Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 2 of 427
Found at i:442904 original size:74 final size:75
Alignment explanation
Indices: 442777--442936 Score: 225
Period size: 74 Copynumber: 2.1 Consensus size: 75
442767 AATTTCCGTT
* *
442777 TTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA
1 TTTCAATTTCTG-CTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAAA
*
442841 CGCTGAGGTAA
65 CGCCGAGGTAA
* *
442852 TTTCAATTTCTG-TTATCAAAAAAATCAACTCGTATTGCGAGAGGCGATTTGAGCCTCAGGTCAA
1 TTTCAATTTCTGCTT-TCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CAA
*
442916 ACGCCGAGGTAT
64 ACGCCGAGGTAA
442928 TTTCAATTT
1 TTTCAATTT
442937 TCGTTTTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
73 2 0.03
74 42 0.55
75 12 0.16
76 20 0.26
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (75 bp):
TTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAAAC
GCCGAGGTAA
Found at i:442976 original size:165 final size:163
Alignment explanation
Indices: 442637--443099 Score: 592
Period size: 165 Copynumber: 2.8 Consensus size: 163
442627 TTTGTTTTTC
* * * *
442637 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
* ** ** * *
442702 GTGTT--TTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTT
66 GTCTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACGCCGAGGTATTT
442765 TCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
131 TCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
*
442798 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
* *
442863 GT-TATCAAAAAAATCAACTCGTATTGCGAGAGGCGATTTGAGCCTCAGGTCAAACGCCGAGGTA
66 GTCT-TCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTC--ACGCCGAGGTA
* *
442927 TTTTCAATTTTCGTTTTTCAATTTCTGTCTTTCAAA
128 TTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
* * *
442963 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
** * * *
443027 TCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCTTCAGATCACACACTGA
63 TCTGTC-TTC-AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACGC-C-GA
443092 GGTATTTT
124 GGTATTTT
443100 TTCAATTTAT
Statistics
Matches: 263, Mismatches: 26, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
160 1 0.00
161 63 0.24
163 37 0.14
164 2 0.01
165 80 0.30
167 27 0.10
168 3 0.01
169 50 0.19
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (163 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTCTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACGCCGAGGTATTT
TCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
Found at i:443020 original size:91 final size:90
Alignment explanation
Indices: 442852--443027 Score: 246
Period size: 91 Copynumber: 1.9 Consensus size: 90
442842 GCTGAGGTAA
* *
442852 TTTCAATTTCTGTTATCAAAAAAATCAACTCGTATTGCGAGAGGCGATTTGAGCCTCAGGTCAAA
1 TTTCAATTTCTGTTATCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCAAA
*
442917 CGCCGAGGTATTTTCAATTTTCGTT
66 CGCCGAGCTATTTTCAATTTTCGTT
* * *
442942 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCA
1 TTTCAATTTCTGT-TATCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCA
** *
443006 CGCGCTGAGCTATTTTCAATTT
64 AACGCCGAGCTATTTTCAATTT
443028 CTGTCTTTCA
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
90 15 0.20
91 60 0.80
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (90 bp):
TTTCAATTTCTGTTATCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCAAA
CGCCGAGCTATTTTCAATTTTCGTT
Found at i:443071 original size:78 final size:78
Alignment explanation
Indices: 442941--443537 Score: 341
Period size: 88 Copynumber: 7.2 Consensus size: 78
442931 CAATTTTCGT
*
442941 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
*
443005 ACGCGCTGAGCTA
66 ACACGCTGAGCTA
* * * *
443018 TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAG-CTTCAGAT
1 TTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCT
* *
443082 CACACACTGAGGTA
65 CACACGCTGAGCTA
* * * * * * *
443096 TTTTTTCAATTTATATTTTTC-AAAAATATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGG
1 --TTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
* *
443160 TCACATG-TCGAGGTA
64 TCACACGCT-GAGCTA
** * *
443175 TTTTCAAAATCTGTTTTTCAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTTTTTCA-A---------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** **
443240 AACTTGGCTCACGTGCTGAGCTA
56 GCCTTGGCTCACACGCTGAGCTA
*
443263 TTTTCAATTTCTGTTTTTTTTTCTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCT
1 TTTTCAATTTCTG------TTT-TTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC-
* ** * * *
443328 TTTTAATTTCTGCGAGA-GTTGAGTTGA
58 --CT--TGGCT-C-ACACGCTGAGCT-A
* * ****
443355 GTCTTTTAATTTCTGTTTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAA
1 -T-TTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
** *
443417 TCACA-TATCGAGGTA
64 TCACACGCT-GAGCTA
**
443432 TTTTCAAAATCTGCCTTTCAAGTT-AAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTG--TTT----TTCAA-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
443496 AGCCTTGGCTCACGCGCTGAGCTA
55 AGCCTTGGCTCACACGCTGAGCTA
443520 TTTTCAATTTCTGTTTTT
1 TTTTCAATTTCTGTTTTT
443538 AATGCCTGTT
Statistics
Matches: 397, Mismatches: 72, Indels: 97
0.70 0.13 0.17
Matches are distributed among these distances:
75 9 0.02
76 1 0.00
77 44 0.11
78 54 0.14
79 46 0.12
80 18 0.05
81 3 0.01
82 2 0.01
84 33 0.08
85 31 0.08
86 3 0.01
87 3 0.01
88 116 0.29
89 2 0.01
90 3 0.01
91 7 0.02
92 2 0.01
93 1 0.00
94 15 0.04
95 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (78 bp):
TTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
ACACGCTGAGCTA
Found at i:443164 original size:79 final size:78
Alignment explanation
Indices: 442940--443164 Score: 290
Period size: 78 Copynumber: 2.9 Consensus size: 78
442930 TCAATTTTCG
* *
442940 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATC
* *
443005 ACGCGCTGAGCTA
66 ACACACTGAGCTA
* * *
443018 -TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCTTCAGAT
1 TTTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGAT
*
443082 CACACACTGAGGTA
65 CACACACTGAGCTA
* * * * * * *
443096 TTTTTTCAATTTATATTTTTCAAAAATATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 -TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGAT
443161 CACA
65 CACA
443165 TGTCGAGGTA
Statistics
Matches: 126, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
77 19 0.15
78 50 0.40
79 41 0.33
80 16 0.13
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (78 bp):
TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATC
ACACACTGAGCTA
Found at i:443173 original size:79 final size:78
Alignment explanation
Indices: 442940--443178 Score: 277
Period size: 79 Copynumber: 3.0 Consensus size: 78
442930 TCAATTTTCG
* *
442940 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATC
* *
443005 ACGCGCTGAGCTA-
66 AC-AGCTGAGGTAT
* * *
443018 -TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCTTCAGAT
1 TTTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGAT
*
443082 CACACACTGAGGTAT
65 CACA-GCTGAGGTAT
* * * * * * *
443097 TTTTTCAATTTATATTTTTCAAAAATATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTC
1 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATC
443162 ACATG-TCGAGGTAT
66 ACA-GCT-GAGGTAT
443176 TTT
1 TTT
443179 CAAAATCTGT
Statistics
Matches: 136, Mismatches: 20, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
77 19 0.14
78 50 0.37
79 51 0.38
80 16 0.12
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (78 bp):
TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATC
ACAGCTGAGGTAT
Found at i:443344 original size:30 final size:30
Alignment explanation
Indices: 443308--443369 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
443298 CAACTCATAT
443308 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
443338 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
443368 TG
1 TG
443370 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:443485 original size:257 final size:251
Alignment explanation
Indices: 442790--443537 Score: 737
Period size: 257 Copynumber: 3.0 Consensus size: 251
442780 CAATTTCTGC
* * * *
442790 CTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTA-
1 CTTTCAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCTTCAGATCACACACTGAGGTAT
* * * * * ** * * * *
442851 -ATTTCAATTTCT-GTTATCAAAAAAATCAACTCGTATTGCGAGAGGCGATTTGAGCCT-CAGGT
66 CTTTTCAATTTATATTTTTCAAAAATATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCA-AT
* *** * * ** **
442913 CAAACGCCGAGGTATTTTC-AATTTTCGTTTTTCA-ATTTCTGTCTTTCAAAAAAATCAACTCAT
130 CACATATCGAGGTATTTTCAAAATCT-GCCTTTCAGA-TTAAGT-TTTC-AAAAAATCAACTCAT
442976 ATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTG-----T
191 ATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTT
443032 CTTTCAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCTTCAGATCACACACTGAGGTAT
1 CTTTCAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCTTCAGATCACACACTGAGGTAT
* * * ***
443097 TTTTTCAATTTATATTTTTCAAAAATATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTC
66 CTTTTCAATTTATATTTTTCAAAAATATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCAATC
* ** **
443162 ACATGTCGAGGTATTTTCAAAATCTGTTTTTCAGATTCTGTTTTC-AAAAATCAACTCATATTGC
131 ACATATCGAGGTATTTTCAAAATCTGCCTTTCAGATTAAGTTTTCAAAAAATCAACTCATATTGC
* ** *
443226 GAGAAGTGAGTTGAAACTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTTTTTT
196 GAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTG-TTTTTT
* * * * * * *
443283 TTCTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGT
1 CT-TTCAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGC--TTCAGA--TC-AC-ACA-C
* * * *
443347 TGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAA-ATCAACTCATATTGCGAGAGGTGAGTTGA
58 TGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAATATCAACTCACATTGCGAGAGGTGAGTTGA
443409 ACCTCCAATCACATATCGAGGTATTTTCAAAATCTGCCTTTCA-AGTTAAG-TTTCAAAAAATCA
121 ACCTCCAATCACATATCGAGGTATTTTCAAAATCTGCCTTTCAGA-TTAAGTTTTCAAAAAATCA
443472 ACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTT
185 ACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTT
443537 T
250 T
443538 AATGCCTGTT
Statistics
Matches: 428, Mismatches: 51, Indels: 40
0.82 0.10 0.08
Matches are distributed among these distances:
242 5 0.01
243 40 0.09
245 77 0.18
247 14 0.03
248 69 0.16
249 5 0.01
251 2 0.00
252 39 0.09
253 1 0.00
254 3 0.01
255 2 0.00
256 11 0.03
257 133 0.31
258 9 0.02
259 13 0.03
260 5 0.01
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (251 bp):
CTTTCAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCTTCAGATCACACACTGAGGTAT
CTTTTCAATTTATATTTTTCAAAAATATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCAATC
ACATATCGAGGTATTTTCAAAATCTGCCTTTCAGATTAAGTTTTCAAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTT
Found at i:444214 original size:17 final size:17
Alignment explanation
Indices: 444192--444251 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
444182 AAGCCCCCCC
444192 AAAAAAAACCTAACCCA
1 AAAAAAAACCTAACCCA
*** ***
444209 AAAAAAAAAAGAAGAAA
1 AAAAAAAACCTAACCCA
444226 AAAGAAAAACCTAACCCA
1 AAA-AAAAACCTAACCCA
444244 AAAAAAAA
1 AAAAAAAA
444252 AGAAGAAAAA
Statistics
Matches: 30, Mismatches: 12, Indels: 2
0.68 0.27 0.05
Matches are distributed among these distances:
17 19 0.63
18 11 0.37
ACGTcount: A:0.75, C:0.17, G:0.05, T:0.03
Consensus pattern (17 bp):
AAAAAAAACCTAACCCA
Found at i:444215 original size:18 final size:18
Alignment explanation
Indices: 444192--444252 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
444182 AAGCCCCCCC
444192 AAAAAAAACCTAACCCAA
1 AAAAAAAACCTAACCCAA
** **
444210 AAAAAAAA-AGAA-GAAA
1 AAAAAAAACCTAACCCAA
444226 AAAGAAAAACCTAACCCAA
1 AAA-AAAAACCTAACCCAA
444245 AAAAAAAA
1 AAAAAAAA
444253 GAAGAAAAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
16 5 0.16
17 7 0.22
18 15 0.47
19 5 0.16
ACGTcount: A:0.75, C:0.16, G:0.05, T:0.03
Consensus pattern (18 bp):
AAAAAAAACCTAACCCAA
Found at i:444238 original size:35 final size:35
Alignment explanation
Indices: 444195--444283 Score: 157
Period size: 34 Copynumber: 2.6 Consensus size: 35
444185 CCCCCCCAAA
444195 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
444230 AAAAACCTAACCC-AAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
444264 AAAAACCTAA--CAAAAAAAAA
1 AAAAACCTAACCCAAAAAAAAA
444284 CTAAAAAAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
32 1 0.02
33 8 0.15
34 31 0.58
35 13 0.25
ACGTcount: A:0.75, C:0.15, G:0.07, T:0.03
Consensus pattern (35 bp):
AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
Found at i:446367 original size:15 final size:16
Alignment explanation
Indices: 446327--446372 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
446317 AACATAGATT
*
446327 AATATATTTAAATTTA
1 AATATATTTAATTTTA
* *
446343 AAT-TTTTTTATTTTA
1 AATATATTTAATTTTA
446358 AATATATTTAATTTT
1 AATATATTTAATTTT
446373 TTAATATTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
AATATATTTAATTTTA
Found at i:447540 original size:30 final size:28
Alignment explanation
Indices: 447505--447570 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 28
447495 CAATATATAA
*
447505 TTTTAT-TTTCAAGAATTTAATTTATCAATT
1 TTTTATATTTCAA-AATTTAAATT-T-AATT
*
447535 TTTTATATTTTAAAATTTAAATTTAATT
1 TTTTATATTTCAAAATTTAAATTTAATT
447563 TTTT-TATT
1 TTTTATATT
447571 AATTTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
27 4 0.12
28 8 0.24
29 1 0.03
30 15 0.45
31 5 0.15
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (28 bp):
TTTTATATTTCAAAATTTAAATTTAATT
Found at i:448639 original size:24 final size:24
Alignment explanation
Indices: 448604--448657 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
448594 GTTGAGAAAC
* *
448604 ATACATGCATATATATATGTATGT
1 ATACATGCATATATATATATATAT
* * *
448628 ATACATGTATATGTATGTATATAT
1 ATACATGCATATATATATATATAT
448652 ATACAT
1 ATACAT
448658 ATGAGGGGCC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (24 bp):
ATACATGCATATATATATATATAT
Found at i:449908 original size:219 final size:220
Alignment explanation
Indices: 449540--450145 Score: 886
Period size: 219 Copynumber: 2.8 Consensus size: 220
449530 ACACAATATA
* * * * *
449540 TTGTTAAGAACTAATATCAGACATAACAATATTCACACACAAAAAGACACCGGAATATCAACAAT
1 TTGTTAAGAACTAATATCAGAC--AACAAGATT--CACACAAAAATA-ACCGGCATATCGACAAC
* * * * * *
449605 GGATAGG-AGCAACATTTGACCCTCAGAACCTTGACGCATAAAAACAA----ATGGATTAAACGA
61 GGAT-GGAAGCAGCATTTGACTCTCAGAACCTTGATGCATAAAATCAATTCTAAGGACTAAACGA
*
449665 GTCTTTTCTTTCACACGACGCTAGAGAAACGAAAGTACTATACACAATAAGTACGATGAAGGTTC
125 GTCTTTTCTTTCACACGACGCTAGAGAAACGAAAGTACCATACACAATAAGTACGATGAAGGTTC
449730 GGTTTAACGATGAGGGAGCAAACAAGACATC
190 GGTTTAACGATGAGGGAGCAAACAAGACATC
*
449761 TTGTTAAGAACTAATATCAGAC-ACAAGATTCACACAAAAATAACCGGCATATTGACAACGGATG
1 TTGTTAAGAACTAATATCAGACAACAAGATTCACACAAAAATAACCGGCATATCGACAACGGATG
**
449825 GAAGCAGCATTTGACTCTCAGAACCTCAATGCATAAAATCAATTCTAAGGACTAAACGAGTCTTT
66 GAAGCAGCATTTGACTCTCAGAACCTTGATGCATAAAATCAATTCTAAGGACTAAACGAGTCTTT
* *
449890 GCTTTCACACGACGCTAGAGAAACAAAAGTACCATACACAATAAGTACGATGAAGGTTCGGTTTA
131 TCTTTCACACGACGCTAGAGAAACGAAAGTACCATACACAATAAGTACGATGAAGGTTCGGTTTA
*
449955 ACGATGAGGGAGCAAACACGACATC
196 ACGATGAGGGAGCAAACAAGACATC
*
449980 TTGTTAAGAACTAATATCAGACACAACAAGATTCACACAAAAATAACCTGCATATCGACAACGGA
1 TTGTTAAGAACTAATATCAG--ACAACAAGATTCACACAAAAATAACCGGCATATCGACAACGGA
* *
450045 TGGAAGCAGCATTTGACTCTCAGAA-CTTGATGCATAAAATCGATTCTAAGGACTAAATGAGTCT
64 TGGAAGCAGCATTTGACTCTCAGAACCTTGATGCATAAAATCAATTCTAAGGACTAAACGAGTCT
*
450109 TTTCTTTCACAC-AAGCTAGAGAAACGAAAGTACCATA
129 TTTCTTTCACACGACGCTAGAGAAACGAAAGTACCATA
450146 TACGATATAT
Statistics
Matches: 350, Mismatches: 27, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
214 2 0.01
215 51 0.15
216 11 0.03
218 7 0.02
219 123 0.35
220 23 0.07
221 70 0.20
222 63 0.18
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (220 bp):
TTGTTAAGAACTAATATCAGACAACAAGATTCACACAAAAATAACCGGCATATCGACAACGGATG
GAAGCAGCATTTGACTCTCAGAACCTTGATGCATAAAATCAATTCTAAGGACTAAACGAGTCTTT
TCTTTCACACGACGCTAGAGAAACGAAAGTACCATACACAATAAGTACGATGAAGGTTCGGTTTA
ACGATGAGGGAGCAAACAAGACATC
Found at i:452730 original size:21 final size:21
Alignment explanation
Indices: 452706--452746 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
452696 AACTTTATGT
452706 AAATATTAAAT-TTATATAATA
1 AAAT-TTAAATGTTATATAATA
*
452727 AAATTTACATGTTATATAAT
1 AAATTTAAATGTTATATAAT
452747 TTATATCACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
AAATTTAAATGTTATATAATA
Found at i:457529 original size:17 final size:17
Alignment explanation
Indices: 457486--457540 Score: 60
Period size: 16 Copynumber: 3.2 Consensus size: 17
457476 GTTAGTAATT
457486 TTTATAATTATTT-TAAA
1 TTTA-AATTATTTGTAAA
*
457503 ATTAAATTATTTGT-AA
1 TTTAAATTATTTGTAAA
457519 TTTAGAATTATTTGATAAA
1 TTTA-AATTATTTG-TAAA
457538 TTT
1 TTT
457541 TTGTGTTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
16 13 0.41
17 13 0.41
18 1 0.03
19 5 0.16
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
TTTAAATTATTTGTAAA
Found at i:457598 original size:60 final size:60
Alignment explanation
Indices: 457490--457607 Score: 154
Period size: 60 Copynumber: 2.0 Consensus size: 60
457480 GTAATTTTTA
*
457490 TAATTATTTTAAAATTAAATTATTTGTAATTTAGAATTATTTGATAAATT-TTTGTGTTAG
1 TAATTATTTTAAAATTAAATTATTAGTAATTTAGAATTATTTGATAAATTATTT-TGTTAG
*
457550 TAATTATTTTAAAATT-AATATATTAGTAATTTA-AGATTATATT-TTAAATTATTTTGTT
1 TAATTATTTTAAAATTAAAT-TATTAGTAATTTAGA-ATTAT-TTGATAAATTATTTTGTT
457608 TAGTTTAATA
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
59 4 0.08
60 43 0.83
61 5 0.10
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (60 bp):
TAATTATTTTAAAATTAAATTATTAGTAATTTAGAATTATTTGATAAATTATTTTGTTAG
Found at i:459897 original size:20 final size:21
Alignment explanation
Indices: 459857--459913 Score: 93
Period size: 20 Copynumber: 2.9 Consensus size: 21
459847 GGTTTTGTAT
459857 TGTAAATTACTTTATTTTTTA
1 TGTAAATTACTTTATTTTTTA
459878 TGTAAATTACTTTA-TTTTTA
1 TGTAAATTACTTTATTTTTTA
459898 TGTAAATTA-TTT-TTTT
1 TGTAAATTACTTTATTTT
459914 GCATTATATT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.17
20 15 0.43
21 14 0.40
ACGTcount: A:0.28, C:0.04, G:0.05, T:0.63
Consensus pattern (21 bp):
TGTAAATTACTTTATTTTTTA
Found at i:462201 original size:4 final size:4
Alignment explanation
Indices: 462192--462282 Score: 83
Period size: 4 Copynumber: 22.2 Consensus size: 4
462182 TTCCCTTTTC
* * * *
462192 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTC ACGTT TGGTC
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TC-TT T-CTT
* *** *
462242 TCTG TAAC TCTT TCTA TCTT TCTT TCTT TCTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT T
462283 TTAACTTACT
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
4 66 0.96
5 3 0.04
ACGTcount: A:0.04, C:0.25, G:0.04, T:0.66
Consensus pattern (4 bp):
TCTT
Found at i:465465 original size:23 final size:23
Alignment explanation
Indices: 465428--465481 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
465418 TACCTTGTTT
*
465428 TTCTTCTTCTTTTCCTTTCTTTCC
1 TTCTTC-TCTTTTCCTTTCTTCCC
465452 TTCTTCTCTTTTCCTTTCTTCCC
1 TTCTTCTCTTTTCCTTTCTTCCC
465475 TTCTTCT
1 TTCTTCT
465482 TTCTCTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 23 0.79
24 6 0.21
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (23 bp):
TTCTTCTCTTTTCCTTTCTTCCC
Found at i:466296 original size:17 final size:17
Alignment explanation
Indices: 466274--466306 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
466264 TCTTCTTTCT
466274 TTCTTCACTGCTTCACA
1 TTCTTCACTGCTTCACA
*
466291 TTCTTCATTGCTTCAC
1 TTCTTCACTGCTTCAC
466307 TGCACGGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.33, G:0.06, T:0.45
Consensus pattern (17 bp):
TTCTTCACTGCTTCACA
Found at i:467247 original size:29 final size:29
Alignment explanation
Indices: 467201--467263 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
467191 TTAAGAAGTC
*
467201 TAATTAAAATTTTCAAAAATTT-GAGGGTT
1 TAATTAAAATTCTCAAAAATTTGGA-GGTT
*
467230 TAATTAAAATATCT-AAAATTTTGGAGGTT
1 TAATTAAAAT-TCTCAAAAATTTGGAGGTT
467259 TAATT
1 TAATT
467264 TTTCAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.43
Consensus pattern (29 bp):
TAATTAAAATTCTCAAAAATTTGGAGGTT
Found at i:467611 original size:17 final size:17
Alignment explanation
Indices: 467589--467637 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
467579 TCATATTTAA
467589 TATTTTTAAAAATAGAT
1 TATTTTTAAAAATAGAT
*
467606 TATTTTCT-AAAACA-A-
1 TATTTT-TAAAAATAGAT
*
467621 TATTTTTAATAATAGAT
1 TATTTTTAAAAATAGAT
467638 AAACTCAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 8
0.69 0.08 0.22
Matches are distributed among these distances:
14 1 0.04
15 10 0.40
16 2 0.08
17 11 0.44
18 1 0.04
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (17 bp):
TATTTTTAAAAATAGAT
Found at i:481236 original size:2 final size:2
Alignment explanation
Indices: 481225--481265 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
481215 TATTGGTTAG
481225 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
481266 TACTATTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:483716 original size:17 final size:17
Alignment explanation
Indices: 483694--483731 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
483684 CAGTTTATCC
483694 TAATTCTTTTATTCCAG
1 TAATTCTTTTATTCCAG
483711 TAATTCTTTTATTCCAG
1 TAATTCTTTTATTCCAG
483728 TAAT
1 TAAT
483732 AAGGTATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.26, C:0.16, G:0.05, T:0.53
Consensus pattern (17 bp):
TAATTCTTTTATTCCAG
Found at i:484313 original size:2 final size:2
Alignment explanation
Indices: 484306--484332 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
484296 GAAAAGTAGG
484306 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
484333 TCAACAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:487863 original size:24 final size:24
Alignment explanation
Indices: 487836--487885 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
487826 TGAAGAGGTG
487836 AACAACGGTTAACACGGTCAAATT
1 AACAACGGTTAACACGGTCAAATT
* *
487860 AACAACGGTTAATACGGTCAGATT
1 AACAACGGTTAACACGGTCAAATT
487884 AA
1 AA
487886 TTTTTTAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (24 bp):
AACAACGGTTAACACGGTCAAATT
Found at i:488457 original size:32 final size:29
Alignment explanation
Indices: 488421--488487 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
488411 TTTAAAGTTT
* *
488421 TAATTATGCCTCTTAAAATTTTTAAAAAATTC
1 TAATTAAGCCTC-T-AAAGTTTT-AAAAATTC
*
488453 TAATTAAGTCTCTAAAGTTTTAAAAATTC
1 TAATTAAGCCTCTAAAGTTTTAAAAATTC
488482 TAATTA
1 TAATTA
488488 GATCTTTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 14 0.44
30 7 0.22
31 1 0.03
32 10 0.31
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.43
Consensus pattern (29 bp):
TAATTAAGCCTCTAAAGTTTTAAAAATTC
Found at i:497777 original size:10 final size:10
Alignment explanation
Indices: 497762--497789 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
497752 AAAAGAGAGT
497762 TTAATTTTCA
1 TTAATTTTCA
497772 TTAATTTTCA
1 TTAATTTTCA
497782 TTAATTTT
1 TTAATTTT
497790 TTTAAATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (10 bp):
TTAATTTTCA
Found at i:500152 original size:30 final size:30
Alignment explanation
Indices: 500118--500220 Score: 111
Period size: 29 Copynumber: 3.4 Consensus size: 30
500108 TTCTTCCTTG
*
500118 AAATTTTTTAAAAATTTTAATTAGACCTCT
1 AAATTTTTTAAAAATTTTAATTAAACCTCT
* * * *
500148 AAA-TTTTTAAAAATTTTCATTATATCTTT
1 AAATTTTTTAAAAATTTTAATTAAACCTCT
*
500177 TAATTTTTT-AAAATTTTAATTAAACTCTCTT
1 AAATTTTTTAAAAATTTTAATTAAAC-CTC-T
*
500208 AAAATTTTTAAAA
1 AAATTTTTTAAAA
500221 TTCACAAATT
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
29 37 0.64
30 10 0.17
31 8 0.14
32 3 0.05
ACGTcount: A:0.41, C:0.08, G:0.01, T:0.50
Consensus pattern (30 bp):
AAATTTTTTAAAAATTTTAATTAAACCTCT
Found at i:515995 original size:191 final size:190
Alignment explanation
Indices: 515648--516338 Score: 741
Period size: 191 Copynumber: 3.6 Consensus size: 190
515638 AATATAAAGC
* * * * * *
515648 AGGGTGCTTTAGACATTGAAAAACATTTCAGTAAAAAAGC--ATGAGTCACAAATTCACATAGCT
1 AGGGTGCTCTAGACATTG-AAAACATTTCATTATAAAAGCATATAAGTCACGAATTCACAT-CCT
* * ** * * * *
515711 ACTCATAAAGAAATTGGGTTCCAGGTTCTAAACATTCTTTTCTAGACGGTGTTACGTCAG-CATA
64 ACTCGTAAAGACATCAGTTTCCAGGTTCTAAACATTCTTTTCTAGAGGGTGTTACG-CCGTTATA
* * * * * *
515775 CAACGTTTTTCATTCATTCAAGCTCATAATATGCAGCAAAACTTGAATATGACTGCAATCAAA
128 CAACGTGTTTCATTCATTCAAGTTCATAATATGCAGCAGAACATGAATATGGCTTCAATCAAA
** * ** *
515838 AGGGTGAACTAGACACTGAAAACATTTCATTATAAAAGCATATGCGTCACGTATTCACATACCTA
1 AGGGTGCTCTAGACATTGAAAACATTTCATTATAAAAGCATATAAGTCACGAATTCACAT-CCTA
* * *
515903 CTCGTAAAGACATCATTTTCCAGGTTCTAAACATTCTTTTATATAGGGTGTTACGCCGTTATACA
65 CTCGTAAAGACATCAGTTTCCAGGTTCTAAACATTCTTTTCTAGAGGGTGTTACGCCGTTATACA
* * *
515968 ATGTGTTTCATTCATTCAAATTCATAATATGCAGCAGAACATGAAAATGGCTTCAATCAAA
130 ACGTGTTTCATTCATTCAAGTTCATAATATGCAGCAGAACATGAATATGGCTTCAATCAAA
* * * *
516029 AGGGGTGCTCTAGACATCGAAAACATTTCATTATAAATGCATGTAAGTCGC-AGATTCAC-TCTC
1 A-GGGTGCTCTAGACATTGAAAACATTTCATTATAAAAGCATATAAGTCACGA-ATTCACATC-C
* * *
516092 TGCTCGTAAAGACAT-TGATTTCTC-GGTTCTAAACATTCTTTTCTAGAGGGTGTTACGTC-TGT
63 TACTCGTAAAGACATCAG-TTTC-CAGGTTCTAAACATTCTTTTCTAGAGGGTGTTACGCCGT-T
* * * * *
516154 ATAGCAACATGCTTCATTCATTCAAGTTCATAATATGCAGCTGAACATGAATATGGTTTCGATCA
125 ATA-CAACGTGTTTCATTCATTCAAGTTCATAATATGCAGCAGAACATGAATATGGCTTCAATCA
516219 AA
189 AA
* * * * * *
516221 AGGATGCTCTAGACATTGGAAACATGTCATTATAAAAGCATACAAGTCATGAATTCACACTGCTA
1 AGGGTGCTCTAGACATTGAAAACATTTCATTATAAAAGCATATAAGTCACGAATTCACA-TCCTA
* * *
516286 CTCGTAAAGACATCAGTGTCTAGGTTCTAAACATTCTTTTCTAGAGAGTGTTA
65 CTCGTAAAGACATCAGTTTCCAGGTTCTAAACATTCTTTTCTAGAGGGTGTTA
516339 TGTTGGTATA
Statistics
Matches: 417, Mismatches: 69, Indels: 28
0.81 0.13 0.05
Matches are distributed among these distances:
189 19 0.05
190 18 0.04
191 226 0.54
192 152 0.36
193 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (190 bp):
AGGGTGCTCTAGACATTGAAAACATTTCATTATAAAAGCATATAAGTCACGAATTCACATCCTAC
TCGTAAAGACATCAGTTTCCAGGTTCTAAACATTCTTTTCTAGAGGGTGTTACGCCGTTATACAA
CGTGTTTCATTCATTCAAGTTCATAATATGCAGCAGAACATGAATATGGCTTCAATCAAA
Found at i:519293 original size:31 final size:31
Alignment explanation
Indices: 519235--519293 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
519225 GTTTTAATGG
* *
519235 TCAATTTGGTACTAAGTATTTGTTTTGGGTC
1 TCAATTTGGTACTAAGTATTGGCTTTGGGTC
519266 TCAATTTGGTACTTAAGT-TTGGCTTTGG
1 TCAATTTGGTAC-TAAGTATTGGCTTTGG
519294 TACCTAAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 20 0.80
32 5 0.20
ACGTcount: A:0.19, C:0.10, G:0.24, T:0.47
Consensus pattern (31 bp):
TCAATTTGGTACTAAGTATTGGCTTTGGGTC
Found at i:519528 original size:24 final size:25
Alignment explanation
Indices: 519483--519534 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
519473 CATTAAAGCC
* *
519483 AAACTTGGGTACCAAGTGGAAAA-A
1 AAACTTAGGTACCAAATGGAAAATA
519507 AAACTTAGGTACCAAAAT-GAAAATA
1 AAACTTAGGTACC-AAATGGAAAATA
519532 AAA
1 AAA
519535 ACCAAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.54, C:0.12, G:0.17, T:0.17
Consensus pattern (25 bp):
AAACTTAGGTACCAAATGGAAAATA
Found at i:520286 original size:31 final size:31
Alignment explanation
Indices: 520248--520315 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 31
520238 TACACTGGTA
520248 GTCACCCAACTATT-ACTAAATTTATTTTTTG
1 GTCACCCAACTATTCAC-AAATTTATTTTTTG
**
520279 GTCACCCAACTATTCGACATTTTTATTTTTTG
1 GTCACCCAACTATTC-ACAAATTTATTTTTTG
520311 GTCAC
1 GTCAC
520316 TAGCAGTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
31 14 0.42
32 17 0.52
33 2 0.06
ACGTcount: A:0.25, C:0.22, G:0.09, T:0.44
Consensus pattern (31 bp):
GTCACCCAACTATTCACAAATTTATTTTTTG
Found at i:531453 original size:13 final size:13
Alignment explanation
Indices: 531435--531472 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
531425 TTGTGGGAAG
531435 AAAATATAGAAAA-
1 AAAATATA-AAAAT
531448 AAAATATAAAAAT
1 AAAATATAAAAAT
*
531461 AAAAGATAAAAA
1 AAAATATAAAAA
531473 GGAGATTAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 4 0.17
13 19 0.83
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (13 bp):
AAAATATAAAAAT
Found at i:537265 original size:39 final size:39
Alignment explanation
Indices: 537212--537286 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
537202 AAATATGGTT
*
537212 TTAATTAATAATAAAACAAAGTGGCACGGGGGAGTGAGA
1 TTAATTAATAATAAAACAAAGTAGCACGGGGGAGTGAGA
*
537251 TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTG
1 TTAATTAATAATAAAACAAAGTAGCACGGGGGAGTG
537287 GGATCAGCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.44, C:0.07, G:0.27, T:0.23
Consensus pattern (39 bp):
TTAATTAATAATAAAACAAAGTAGCACGGGGGAGTGAGA
Found at i:537820 original size:24 final size:26
Alignment explanation
Indices: 537793--537841 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
537783 TGTATATACC
*
537793 ATGTAAATATTTTA-ATAT-TATATT
1 ATGTAAACATTTTATATATATATATT
*
537817 ATGTATACATTTTATATATATATAT
1 ATGTAAACATTTTATATATATATAT
537842 ATATATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.57
25 4 0.19
26 5 0.24
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (26 bp):
ATGTAAACATTTTATATATATATATT
Found at i:537836 original size:2 final size:2
Alignment explanation
Indices: 537829--537861 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
537819 GTATACATTT
537829 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
537862 CTTTTAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:538686 original size:134 final size:129
Alignment explanation
Indices: 538474--538813 Score: 326
Period size: 130 Copynumber: 2.6 Consensus size: 129
538464 GTAATTCGGG
* * * * * * *
538474 GAATCGTGCCCTATTGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAACAATTGAATAT-TCATTC
1 GAATCGTGCCCTATCGTGTTGGGTTGCAATTT-CCGTTTGCTCAAAATAATCGAATATCTCTTTA
* *** *
538538 G-GTGTTCCACTCATGTCTTT-TAAAAAATTTCATTAAAACAAAAGAGATGTTCGATATTTAGCA
65 GAAT-TT-CACTCATGT-TTTCTAAAAAAAAAC-TT---ACAAAAGAAATGTTCGATATTTAGCA
*
538601 ATTCATA
123 ATTCAGA
* *
538608 GAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTCTCTTTA
1 GAATCGTGCCCTATCGTGTTGGGTTGCAATTTC-CGTTTGCTCAAAATAATCGAATATCTCTTTA
* * * * * * *
538673 GAATTTCATTCATGTTTTCTAAAAAAAAACTTATAAAGGAAATGTTCGGTATTTAGCAGTTCGGG
65 GAATTTCACTCATGTTTTCTAAAAAAAAACTTACAAAAGAAATGTTCGATATTTAGCAATTCAGA
* * * **
538738 GAATAGTACCCTATCGTGTTGGGTTGCAATTTCCTATTTGCTCAAAATAATCGAATATCTCTTCG
1 GAATCGTGCCCTATCGTGTTGGGTTGCAATTTCC-GTTTGCTCAAAATAATCGAATATCTCTTTA
538803 GAATTTCACTC
65 GAATTTCACTC
538814 GTATCTTCCA
Statistics
Matches: 171, Mismatches: 30, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
129 1 0.01
130 91 0.53
133 6 0.04
134 65 0.38
135 7 0.04
136 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (129 bp):
GAATCGTGCCCTATCGTGTTGGGTTGCAATTTCCGTTTGCTCAAAATAATCGAATATCTCTTTAG
AATTTCACTCATGTTTTCTAAAAAAAAACTTACAAAAGAAATGTTCGATATTTAGCAATTCAGA
Found at i:540325 original size:6 final size:6
Alignment explanation
Indices: 540314--540344 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
540304 CGGTGGCAAA
540314 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T
540345 ACTGAAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTAT
Found at i:541964 original size:167 final size:166
Alignment explanation
Indices: 541676--542092 Score: 584
Period size: 167 Copynumber: 2.5 Consensus size: 166
541666 TTACATATGA
*
541676 TTTTAGCGAAACAAACTTGTGTCATGTTTGTATGTTGTGTTTGCAACCTTTGTTTCATGGTCCTT
1 TTTTAGCAAAACAAACTTGTGTCATGTTTGTATGTTGTGTTTG----CTTTGTTTCATGGT-CTT
* *
541741 -TTCCTCATTCTAATTATCTAGTGTTCATGGAGAAATTTTGTAAGTTCACAATAGCTGCTGTTAA
61 ATTCCTCGTTCTAATTAACTAGTGTTCATGGAGAAATTTTGTAAGTTCACAATAGCTGCTGTTAA
* *
541805 AACCCTTGAAGACATCTCGAAAACATTGGCTGTTGCACTCGG
126 AACCATTGAAGACATCTCAAAAACATTGGCTGTTGCA-TCGG
* * *
541847 TTTTAGCAAAACAAACTTGTATCATGTTTGCATGTTGTGTTTGCTTTGTTTCATGGTCTTAGTCC
1 TTTTAGCAAAACAAACTTGTGTCATGTTTGTATGTTGTGTTTGCTTTGTTTCATGGTCTTATTCC
* * * * *
541912 TCGTTCCAATTAACTAGTGTTTATGGTGAAATTTTGTAAGTTCACAATAGCTGCTGTTAGAATCA
66 TCGTTCTAATTAACTAGTGTTCATGGAGAAATTTTGTAAGTTCACAATAGCTGCTGTTAAAACCA
* * **
541977 TTGAAGACTTCTTAAAAACATTGGCTGTTGCATTTG
131 TTGAAGACATCTCAAAAACATTGGCTGTTGCATCGG
* * * *
542013 ATTTATCAAAATAAACTTGTGTCATGTTTGTATATTGTGTTTGCTTTGTTTCATGGTCTTATTCC
1 TTTTAGCAAAACAAACTTGTGTCATGTTTGTATGTTGTGTTTGCTTTGTTTCATGGTCTTATTCC
542078 TCGTTCTAATTAACT
66 TCGTTCTAATTAACT
542093 TTGGTCCATT
Statistics
Matches: 220, Mismatches: 25, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
166 77 0.35
167 103 0.47
171 40 0.18
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (166 bp):
TTTTAGCAAAACAAACTTGTGTCATGTTTGTATGTTGTGTTTGCTTTGTTTCATGGTCTTATTCC
TCGTTCTAATTAACTAGTGTTCATGGAGAAATTTTGTAAGTTCACAATAGCTGCTGTTAAAACCA
TTGAAGACATCTCAAAAACATTGGCTGTTGCATCGG
Found at i:548806 original size:27 final size:29
Alignment explanation
Indices: 548752--548814 Score: 80
Period size: 28 Copynumber: 2.2 Consensus size: 29
548742 TTAAAAAGTA
548752 AATAA-TTTTATTTTTTTGATATATTGGT
1 AATAATTTTTATTTTTTTGATATATTGGT
548780 AATAATTTTTAATTTTTTT-A-ATA-TGGT
1 AATAATTTTT-ATTTTTTTGATATATTGGT
548807 AATTAATT
1 AA-TAATT
548815 ACAGGGCATT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
27 6 0.19
28 13 0.41
29 5 0.16
30 8 0.25
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (29 bp):
AATAATTTTTATTTTTTTGATATATTGGT
Found at i:551029 original size:16 final size:16
Alignment explanation
Indices: 550996--551033 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
550986 TGAACACTTC
*
550996 AAAATTTAAAAGTTAT
1 AAAATTTAAAAGTAAT
551012 AAAATATTAAAA-TAAT
1 AAAAT-TTAAAAGTAAT
551028 AAAATT
1 AAAATT
551034 ACATTTTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 13 0.65
17 6 0.30
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (16 bp):
AAAATTTAAAAGTAAT
Found at i:553350 original size:21 final size:21
Alignment explanation
Indices: 553320--553368 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
553310 ATATCTGTTA
553320 ATTTTCTATTG-TTTTCCACT
1 ATTTTCTATTGTTTTTCCACT
553340 ATTTTGCTATTGTTTTTCCACT
1 ATTTT-CTATTGTTTTTCCACT
*
553362 AGTTTCT
1 ATTTTCT
553369 GTCATTTCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 5 0.19
21 8 0.31
22 13 0.50
ACGTcount: A:0.14, C:0.18, G:0.08, T:0.59
Consensus pattern (21 bp):
ATTTTCTATTGTTTTTCCACT
Found at i:558078 original size:23 final size:23
Alignment explanation
Indices: 558052--558096 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
558042 TGGGTATGTG
*
558052 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
558075 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
558097 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:560575 original size:7 final size:7
Alignment explanation
Indices: 560563--560589 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
560553 TAAGTTGAGA
560563 TTAAGGT
1 TTAAGGT
560570 TTAAGGT
1 TTAAGGT
560577 TTAAGGT
1 TTAAGGT
560584 TTAAGG
1 TTAAGG
560590 CATCAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.41
Consensus pattern (7 bp):
TTAAGGT
Found at i:563539 original size:29 final size:29
Alignment explanation
Indices: 563481--563539 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
563471 TTATGACTTT
* * *
563481 TATTCTAAATTAGTCCTTAAACTTTAAAG
1 TATTCTAAATTAATCCTCAAACTATAAAG
*
563510 TATTCT-AATTATATCCTCAAACTATCAAG
1 TATTCTAAATTA-ATCCTCAAACTATAAAG
563539 T
1 T
563540 TTTATATCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.37, C:0.17, G:0.05, T:0.41
Consensus pattern (29 bp):
TATTCTAAATTAATCCTCAAACTATAAAG
Found at i:565199 original size:44 final size:44
Alignment explanation
Indices: 565136--565224 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
565126 TTTCATATTG
565136 ACATAGCATTGTTTATTTTATATCACACTAATAAATAACTTAAT
1 ACATAGCATTGTTTATTTTATATCACACTAATAAATAACTTAAT
565180 ACATAGCATTGTTTATTTTATATCACACTAATAAATAACTTAAT
1 ACATAGCATTGTTTATTTTATATCACACTAATAAATAACTTAAT
565224 A
1 A
565225 TTTTCACAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.42, C:0.13, G:0.04, T:0.40
Consensus pattern (44 bp):
ACATAGCATTGTTTATTTTATATCACACTAATAAATAACTTAAT
Found at i:565899 original size:14 final size:14
Alignment explanation
Indices: 565880--565906 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
565870 TTAAAAAAAA
565880 TACCACTTAGTAAG
1 TACCACTTAGTAAG
565894 TACCACTTAGTAA
1 TACCACTTAGTAA
565907 AACTAATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (14 bp):
TACCACTTAGTAAG
Found at i:584943 original size:20 final size:20
Alignment explanation
Indices: 584915--584997 Score: 66
Period size: 20 Copynumber: 4.1 Consensus size: 20
584905 CCACATCAAT
*
584915 AATAATTTAAAAATTATAAA
1 AATATTTTAAAAATTATAAA
584935 AATATTTTAAAAA--ATAAA
1 AATATTTTAAAAATTATAAA
**
584953 GTTTAATTTTAAAAATATATAAA
1 -AAT-ATTTTAAAAAT-TATAAA
584976 AA-ATTTCATAAAAATTA-AAA
1 AATATTT--TAAAAATTATAAA
584996 AA
1 AA
584998 AAATGAAGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
18 5 0.10
19 1 0.02
20 31 0.61
21 2 0.04
22 7 0.14
23 5 0.10
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (20 bp):
AATATTTTAAAAATTATAAA
Found at i:587136 original size:32 final size:32
Alignment explanation
Indices: 587085--587160 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 32
587075 TATATTTGAT
*
587085 CAATTTTAGTCAT-TGTACTTTTTC-GAATTGGA
1 CAATTTTAGTC-TCTATAC-TTTTCAGAATTGGA
*
587117 CAATTTTAGTCTCTATACTTTTCAGAATTTGA
1 CAATTTTAGTCTCTATACTTTTCAGAATTGGA
*
587149 -AACTTTAGTCTC
1 CAATTTTAGTCTC
587161 GATCCAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
31 17 0.44
32 22 0.56
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.46
Consensus pattern (32 bp):
CAATTTTAGTCTCTATACTTTTCAGAATTGGA
Found at i:595806 original size:2 final size:2
Alignment explanation
Indices: 595799--595823 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
595789 GGCATAAATT
595799 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
595824 TTTTGATACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:601660 original size:2 final size:2
Alignment explanation
Indices: 601653--601694 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
601643 TACATGTATG
*
601653 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
601695 GAATCTTTGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:604804 original size:200 final size:199
Alignment explanation
Indices: 604428--604954 Score: 682
Period size: 200 Copynumber: 2.6 Consensus size: 199
604418 ATTATAGGAT
* * * * *
604428 TTCTAGGTTGATTGCTTGGCCTAGTTG-TTTCGAATCTGGTGTTTGATATCTATATTGCTTGTAT
1 TTCTAGGTTGATTGCTTGGCCTAGTTGCTAT-GAATCTTGTGCTTGATATCTATATTGCTCGGAT
* * *
604492 TTGGGTCTAAGTGTTAGACA-CTCGTGTTCTAATATGTAAAGGACAAGTGTATTTCATAAAAACC
65 TTGGGTCTAAGTGTTAGATACCT-GTGTT-TAATATGTATAGGACAAATGTATTTCATAAAAACC
* * * * * *
604556 GAAGAATTGGAGCTATCTATGATGTTAACTATAGGGTGAGTTGTGATTACTAAGGAAAAGGAATG
128 AAAGAATCGGAGCAATCTATGATATTAACAATAGGGTGAGTAGTGATTACTAAGGAAAAGGAATG
604621 AAATCCA
193 AAATCCA
*
604628 TTCTAGGTTGATTGCTTGGCCTAGTTGCCATGAATCTTGTGCTTGATATCTATATTGCTCGGATT
1 TTCTAGGTTGATTGCTTGGCCTAGTTGCTATGAATCTTGTGCTTGATATCTATATTGCTCGGATT
* * * *
604693 TGGGTCTAAGTTTTAGATACCTGTGTTTGAATTTGTATAGGACAAATGTATTTCATGAAAATCAA
66 TGGGTCTAAGTGTTAGATACCTGTGTTT-AATATGTATAGGACAAATGTATTTCATAAAAACCAA
* * * *
604758 AGAGTCGGAGCAATCTTTGATATTAACAATAGGTTGAGTAGTGATTACTAAGGAAAAGGAGTGAA
130 AGAATCGGAGCAATCTATGATATTAACAATAGGGTGAGTAGTGATTACTAAGGAAAAGGAATGAA
*
604823 ATCCC
195 ATCCA
* * *
604828 TTCTAGGTTGATTGCTTTGCCTAGTTGCTATGAATCTAT-TGCTTGATATCTATGTTGCTCGGAC
1 TTCTAGGTTGATTGCTTGGCCTAGTTGCTATGAATCT-TGTGCTTGATATCTATATTGCTCGGAT
* * * * *
604892 TTGGGTCTAAGCGTTAGATACCCGTGTTCAAATATGTTTCGGACAAATGTATTTCATTAAAAA
65 TTGGGTCTAAGTGTTAGATACCTGTGTT-TAATATGTATAGGACAAATGTATTTCA-TAAAAA
604955 TGAAGACTCG
Statistics
Matches: 285, Mismatches: 36, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
199 1 0.00
200 275 0.96
201 9 0.03
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.37
Consensus pattern (199 bp):
TTCTAGGTTGATTGCTTGGCCTAGTTGCTATGAATCTTGTGCTTGATATCTATATTGCTCGGATT
TGGGTCTAAGTGTTAGATACCTGTGTTTAATATGTATAGGACAAATGTATTTCATAAAAACCAAA
GAATCGGAGCAATCTATGATATTAACAATAGGGTGAGTAGTGATTACTAAGGAAAAGGAATGAAA
TCCA
Found at i:613176 original size:18 final size:18
Alignment explanation
Indices: 613153--613188 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
613143 TAACATATAA
613153 AAGTATATAATACATACC
1 AAGTATATAATACATACC
613171 AAGTATATAATACATACC
1 AAGTATATAATACATACC
613189 TGACCAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (18 bp):
AAGTATATAATACATACC
Found at i:613451 original size:38 final size:39
Alignment explanation
Indices: 613328--613511 Score: 266
Period size: 39 Copynumber: 4.8 Consensus size: 39
613318 GCGGACTTTA
*
613328 AGCCCGGATATAATACCAGCATAAA-GCCTGCGGGACTTT
1 AGCCCGGATATAATACCAGCATAAATGCCTTCGGGAC-TT
*
613367 AGCCTGGATATAATACCAGCATAAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCATAAATGCCTTCGGGACTT
* *
613406 AGCCCGGATATAACACCAGCACAAATGCCTTC-GGACTT
1 AGCCCGGATATAATACCAGCATAAATGCCTTCGGGACTT
* *
613444 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCATAAATGCCTTCGGGACTT
* *
613483 AGCTCGGACATAATACCAGCATAAA-GCCT
1 AGCCCGGATATAATACCAGCATAAATGCCT
613512 GCGGACCTCA
Statistics
Matches: 134, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
38 42 0.31
39 82 0.61
40 10 0.07
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (39 bp):
AGCCCGGATATAATACCAGCATAAATGCCTTCGGGACTT
Found at i:613470 original size:77 final size:77
Alignment explanation
Indices: 613328--613517 Score: 283
Period size: 77 Copynumber: 2.5 Consensus size: 77
613318 GCGGACTTTA
* * *
613328 AGCCCGGATATAATACCAGCATAAAGCCTGCGGGACTTTAGCCTGGATATAATACCAGCATAAAT
1 AGCCCGGATATAATACCAGCATAAAGCCTGC-GGACTTTAGCCCGGATATAACACCAGCACAAAT
613393 GCCTTCGGGACTT
65 GCCTTCGGGACTT
* * *
613406 AGCCCGGATATAACACCAGCACAAATGCCTTCGGAC-TTAGCCCGGATATAACACCAGCACAAAT
1 AGCCCGGATATAATACCAGCATAAA-GCCTGCGGACTTTAGCCCGGATATAACACCAGCACAAAT
613470 GCCTTCGGGACTT
65 GCCTTCGGGACTT
* *
613483 AGCTCGGACATAATACCAGCATAAAGCCTGCGGAC
1 AGCCCGGATATAATACCAGCATAAAGCCTGCGGAC
613518 CTCATGTCTG
Statistics
Matches: 100, Mismatches: 11, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
76 9 0.09
77 59 0.59
78 27 0.27
79 5 0.05
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.19
Consensus pattern (77 bp):
AGCCCGGATATAATACCAGCATAAAGCCTGCGGACTTTAGCCCGGATATAACACCAGCACAAATG
CCTTCGGGACTT
Found at i:614285 original size:2 final size:2
Alignment explanation
Indices: 614280--614309 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
614270 ACATGCACAC
614280 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
614310 GCATACTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:620216 original size:30 final size:30
Alignment explanation
Indices: 620153--620209 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
620143 AGGGGGATGA
*
620153 AAAATGGCAGCTCCATTAAGTTTGTAACAG
1 AAAATGGCAGCTCCATTAAGTCTGTAACAG
* *
620183 AAAATGGTAGCTCCATTACGTCTGTAA
1 AAAATGGCAGCTCCATTAAGTCTGTAA
620210 TGGAAAAGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (30 bp):
AAAATGGCAGCTCCATTAAGTCTGTAACAG
Found at i:622246 original size:91 final size:91
Alignment explanation
Indices: 622091--622267 Score: 327
Period size: 91 Copynumber: 1.9 Consensus size: 91
622081 TAGACTAGAT
622091 TTATGCTTAAATCTCGCCCGAACCCAGCCCAACCCGACCACCCGACCATGAATACCTCTGGTATC
1 TTATGCTTAAATCTCGCCCGAACCCAGCCCAACCCGACCACCCGACCATGAATACCTCTGGTATC
622156 ACATTTTCATTCAAAATATTTTAATA
66 ACATTTTCATTCAAAATATTTTAATA
* * *
622182 TTATGCTTAAATCTCGCCCGAACCCAGCTCAACCCGACTACCCGACTATGAATACCTCTGGTATC
1 TTATGCTTAAATCTCGCCCGAACCCAGCCCAACCCGACCACCCGACCATGAATACCTCTGGTATC
622247 ACATTTTCATTCAAAATATTT
66 ACATTTTCATTCAAAATATTT
622268 CAACTATGAT
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 83 1.00
ACGTcount: A:0.30, C:0.31, G:0.10, T:0.29
Consensus pattern (91 bp):
TTATGCTTAAATCTCGCCCGAACCCAGCCCAACCCGACCACCCGACCATGAATACCTCTGGTATC
ACATTTTCATTCAAAATATTTTAATA
Found at i:623420 original size:25 final size:25
Alignment explanation
Indices: 623389--623436 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
623379 ATAAGTTGTT
*
623389 TTGTTATCATTTTGTTATTATATTG
1 TTGTTATCATTTTGATATTATATTG
*
623414 TTGTTATTATTTTGATATTATAT
1 TTGTTATCATTTTGATATTATAT
623437 AACTTTTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.23, C:0.02, G:0.10, T:0.65
Consensus pattern (25 bp):
TTGTTATCATTTTGATATTATATTG
Found at i:625258 original size:22 final size:22
Alignment explanation
Indices: 625213--625258 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
625203 CCTAGTATAA
*
625213 AAATATGATATTTTAATTAGAT
1 AAATATGATATTTTAATTAAAT
*
625235 AAATATGAGTATTTT-TTTAAAT
1 AAATATGA-TATTTTAATTAAAT
625257 AA
1 AA
625259 TGCTTTACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (22 bp):
AAATATGATATTTTAATTAAAT
Found at i:626362 original size:31 final size:31
Alignment explanation
Indices: 626325--626392 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
626315 ATTTAGTTAT
626325 TAAACTATTCAAAAAATTTTA-TTAAAGTCAC
1 TAAACTATTCAAAAAATTTTACTT-AAGTCAC
* **
626356 TGAACTATTCAAAAGCTTTTACTTAAGTCAC
1 TAAACTATTCAAAAAATTTTACTTAAGTCAC
626387 TAAACT
1 TAAACT
626393 GTTAAGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 30 0.94
32 2 0.06
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (31 bp):
TAAACTATTCAAAAAATTTTACTTAAGTCAC
Found at i:634919 original size:87 final size:87
Alignment explanation
Indices: 634788--634946 Score: 194
Period size: 87 Copynumber: 1.8 Consensus size: 87
634778 TAAACTATTG
** * * **
634788 TTTACATGACATGTGTTTAGTTTTTTTGTTGACACATGAAATTTTT-GACCATTGATTTTATGTT
1 TTTACATGACACATGTTTAATTTTTTTGTTGACACATGAAATTTTTAGA-CATTAATTTTATAAT
634852 AATTCATATATTTTAAAAAATTA
65 AATTCATATATTTTAAAAAATTA
* * ** * *
634875 TTTACATGACACATGTTTAATTTTTTTTTTTACATTTGATATTTTTAGATATTAATTTTATAATA
1 TTTACATGACACATGTTTAATTTTTTTGTTGACACATGAAATTTTTAGACATTAATTTTATAATA
634940 ATTCATA
66 ATTCATA
634947 AGTAAAATTT
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
87 57 0.97
88 2 0.03
ACGTcount: A:0.31, C:0.08, G:0.09, T:0.52
Consensus pattern (87 bp):
TTTACATGACACATGTTTAATTTTTTTGTTGACACATGAAATTTTTAGACATTAATTTTATAATA
ATTCATATATTTTAAAAAATTA
Found at i:635562 original size:18 final size:19
Alignment explanation
Indices: 635526--635562 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
635516 TTTTAATTTT
635526 AAATATATTGATTAAAATA
1 AAATATATTGATTAAAATA
635545 AAATA-ATT-ATTAATAATA
1 AAATATATTGATTAA-AATA
635563 TAAAAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.29
18 7 0.41
19 5 0.29
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
AAATATATTGATTAAAATA
Found at i:645052 original size:72 final size:72
Alignment explanation
Indices: 644945--645098 Score: 272
Period size: 72 Copynumber: 2.1 Consensus size: 72
644935 GGTTATGTTG
644945 TTTTTTATTTTATGCTTATTATATACCATGACCTCATGTTGAATTCAAGTTATCAAGTAATTTTA
1 TTTTTTATTTTATGCTTATTATATACCATGACCTCATGTTGAATTCAAGTTATCAAGTAATTTTA
645010 TGGATTT
66 TGGATTT
* * *
645017 TTTTTTGTTTTATGCTTATTATGTACCGTGACCTCATGTTGAATTCAAGTTATCAAGTAATTTTA
1 TTTTTTATTTTATGCTTATTATATACCATGACCTCATGTTGAATTCAAGTTATCAAGTAATTTTA
645082 TGGATTT
66 TGGATTT
*
645089 TTTTTAATTT
1 TTTTTTATTT
645099 AAAGAAGTTA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 77 1.00
ACGTcount: A:0.25, C:0.10, G:0.12, T:0.52
Consensus pattern (72 bp):
TTTTTTATTTTATGCTTATTATATACCATGACCTCATGTTGAATTCAAGTTATCAAGTAATTTTA
TGGATTT
Found at i:651158 original size:285 final size:287
Alignment explanation
Indices: 650638--651181 Score: 783
Period size: 285 Copynumber: 1.9 Consensus size: 287
650628 TATTTAGAGA
* *
650638 TTCATATCCTCATATTTGTGTTCAGATATATGTCAGACATGGATAGTTAAAGAAAAATGAAGACT
1 TTCATATCCTCATATTGGTGTTCAGATATATGTCAAACATGGATAGTTAAAGAAAAATGAAGACT
* * * * * *
650703 CGGAGCAATATAGGTGAGAATTCCGACCCGGTGCTATGAAAACATCTCTTACAGTACTTACATTT
66 CAGAGCAACATAGGTGAGAACTCCAAACC-G-GC-ATG--AACATCTCTTACAATACTTACATTT
* *
650768 CTATTTAGTATGAAGTGTCGCATGACAAATCTAATAAAAACTCATTGGATCCCCATTTGCTTTGG
126 CTATTTAGTATGAAGTGTCGCATGACAAATCTAATAAAAACTCATTGGATCCCCATTTACATTGG
650833 TTCTTATGTATTGATAGGATGGTTTCAAGAACTCAAACCATTGATGGAGCTTGTGTTCTTGTTAG
191 TTCTTATGTATTGATAGGATGGTTTCAAGAACTCAAACCATTGATGGAGCTTGTGTTCTTGTTAG
650898 GAAGTTCGAGTGTTAGTATATATGATTATGTT
256 GAAGTTCGAGTGTTAGTATATATGATTATGTT
** *
650930 TTCATATCCTTGTATTGGTGTTCAGATATATGTCAAACATGGATAGTTGAAGAAAAATGAAGACT
1 TTCATATCCTCATATTGGTGTTCAGATATATGTCAAACATGGATAGTTAAAGAAAAATGAAGACT
* * * * *
650995 CAGAGCAACATAGGTGAGAACTCTAAACC-G-ATG-CCATTTGTTCCAATACTT-CGATTTCTAT
66 CAGAGCAACATAGGTGAGAACTCCAAACCGGCATGAACATCTCTTACAATACTTAC-ATTTCTAT
* * *
651056 TTAGTATGAAGTGTGTGCATGACAAATCTAATAAAAGCTCATTGGATCCTCATTTACATTGGTTC
130 TTAGTATGAAGTGT-CGCATGACAAATCTAATAAAAACTCATTGGATCCCCATTTACATTGGTTC
*
651121 TTATGTATTGATAGGATGGTTTCAA-AACTCAAAACCATTGATGGAGCTTTTGTTCTTGTTA
194 TTATGTATTGATAGGATGGTTTCAAGAACTC-AAACCATTGATGGAGCTTGTGTTCTTGTTA
651182 AGAGGTTGGG
Statistics
Matches: 227, Mismatches: 22, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
283 1 0.00
284 40 0.18
285 99 0.44
287 3 0.01
289 1 0.00
292 83 0.37
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (287 bp):
TTCATATCCTCATATTGGTGTTCAGATATATGTCAAACATGGATAGTTAAAGAAAAATGAAGACT
CAGAGCAACATAGGTGAGAACTCCAAACCGGCATGAACATCTCTTACAATACTTACATTTCTATT
TAGTATGAAGTGTCGCATGACAAATCTAATAAAAACTCATTGGATCCCCATTTACATTGGTTCTT
ATGTATTGATAGGATGGTTTCAAGAACTCAAACCATTGATGGAGCTTGTGTTCTTGTTAGGAAGT
TCGAGTGTTAGTATATATGATTATGTT
Found at i:653253 original size:24 final size:25
Alignment explanation
Indices: 653201--653254 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 25
653191 GATTGATATC
*
653201 AAAATTCAAGGACCACGAACTAAGAAAA
1 AAAAGTCAAGGACCACGAACT---AAAA
653229 AAAAGTCAAGGACCACGAACTAAAA
1 AAAAGTCAAGGACCACGAACTAAAA
653254 A
1 A
653255 TTAAATATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 5 0.20
28 20 0.80
ACGTcount: A:0.57, C:0.19, G:0.15, T:0.09
Consensus pattern (25 bp):
AAAAGTCAAGGACCACGAACTAAAA
Found at i:653819 original size:85 final size:85
Alignment explanation
Indices: 653723--653895 Score: 337
Period size: 85 Copynumber: 2.0 Consensus size: 85
653713 GGAGTGTTTC
653723 TTTTTATTTTAATACATTATATCCAAGCTATACATGCCATGGGTAAAAGATGTGTATTATAATTT
1 TTTTTATTTTAATACATTATATCCAAGCTATACATGCCATGGGTAAAAGATGTGTATTATAATTT
653788 GATCCGCATGTTCTAAATTG
66 GATCCGCATGTTCTAAATTG
*
653808 TTTTTCTTTTAATACATTATATCCAAGCTATACATGCCATGGGTAAAAGATGTGTATTATAATTT
1 TTTTTATTTTAATACATTATATCCAAGCTATACATGCCATGGGTAAAAGATGTGTATTATAATTT
653873 GATCCGCATGTTCTAAATTG
66 GATCCGCATGTTCTAAATTG
653893 TTT
1 TTT
653896 CACATTAGAT
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 87 1.00
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (85 bp):
TTTTTATTTTAATACATTATATCCAAGCTATACATGCCATGGGTAAAAGATGTGTATTATAATTT
GATCCGCATGTTCTAAATTG
Found at i:655978 original size:45 final size:45
Alignment explanation
Indices: 655877--656010 Score: 159
Period size: 45 Copynumber: 3.0 Consensus size: 45
655867 TATTTATTGG
* * *
655877 TAAATTTAAGGACCACAAATAAATTTATAT-G--ATTTTAAAAAA
1 TAAAATTAAGGACCACAAATAAATTTATATGGTTTTTTTTAAAAA
**
655919 TAAAATTAAGGACCAC-AATCAAATTTATATGGTTTTTTTTAAATT
1 TAAAATTAAGGACCACAAAT-AAATTTATATGGTTTTTTTTAAAAA
*
655964 TAAAATTAAGGACCACAAATAAATTTATATGCTTCTTTTTTTAAAAA
1 TAAAATTAAGGACCACAAATAAATTTATATG-GT-TTTTTTTAAAAA
656011 AATTTATAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
41 3 0.04
42 25 0.32
43 1 0.01
45 34 0.44
46 4 0.05
47 10 0.13
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.38
Consensus pattern (45 bp):
TAAAATTAAGGACCACAAATAAATTTATATGGTTTTTTTTAAAAA
Found at i:660524 original size:2 final size:2
Alignment explanation
Indices: 660519--660551 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
660509 TGCATGTGTG
660519 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
660552 GAACGTGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:661467 original size:14 final size:14
Alignment explanation
Indices: 661448--661476 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
661438 ATATAGATCT
661448 ATATTTTTTTAAAA
1 ATATTTTTTTAAAA
661462 ATATTTTTTTAAAA
1 ATATTTTTTTAAAA
661476 A
1 A
661477 AATAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATATTTTTTTAAAA
Found at i:662357 original size:20 final size:21
Alignment explanation
Indices: 662332--662372 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
662322 TTTTAGCTTT
*
662332 TTATCTTTAGTTAT-TTTTAA
1 TTATCTGTAGTTATCTTTTAA
*
662352 TTATCTGTATTTATCTTTTAA
1 TTATCTGTAGTTATCTTTTAA
662373 AATTTAAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.24, C:0.07, G:0.05, T:0.63
Consensus pattern (21 bp):
TTATCTGTAGTTATCTTTTAA
Found at i:664314 original size:40 final size:40
Alignment explanation
Indices: 664265--664512 Score: 295
Period size: 40 Copynumber: 6.2 Consensus size: 40
664255 TCTTCGGAAT
* * *
664265 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
664304 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
664344 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
664384 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
664424 TTAGCCCGGATATAATC-GCTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
* *
664464 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
664504 TTAGCCCGG
1 TTAGCCCGG
664513 GTATCATTCA
Statistics
Matches: 185, Mismatches: 22, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
39 3 0.02
40 181 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:672564 original size:40 final size:39
Alignment explanation
Indices: 672500--672747 Score: 241
Period size: 40 Copynumber: 6.2 Consensus size: 39
672490 TCTTCGGAAT
* ** *
672500 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCAGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTC
* * *** *
672539 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
672579 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
672619 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
* * * * *
672659 TTAGCCCAGATATAATC-GCTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
* * *
672699 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
672739 TTAGCCCGG
1 TTAGCCCGG
672748 GTATCATTCA
Statistics
Matches: 182, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
39 3 0.02
40 176 0.97
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
Found at i:672627 original size:80 final size:78
Alignment explanation
Indices: 672500--672747 Score: 273
Period size: 80 Copynumber: 3.1 Consensus size: 78
672490 TCTTCGGAAT
* * * * ** *
672500 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCAGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCAC
672564 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
* * *
672579 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCAC
*
672644 GAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
* * * * * *
672659 TTAGCCCAGATATAATCGCTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
1 TTAGCCCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCAC
*
672724 AAATGCCTTCGGGAC
64 AAATGCCTTCGGGTC
672739 TTAGCCCGG
1 TTAGCCCGG
672748 GTATCATTCA
Statistics
Matches: 142, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
79 5 0.04
80 134 0.94
81 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAA
ATGCCTTCGGGTC
Found at i:679512 original size:63 final size:62
Alignment explanation
Indices: 679395--679520 Score: 225
Period size: 63 Copynumber: 2.0 Consensus size: 62
679385 CTCAAAAAAT
*
679395 AAACTTCATATAAAAATCCAGAGTCTAAGGACAAACACATTAAAGCCAATACTATTGTAGAC
1 AAACTTCATATAAAAATCCAGAGTCTAAGGACAAACACATTAAAGCCAAAACTATTGTAGAC
*
679457 AAACTTCATATAGAAATCCAGAGTCTTAAGGACAAACACATTAAAGCCAAAACTATTGTAGAC
1 AAACTTCATATAAAAATCCAGAGTC-TAAGGACAAACACATTAAAGCCAAAACTATTGTAGAC
679520 A
1 A
679521 TAGCAGCAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
62 24 0.39
63 37 0.61
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (62 bp):
AAACTTCATATAAAAATCCAGAGTCTAAGGACAAACACATTAAAGCCAAAACTATTGTAGAC
Found at i:686287 original size:19 final size:21
Alignment explanation
Indices: 686263--686301 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
686253 CACCTATTTG
686263 TTGC-TTGC-TGTTTCTTTTT
1 TTGCTTTGCGTGTTTCTTTTT
686282 TTGCTTTGCGTGTTTCTTTT
1 TTGCTTTGCGTGTTTCTTTT
686302 CATTTTGCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 4 0.22
21 10 0.56
ACGTcount: A:0.00, C:0.15, G:0.18, T:0.67
Consensus pattern (21 bp):
TTGCTTTGCGTGTTTCTTTTT
Found at i:687881 original size:31 final size:32
Alignment explanation
Indices: 687823--687887 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
687813 TTTATATAGA
* *
687823 TAGAGGTACGAACAATACCTTGTTTATTAAAT
1 TAGAGGTACGAACAAAAACTTGTTTATTAAAT
*
687855 TAGAGTTACGAACAAAAAC-TGTTTATTAAAT
1 TAGAGGTACGAACAAAAACTTGTTTATTAAAT
687886 TA
1 TA
687888 CAAAATTACC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 14 0.47
32 16 0.53
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.34
Consensus pattern (32 bp):
TAGAGGTACGAACAAAAACTTGTTTATTAAAT
Found at i:688258 original size:19 final size:19
Alignment explanation
Indices: 688236--688280 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
688226 AACATTTTTT
688236 TAATAT-TTATAATGTAATA
1 TAATATATT-TAATGTAATA
* *
688255 TAATATATTTAATTTTATA
1 TAATATATTTAATGTAATA
688274 TAATATA
1 TAATATA
688281 AAATACAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 21 0.91
20 2 0.09
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
TAATATATTTAATGTAATA
Found at i:689489 original size:18 final size:19
Alignment explanation
Indices: 689456--689493 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
689446 CCCCACTTAC
*
689456 ACCCAAACAGACTAAACCA
1 ACCCAAACACACTAAACCA
689475 ACCCAAAC-CACTAAACCA
1 ACCCAAACACACTAAACCA
689493 A
1 A
689494 TATTATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.53, C:0.39, G:0.03, T:0.05
Consensus pattern (19 bp):
ACCCAAACACACTAAACCA
Found at i:690039 original size:3 final size:3
Alignment explanation
Indices: 690031--690114 Score: 141
Period size: 3 Copynumber: 28.0 Consensus size: 3
690021 TCAATACAAG
* * *
690031 TTA TTA TTA TTA TTA CTA TTG CTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
690079 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
690115 CACCACGAGC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:690441 original size:18 final size:19
Alignment explanation
Indices: 690408--690455 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
690398 AATCGATTTA
*
690408 ACATTAAATCAATATTATT
1 ACATTTAATCAATATTATT
690427 ACATTTAAT-AATATTATT
1 ACATTTAATCAATATTATT
* *
690445 AAATTTTATCA
1 ACATTTAATCA
690456 TAAAGTTGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 16 0.64
19 9 0.36
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (19 bp):
ACATTTAATCAATATTATT
Found at i:691119 original size:2 final size:2
Alignment explanation
Indices: 691112--691156 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
691102 TCTAAACAAA
*
691112 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
691154 AT A
1 AT A
691157 CATTTGTATA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:694473 original size:2 final size:2
Alignment explanation
Indices: 694466--694494 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
694456 TTGACCTTTA
694466 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
694495 CACAATATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:697614 original size:2 final size:2
Alignment explanation
Indices: 697607--697640 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
697597 GGCATGGAAT
697607 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
697641 CACATGTTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:698438 original size:124 final size:124
Alignment explanation
Indices: 698218--698466 Score: 498
Period size: 124 Copynumber: 2.0 Consensus size: 124
698208 TGGACAGAGC
698218 TTTGAGGTTGAATTAGAGGATGATGGCAGTAGGATTTTGCATATTTCACAGGTTATTAAGGAACT
1 TTTGAGGTTGAATTAGAGGATGATGGCAGTAGGATTTTGCATATTTCACAGGTTATTAAGGAACT
698283 CTAATTTCCATAGTTATTGTGTTCTGACAGTAGTTATATATCTATTAATTTTGTCGCTA
66 CTAATTTCCATAGTTATTGTGTTCTGACAGTAGTTATATATCTATTAATTTTGTCGCTA
698342 TTTGAGGTTGAATTAGAGGATGATGGCAGTAGGATTTTGCATATTTCACAGGTTATTAAGGAACT
1 TTTGAGGTTGAATTAGAGGATGATGGCAGTAGGATTTTGCATATTTCACAGGTTATTAAGGAACT
698407 CTAATTTCCATAGTTATTGTGTTCTGACAGTAGTTATATATCTATTAATTTTGTCGCTA
66 CTAATTTCCATAGTTATTGTGTTCTGACAGTAGTTATATATCTATTAATTTTGTCGCTA
698466 T
1 T
698467 ATATAACTCA
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
124 125 1.00
ACGTcount: A:0.27, C:0.10, G:0.21, T:0.41
Consensus pattern (124 bp):
TTTGAGGTTGAATTAGAGGATGATGGCAGTAGGATTTTGCATATTTCACAGGTTATTAAGGAACT
CTAATTTCCATAGTTATTGTGTTCTGACAGTAGTTATATATCTATTAATTTTGTCGCTA
Found at i:703435 original size:25 final size:24
Alignment explanation
Indices: 703338--703493 Score: 85
Period size: 22 Copynumber: 6.5 Consensus size: 24
703328 CATAGAAATG
* *
703338 AAAT-AATAATATAAAACAACTTA
1 AAATAAATGATATAAAACAATTTA
* * * *
703361 AAACAAAT-A-ATAAGATAATTTT
1 AAATAAATGATATAAAACAATTTA
*
703383 AAATAAATAATATATATATA-AAGGTTTA
1 AAATAAATGATATA-A-A-ACAA--TTTA
703411 AAATAAAT-ACTATAAAAGCAATTTA
1 AAATAAATGA-TATAAAA-CAATTTA
*
703436 AAGTAAATGATATAAAACAATTTA
1 AAATAAATGATATAAAACAATTTA
* * *
703460 AAAT-CATTA-ATAAAA-AATCTA
1 AAATAAATGATATAAAACAATTTA
*
703481 AAATAAATAATAT
1 AAATAAATGATAT
703494 GTAAAAAGAA
Statistics
Matches: 104, Mismatches: 15, Indels: 28
0.71 0.10 0.19
Matches are distributed among these distances:
21 9 0.09
22 25 0.24
23 10 0.10
24 16 0.15
25 20 0.19
26 4 0.04
27 5 0.05
28 15 0.14
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (24 bp):
AAATAAATGATATAAAACAATTTA
Found at i:703461 original size:24 final size:25
Alignment explanation
Indices: 703407--703463 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
703397 TATATAAAGG
703407 TTTAAAATAAATACTATAAAAGCAA
1 TTTAAAATAAATACTATAAAAGCAA
*
703432 TTTAAAGTAAATGA-TATAAAA-CAA
1 TTTAAAATAAAT-ACTATAAAAGCAA
703456 TTTAAAAT
1 TTTAAAAT
703464 CATTAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 10 0.34
25 18 0.62
26 1 0.03
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (25 bp):
TTTAAAATAAATACTATAAAAGCAA
Found at i:703533 original size:18 final size:18
Alignment explanation
Indices: 703510--703570 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
703500 AGAATTTTAT
*
703510 AATAAATAATATATGTAA
1 AATAAATAATATATATAA
* * * *
703528 AATAAAAAAGAAATTTAA
1 AATAAATAATATATATAA
*
703546 TATAAATAATATATATAA
1 AATAAATAATATATATAA
703564 AAGTAAA
1 AA-TAAA
703571 ATAAATAATG
Statistics
Matches: 32, Mismatches: 10, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
18 28 0.88
19 4 0.12
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (18 bp):
AATAAATAATATATATAA
Found at i:703537 original size:36 final size:37
Alignment explanation
Indices: 703496--703571 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 37
703486 AATAATATGT
* *
703496 AAAAAG-AATTTTATAATAAATAATATATGTAAAA-TA
1 AAAAAGAAATTTAAT-ATAAATAATATATATAAAAGTA
703532 AAAAAGAAATTTAATATAAATAATATATATAAAAGTA
1 AAAAAGAAATTTAATATAAATAATATATATAAAAGTA
703569 AAA
1 AAA
703572 TAAATAATGC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
36 24 0.67
37 12 0.33
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.30
Consensus pattern (37 bp):
AAAAAGAAATTTAATATAAATAATATATATAAAAGTA
Found at i:703600 original size:25 final size:24
Alignment explanation
Indices: 703538--703639 Score: 89
Period size: 25 Copynumber: 4.1 Consensus size: 24
703528 AATAAAAAAG
* *
703538 AAATTTAATATAAATAATATATATA
1 AAATTTAAAATAAATAATACATA-A
* *
703563 AAA-GTAAAATAAATAATGCATAA
1 AAATTTAAAATAAATAATACATAA
* *
703586 AGAATTTAAAATAAACAATATATAA
1 A-AATTTAAAATAAATAATACATAA
* *
703611 AAATTTGAAGATAAATAATCCATATA
1 AAATTT-AAAATAAATAATACATA-A
703637 AAA
1 AAA
703640 AAGAAGTTTA
Statistics
Matches: 61, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
23 2 0.03
24 22 0.36
25 33 0.54
26 4 0.07
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.29
Consensus pattern (24 bp):
AAATTTAAAATAAATAATACATAA
Found at i:703629 original size:50 final size:50
Alignment explanation
Indices: 703534--703670 Score: 125
Period size: 49 Copynumber: 2.6 Consensus size: 50
703524 GTAAAATAAA
* * *
703534 AAAGAAATTTAATATAAATAATATATATAAAAGTAAAATAAATAATGCAT
1 AAAGAAATTTAAAATAAACAATATATATAAAAGTAAAATAAATAATCCAT
* *
703584 AAAG-AATTTAAAATAAACAATATATA-AAAATTTGAAGATAAATAATCCATAT
1 AAAGAAATTTAAAATAAACAATATATATAAAA-GT-AAAATAAATAATCC--AT
* *
703636 AAAAAAGAAGTTTAAGAATAAACATTATATATAAA
1 ---AAAGAAATTTAA-AATAAACAATATATATAAA
703671 TTTATAATAA
Statistics
Matches: 70, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
48 4 0.06
49 21 0.30
50 16 0.23
52 2 0.03
55 4 0.06
56 6 0.09
57 14 0.20
58 3 0.04
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (50 bp):
AAAGAAATTTAAAATAAACAATATATATAAAAGTAAAATAAATAATCCAT
Found at i:703868 original size:29 final size:29
Alignment explanation
Indices: 703834--703891 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
703824 TAACATATAT
*
703834 ATATATATATAAGTTT-AAAATAAAAAAGG
1 ATATATAAATAA-TTTCAAAATAAAAAAGG
*
703863 ATATATAAATAATTTCAAAATAAATAAGG
1 ATATATAAATAATTTCAAAATAAAAAAGG
703892 TGTAATATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 3 0.12
29 23 0.88
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.31
Consensus pattern (29 bp):
ATATATAAATAATTTCAAAATAAAAAAGG
Found at i:708552 original size:111 final size:111
Alignment explanation
Indices: 708409--708621 Score: 381
Period size: 111 Copynumber: 1.9 Consensus size: 111
708399 TTCAAGTCTT
**
708409 TTTCCCCCTTCTTTTTCCCAAAATTGGTCCCCCCTTTCTTTTTCCCAAACCATTTCTCCCTAACC
1 TTTCCCCCTTCTTTTTCCCAAAATCAGTCCCCCCTTTCTTTTTCCCAAACCATTTCTCCCTAACC
*
708474 CGATTCCCTTTATTTGTCCCCCAGTTTCCCCAAATCGTTTTAAGTC
66 CGATTCCCTTTATTTGTCCCCCAATTTCCCCAAATCGTTTTAAGTC
*
708520 TTTCCCCCTTCTTTTTCCCAAAATCAGTCCCCCCTTTCTTTTTCCCAAACCATTTCTCCCTACCC
1 TTTCCCCCTTCTTTTTCCCAAAATCAGTCCCCCCTTTCTTTTTCCCAAACCATTTCTCCCTAACC
*
708585 CGATTCCCTTTATTTTTCCCCCAATTTCCCCAAATCG
66 CGATTCCCTTTATTTGTCCCCCAATTTCCCCAAATCG
708622 GCAGCCATCT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 97 1.00
ACGTcount: A:0.16, C:0.40, G:0.05, T:0.39
Consensus pattern (111 bp):
TTTCCCCCTTCTTTTTCCCAAAATCAGTCCCCCCTTTCTTTTTCCCAAACCATTTCTCCCTAACC
CGATTCCCTTTATTTGTCCCCCAATTTCCCCAAATCGTTTTAAGTC
Found at i:708580 original size:26 final size:26
Alignment explanation
Indices: 708520--708580 Score: 61
Period size: 27 Copynumber: 2.3 Consensus size: 26
708510 GTTTTAAGTC
* *
708520 TTTCCCCCTTCTTTTTCCCAAAATCA
1 TTTCCCCTTTCTTTTTCCCAAAACCA
**
708546 GTCCCCCCTTTCTTTTTCCC-AAACCA
1 -TTTCCCCTTTCTTTTTCCCAAAACCA
708572 TTTCTCCCT
1 TTTC-CCCT
708581 ACCCCGATTC
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
25 2 0.07
26 9 0.33
27 16 0.59
ACGTcount: A:0.15, C:0.43, G:0.02, T:0.41
Consensus pattern (26 bp):
TTTCCCCTTTCTTTTTCCCAAAACCA
Found at i:708649 original size:22 final size:22
Alignment explanation
Indices: 708619--708680 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 22
708609 TTTCCCCAAA
*
708619 TCGGCAGCCATCTGCATCTCCG
1 TCGGCAGCCCTCTGCATCTCCG
*
708641 TTGGCAGCCCGCTGCTGCATCTCCG
1 TCGGCAG-CC-CT-CTGCATCTCCG
708666 TCGGCAGCCCTCTGC
1 TCGGCAGCCCTCTGC
708681 TGCTTCTCCT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 10 0.29
23 4 0.12
24 3 0.09
25 17 0.50
ACGTcount: A:0.10, C:0.42, G:0.26, T:0.23
Consensus pattern (22 bp):
TCGGCAGCCCTCTGCATCTCCG
Found at i:708664 original size:25 final size:25
Alignment explanation
Indices: 708630--708689 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
708620 CGGCAGCCAT
*
708630 CTGCATCTCCGTTGGCAGCCCGCTG
1 CTGCATCTCCGTCGGCAGCCCGCTG
*
708655 CTGCATCTCCGTCGGCAGCCCTCTG
1 CTGCATCTCCGTCGGCAGCCCGCTG
*
708680 CTGCTTCTCC
1 CTGCATCTCC
708690 TTGTAAGCTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.07, C:0.43, G:0.23, T:0.27
Consensus pattern (25 bp):
CTGCATCTCCGTCGGCAGCCCGCTG
Found at i:712371 original size:23 final size:23
Alignment explanation
Indices: 712332--712376 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
712322 AGCGGTAGGA
712332 AAAATAAATAAAATATAATAAAT
1 AAAATAAATAAAATATAATAAAT
*
712355 AAAATATAAT-AAGTATAATAAA
1 AAAATA-AATAAAATATAATAAA
712377 CTATATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATAAATAAAATATAATAAAT
Found at i:712374 original size:14 final size:14
Alignment explanation
Indices: 712334--712366 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
712324 CGGTAGGAAA
712334 AATAAATAAAATAT
1 AATAAATAAAATAT
712348 AATAAATAAAATAT
1 AATAAATAAAATAT
712362 AATAA
1 AATAA
712367 GTATAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AATAAATAAAATAT
Found at i:714166 original size:45 final size:45
Alignment explanation
Indices: 714111--714319 Score: 178
Period size: 45 Copynumber: 4.6 Consensus size: 45
714101 ACTATTTGAT
*
714111 CTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGAATGTTTAGC
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGAATGTTTAGC
* * **
714156 CTGCTCCACTCCTGCTCAGTGAAGATAAG-GCT-G-ATGATTGGAAT
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGAATG-TT-TAGC
* * * * * * **
714200 CTGCTCCATTGCC-GATAAATGGAGATAAGA-CTTGCCAAAATTT-GAC
1 CTGCTCCACT-CCTGCTCAGTGAAGATAAGATC-TG-GAATGTTTAG-C
* * *
714246 CTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTATGTTTAGC
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGAATGTTTAGC
714291 CTGCTCCACTCCTGCTCAGTGAAGATAAG
1 CTGCTCCACTCCTGCTCAGTGAAGATAAG
714320 GCTGATGATT
Statistics
Matches: 124, Mismatches: 28, Indels: 24
0.70 0.16 0.14
Matches are distributed among these distances:
42 3 0.02
43 3 0.02
44 25 0.20
45 66 0.53
46 23 0.19
47 3 0.02
48 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (45 bp):
CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGAATGTTTAGC
Found at i:714201 original size:135 final size:133
Alignment explanation
Indices: 713969--714594 Score: 866
Period size: 135 Copynumber: 4.7 Consensus size: 133
713959 GGTTTGCTGT
* * * *
713969 AATTTGATCTGC-TCTACTCCTAATCAGCGAAGATAAGATCTGTATGTTTAGCCTGCTTCACTCC
1 AATTTGATCTGCTTC-ACTCCTACTCAGTGAAGATAAGATCTGGATGTTTAGCCTGCTCCACTCC
* * ** ** * *
714033 TCCTCAGTGAAGATAAGGCTGGTGGCTAAAATCTGCTTCATTGCCGATACATGGAGATAAGACTT
65 TGCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGATACATGGAGATAAGA-TT
*
714098 GC-CAC
129 -CACAA
* *
714103 TATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGAATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTTCACTCCTACTCAGTGAAGATAAGATCTGG-ATGTTTAGCCTGCTCCACTCC
* *
714168 TGCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATTGCCGATAAATGGAGATAAGACTT
65 TGCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGATACATGGAGATAAGA-TT
714233 GC-CAA
129 -CACAA
* * *
714238 AATTTGACCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTTCACTCCTACTCAGTGAAGATAAGATCT-GGATGTTTAGCCTGCTCCACTCC
* * *
714303 TGCTCAGTGAAGATAAGGCTGATGATTGGAATCTGTTCCATCGCCGGTACGTGGAGATAAGATTC
65 TGCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGATACATGGAGATAAGATTC
714368 ATCAA
130 A-CAA
* *
714373 AATTCGATCTGCTTCACTCCTACTCAGTGAAGATAAGATCTGG-TTTTTAGCCTGCTCCACTCCT
1 AATTTGATCTGCTTCACTCCTACTCAGTGAAGATAAGATCTGGATGTTTAGCCTGCTCCACTCCT
* *
714437 GCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCA
66 GCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGATACATGGAGATAAGATTCA
714502 TCAA
131 -CAA
* * *
714506 AATTCGATCTGCTTCACTCCTACTCAGTGAAGATAACATCTGG-TTTTTAGCCTGCTCCACTCCT
1 AATTTGATCTGCTTCACTCCTACTCAGTGAAGATAAGATCTGGATGTTTAGCCTGCTCCACTCCT
714570 GCTCAGTGAAGATAAGGCTGATGAT
66 GCTCAGTGAAGATAAGGCTGATGAT
714595 ATCTGTAATC
Statistics
Matches: 457, Mismatches: 30, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
133 177 0.39
134 38 0.08
135 241 0.53
136 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (133 bp):
AATTTGATCTGCTTCACTCCTACTCAGTGAAGATAAGATCTGGATGTTTAGCCTGCTCCACTCCT
GCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGATACATGGAGATAAGATTCA
CAA
Found at i:714434 original size:43 final size:43
Alignment explanation
Indices: 714381--714585 Score: 130
Period size: 43 Copynumber: 4.7 Consensus size: 43
714371 AAAATTCGAT
* *
714381 CTGCTTCACTCCTACTCAGTGAAGATAAGATCTGGTTTTTAGC
1 CTGCTCCACTCCTACTCAGTGAAGATAAGATCTGGATTTTAGC
* * ** **
714424 CTGCTCCACTCCTGCTCAGTGAAGATAAG-GCTGATGATTGGAAT
1 CTGCTCCACTCCTACTCAGTGAAGATAAGATCTG--GATTTTAGC
* * ** ** * *
714468 CTGCTCCATCGCCGGTA--C-GTGGAGATAAGATTCATCAAAATTCGAT
1 CTGCTCCA-CTCC--TACTCAGTGAAGATAAGA-TC-TGGATTTTAG-C
* * *
714514 CTGCTTCACTCCTACTCAGTGAAGATAACATCTGGTTTTTAGC
1 CTGCTCCACTCCTACTCAGTGAAGATAAGATCTGGATTTTAGC
*
714557 CTGCTCCACTCCTGCTCAGTGAAGATAAG
1 CTGCTCCACTCCTACTCAGTGAAGATAAG
714586 GCTGATGATA
Statistics
Matches: 116, Mismatches: 34, Indels: 24
0.67 0.20 0.14
Matches are distributed among these distances:
42 3 0.03
43 55 0.47
44 26 0.22
45 11 0.09
46 19 0.16
47 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (43 bp):
CTGCTCCACTCCTACTCAGTGAAGATAAGATCTGGATTTTAGC
Found at i:726104 original size:23 final size:23
Alignment explanation
Indices: 726065--726109 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
726055 ACGGTAGGAA
726065 AAAATAAATAAAATATAATAAAT
1 AAAATAAATAAAATATAATAAAT
*
726088 AAAATATAAT-AAGTATAATAAA
1 AAAATA-AATAAAATATAATAAA
726110 CTATATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATAAATAAAATATAATAAAT
Found at i:726107 original size:14 final size:14
Alignment explanation
Indices: 726067--726099 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
726057 GGTAGGAAAA
726067 AATAAATAAAATAT
1 AATAAATAAAATAT
726081 AATAAATAAAATAT
1 AATAAATAAAATAT
726095 AATAA
1 AATAA
726100 GTATAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AATAAATAAAATAT
Found at i:727784 original size:18 final size:18
Alignment explanation
Indices: 727755--727844 Score: 128
Period size: 18 Copynumber: 4.9 Consensus size: 18
727745 ATAATCTTCA
727755 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
727774 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
727792 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
727809 ATGATTGTAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
727827 ATGATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
727845 AGATATGATT
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 16 0.25
18 33 0.52
19 15 0.23
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:727796 original size:37 final size:36
Alignment explanation
Indices: 727755--727844 Score: 146
Period size: 35 Copynumber: 2.5 Consensus size: 36
727745 ATAATCTTCA
727755 ATGATATGCAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATAT-CAATCTTAGATATGATTGCAATCTTAGAT
*
727792 ATGATA-CAATCTTAGATATGATTGTAATCTTAGAT
1 ATGATATCAATCTTAGATATGATTGCAATCTTAGAT
727827 ATGATATACAATCTTAGA
1 ATGATAT-CAATCTTAGA
727845 AGATATGATT
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
35 34 0.68
37 16 0.32
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (36 bp):
ATGATATCAATCTTAGATATGATTGCAATCTTAGAT
Found at i:727870 original size:22 final size:20
Alignment explanation
Indices: 727764--727880 Score: 70
Period size: 18 Copynumber: 6.0 Consensus size: 20
727754 AATGATATGC
*
727764 AATCTT-AGATATGA-TTGC
1 AATCTTGAGATATGATTTGT
**
727782 AATCTT-AGATATGA--TAC
1 AATCTTGAGATATGATTTGT
727799 AATCTT-AGATATGA-TTGT
1 AATCTTGAGATATGATTTGT
* **
727817 AATCTT-AGATATGATATAC
1 AATCTTGAGATATGATTTGT
727836 AATCTTAGAAGATATGATTTTGT
1 AATCTT-G-AGATATGA-TTTGT
* *
727859 AATCTTGGAGATTTAATTTGT
1 AATCTT-GAGATATGATTTGT
727880 A
1 A
727881 GATATCCTTT
Statistics
Matches: 81, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
17 16 0.20
18 29 0.36
19 7 0.09
21 6 0.07
22 14 0.17
23 9 0.11
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (20 bp):
AATCTTGAGATATGATTTGT
Found at i:728165 original size:12 final size:11
Alignment explanation
Indices: 728150--728183 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
728140 TATTTTTAAT
728150 TTATTATATATA
1 TTATT-TATATA
728162 TTATTTATTATA
1 TTATTTA-TATA
728174 TTATTTATAT
1 TTATTTATAT
728184 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:728175 original size:21 final size:21
Alignment explanation
Indices: 728151--728259 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
728141 ATTTTTAATT
728151 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
728172 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* * *
728190 AATT-TGTAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
728209 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
728232 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
728253 TATTATA
1 TATTATA
728260 CATTATTTTA
Statistics
Matches: 65, Mismatches: 13, Indels: 20
0.66 0.13 0.20
Matches are distributed among these distances:
17 8 0.12
18 5 0.08
19 2 0.03
20 8 0.12
21 25 0.38
22 7 0.11
23 8 0.12
24 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.60
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:728181 original size:16 final size:16
Alignment explanation
Indices: 728148--728178 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
728138 CTTATTTTTA
728148 ATTTATTATATATATT
1 ATTTATTATATATATT
728164 ATTTATTATAT-TATT
1 ATTTATTATATATATT
728179 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:734768 original size:2 final size:2
Alignment explanation
Indices: 734761--734795 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
734751 ATAACAACAA
734761 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
734796 GGAATTAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:735257 original size:30 final size:28
Alignment explanation
Indices: 735223--735308 Score: 82
Period size: 28 Copynumber: 3.0 Consensus size: 28
735213 GAATATCATT
*
735223 AAAATTTTTAAATAATGATTAGAATTTGTA
1 AAAATTTTTAAAT-ATGATAAGAATTT-TA
* * *
735253 AAAATTATTGAAATTTTATAAGAATTTTA
1 AAAATT-TTTAAATATGATAAGAATTTTA
* * *
735282 AAAATTTTTAAAAATTATAATAATTTT
1 AAAATTTTTAAATATGATAAGAATTTT
735309 TGTTAAAAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
28 17 0.36
29 8 0.17
30 16 0.34
31 6 0.13
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (28 bp):
AAAATTTTTAAATATGATAAGAATTTTA
Found at i:735306 original size:19 final size:18
Alignment explanation
Indices: 735222--735309 Score: 68
Period size: 19 Copynumber: 4.6 Consensus size: 18
735212 TGAATATCAT
*
735222 TAAAATTTTTAAATAATGA
1 TAAAATTTTTAAA-AATTA
* *
735241 TTAGAATTTGTAAAAATTA
1 -TAAAATTTTTAAAAATTA
* * *
735260 TTGAAATTTTATAAGAATTT
1 -TAAAATTTT-TAAAAATTA
735280 TAAAAATTTTTAAAAATTA
1 T-AAAATTTTTAAAAATTA
735299 TAATAATTTTT
1 TAA-AATTTTT
735310 GTTAAAAATA
Statistics
Matches: 54, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
18 2 0.04
19 27 0.50
20 25 0.46
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.47
Consensus pattern (18 bp):
TAAAATTTTTAAAAATTA
Found at i:738978 original size:96 final size:96
Alignment explanation
Indices: 738812--739001 Score: 272
Period size: 96 Copynumber: 2.0 Consensus size: 96
738802 TTCTTTTTGT
* * * *
738812 TCCTCTTAGCCCTCTTGGTTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCATTGTCT
1 TCCTCTTAGCCCTATTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCAGTATCT
* * *
738877 GCTCCATCGTTCCCTTTGATGACAGACTTGC
66 GCTCCATCGTTCCCATAGATAACAGACTTGC
* * * *
738908 TCCTCTTTGCCCTATTGGCTTCGGCTTTTCCCTTGCTTGAACCAAGCTTCTTGGGCTCCGTATCT
1 TCCTCTTAGCCCTATTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCAGTATCT
*
738973 TCTCCATCGTTCCCATAGATAACAGACTT
66 GCTCCATCGTTCCCATAGATAACAGACTT
739002 CCTCGGACAC
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 82 1.00
ACGTcount: A:0.14, C:0.32, G:0.17, T:0.37
Consensus pattern (96 bp):
TCCTCTTAGCCCTATTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCAGTATCT
GCTCCATCGTTCCCATAGATAACAGACTTGC
Found at i:741757 original size:110 final size:113
Alignment explanation
Indices: 741453--741786 Score: 545
Period size: 110 Copynumber: 3.0 Consensus size: 113
741443 AAATGTGAAT
* *
741453 TTTTAAGTCTTTTTCCCCCTTCTTTTTCTCAAAATCGATCCCCCCTTTCTTTTTCCCAAACCATT
1 TTTTAAGTCTTTTTCCCCCTTCTTTTTCCCAAAATCGGTCCCCCCTTTCTTTTTCCCAAACCATT
*
741518 TCTCCCTACCCCGATTCCCTTTATTTTTCCCCCAATTTCCCCCAATCG
66 TCTCCCTACCCCGATTCCCTTTATTTTTCCCCCAATTTCCCCAAATCG
* * *
741566 TTTTAAGGT-TTTTT-CCCCTTCTTTTTCCCAAAATGGGT-CCCCCGTTCTTTTTCCCAAACCGT
1 TTTTAA-GTCTTTTTCCCCCTTCTTTTTCCCAAAATCGGTCCCCCCTTTCTTTTTCCCAAACCAT
*
741628 TTCTCCCTACCCCGATTCCC-TT-TTTTT-CCCCAGTTTCCCCAAATCG
65 TTCTCCCTACCCCGATTCCCTTTATTTTTCCCCCAATTTCCCCAAATCG
741674 TTTTAAGTCTTTTTCCCCCTTCTTTTTCCCAAAATCGGTCCCCCCTTTCTTTTTCCCAAACCATT
1 TTTTAAGTCTTTTTCCCCCTTCTTTTTCCCAAAATCGGTCCCCCCTTTCTTTTTCCCAAACCATT
*
741739 TCTCCCTACCCCGATTCCCTTTATTTTTCCCCCAATCTCCCCAAATCG
66 TCTCCCTACCCCGATTCCCTTTATTTTTCCCCCAATTTCCCCAAATCG
741787 GCAGCCCTCT
Statistics
Matches: 202, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
107 2 0.01
108 28 0.14
109 28 0.14
110 44 0.22
111 44 0.22
112 26 0.13
113 28 0.14
114 2 0.01
ACGTcount: A:0.15, C:0.38, G:0.06, T:0.41
Consensus pattern (113 bp):
TTTTAAGTCTTTTTCCCCCTTCTTTTTCCCAAAATCGGTCCCCCCTTTCTTTTTCCCAAACCATT
TCTCCCTACCCCGATTCCCTTTATTTTTCCCCCAATTTCCCCAAATCG
Found at i:741829 original size:25 final size:25
Alignment explanation
Indices: 741784--741854 Score: 94
Period size: 25 Copynumber: 3.0 Consensus size: 25
741774 TCTCCCCAAA
741784 TCGGCAG-CC-CT-CTGCATCTCCG
1 TCGGCAGCCCACTGCTGCATCTCCG
*
741806 TTGGCAGCCCACTGCTGCATCTCCG
1 TCGGCAGCCCACTGCTGCATCTCCG
* *
741831 TCGGCAGCCCTCTGCTGCTTCTCC
1 TCGGCAGCCCACTGCTGCATCTCC
741855 TTGTAAGCTG
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
22 6 0.14
23 2 0.05
24 2 0.05
25 32 0.76
ACGTcount: A:0.08, C:0.44, G:0.23, T:0.25
Consensus pattern (25 bp):
TCGGCAGCCCACTGCTGCATCTCCG
Found at i:742851 original size:2 final size:2
Alignment explanation
Indices: 742844--742877 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
742834 ACATTTAAAA
742844 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
742878 GACAAATACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:750940 original size:21 final size:23
Alignment explanation
Indices: 750916--750967 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
750906 ACAAAAATAT
* *
750916 AATAAAAAGTGATTAT-ATT-AA
1 AATAAAAAGTAAATATGATTAAA
*
750937 AATAAAATGTAAATATGATTAAA
1 AATAAAAAGTAAATATGATTAAA
750960 AATAAAAA
1 AATAAAAA
750968 TATATATATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 13 0.52
22 3 0.12
23 9 0.36
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (23 bp):
AATAAAAAGTAAATATGATTAAA
Done.