
41 26 0.23
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGTTTTAGTAATTCGCACAAATGC
Found at i:51832560 original size:80 final size:80
Alignment explanation
Indices: 51832422--51832640 Score: 199
Period size: 80 Copynumber: 2.7 Consensus size: 80
51832412 GAATCACGTA
* ** * * * *
51832422 CCTTC-GGAATTTAA-CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATA
1 CCTTCGGGAA-TTAACCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATA
* * * *
51832485 GTGATTCGCACAATTG
65 GTAAATCACACAAATG
* * * *
51832501 CCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGG
1 CCTTCGGGAATTAACCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAG
51832566 TAAATCACACAAATG
66 TAAATCACACAAATG
* * * * * * * *
51832581 CCTTCGGGACTTAACCTGGTTTTGGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGAATTAACCCGGATTTAGTAAC-TCGCACGAATGCCTTCGGGACTTAGCCCGG
51832641 ACACCATTCG
Statistics
Matches: 112, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
79 8 0.07
80 78 0.70
81 26 0.23
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (80 bp):
CCTTCGGGAATTAACCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAG
TAAATCACACAAATG
Found at i:51840487 original size:40 final size:40
Alignment explanation
Indices: 51840432--51840595 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
51840422 TGAATGATAC
* * *
51840432 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
51840472 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * * *
51840512 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
51840552 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
51840592 CCGG
1 CCGG
51840596 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 97 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:51840565 original size:80 final size:80
Alignment explanation
Indices: 51840432--51840609 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 80
51840422 TGAATGATAC
* * * * * *
51840432 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATT-
*
51840496 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
51840512 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
**
51840577 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
51840592 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
51840610 TACGTGACTC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 14 0.17
80 66 0.79
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:51848610 original size:40 final size:40
Alignment explanation
Indices: 51848555--51848718 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
51848545 TGAATGATAC
* * *
51848555 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
51848595 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * * *
51848635 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
51848675 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
51848715 CCGG
1 CCGG
51848719 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 97 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:51848688 original size:80 final size:80
Alignment explanation
Indices: 51848555--51848732 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 80
51848545 TGAATGATAC
* * * * * *
51848555 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATT-
*
51848619 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
51848635 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
**
51848700 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
51848715 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
51848733 TACGTGACTC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 14 0.17
80 66 0.79
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:51854074 original size:41 final size:42
Alignment explanation
Indices: 51853974--51854074 Score: 168
Period size: 41 Copynumber: 2.4 Consensus size: 42
51853964 CCCCAAAATG
*
51853974 TCACACGGCCAAGACACACACCCGTGTGCTAGGCCGTGCCCT
1 TCACACGGCTAAGACACACACCCGTGTGCTAGGCCGTGCCCT
*
51854016 TCACACGGCTAAAACACACA-CCGTGTGCTAGGCCGTGCCCT
1 TCACACGGCTAAGACACACACCCGTGTGCTAGGCCGTGCCCT
*
51854057 TCACACGGCTGAGACACA
1 TCACACGGCTAAGACACA
51854075 TGGCTATGTC
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
41 37 0.67
42 18 0.33
ACGTcount: A:0.25, C:0.38, G:0.23, T:0.15
Consensus pattern (42 bp):
TCACACGGCTAAGACACACACCCGTGTGCTAGGCCGTGCCCT
Found at i:51855794 original size:28 final size:29
Alignment explanation
Indices: 51855727--51855827 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
51855717 ATAGTGAATC
*
51855727 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
51855756 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
51855784 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
51855814 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51855828 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:51863594 original size:28 final size:29
Alignment explanation
Indices: 51863527--51863627 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
51863517 ATAGTGAATC
*
51863527 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
51863556 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
51863584 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
51863614 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51863628 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:51871396 original size:28 final size:29
Alignment explanation
Indices: 51871329--51871428 Score: 123
Period size: 28 Copynumber: 3.4 Consensus size: 29
51871319 ATAGTGAATC
*
51871329 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
51871358 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
51871386 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
51871416 CGCACACTTAGTG
1 CGCACACTTAGTG
51871429 TCGAGACCAA
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 20 0.32
30 18 0.29
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:51876172 original size:46 final size:46
Alignment explanation
Indices: 51876105--51876276 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
51876095 TGTAACCCGC
* * * *
51876105 CCATAAGTGAACTCGGCCTCAACTCAATGAGCTCGGGCATTCTCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
51876151 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCACAT
* * * * * * *
51876201 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
51876244 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
51876277 TGGATGCCCA
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 57 0.55
47 26 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
Found at i:51877363 original size:41 final size:41
Alignment explanation
Indices: 51877303--51877394 Score: 159
Period size: 41 Copynumber: 2.3 Consensus size: 41
51877293 TGAGATACCG
* *
51877303 ACCTTTTCA-TTGATATCCTTTTCGGATAACATCTTTTTCA
1 ACCTTTTCATTTGATATCCTTTTCAGATAACATCCTTTTCA
51877343 ACCTTTTCATTTGATATCCTTTTCAGATAACATCCTTTTCA
1 ACCTTTTCATTTGATATCCTTTTCAGATAACATCCTTTTCA
51877384 ACCTTTTCATT
1 ACCTTTTCATT
51877395 GATTCAGAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
40 9 0.18
41 40 0.82
ACGTcount: A:0.23, C:0.24, G:0.05, T:0.48
Consensus pattern (41 bp):
ACCTTTTCATTTGATATCCTTTTCAGATAACATCCTTTTCA
Found at i:51880318 original size:27 final size:27
Alignment explanation
Indices: 51880288--51880341 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
51880278 GGGGCAAAAC
51880288 AGTCAATTTACCATGTAGGGGCATTTT
1 AGTCAATTTACCATGTAGGGGCATTTT
* * *
51880315 AGTCATTTTACCATGTATGGGTATTTT
1 AGTCAATTTACCATGTAGGGGCATTTT
51880342 TATAATTTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (27 bp):
AGTCAATTTACCATGTAGGGGCATTTT
Found at i:51880349 original size:27 final size:27
Alignment explanation
Indices: 51880294--51880349 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
51880284 AAACAGTCAA
*
51880294 TTTACCATGTAGGGGCATTTTAGTCAT
1 TTTACCATGTAGGGGCATTTTAGTAAT
* *
51880321 TTTACCATGTATGGGTATTTTTA-TAAT
1 TTTACCATGTAGGGGCA-TTTTAGTAAT
51880348 TT
1 TT
51880350 CACAAATTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (27 bp):
TTTACCATGTAGGGGCATTTTAGTAAT
Found at i:51880390 original size:27 final size:26
Alignment explanation
Indices: 51880359--51880464 Score: 105
Period size: 26 Copynumber: 4.2 Consensus size: 26
51880349 TCACAAATTG
* *
51880359 AGGGTATTTTGGTAATTTTGCATTAC
1 AGGGTATTTCGGTAATTTTGCACTAC
**
51880385 AGGGGTATTTCGAAAATTTTGCACTAC
1 A-GGGTATTTCGGTAATTTTGCACTAC
51880412 AGGGTATTTCGGTAATTTTG---TA-
1 AGGGTATTTCGGTAATTTTGCACTAC
* *
51880434 GGGGTATTT-AGTAATTTTGCACTAC
1 AGGGTATTTCGGTAATTTTGCACTAC
51880459 AAGGGT
1 -AGGGT
51880465 CCTAACGACC
Statistics
Matches: 65, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
21 9 0.14
22 8 0.12
23 2 0.03
24 2 0.03
26 22 0.34
27 22 0.34
ACGTcount: A:0.25, C:0.09, G:0.25, T:0.40
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTGCACTAC
Found at i:51887330 original size:27 final size:27
Alignment explanation
Indices: 51887220--51887329 Score: 139
Period size: 27 Copynumber: 4.1 Consensus size: 27
51887210 CACAAATCGA
* * * *
51887220 GGGTATTTTGGAAATTTTGCGCTACGG
1 GGGTATTTCGGTAATTTTGCACTACAG
*
51887247 GGGTATTTCGGTAATTTTACACTACAG
1 GGGTATTTCGGTAATTTTGCACTACAG
*
51887274 GGGTATTTCGGTAATTTTGTACTACAG
1 GGGTATTTCGGTAATTTTGCACTACAG
* * *
51887301 GGTTATTTCTGTAATTTTGCATTACAG
1 GGGTATTTCGGTAATTTTGCACTACAG
51887328 GG
1 GG
51887330 TCCTAATGAC
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.22, C:0.12, G:0.26, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTGCACTACAG
Found at i:51887816 original size:17 final size:18
Alignment explanation
Indices: 51887794--51887827 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51887784 CACATTGAAG
51887794 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
51887811 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
51887828 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Done.