Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 197 of 427
Found at i:54852394 original size:123 final size:123
Alignment explanation
Indices: 54852175--54852513 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
54852165 GAATTATGTG
54852175 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
54852240 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
54852298 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
54852363 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
** * * * *
54852421 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
54852486 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
54852514 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:54852679 original size:40 final size:40
Alignment explanation
Indices: 54852482--54852685 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 40
54852472 TGAATGATAC
* * * * **
54852482 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * * **
54852522 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
54852562 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
54852602 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * **
54852642 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
54852682 CCGG
1 CCGG
54852686 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
Found at i:54859729 original size:122 final size:123
Alignment explanation
Indices: 54859484--54859821 Score: 588
Period size: 122 Copynumber: 2.8 Consensus size: 123
54859474 GAATTATGTG
54859484 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
54859549 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
54859607 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTA-CCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
54859671 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
** * * * *
54859729 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
54859794 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
54859822 AATTATATCC
Statistics
Matches: 205, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
122 115 0.56
123 90 0.44
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:54859859 original size:40 final size:40
Alignment explanation
Indices: 54859790--54860034 Score: 287
Period size: 40 Copynumber: 6.1 Consensus size: 40
54859780 TGAATGATAC
* * * **
54859790 CCGGGCTAAGT-CCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAA-TACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * * * *
54859830 CCGGGTTAAGACCTGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG-TTATAT
54859870 CCTGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CC-GGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
54859911 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
54859951 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * ** *
54859991 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
54860031 CCGG
1 CCGG
54860035 TTGTATTCCG
Statistics
Matches: 179, Mismatches: 22, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
40 146 0.82
41 31 0.17
42 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:54859929 original size:81 final size:80
Alignment explanation
Indices: 54859790--54860011 Score: 286
Period size: 81 Copynumber: 2.8 Consensus size: 80
54859780 TGAATGATAC
* * * * * *
54859790 CCGGGCTAAGT-CCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCTGAAGGCAATT
1 CCGGGCTAA-TACCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATT
*
54859854 GTGCTAG-TGACTATAT
65 GTGCAAGTTG-CTATAT
* * *
54859870 CCTGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGGCTAATACCCGAAGGCATTT
1 CC-GGGCTAATACCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATT
*
54859935 GTGCAAGTTGTTATAT
65 GTGCAAGTTGCTATAT
* *
54859951 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATATCCGGGCTAAGACCCGAGGGCA
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
54860012 TTCGTGCGTG
Statistics
Matches: 125, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
80 59 0.47
81 64 0.51
82 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (80 bp):
CCGGGCTAATACCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTG
TGCAAGTTGCTATAT
Found at i:54865307 original size:35 final size:35
Alignment explanation
Indices: 54865222--54865289 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
54865212 ATCTTTCAAG
* *
54865222 GTGTCACCCTGAAA-GACCTATATACCGTTTACACT
1 GTGTCA-CCTCAAAGGACCTATATACCATTTACACT
54865257 GTGTCACCTCAAAGGACCTATATACCATTTACA
1 GTGTCACCTCAAAGGACCTATATACCATTTACA
54865290 TGGTGTTTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 6 0.20
35 24 0.80
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (35 bp):
GTGTCACCTCAAAGGACCTATATACCATTTACACT
Found at i:54876292 original size:42 final size:42
Alignment explanation
Indices: 54876239--54876496 Score: 274
Period size: 42 Copynumber: 6.2 Consensus size: 42
54876229 GAGATTTACG
* * *
54876239 TGTATGACCATGTCTAGGACATCGGCATCATATTTGATTTCA
1 TGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTCA
* *
54876281 TGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTCG
1 TGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTCA
* ** * *
54876323 TGTAAGACCATGTTTAAGACATCGGCATCATATCTAATTTCG
1 TGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTCA
* * ** *
54876365 TGTAAGACGATGTCTGGGACATCGACATTGTATCTG----CG
1 TGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTCA
* *
54876403 TGTAAGACCATGTCTGGGACATCGGCATCGTATCTAATTTCA
1 TGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTCA
* ** *
54876445 TGTAAGACCCTGTCTGGGACAGAGGCATCGATA-CTGAATTACA
1 TGTAAGACCATGTCTGGGACATCGGCATC-ATATCTG-ATTTCA
54876488 TGTAAGACC
1 TGTAAGACC
54876497 TCATCTAGAA
Statistics
Matches: 181, Mismatches: 29, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
38 34 0.19
42 131 0.72
43 16 0.09
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATCGGCATCATATCTGATTTCA
Found at i:54876344 original size:84 final size:84
Alignment explanation
Indices: 54876231--54876496 Score: 326
Period size: 84 Copynumber: 3.2 Consensus size: 84
54876221 CCCAATTTGA
* * *
54876231 GATTTACGTGTATGACCATGTCTAGGACATCGGCATCATATTTGATTTCATGTAAGACCATGTCT
1 GATTT-CGTGTAAGACCATGTCTAGGACATCGGCATCATATCTAATTTCATGTAAGACCATGTCT
54876296 GGGACATCGGCATCGTATCT
65 GGGACATCGGCATCGTATCT
* * * *
54876316 GATTTCGTGTAAGACCATGTTTAAGACATCGGCATCATATCTAATTTCGTGTAAGACGATGTCTG
1 GATTTCGTGTAAGACCATGTCTAGGACATCGGCATCATATCTAATTTCATGTAAGACCATGTCTG
* *
54876381 GGACATCGACATTGTATCT
66 GGACATCGGCATCGTATCT
* * *
54876400 G----CGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTAATTTCATGTAAGACCCTGTCTG
1 GATTTCGTGTAAGACCATGTCTAGGACATCGGCATCATATCTAATTTCATGTAAGACCATGTCTG
**
54876461 GGACAGAGGCATCG-ATACT
66 GGACATCGGCATCGTAT-CT
* *
54876480 GAATTACATGTAAGACC
1 G-ATTTCGTGTAAGACC
54876497 TCATCTAGAA
Statistics
Matches: 154, Mismatches: 21, Indels: 12
0.82 0.11 0.06
Matches are distributed among these distances:
79 2 0.01
80 66 0.43
84 71 0.46
85 15 0.10
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (84 bp):
GATTTCGTGTAAGACCATGTCTAGGACATCGGCATCATATCTAATTTCATGTAAGACCATGTCTG
GGACATCGGCATCGTATCT
Found at i:54881988 original size:47 final size:47
Alignment explanation
Indices: 54881937--54882184 Score: 388
Period size: 47 Copynumber: 5.3 Consensus size: 47
54881927 CCCTTCGGGA
* * *
54881937 CTTATCACATTTTTACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
54881984 CTTATCACATAAATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
54882031 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* **
54882078 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCGCTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
54882125 CCTATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
54882172 CTTATCACATATA
1 CTTATCACATATA
54882185 CATATCTTGT
Statistics
Matches: 181, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 181 1.00
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:54885199 original size:40 final size:40
Alignment explanation
Indices: 54885144--54885367 Score: 315
Period size: 40 Copynumber: 5.5 Consensus size: 40
54885134 TATTCGGATG
54885144 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
54885184 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAGGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCA---AGTTACT
* * *
54885227 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
54885267 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
54885307 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
54885347 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
54885368 ATACTTGGGT
Statistics
Matches: 167, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 13 0.08
40 117 0.70
43 37 0.22
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:54885287 original size:83 final size:80
Alignment explanation
Indices: 54885148--54885367 Score: 311
Period size: 83 Copynumber: 2.7 Consensus size: 80
54885138 CGGATGATAT
* *
54885148 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTA
54885213 TGCAGGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
54885231 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTA
*
54885296 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
54885311 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
54885368 ATACTTGGGT
Statistics
Matches: 128, Mismatches: 7, Indels: 8
0.90 0.05 0.06
Matches are distributed among these distances:
79 16 0.12
80 45 0.35
81 2 0.02
83 65 0.51
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTA
TGCTAGTGACTATAC
Found at i:54887588 original size:27 final size:28
Alignment explanation
Indices: 54887532--54887601 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
54887522 AAATTTGTAC
54887532 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
54887560 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
54887587 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
54887602 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:54887612 original size:27 final size:27
Alignment explanation
Indices: 54887532--54887613 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
54887522 AAATTTGTAC
* *
54887532 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
54887560 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
54887587 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
54887614 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:54891975 original size:39 final size:39
Alignment explanation
Indices: 54891857--54892039 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
54891847 TCGTTCAAAC
* * ** * **
54891857 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
54891897 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* *
54891937 GCCTTCGGGCTTAGCCCGGATATCATAACTCACCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
54891976 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
54892015 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
54892040 CTCGAACATT
Statistics
Matches: 124, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 86 0.69
40 38 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:54905451 original size:40 final size:40
Alignment explanation
Indices: 54905398--54905565 Score: 268
Period size: 40 Copynumber: 4.2 Consensus size: 40
54905388 ATATATTGTA
*
54905398 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTAGTAATG
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
*
54905438 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTATTG
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
*
54905478 TATATCCGGGTCAAATCCCACAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
* * *
54905518 TATATCCGGGTTAAATCTCGCAGGCTTAGTGCTGGT-AT-
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
54905556 TATATCCGGG
1 TATATCCGGG
54905566 CTTAAAGTTC
Statistics
Matches: 120, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 10 0.08
39 2 0.02
40 108 0.90
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (40 bp):
TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
Found at i:54911198 original size:71 final size:71
Alignment explanation
Indices: 54911114--54911277 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
54911104 CCGATTTGTT
54911114 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
54911179 CTTTCA
66 CTTTCA
* *
54911185 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
54911250 CTTTCA
66 CTTTCA
54911256 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
54911278 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:54911315 original size:71 final size:70
Alignment explanation
Indices: 54911114--54911311 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
54911104 CCGATTTGTT
* * * * *
54911114 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
54911179 CTTTCA
65 CTTTCA
* * * *
54911185 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
54911250 CTTTCA
65 CTTTCA
* *
54911256 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
54911312 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:54913749 original size:48 final size:48
Alignment explanation
Indices: 54913684--54914176 Score: 731
Period size: 48 Copynumber: 10.1 Consensus size: 48
54913674 GCTGAAATTG
* *
54913684 ATGTATAAGACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
54913732 ATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAATGCGAAATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-AT
* * *
54913784 ATATATGAGATATGTATATGTGGTAAAACTGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
*
54913834 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* **
54913882 ATGTATGAGATATGTATATATGGTAAAGTTGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
*
54913932 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
**
54913980 ATGTATGAGATATGTATATGTGGTAAAGTTGAATGG-TCAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAAT
54914028 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
54914076 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
54914124 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
54914172 ATGTA
1 ATGTA
54914177 GGCGATGTGC
Statistics
Matches: 410, Mismatches: 23, Indels: 24
0.90 0.05 0.05
Matches are distributed among these distances:
47 2 0.00
48 269 0.66
49 7 0.02
50 85 0.21
51 6 0.01
52 41 0.10
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:54914373 original size:37 final size:37
Alignment explanation
Indices: 54914323--54914509 Score: 320
Period size: 37 Copynumber: 5.1 Consensus size: 37
54914313 GGAAATATAT
54914323 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
54914360 TCCGGGGAAGACCCGATGACTACGTATGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
54914397 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
54914434 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
54914471 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
54914508 TC
1 TC
54914510 TGAGCTAAAG
Statistics
Matches: 143, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 143 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:54915765 original size:40 final size:40
Alignment explanation
Indices: 54915720--54916365 Score: 770
Period size: 40 Copynumber: 16.1 Consensus size: 40
54915710 AAGTTCATTA
* *
54915720 TGATGTATTCAGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
54915760 TGATGTATCCGGACTAAGCCCCGATGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
54915800 TGATGTATCCGGGTTAAGTCCCGAAGAGCATACGTGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * * *
54915840 TGTTATATCTGGGCTAAGTCTCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
54915880 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
*
54915920 TGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * * *
54915960 TGATGTATCCGAGTTAAGTCCCGAAGAGCATACGTGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * * * *
54916000 TGTTATATCCGGGCTAAGTCTCAAAGAGCATTCGTGATAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * * * *
54916040 AGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * * * *
54916080 AGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
*
54916120 TGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
54916160 TGATGTATCCGGGTTAAGTCCCGAAGAGCATACGTGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
54916200 TGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * * * * *
54916240 AGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTACTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * * * * *
54916280 AGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGTACTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * * * *
54916320 TGTTATATCCGGGCTGAGTCCCGAAGAGCATTCATGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
54916360 TGATGT
1 TGATGT
54916366 GTATTCGGGC
Statistics
Matches: 527, Mismatches: 79, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 527 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
Found at i:54916063 original size:200 final size:199
Alignment explanation
Indices: 54915720--54916365 Score: 977
Period size: 200 Copynumber: 3.2 Consensus size: 199
54915710 AAGTTCATTA
* * * * *
54915720 TGATGTATTCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGCCCCGAT
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG-TTAAGTCCCGAA
* * * * * * * * * *
54915785 GAGCATTCGTGCTAGTGATGTATCCGGGTTAAGTCCCGAAGAGCATACGTGCTGGTGTTATATCT
65 GAGCATACGTGCTGGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGAGTTATATCC
* * * * * *
54915850 GGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCAT
130 GGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGT
54915915 GCTAG
195 GCTAG
*
54915920 TGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGAGTTAAGTCCCGAA
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCG-GTTAAGTCCCGAA
* *
54915985 GAGCATACGTGCTGGTGTTATATCCGGGCTAAGTCTCAAAGAGCATTCGTGATAGAGTTATATCC
65 GAGCATACGTGCTGGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGAGTTATATCC
54916050 GGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGT
130 GGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGT
54916115 GCTAG
195 GCTAG
*
54916120 TGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGTTAAGTCCCGAA
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC-GGTTAAGTCCCGAA
54916185 GAGCATACGTGCTGGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGAGTTATATCC
65 GAGCATACGTGCTGGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGAGTTATATCC
*
54916250 GGGCTAAGTCTCGAAGAGCATTCGTACTGGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGT
130 GGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGT
*
54916315 ACTAG
195 GCTAG
* * * * *
54916320 TGTTATATCCGGGCTGAGTCCCGAAGAGCATTCATGCTGGTGATGT
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
54916366 GTATTCGGGC
Statistics
Matches: 410, Mismatches: 34, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
200 408 1.00
201 2 0.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (199 bp):
TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGTTAAGTCCCGAAG
AGCATACGTGCTGGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGAGTTATATCCG
GGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGTG
CTAG
Found at i:54919831 original size:48 final size:48
Alignment explanation
Indices: 54919766--54920304 Score: 841
Period size: 48 Copynumber: 11.1 Consensus size: 48
54919756 GCTGAAATTG
* *
54919766 ATGTATAAGACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
54919814 ATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
54919862 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-AT
*
54919914 ATATATGAGATATGTATATGTGGTAAAGCCGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* *
54919964 ATATATGAGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
54920012 ATGTATGAGATATGTATATATGGTAAAGCTGAATGG-TCAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAAT
*
54920060 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
54920108 ATGTATGAGATATGTATATGTGGTAAAGCTGAATGG-TCAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAAT
* *
54920156 ATATATGAGATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
54920204 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
54920252 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGACTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
54920300 ATGTA
1 ATGTA
54920305 GGCGATGTGC
Statistics
Matches: 459, Mismatches: 22, Indels: 20
0.92 0.04 0.04
Matches are distributed among these distances:
47 2 0.00
48 360 0.78
49 4 0.01
50 46 0.10
51 5 0.01
52 42 0.09
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:54920501 original size:37 final size:37
Alignment explanation
Indices: 54920451--54920600 Score: 255
Period size: 37 Copynumber: 4.1 Consensus size: 37
54920441 GGAAATATAT
54920451 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
54920488 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
54920525 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
54920562 TCCGGGTAAGACCCGATAACTTCGTGTGGACATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
54920599 TC
1 TC
54920601 TGAGCTAAGG
Statistics
Matches: 109, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 109 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:54922774 original size:38 final size:35
Alignment explanation
Indices: 54922713--54922813 Score: 120
Period size: 31 Copynumber: 2.9 Consensus size: 35
54922703 TCAATCATGC
*
54922713 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
*
54922752 ACTGGGCCGAAGCATTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
54922783 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
54922814 ACTGGGCCAA
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
31 26 0.47
33 3 0.05
34 1 0.02
36 1 0.02
38 13 0.24
39 11 0.20
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.40
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:54922827 original size:31 final size:31
Alignment explanation
Indices: 54922736--54922830 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
54922726 CCTTTTCATA
* *
54922736 TTTCATATTTCATAATACTGGGCCGAAGCAT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
54922767 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
*
54922798 TTTCATATTTCATATTACTGGGCCAAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
54922829 TT
1 TT
54922831 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:54923073 original size:24 final size:24
Alignment explanation
Indices: 54923022--54923164 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
54923012 GCTTTATCAT
*
54923022 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
54923047 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
54923071 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
54923094 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
54923118 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
54923142 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
54923165 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:54923101 original size:47 final size:48
Alignment explanation
Indices: 54923022--54923163 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
54923012 GCTTTATCAT
* *
54923022 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
54923071 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
54923118 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
54923164 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:54923122 original size:71 final size:72
Alignment explanation
Indices: 54923021--54923164 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
54923011 TGCTTTATCA
*
54923021 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
54923086 GCCCTTT
66 GCCCTTT
* * **
54923093 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
54923156 AGCCCTTT
65 AGCCCTTT
54923164 T
1 T
54923165 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:54923239 original size:20 final size:20
Alignment explanation
Indices: 54923214--54923274 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
54923204 TTATGATTAC
54923214 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
54923234 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
54923254 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
54923274 A
1 A
54923275 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:54923349 original size:25 final size:25
Alignment explanation
Indices: 54923317--54923364 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
54923307 ATACATAAAC
* *
54923317 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
54923342 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
54923365 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:54924583 original size:27 final size:27
Alignment explanation
Indices: 54924521--54924585 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
54924511 GGGCATATTC
54924521 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
54924548 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
54924575 GTCTTTTTACC
1 GTCATTTTACC
54924586 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:54924669 original size:27 final size:26
Alignment explanation
Indices: 54924639--54924694 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
54924629 GTAAATCAAC
*
54924639 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
54924666 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
54924692 AAA
1 AAA
54924695 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:54924735 original size:27 final size:27
Alignment explanation
Indices: 54924647--54924785 Score: 95
Period size: 27 Copynumber: 5.0 Consensus size: 27
54924637 ACAAACCAAA
* * **
54924647 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCTGTAATTTTGTAAATCAGG
* * *
54924674 GGTACTTCTATAATTTT-TAAAAAGTCAAG
1 GGTATTTCTGTAATTTTGT--AAA-TCAGG
*
54924703 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCTGTAATTTTGTAAATCAGG
** *
54924730 GGTATTT-TGGTAATTTTACAAAT-TGAG
1 GGTATTTCT-GTAATTTTGTAAATCAG-G
*
54924757 GGTATTTCGGTAATTTTGTAAATCGAGG
1 GGTATTTCTGTAATTTTGTAAATC-AGG
54924785 G
1 G
54924786 TAAAACAGTA
Statistics
Matches: 86, Mismatches: 17, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
26 3 0.03
27 56 0.65
28 8 0.09
29 18 0.21
30 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTATTTCTGTAATTTTGTAAATCAGG
Found at i:54924786 original size:27 final size:27
Alignment explanation
Indices: 54924712--54925138 Score: 301
Period size: 27 Copynumber: 15.8 Consensus size: 27
54924702 GGGTATTTCT
* ** *
54924712 GTAACTTTGTAAATC-AGGGGTATTTTG
1 GTAATTTTGTAAATCGA-GGGTAAATCG
** * **
54924739 GTAATTTTACAAATTGAGGGTATTTCG
1 GTAATTTTGTAAATCGAGGGTAAATCG
* *
54924766 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAATCG
* * * *
54924793 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAATCG
* * *
54924820 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAATCG
* *
54924847 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAATCG
* * *
54924874 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAATCG
* * *
54924901 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTTTGTAAATCGA-GGGTAAATCG
* * * *
54924928 GTAATTATGTAAATTGTGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAATCG
* *
54924955 GTAATTCTGTAAGTCGAGGGTAAAAT-G
1 GTAATTTTGTAAATCGAGGGT-AAATCG
* * *
54924982 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTTTGTAAATCGA-GGGTAAATCG
* * *
54925009 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTTTGTAAATCGA-GGGTAAATCG
* * *
54925036 GTAATTCTATAAATCGAGGGTAAAAT-A
1 GTAATTTTGTAAATCGAGGGT-AAATCG
* *
54925063 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTTTGTAAATC-GAGGGTAAATCG
* * * *
54925090 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAATCG
**
54925117 GTAATTTTACAAATCGAGGGTA
1 GTAATTTTGTAAATCGAGGGTA
54925139 TTTCAATAAT
Statistics
Matches: 340, Mismatches: 48, Indels: 24
0.83 0.12 0.06
Matches are distributed among these distances:
26 9 0.03
27 322 0.95
28 9 0.03
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAATCG
Found at i:54925148 original size:27 final size:27
Alignment explanation
Indices: 54925117--54925312 Score: 186
Period size: 27 Copynumber: 7.3 Consensus size: 27
54925107 GGGTAAAACG
* *
54925117 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCTAGGGTATTTTA
* ** * *
54925144 ATAATTTTACAGGTCGAGGGTATTTCA
1 GTAATTTTACAAATCTAGGGTATTTTA
* *
54925171 GTAATTTCACAAAT-TAGGGGTATTTTG
1 GTAATTTTACAAATCTA-GGGTATTTTA
54925198 GTAATTTTACAAA-CTAGGGGTATTTT-
1 GTAATTTTACAAATCTA-GGGTATTTTA
*
54925224 GATAATTTTACAAA-CTAGGGGTATTTTG
1 G-TAATTTTACAAATCTA-GGGTATTTTA
* * *
54925252 GTAATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAATCTAGGGTATTTTA
* *
54925279 GTAATTTTACAAAGC-AGGGTATTTTG
1 GTAATTTTACAAATCTAGGGTATTTTA
54925305 GTAATTTT
1 GTAATTTT
54925313 GTAAACCAAA
Statistics
Matches: 147, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
26 20 0.14
27 124 0.84
28 3 0.02
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCTAGGGTATTTTA
Found at i:54925149 original size:54 final size:54
Alignment explanation
Indices: 54924738--54925138 Score: 396
Period size: 54 Copynumber: 7.4 Consensus size: 54
54924728 GGGGTATTTT
* * *** *
54924738 GGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* * * * * *
54924792 AGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* * *
54924846 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* * * * * *
54924900 GATAATTATGTAAATC-AGGGGTAAAACGGTAATTATGTAAATTGTGGGTAAAAC
1 GGTAATTTTATAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* * * * * *
54924954 GGTAATTCTGTAAGTCGAGGGTAAAATGATAATTATGTAAATC-AGGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA-GGGTAAAAC
* * * * *
54925008 GGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAT
1 GGTAATTTTATAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* * * * *
54925062 AGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAAC
1 GGTAATTTTATAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
*
54925116 GGTAATTTTACAAATCGAGGGTA
1 GGTAATTTTATAAATCGAGGGTA
54925139 TTTCAATAAT
Statistics
Matches: 292, Mismatches: 47, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
53 2 0.01
54 286 0.98
55 4 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (54 bp):
GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:54925165 original size:81 final size:81
Alignment explanation
Indices: 54924764--54925138 Score: 441
Period size: 81 Copynumber: 4.6 Consensus size: 81
54924754 GAGGGTATTT
* * * * * * * * *
54924764 CGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTA
1 CGGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAATAATTATG
54924829 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * **
54924845 CGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATG
1 CGGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAATAATTATG
54924910 TAAATC-AGGGGTAAAA
66 TAAATCGA-GGGTAAAA
*** * * *
54924926 CGGTAATTATGTAAATTGTGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGATAATTATG
1 CGGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAATAATTATG
54924991 TAAATC-AGGGGTAAAA
66 TAAATCGA-GGGTAAAA
* * * *
54925007 CGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTG
1 CGGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAATAATTATG
54925072 TAAA-CTGAGGGTAAAA
66 TAAATC-GAGGGTAAAA
* * * *
54925088 CGGTAATTCTATAAATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTA
1 CGGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
54925139 TTTCAATAAT
Statistics
Matches: 266, Mismatches: 25, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
80 2 0.01
81 263 0.99
82 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (81 bp):
CGGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAATAATTATG
TAAATCGAGGGTAAAA
Found at i:54925326 original size:26 final size:26
Alignment explanation
Indices: 54925189--54925329 Score: 138
Period size: 27 Copynumber: 5.3 Consensus size: 26
54925179 ACAAATTAGG
* * *
54925189 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
* * * *
54925216 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
54925243 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
* * * *
54925269 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTATAAACCAA
*
54925296 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
*
54925322 AGTATTTT
1 GGTATTTT
54925330 AAACATGGAT
Statistics
Matches: 98, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 28 0.29
27 70 0.71
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTATAAACCAA
Found at i:54931498 original size:42 final size:42
Alignment explanation
Indices: 54931436--54931672 Score: 271
Period size: 42 Copynumber: 5.6 Consensus size: 42
54931426 CTCAATTCAA
*
54931436 GATTTACGTGTAAGACCATGTCTGGGACATCGACATCATATCT
1 GATTT-CGTGTAAGACCATGTCTGGGACATCGACATCGTATCT
* * * *
54931479 GATTTCGTGTAAGATCATGTTTGAGACATC-AGCATTGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGA-CATCGTATCT
* * *
54931521 GATTTCGTGTAAGACCATGTCTAGGACATC-AGTATCATATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGA-CATCGTATCT
* * * *
54931563 GATTTCTTGAAAGACCATGTCTAGGACATCGGCATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGACATCGTATCT
* * * *
54931605 GATTTTGTGTAAGACCATGTATGGGACATTGGCATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGACATCGTATCT
* *
54931647 GATTTCGTGTAAGACCCTGTTTGGGA
1 GATTTCGTGTAAGACCATGTCTGGGA
54931673 TAAAGGCATT
Statistics
Matches: 166, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
41 1 0.01
42 160 0.96
43 5 0.03
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGACATCGACATCGTATCT
Found at i:54931533 original size:84 final size:85
Alignment explanation
Indices: 54931436--54931669 Score: 303
Period size: 84 Copynumber: 2.8 Consensus size: 85
54931426 CTCAATTCAA
*
54931436 GATTTACGTGTAAGACCATGTCTGGGACATCGACATCATATCTGATTTCGTGTAAGATCATGTTT
1 GATTT-CGTGTAAGACCATGTCTGGGACATCGACATCATATCTGATTTCGTGTAAGACCATGTTT
*
54931501 GA-GACATCAGCATTGTATCT
65 GAGGACATCAGCATCGTATCT
* * * * *
54931521 GATTTCGTGTAAGACCATGTCTAGGACATC-AGTATCATATCTGATTTCTTGAAAGACCATGTCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGA-CATCATATCTGATTTCGTGTAAGACCATGTTT
*
54931585 -AGGACATCGGCATCGTATCT
65 GAGGACATCAGCATCGTATCT
* * * * * *
54931605 GATTTTGTGTAAGACCATGTATGGGACATTGGCATCGTATCTGATTTCGTGTAAGACCCTGTTTG
1 GATTTCGTGTAAGACCATGTCTGGGACATCGACATCATATCTGATTTCGTGTAAGACCATGTTTG
54931670 GGATAAAGGC
Statistics
Matches: 126, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
83 2 0.02
84 119 0.94
85 5 0.04
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (85 bp):
GATTTCGTGTAAGACCATGTCTGGGACATCGACATCATATCTGATTTCGTGTAAGACCATGTTTG
AGGACATCAGCATCGTATCT
Found at i:54934605 original size:20 final size:20
Alignment explanation
Indices: 54934580--54934618 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
54934570 GATTAAAATG
54934580 AAAAATCGTAAAATTTGATA
1 AAAAATCGTAAAATTTGATA
**
54934600 AAAAATTTTAAAATTTGAT
1 AAAAATCGTAAAATTTGAT
54934619 GAATACATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (20 bp):
AAAAATCGTAAAATTTGATA
Found at i:54935666 original size:6 final size:6
Alignment explanation
Indices: 54935655--54935756 Score: 95
Period size: 6 Copynumber: 16.8 Consensus size: 6
54935645 AACCAAAATG
* *
54935655 AGAATC AGAATC AGAATC AGTCA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
54935703 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
54935752 AGAAT
1 AGAAT
54935757 GTGAATGCAA
Statistics
Matches: 79, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
5 5 0.06
6 68 0.86
7 4 0.05
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:54935691 original size:30 final size:30
Alignment explanation
Indices: 54935655--54935756 Score: 152
Period size: 30 Copynumber: 3.4 Consensus size: 30
54935645 AACCAAAATG
* *
54935655 AGAATCAGAATCAGAATCAGTCACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
54935685 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
*
54935715 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
54935746 AGAATCAGAAT
1 AGAATCAGAAT
54935757 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
29 1 0.02
30 43 0.65
31 22 0.33
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:54935917 original size:27 final size:26
Alignment explanation
Indices: 54935875--54935926 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
54935865 GCGATGCTGC
*
54935875 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
54935901 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
54935927 TTGCAACGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:54936117 original size:27 final size:27
Alignment explanation
Indices: 54936055--54936117 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
54936045 CAGTCACTTG
*
54936055 CCCACAAGGGCAAAACAGTCATTTAAC
1 CCCACAAGGGCAAAACAGTAATTTAAC
* ** ** *
54936082 ACCTTAAGGGCAAAATGGTAATTTTAC
1 CCCACAAGGGCAAAACAGTAATTTAAC
54936109 CCCACAAGG
1 CCCACAAGG
54936118 TATGTCGGTA
Statistics
Matches: 26, Mismatches: 10, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.19
Consensus pattern (27 bp):
CCCACAAGGGCAAAACAGTAATTTAAC
Found at i:54936313 original size:27 final size:27
Alignment explanation
Indices: 54936098--54936319 Score: 275
Period size: 27 Copynumber: 8.3 Consensus size: 27
54936088 AGGGCAAAAT
* * * *
54936098 GGTAATTTTACCCCACA-AGGTATGTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
54936124 GGTAATTCCACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
54936151 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
54936178 GGTAATTCTACCCTATAGGGGTATTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
54936205 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
54936232 AGTAATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
54936259 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
54936286 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
54936313 GCTAATT
1 GGTAATT
54936320 TTGTAAATCG
Statistics
Matches: 172, Mismatches: 23, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
26 13 0.08
27 159 0.92
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:54936683 original size:27 final size:27
Alignment explanation
Indices: 54936356--54936671 Score: 346
Period size: 27 Copynumber: 11.7 Consensus size: 27
54936346 TCTATAAATA
* **
54936356 AAGGGTACTTTGGTAATTTTACAAGTC
1 AAGGGTATTTTGGTAATTTTACAAACC
* *** ***
54936383 GAGGGTATTTCCATAATTTTACAGGTC
1 AAGGGTATTTTGGTAATTTTACAAACC
* * * **
54936410 GAGGGTATTTTAGTAATTTCACAAATT
1 AAGGGTATTTTGGTAATTTTACAAACC
*
54936437 AAGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACC
* *
54936464 AGGGGTATTTTGATAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* *
54936491 AGGGGTATTTTGATAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* * *
54936518 -AGTGGTATTTTGGAAATTTTATAAACA
1 AAG-GGTATTTTGGTAATTTTACAAACC
*
54936545 AAGGGTATTTTAGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* *
54936572 AGGGGTATTTTGGTAATTTTGCAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* *
54936599 AAGGGTATTTTGGTTATTTTATAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
*
54936626 AAGGGTATTTTAGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
*
54936653 AAAGGTATTTTGGTAATTT
1 AAGGGTATTTTGGTAATTT
54936672 GGCAAACTAA
Statistics
Matches: 246, Mismatches: 41, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 243 0.99
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACC
Found at i:54938647 original size:6 final size:6
Alignment explanation
Indices: 54938636--54938707 Score: 76
Period size: 6 Copynumber: 11.8 Consensus size: 6
54938626 AACCAAAATG
* *
54938636 AGAATC AGAATC AGAATC AGTCA-C AGAATC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
*
54938684 AG-GTGAC AGAATC AGAATC AGAAT
1 AGAAT--C AGAATC AGAATC AGAAT
54938708 GTGAATGCAA
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
5 2 0.04
6 49 0.89
7 3 0.05
8 1 0.02
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:54938867 original size:27 final size:26
Alignment explanation
Indices: 54938825--54938876 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
54938815 GCGAGGCTGC
*
54938825 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
54938851 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
54938877 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:54939332 original size:27 final size:27
Alignment explanation
Indices: 54939135--54939338 Score: 291
Period size: 27 Copynumber: 7.6 Consensus size: 27
54939125 TACCGCACAA
* *
54939135 GGTATGTCGGTAATTCCACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
**
54939162 GGTATTTTAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
54939189 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
54939216 GGTATTACGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
54939243 GGTATTTCAGTAATTCTACTCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
54939270 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
54939297 GGTATTTCGGTAATTCTACCTTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
54939324 GGTATTTCGCTAATT
1 GGTATTTCGGTAATT
54939339 TTGTAAATCG
Statistics
Matches: 158, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 158 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:54939352 original size:27 final size:27
Alignment explanation
Indices: 54939322--54939639 Score: 138
Period size: 27 Copynumber: 11.9 Consensus size: 27
54939312 CTACCTTACA
**
54939322 AGGGTATTTCGCTAATTTTGTAAATCG
1 AGGGTATTTCGCTAATTTTACAAATCG
*** * * * *
54939349 AGGGTAAAACGGTAATTCTATAAATCA
1 AGGGTATTTCGCTAATTTTACAAATCG
* *
54939376 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGCTAATTTTACAAATCG
*
54939403 AGGGTATTTC-CATAATTTTACAAGTCG
1 AGGGTATTTCGC-TAATTTTACAAATCG
* **
54939430 AGGGTATTT---TAATTTCACAAATTA
1 AGGGTATTTCGCTAATTTTACAAATCG
* * *
54939454 AGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTTCGCTAATTTTACAAATCG
* * *
54939480 AGGGGTATTTTGATAATTTTACAAA-CC
1 A-GGGTATTTCGCTAATTTTACAAATCG
* * *
54939507 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCGCTAATTTTACAAATCG
* * * *
54939534 AGTGGTATTTTGGTAATTTTATAAA-CAA
1 AG-GGTATTTCGCTAATTTTACAAATC-G
* *
54939562 AGGGTATTTTAG-TAATTTTACAAA-CC
1 AGGGTA-TTTCGCTAATTTTACAAATCG
* * * * * *
54939588 AGGGGTATTTTGGTGATTTTATAAACCA
1 A-GGGTATTTCGCTAATTTTACAAATCG
*
54939616 AGGGTATTTTAG-TAATTTTACAAA
1 AGGGTA-TTTCGCTAATTTTACAAA
54939640 CCAGAGGTAT
Statistics
Matches: 240, Mismatches: 37, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
24 20 0.08
26 10 0.04
27 198 0.82
28 12 0.05
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGCTAATTTTACAAATCG
Found at i:54939364 original size:81 final size:80
Alignment explanation
Indices: 54939145--54939368 Score: 202
Period size: 81 Copynumber: 2.8 Consensus size: 80
54939135 GGTATGTCGG
* * * * * ***
54939145 TAATTCCACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTA-TCTAAAGGGGTAAAACGGTAATTCTACCC
*
54939210 TATAGGGGTATTACGA
65 TACAGGGGTATTACGA
* * *** *
54939226 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACTCTACAGGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTA-TCTAAAGGGGTAAAACGGTAATTCTACCC
* *
54939291 TACAGGGGTATTTCGG
65 TACAGGGGTATTACGA
* *
54939307 TAATTCTACCTTACAAGGGTATTTC-GCTAATT-T-TGTAAATCGAGGGTAAAACGGTAATTCTA
1 TAATTCTACCCTACAAGGGTATTTCAG-TAATTCTATCTAAA--G-GGGTAAAACGGTAATTCTA
54939369 TAAATCAAGG
Statistics
Matches: 124, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
78 4 0.03
80 3 0.02
81 117 0.94
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (80 bp):
TAATTCTACCCTACAAGGGTATTTCAGTAATTCTATCTAAAGGGGTAAAACGGTAATTCTACCCT
ACAGGGGTATTACGA
Found at i:54939640 original size:27 final size:27
Alignment explanation
Indices: 54939359--54939660 Score: 308
Period size: 27 Copynumber: 11.3 Consensus size: 27
54939349 AGGGTAAAAC
* * * *
54939359 GGTAATTCTATAAATCAAGGGTACTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
** * *
54939386 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAACCAAGGGTATTTT
** ** *
54939413 CATAATTTTACAAGTCGAGGGTA-TTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* **
54939439 --TAATTTCACAAATTAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
54939464 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
54939491 GATAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
54939518 GGTAATTTTACAAACC-AGTGGTATTTT
1 GGTAATTTTACAAACCAAG-GGTATTTT
* *
54939545 GGTAATTTTATAAACAAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
54939572 AGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
54939599 GGTGATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
*
54939626 AGTAATTTTACAAACC-AGAGGTATTTT
1 GGTAATTTTACAAACCAAG-GGTATTTT
54939653 GGTAATTT
1 GGTAATTT
54939661 GGTAAACTAA
Statistics
Matches: 235, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
24 17 0.07
25 3 0.01
26 5 0.02
27 208 0.89
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAACCAAGGGTATTTT
Found at i:54941675 original size:6 final size:6
Alignment explanation
Indices: 54941664--54941765 Score: 104
Period size: 6 Copynumber: 16.8 Consensus size: 6
54941654 AACCAAAATG
* *
54941664 AGAATC AGAATC AGAATC AGTCA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
*
54941712 AGTAA-C AGAATC AGAATC AGAATC AGAATC AG-ATGAC AGAATC AAAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
54941761 AGAAT
1 AGAAT
54941766 ATGAATGCAA
Statistics
Matches: 81, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
5 6 0.07
6 67 0.83
7 5 0.06
8 3 0.04
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:54941679 original size:30 final size:30
Alignment explanation
Indices: 54941643--54941740 Score: 94
Period size: 30 Copynumber: 3.3 Consensus size: 30
54941633 AAGAAACATT
* *
54941643 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGGAACCAGAATCAGAATCAGA
** *
54941673 ATCAGAATCAG-TCACAGAATCAGAATCAGA
1 ATCAGAATTGGAAC-CAGAATCAGAATCAGA
*
54941703 ATCA-ATATTAGTAA-CAGAATCAGAATCAGA
1 ATCAGA-ATT-GGAACCAGAATCAGAATCAGA
54941733 ATCAGAAT
1 ATCAGAAT
54941741 CAGATGACAG
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
29 2 0.04
30 51 0.94
31 1 0.02
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.19
Consensus pattern (30 bp):
ATCAGAATTGGAACCAGAATCAGAATCAGA
Found at i:54941926 original size:27 final size:26
Alignment explanation
Indices: 54941885--54941935 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
54941875 CGAGACTGCC
*
54941885 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
*
54941911 AGATATATGTGGCGAAGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
54941936 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:54941976 original size:67 final size:67
Alignment explanation
Indices: 54941868--54942021 Score: 281
Period size: 67 Copynumber: 2.3 Consensus size: 67
54941858 CACCACAAAA
* *
54941868 ATTGCAGCGAGACTGCCAGATATTGTGACGAAGTCACCAGAATAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
54941933 AG
66 AG
54941935 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
54942000 AG
66 AG
*
54942002 ATTGCAACGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
54942022 ACGCTTCCTC
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 84 1.00
ACGTcount: A:0.32, C:0.22, G:0.28, T:0.18
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
AG
Found at i:54941993 original size:27 final size:26
Alignment explanation
Indices: 54941951--54942002 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
54941941 GCGAGGCTGC
*
54941951 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
54941977 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
54942003 TTGCAACGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:54942301 original size:27 final size:27
Alignment explanation
Indices: 54942271--54942440 Score: 252
Period size: 27 Copynumber: 6.3 Consensus size: 27
54942261 GGAATCTCGG
* **
54942271 TAATTCCACCCTACAGGGGTATTTTAA
1 TAATTCTACCCTACAGGGGTATTTCGA
54942298 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
54942325 TAATTCTACCCTATAGGGGTATTGCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
54942352 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
54942379 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
54942405 GTAATTCTACCCTATAGGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTCGA
*
54942433 TTATTCTA
1 TAATTCTA
54942441 ATTTTCAAGG
Statistics
Matches: 131, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
26 1 0.01
27 130 0.99
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:54942439 original size:81 final size:81
Alignment explanation
Indices: 54942267--54942440 Score: 278
Period size: 81 Copynumber: 2.1 Consensus size: 81
54942257 ACAAGGAATC
* *
54942267 TCGGTAATTCCACCCTACAGGGGTATTTTAATAATTCTACCCTACAGGGGTATTTCGATAATTCT
1 TCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGATAATTCT
54942332 ACCCTATAGGGGTATT
66 ACCCTATAGGGGTATT
* * *
54942348 GCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC-AGTAATTC
1 TCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGA-TAATTC
54942412 TACCCTATAGGGGTATT
65 TACCCTATAGGGGTATT
*
54942429 TCGGTTATTCTA
1 TCGGTAATTCTA
54942441 ATTTTCAAGG
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 1 0.01
81 83 0.99
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (81 bp):
TCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGATAATTCT
ACCCTATAGGGGTATT
Found at i:54942453 original size:54 final size:54
Alignment explanation
Indices: 54942284--54942464 Score: 213
Period size: 54 Copynumber: 3.4 Consensus size: 54
54942274 TTCCACCCTA
* * *
54942284 CAGGGGTATTTTAATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTAT
1 CAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTA-CCTTT
* * *
54942339 -AGGGGTATTGC-GATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTA
1 CAGGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTT
* * * **
54942392 CAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTTATTCTAATTTT
1 CAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTT
* *
54942446 CAAGGGTATTTCACTAATT
1 CAGGGGTATTTCAGTAATT
54942465 TTGTAAATCG
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
53 2 0.02
54 104 0.97
55 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (54 bp):
CAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTT
Found at i:54942453 original size:81 final size:81
Alignment explanation
Indices: 54942271--54942464 Score: 246
Period size: 81 Copynumber: 2.4 Consensus size: 81
54942261 GGAATCTCGG
* * * *
54942271 TAATTCCACCCTACAGGGGTATTTTAATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
1 TAATTCTAACCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
54942336 TATAGGGGTATTGCGA
66 TATAGGGGTATTGCGA
* * *
54942352 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC-AGTAATTCTACC
1 TAATTCTAACCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACC
* *
54942416 CTATAGGGGTATTTCGG
65 CTATAGGGGTATTGCGA
* ** * *
54942433 TTATTCTAATTTTCAAGGGTATTTCACTAATT
1 TAATTCTAACCTACAAGGGTATTTCAATAATT
54942465 TTGTAAATCG
Statistics
Matches: 99, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 98 0.99
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (81 bp):
TAATTCTAACCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
TATAGGGGTATTGCGA
Found at i:54942490 original size:27 final size:27
Alignment explanation
Indices: 54942460--54942534 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
54942450 GGTATTTCAC
*
54942460 TAATTTTGTAAATCGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGG
* * ***
54942487 TAATTCTATAAATCAAGGGTACTTTGG
1 TAATTTTATAAATCGAGGGTAAAATGG
*
54942514 TAATTTTATAAGTCGAGGGTA
1 TAATTTTATAAATCGAGGGTA
54942535 TTTCCATAAT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.36
Consensus pattern (27 bp):
TAATTTTATAAATCGAGGGTAAAATGG
Found at i:54942571 original size:27 final size:27
Alignment explanation
Indices: 54942502--54942794 Score: 152
Period size: 27 Copynumber: 10.9 Consensus size: 27
54942492 CTATAAATCA
* * *
54942502 AGGGTACTTTGGTAATTTTATAAGTCG
1 AGGGTATTTTAGTAATTTTACAAGTCG
* *
54942529 AGGGTATTTCCA-TAATTTTACAGGTCG
1 AGGGTATTT-TAGTAATTTTACAAGTCG
* * *
54942556 AGGGTATTTTAGTAATTTCACAAAT-T
1 AGGGTATTTTAGTAATTTTACAAGTCG
* * *
54942582 AGGGGTATTTTGGTAATTTTACAA-ACT
1 A-GGGTATTTTAGTAATTTTACAAGTCG
* *
54942609 AGGGGTATTTT-GATAATTTTACAA-ACT
1 A-GGGTATTTTAG-TAATTTTACAAGTCG
* * *
54942636 AGGGGTATTTTGGTAATTTTACAA-ACC
1 A-GGGTATTTTAGTAATTTTACAAGTCG
* * * **
54942663 AGTGGTATTTTGGTAATTTTATAAATAA
1 AG-GGTATTTTAGTAATTTTACAAGTCG
* * *
54942691 AGAGTATTTTAGTAATTTTACAA-ACC
1 AGGGTATTTTAGTAATTTTACAAGTCG
* * * *
54942717 AGGGGTATTTTGGTAATTTTGCAA-ACC
1 A-GGGTATTTTAGTAATTTTACAAGTCG
* * * ** *
54942744 AGGGGTATTTTGGTGATTTTATAAACCA
1 A-GGGTATTTTAGTAATTTTACAAGTCG
54942772 AGGGTATTTTAGTAATTTTACAA
1 AGGGTATTTTAGTAATTTTACAA
54942795 ACCTGAGGAA
Statistics
Matches: 221, Mismatches: 35, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
26 5 0.02
27 211 0.95
28 5 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTACAAGTCG
Found at i:54942571 original size:81 final size:80
Alignment explanation
Indices: 54942486--54942796 Score: 254
Period size: 81 Copynumber: 3.8 Consensus size: 80
54942476 GGGTAAAATG
* * *
54942486 GTAATTCTATAAATCAAGGGTACTTTGGTAATTTTATAAGTCGA-GGGTATTTCCATAATTTTAC
1 GTAATT-TACAAATCAAGGGTATTTTGGTAATTTTATAA-ACGAGGGGTATTTCCATAATTTTAC
**
54942550 AGGTCGA-GGGTATTTTA
64 A-AACGAGGGGTATTTTA
* * * * **
54942567 GTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACA
1 GTAATTT-ACAAATCAAGGGTATTTTGGTAATTTTATAAACGAGGGGTATTTCCATAATTTTACA
* *
54942632 AACTAGGGGTATTTTG
65 AACGAGGGGTATTTTA
* ** * * *
54942648 GTAATTTTACAAA-CCAGTGGTATTTTGGTAATTTTATAAATAAAGAGTATTT-TAGTAATTTTA
1 GTAA-TTTACAAATCAAG-GGTATTTTGGTAATTTTATAAACGAGGGGTATTTCCA-TAATTTTA
* *
54942711 CAAACCAGGGGTATTTTG
63 CAAACGAGGGGTATTTTA
* * * * * * *
54942729 GTAATTTTGCAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT-TAGTAATTTTAC
1 GTAA-TTTACAAATCAAGGGTATTTTGGTAATTTTATAAACGAGGGGTATTTCCA-TAATTTTAC
54942793 AAAC
64 AAAC
54942797 CTGAGGAATT
Statistics
Matches: 193, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
80 7 0.04
81 181 0.94
82 5 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (80 bp):
GTAATTTACAAATCAAGGGTATTTTGGTAATTTTATAAACGAGGGGTATTTCCATAATTTTACAA
ACGAGGGGTATTTTA
Found at i:54942588 original size:54 final size:54
Alignment explanation
Indices: 54942530--54942753 Score: 168
Period size: 54 Copynumber: 4.1 Consensus size: 54
54942520 TATAAGTCGA
** *
54942530 GGGTATTTCCATAATTTTACAGGTCGA-GGGTATTTT-AGTAATTTCACAAATTAG
1 GGGTATTTCCATAATTTTACA-AACGAGGGGTATTTTGA-TAATTTCACAAACTAG
*** * *
54942584 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTCCATAATTTTACAAACGAGGGGTATTTTGATAATTTCACAAACTAG
*** * * * * * *
54942638 GGGTATTTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTATAAA-TAAA
1 GGGTATTTCCATAATTTTACAAACGAGGGGTATTTTGATAATTTCACAAACT-AG
* * * * ** *
54942692 GAGTATTT-TAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACCAG
1 GGGTATTTCCA-TAATTTTACAAACGAGGGGTATTTTGATAATTTCACAAACTAG
54942746 GGGTATTT
1 GGGTATTT
54942754 TGGTGATTTT
Statistics
Matches: 143, Mismatches: 22, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
53 3 0.02
54 139 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTCCATAATTTTACAAACGAGGGGTATTTTGATAATTTCACAAACTAG
Found at i:54942796 original size:27 final size:27
Alignment explanation
Indices: 54942557--54942816 Score: 322
Period size: 27 Copynumber: 9.6 Consensus size: 27
54942547 TACAGGTCGA
* * **
54942557 GGGTATTTTAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
54942584 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
54942611 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
54942638 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * ** *
54942665 TGGTATTTTGGTAATTTTATAAATAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
54942692 GAGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
54942719 GGGTATTTTGGTAATTTTGCAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
54942746 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
54942773 GGGTATTTTAGTAATTTTACAAACCTG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
54942800 AGGAATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
54942817 GGTAAACTAA
Statistics
Matches: 200, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 200 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:54943061 original size:20 final size:20
Alignment explanation
Indices: 54943009--54943062 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
54942999 AGGCCCATTG
*
54943009 GGCCCA-CATGGCCCCTTTC
1 GGCCCATCACGGCCCCTTTC
* * *
54943028 GGCTCATTATGGCCCCTTTC
1 GGCCCATCACGGCCCCTTTC
*
54943048 GGCCCATCGCGGCCC
1 GGCCCATCACGGCCC
54943063 GAAGTAGCCA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 5 0.18
20 23 0.82
ACGTcount: A:0.09, C:0.44, G:0.24, T:0.22
Consensus pattern (20 bp):
GGCCCATCACGGCCCCTTTC
Found at i:54943168 original size:13 final size:13
Alignment explanation
Indices: 54943150--54943174 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
54943140 CTCTTAGCCG
54943150 ACGCCCAACCCAA
1 ACGCCCAACCCAA
54943163 ACGCCCAACCCA
1 ACGCCCAACCCA
54943175 TACAAGCACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.56, G:0.08, T:0.00
Consensus pattern (13 bp):
ACGCCCAACCCAA
Found at i:54946388 original size:27 final size:27
Alignment explanation
Indices: 54946329--54946390 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
54946319 TCGATTTGTA
* * * *
54946329 AAAATGACCGTTATGCCCCTGTAGGGT
1 AAAATGACCGTAATACCCCTATAGAGT
*
54946356 AAAATGACCGTAATACCCCTATATAGT
1 AAAATGACCGTAATACCCCTATAGAGT
*
54946383 AGAATGAC
1 AAAATGAC
54946391 GATTATGCCT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.24
Consensus pattern (27 bp):
AAAATGACCGTAATACCCCTATAGAGT
Found at i:54950938 original size:23 final size:23
Alignment explanation
Indices: 54950908--54950954 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
54950898 AATCTGAACG
54950908 TATGATTCAAATCTTGGAAGATA
1 TATGATTCAAATCTTGGAAGATA
*
54950931 TATGATTCAGATCTTGGAAGATA
1 TATGATTCAAATCTTGGAAGATA
54950954 T
1 T
54950955 GCTTCGATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (23 bp):
TATGATTCAAATCTTGGAAGATA
Found at i:54952734 original size:44 final size:43
Alignment explanation
Indices: 54952595--54952748 Score: 149
Period size: 44 Copynumber: 3.6 Consensus size: 43
54952585 TAGTACAATC
**
54952595 CCAACGTCCCAGACGTGGTCTTACATGT-AATCATATATCGATG
1 CCAACGTCCCAGACGTGGTCTTACACATAAATCATA-ATCGATG
* * *
54952638 CC-ACTGTCCTAGACAG-GGTCTTACACGA-AATTGGAT-AT-GATG
1 CCAAC-GTCCCAGAC-GTGGTCTTACAC-ATAAAT-CATAATCGATG
*
54952680 CCAACATCCCAGACGTGGTCTTACACATAAATCATAAGTCGATG
1 CCAACGTCCCAGACGTGGTCTTACACATAAATCATAA-TCGATG
*
54952724 CCAATGTCCCAGACGTGGTCTTACA
1 CCAACGTCCCAGACGTGGTCTTACA
54952749 TGATATCACA
Statistics
Matches: 89, Mismatches: 11, Indels: 21
0.74 0.09 0.17
Matches are distributed among these distances:
41 4 0.04
42 29 0.33
43 24 0.27
44 30 0.34
45 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
CCAACGTCCCAGACGTGGTCTTACACATAAATCATAATCGATG
Found at i:54960448 original size:49 final size:49
Alignment explanation
Indices: 54960388--54960595 Score: 332
Period size: 49 Copynumber: 4.3 Consensus size: 49
54960378 GTATGAGATA
54960388 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
54960437 TATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
54960485 TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * *
54960534 TATATATGTGATAAGGCCTAGTGGCCAACGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
54960581 TATAAATGTGATAAG
1 TATATATGTGATAAG
54960596 TCCTGAAGGG
Statistics
Matches: 150, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 17 0.11
48 47 0.31
49 86 0.57
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:54960499 original size:97 final size:98
Alignment explanation
Indices: 54960388--54960581 Score: 327
Period size: 97 Copynumber: 2.0 Consensus size: 98
54960378 GTATGAGATA
*
54960388 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA-G
1 TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
* *
54960452 CCTAATGGCCGATGTGATGAATGTGAAAGTGTG
66 CCTAATGGCCAACGTGATGAATGTGAAAGTGTG
54960485 TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
* * *
54960550 CCTAGTGGCCAACGTGATGGATGTGGAAGTGT
66 CCTAATGGCCAACGTGATGAATGTGAAAGTGT
54960582 ATAAATGTGA
Statistics
Matches: 90, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
97 62 0.69
98 28 0.31
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.30
Consensus pattern (98 bp):
TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
CCTAATGGCCAACGTGATGAATGTGAAAGTGTG
Found at i:54962799 original size:40 final size:40
Alignment explanation
Indices: 54962694--54963044 Score: 623
Period size: 40 Copynumber: 8.8 Consensus size: 40
54962684 GAGAATTGAG
*
54962694 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
54962734 AGTGATGTAT-CGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
54962773 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
54962813 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
54962853 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
54962893 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
54962933 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
54962973 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
54963013 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
54963045 ATCATGCTGG
Statistics
Matches: 302, Mismatches: 8, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
39 38 0.13
40 264 0.87
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:54963882 original size:40 final size:40
Alignment explanation
Indices: 54963788--54963968 Score: 145
Period size: 40 Copynumber: 4.5 Consensus size: 40
54963778 TTCGAATGGT
* * * * *
54963788 ATCCGGGATAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGC-GAGTCACTAA
*
54963829 ATCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCT-AATTCCCGAAGGCATTTGTGCGAGTCACTAA
* * *
54963869 ATCCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTCACTA-A
* * * * * *
54963910 A-CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTAT
1 ATCCGGGCTAAT-TCCCGAAGGCATTTGTGCGAGTCACTAA
* *
54963949 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGCTAATTCCCGAAGG
54963969 TACGTGATTC
Statistics
Matches: 116, Mismatches: 18, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
39 14 0.12
40 73 0.63
41 29 0.25
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTCACTAA
Found at i:54966722 original size:49 final size:49
Alignment explanation
Indices: 54966662--54966821 Score: 252
Period size: 49 Copynumber: 3.3 Consensus size: 49
54966652 GTATGAGATA
54966662 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
54966711 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * *
54966760 TATATATGTGATAAGGCCTAGTGGCCAACGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
54966807 TATAAATGTGATAAG
1 TATATATGTGATAAG
54966822 TCCCGAAGGG
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 17 0.16
49 88 0.84
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:54976163 original size:27 final size:26
Alignment explanation
Indices: 54976119--54976170 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
54976109 CTCGCTGCAA
*
54976119 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
54976146 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
54976171 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:54988184 original size:16 final size:15
Alignment explanation
Indices: 54988160--54988189 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
54988150 AACTGTTTTA
54988160 TTACAAATTTCACTC
1 TTACAAATTTCACTC
54988175 TTACATAATTTCACT
1 TTACA-AATTTCACT
54988190 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:54988515 original size:50 final size:50
Alignment explanation
Indices: 54988389--54988683 Score: 283
Period size: 50 Copynumber: 5.8 Consensus size: 50
54988379 AACCGAAGCT
* * * *
54988389 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAACA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACG
** * * *
54988438 AT-TCGGTACATGTAGTAGCCTACACTTAGTACAACACACGTGACTTAACG
1 ATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACG
* * *
54988488 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTG
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTT-AA--CG
* * * *
54988540 TTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTG
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAAC-G
* *
54988591 -TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CT-TAACG
*** * * *
54988642 ATCTTAAACACATCGTAGCCTGCACATAGTATTACACATGTG
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTG
54988684 TTCTCACAAT
Statistics
Matches: 202, Mismatches: 33, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
48 1 0.00
49 37 0.18
50 81 0.40
51 3 0.01
52 79 0.39
53 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACG
Found at i:54988660 original size:102 final size:98
Alignment explanation
Indices: 54988389--54988683 Score: 290
Period size: 102 Copynumber: 2.9 Consensus size: 98
54988379 AACCGAAGCT
* * **
54988389 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATTCGGTACATGTAG
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-AATTC-GTACACATAG
* * * *
54988453 TAGCCTACACTTAGTACAACACACGTGACTTAACG
64 TAGCCTGCACTTAGTACTACACATGTGACCTAACG
* * * ** *
54988488 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTTCGGGTACGCA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA--AATTC--GTACACA
54988552 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTG
61 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAAC-G
* *
54988591 -TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAACCATCTTAAACACAT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAA--TTCGT--ACACAT
* * *
54988655 CGTAGCCTGCACATAGTATTACACATGTG
62 AGTAGCCTGCACTTAGTACTACACATGTG
54988684 TTCTCACAAT
Statistics
Matches: 160, Mismatches: 26, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
99 39 0.24
100 3 0.02
101 3 0.02
102 113 0.71
103 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (98 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAATTCGTACACATAGTA
GCCTGCACTTAGTACTACACATGTGACCTAACG
Found at i:54991602 original size:15 final size:15
Alignment explanation
Indices: 54991582--54991641 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
54991572 TATAGATAAC
* *
54991582 AAGAAAACCAGGATT
1 AAGAAAACCAAGATA
*
54991597 AAGAAATCCAAGATA
1 AAGAAAACCAAGATA
*
54991612 AAGAAATCCAAGATA
1 AAGAAAACCAAGATA
* *
54991627 GAGAAATCCAAGATA
1 AAGAAAACCAAGATA
54991642 CAATATCATA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 41 1.00
ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13
Consensus pattern (15 bp):
AAGAAAACCAAGATA
Found at i:54991617 original size:30 final size:30
Alignment explanation
Indices: 54991582--54991641 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
54991572 TATAGATAAC
*
54991582 AAGAAAACCAGGATTA-AGAAATCCAAGATA
1 AAGAAAACCAAGA-TAGAGAAATCCAAGATA
*
54991612 AAGAAATCCAAGATAGAGAAATCCAAGATA
1 AAGAAAACCAAGATAGAGAAATCCAAGATA
54991642 CAATATCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13
Consensus pattern (30 bp):
AAGAAAACCAAGATAGAGAAATCCAAGATA
Found at i:54994210 original size:16 final size:15
Alignment explanation
Indices: 54994186--54994215 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
54994176 AACTGTTTTA
54994186 TTACAAATTTCACTC
1 TTACAAATTTCACTC
54994201 TTACATAATTTCACT
1 TTACA-AATTTCACT
54994216 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:54996076 original size:29 final size:29
Alignment explanation
Indices: 54996043--54996145 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
54996033 TGAATGTGAC
* *
54996043 TGGGCCTAACGGGCTATATAAATTTGATT
1 TGGGCCTAATGGGCCATATAAATTTGATT
* **
54996072 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATTTGATT
* *
54996101 TGGGCCTAAAGGGGCCATATGAATTTGA-T
1 TGGGCCT-AATGGGCCATATAAATTTGATT
*
54996130 TGGGCATAATGGGCCA
1 TGGGCCTAATGGGCCA
54996146 GTTACAGGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
28 8 0.13
29 38 0.62
30 15 0.25
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATTTGATT
Found at i:54996130 original size:30 final size:28
Alignment explanation
Indices: 54996030--54996145 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 28
54996020 GTGAGCATGA
* *
54996030 ATATGAATGTGACTGGGCCTAACGGGCT
1 ATATGAATGTGATTGGGCCTAACGGGCC
* * *
54996058 ATATAAATTTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAACGGGCC
* *
54996087 ATAT-ACAGGTGATTTGGGCCTAAAGGGGCC
1 ATATGA-ATGTGA-TTGGGCCT-AACGGGCC
* * *
54996117 ATATGAATTTGATTGGGCATAATGGGCC
1 ATATGAATGTGATTGGGCCTAACGGGCC
54996145 A
1 A
54996146 GTTACAGGTA
Statistics
Matches: 72, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
28 19 0.26
29 37 0.51
30 15 0.21
31 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAACGGGCC
Found at i:54996133 original size:58 final size:58
Alignment explanation
Indices: 54996043--54996154 Score: 156
Period size: 58 Copynumber: 1.9 Consensus size: 58
54996033 TGAATGTGAC
* *
54996043 TGGGCCTAACGGGCTATATAAATTTGATTTGGGCCTAATGGGCCA-TATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATTTGATTTGGGCATAATGGGCCAGT-TACAGGTGATT
* *
54996101 TGGGCCTAAAGGGGCCATATGAATTTGA-TTGGGCATAATGGGCCAGTTACAGGT
1 TGGGCCT-AACGGGCCATATAAATTTGATTTGGGCATAATGGGCCAGTTACAGGT
54996155 ATGTGAATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
58 30 0.62
59 18 0.38
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATTTGATTTGGGCATAATGGGCCAGTTACAGGTGATT
Found at i:54999392 original size:40 final size:40
Alignment explanation
Indices: 54999333--54999474 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
54999323 AAATTGAATG
* * *
54999333 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
54999373 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
54999413 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
54999453 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
54999475 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:54999475 original size:40 final size:39
Alignment explanation
Indices: 54999372--54999500 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
54999362 TGCTGGAAAT
* * *
54999372 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
54999412 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
54999452 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
54999492 TATATCCGG
1 TATATCCGG
54999501 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:55007321 original size:29 final size:29
Alignment explanation
Indices: 55007260--55007322 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
55007250 GACGAGATTG
** * ***
55007260 GCACTAAGTGTGCGTGCTGGAAATATTTG
1 GCACTAAGTGTGCAAGCTGGAAAAATACA
55007289 GCACTAAGTGTGCAAGCTGGAAAAATACA
1 GCACTAAGTGTGCAAGCTGGAAAAATACA
55007318 GCACT
1 GCACT
55007323 GGGTGTGCGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (29 bp):
GCACTAAGTGTGCAAGCTGGAAAAATACA
Found at i:55031803 original size:27 final size:27
Alignment explanation
Indices: 55031765--55031827 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
55031755 TGTACATGTA
55031765 TGCTCACACAAGCTGTGAAAATGGGCT
1 TGCTCACACAAGCTGTGAAAATGGGCT
55031792 TGCTCACACAAGCTGTGAAAATGGGCT
1 TGCTCACACAAGCTGTGAAAATGGGCT
*
55031819 TACTCACAC
1 TGCTCACAC
55031828 GAGTTGTGGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (27 bp):
TGCTCACACAAGCTGTGAAAATGGGCT
Found at i:55035100 original size:5 final size:5
Alignment explanation
Indices: 55035077--55035115 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
55035067 CATGCCTAGT
*
55035077 TTTTC -TTTC -TTTC TCTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC T
55035116 ACTTTTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 8 0.26
5 23 0.74
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTC
Found at i:55035100 original size:18 final size:18
Alignment explanation
Indices: 55035077--55035111 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
55035067 CATGCCTAGT
55035077 TTTTC-TTTCTTTCTCTTC
1 TTTTCTTTTCTTT-TCTTC
55035095 TTTTCTTTTCTTTTCTT
1 TTTTCTTTTCTTTTCTT
55035112 TTCTACTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTCTTTTCTTTTCTTC
Found at i:55035104 original size:23 final size:23
Alignment explanation
Indices: 55035077--55035126 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
55035067 CATGCCTAGT
*
55035077 TTTTC-TTTCTTTCTCTTCTTTTC
1 TTTTCTTTTCTTT-TCTACTTTTC
*
55035100 TTTTCTTTTCTTTTCTACTTTTT
1 TTTTCTTTTCTTTTCTACTTTTC
55035123 TTTT
1 TTTT
55035127 TAAGAAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 17 0.71
24 7 0.29
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTTCTTTTCTTTTCTACTTTTC
Found at i:55035396 original size:28 final size:30
Alignment explanation
Indices: 55035356--55035411 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
55035346 TTTATAATTA
* *
55035356 ATTTTAATTTTTATAAT-ATAAAAATAAAT
1 ATTTTAATATTTAAAATAATAAAAATAAAT
55035385 ATTTT-ATATTTAAAATAATAAAAATAA
1 ATTTTAATATTTAAAATAATAAAAATAA
55035412 CTTAAAAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.38
29 15 0.62
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (30 bp):
ATTTTAATATTTAAAATAATAAAAATAAAT
Found at i:55039619 original size:43 final size:42
Alignment explanation
Indices: 55039524--55039674 Score: 211
Period size: 43 Copynumber: 3.6 Consensus size: 42
55039514 ATCTGTTCTT
* * *
55039524 GTGTAAGACAACGTCTGGGACATTAGCATCAATA--GATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCAATATTGATTAC
55039564 GTGTAAGACCATGTCTGGGACATTGGCATCAATATGTGATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCAATAT-TGATTAC
55039607 GTGTAAGACCATGTCTGGGACATTGGCATC-ATATTTGATT-C
1 GTGTAAGACCATGTCTGGGACATTGGCATCAATA-TTGATTAC
* *
55039648 GTGTAAGACCCTGTCTGGGACAATGGC
1 GTGTAAGACCATGTCTGGGACATTGGC
55039675 TGTAACACCC
Statistics
Matches: 102, Mismatches: 5, Indels: 7
0.89 0.04 0.06
Matches are distributed among these distances:
40 31 0.30
41 26 0.25
42 8 0.08
43 37 0.36
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCAATATTGATTAC
Found at i:55040414 original size:40 final size:40
Alignment explanation
Indices: 55040370--55040445 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
55040360 ACACAACATG
*
55040370 TGGGGATAAAATCAACCCACCCATCCCTACACACCAAATA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAAATA
* * *
55040410 TGGGGATAAAATCGACCCATCTAACCCTACACACCA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCA
55040446 TAAAATACCG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.38, C:0.34, G:0.12, T:0.16
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCCAACCCTACACACCAAATA
Found at i:55040896 original size:17 final size:18
Alignment explanation
Indices: 55040865--55040898 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
55040855 TCTGTGGTTC
55040865 ACCTGTGTGGGCCCACAT
1 ACCTGTGTGGGCCCACAT
55040883 ACCTGTGT-GGCCCACA
1 ACCTGTGTGGGCCCACA
55040899 CGGCCCAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.18, C:0.35, G:0.26, T:0.21
Consensus pattern (18 bp):
ACCTGTGTGGGCCCACAT
Found at i:55044991 original size:18 final size:19
Alignment explanation
Indices: 55044963--55045006 Score: 74
Period size: 18 Copynumber: 2.4 Consensus size: 19
55044953 GAAAACATCT
55044963 GGAATGTCCTTCACCATTC
1 GGAATGTCCTTCACCATTC
55044982 GGAA-GTCCTTCACCATTC
1 GGAATGTCCTTCACCATTC
55045000 GG-ATGTC
1 GGAATGTC
55045007 TTTAACCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.04
18 19 0.79
19 4 0.17
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (19 bp):
GGAATGTCCTTCACCATTC
Found at i:55045014 original size:18 final size:18
Alignment explanation
Indices: 55044963--55045014 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
55044953 GAAAACATCT
*
55044963 GGAATGTCCTTCACCATTC
1 GGAA-GTCCTTAACCATTC
*
55044982 GGAAGTCCTTCACCATTC
1 GGAAGTCCTTAACCATTC
* *
55045000 GGATGTCTTTAACCA
1 GGAAGTCCTTAACCA
55045015 AAGAGTCTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 26 0.87
19 4 0.13
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.31
Consensus pattern (18 bp):
GGAAGTCCTTAACCATTC
Found at i:55049114 original size:46 final size:46
Alignment explanation
Indices: 55048947--55049120 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
55048937 GGTTGAGCAT
*
55048947 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * * * *
55048992 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
*
55049037 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* *
55049085 CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
55049121 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
42 5 0.05
44 4 0.04
45 27 0.25
46 34 0.32
47 27 0.25
48 5 0.05
50 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:55050056 original size:12 final size:12
Alignment explanation
Indices: 55050039--55050064 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
55050029 GTTGTGAATG
55050039 TGATAATTGAAA
1 TGATAATTGAAA
55050051 TGATAATTGAAA
1 TGATAATTGAAA
55050063 TG
1 TG
55050065 TGAACTATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.00, G:0.19, T:0.35
Consensus pattern (12 bp):
TGATAATTGAAA
Found at i:55050546 original size:15 final size:15
Alignment explanation
Indices: 55050526--55050581 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
55050516 GTATCTTGGG
55050526 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
55050541 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
55050556 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
55050571 TTTCTTTATTC
1 TTTCTTTATTC
55050582 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:55053121 original size:46 final size:46
Alignment explanation
Indices: 55052962--55053127 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 46
55052952 GATTTGGCAT
*
55052962 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *** * * * *
55053007 TCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC
*
55053052 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
55053100 CCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC
55053128 TTATGGGCGG
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
44 2 0.02
45 28 0.29
46 38 0.39
47 27 0.28
48 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:55056667 original size:46 final size:45
Alignment explanation
Indices: 55056617--55056791 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
55056607 TGGTTGAGCA
55056617 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
55056663 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
55056709 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
55056755 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
55056792 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 98 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:55056771 original size:92 final size:92
Alignment explanation
Indices: 55056614--55056784 Score: 315
Period size: 92 Copynumber: 1.9 Consensus size: 92
55056604 GGATGGTTGA
* *
55056614 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
55056679 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
55056706 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
55056771 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
55056785 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:55065198 original size:46 final size:46
Alignment explanation
Indices: 55065148--55065323 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
55065138 TGGTTGAGCA
55065148 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
55065194 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
55065239 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
55065287 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
55065324 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 64 0.59
47 29 0.27
48 3 0.03
50 2 0.02
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:55065304 original size:93 final size:93
Alignment explanation
Indices: 55065145--55065315 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
55065135 GGATGGTTGA
* * *
55065145 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
55065210 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
55065238 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
55065303 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
55065316 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:55067161 original size:29 final size:29
Alignment explanation
Indices: 55067129--55067212 Score: 150
Period size: 29 Copynumber: 2.9 Consensus size: 29
55067119 CTTCGAGCTC
*
55067129 GCACACTTAGTACCATATATTTCCAGAAT
1 GCACACTTAGTGCCATATATTTCCAGAAT
*
55067158 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGAAT
55067187 GCACACTTAGTGCCATATATTTCCAG
1 GCACACTTAGTGCCATATATTTCCAG
55067213 TGCCATATAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGAAT
Found at i:55067162 original size:58 final size:58
Alignment explanation
Indices: 55067100--55067212 Score: 156
Period size: 58 Copynumber: 1.9 Consensus size: 58
55067090 ATTTAAGCCC
* *
55067100 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACTTAGTACCATATATTTCCAGAAT
1 GCACACATAGTGCCATACACTTCCAGCAT-GCACACTTAGTACCATATATTTCCAGAAT
* * * *
55067158 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAG
1 GCACACATAGTGCCATACACTTCCAGCATGCACACTTAGTACCATATATTTCCAG
55067213 TGCCATATAT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
58 47 0.98
59 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.28
Consensus pattern (58 bp):
GCACACATAGTGCCATACACTTCCAGCATGCACACTTAGTACCATATATTTCCAGAAT
Found at i:55067216 original size:16 final size:16
Alignment explanation
Indices: 55067195--55067228 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
55067185 ATGCACACTT
55067195 AGTGCCATATATTTCC
1 AGTGCCATATATTTCC
55067211 AGTGCCATATATTTCC
1 AGTGCCATATATTTCC
55067227 AG
1 AG
55067229 CATGCACACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (16 bp):
AGTGCCATATATTTCC
Found at i:55067230 original size:45 final size:45
Alignment explanation
Indices: 55067166--55067257 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
55067156 ATGCACACTT
55067166 AGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCC
1 AGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCC
55067211 AGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCC
1 AGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCC
55067256 AG
1 AG
55067258 CATGCACACT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (45 bp):
AGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCC
Found at i:55067253 original size:29 final size:29
Alignment explanation
Indices: 55067211--55067273 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
55067201 ATATATTTCC
55067211 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
55067240 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
55067269 AGTGC
1 AGTGC
55067274 TAATCTCGTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:55074621 original size:29 final size:29
Alignment explanation
Indices: 55074587--55074691 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 29
55074577 TACTCGATTT
* * *
55074587 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
55074616 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
55074645 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
55074674 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
55074692 TATTTCCAGC
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:55074692 original size:29 final size:29
Alignment explanation
Indices: 55074646--55074716 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
55074636 CTTCGAGCTC
55074646 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
55074675 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
55074704 GCACACTTAGTGC
1 GCACACTTAGTGC
55074717 TAATCTCGTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:55083883 original size:39 final size:39
Alignment explanation
Indices: 55083794--55083942 Score: 117
Period size: 40 Copynumber: 3.8 Consensus size: 39
55083784 ATCACGATTT
*
55083794 GCACAAATGCCTTCGGGTCTTAGCCC-GATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
55083833 GCACGAATGCCTT-GGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * * ** *
55083872 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
55083912 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
55083943 TCAATCAATT
Statistics
Matches: 88, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
37 1 0.01
38 16 0.18
39 28 0.32
40 42 0.48
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:55086296 original size:48 final size:48
Alignment explanation
Indices: 55086241--55086527 Score: 484
Period size: 48 Copynumber: 6.0 Consensus size: 48
55086231 TATATATGTA
*
55086241 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
* *
55086289 TGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
*
55086337 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
** *
55086385 TGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
* *
55086433 TGGTAAATCCGAATGGCTAATGTGAAATAGGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
*
55086481 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATGTGTATAT
1 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
55086528 ATTGTGGCCG
Statistics
Matches: 221, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 221 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
Found at i:55086710 original size:37 final size:37
Alignment explanation
Indices: 55086660--55086806 Score: 249
Period size: 37 Copynumber: 4.0 Consensus size: 37
55086650 GGAAATATAT
55086660 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
55086697 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
55086734 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
55086771 TTCGGGTAAGACCCGATAACTACGTGTGGGGATTAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
55086807 TCGAGCTAAA
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:55088763 original size:43 final size:43
Alignment explanation
Indices: 55088503--55088748 Score: 438
Period size: 43 Copynumber: 5.7 Consensus size: 43
55088493 TGAAACTCGG
* * *
55088503 GATATGTATTTGGGTCTTCGTGCCTTGCAGGCTTCGTGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
* *
55088546 GATATGTATTCGGGTCTTCGTGCCTAGCAAGCTTCGTGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
55088589 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
55088632 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
55088675 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
*
55088718 GATATGTATTCGGGTCTTCGTGCCTAGCAGG
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGG
55088749 ATTAATGCCT
Statistics
Matches: 197, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 197 1.00
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
Found at i:55089020 original size:29 final size:29
Alignment explanation
Indices: 55088920--55089078 Score: 96
Period size: 29 Copynumber: 5.5 Consensus size: 29
55088910 ATGATTAGAG
* * *
55088920 GCACTGTGTGTGCAAATTCCGTTAACCGA
1 GCACTATGTGTGCGAATTCCATTAACCGA
* **
55088949 GCACTATGTGTGCGAGA-T-CAGTAATTGA
1 GCACTATGTGTGCGA-ATTCCATTAACCGA
* *
55088977 GGCACTGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCGAATTCCATTAACCGA
* ** **
55089007 GCATTATGTGTGCGAGATT--GGTAATTGA
1 GCACTATGTGTGCGA-ATTCCATTAACCGA
* *
55089035 GGCACTGTGTGTGCGAGTT-C-TTCAACCGA
1 -GCACTATGTGTGCGAATTCCATT-AACCGA
55089064 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
55089079 GATCAGTCAG
Statistics
Matches: 98, Mismatches: 24, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
28 29 0.30
29 59 0.60
30 10 0.10
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCGAATTCCATTAACCGA
Done.