Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 205 of 427
Found at i:57486523 original size:47 final size:47
Alignment explanation
Indices: 57486455--57486649 Score: 327
Period size: 47 Copynumber: 4.1 Consensus size: 47
57486445 CATACATATT
* **
57486455 TCACATTAGCCATTCTACCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
57486502 TCACATTGGCCATTTGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
57486549 TCACATTGGCCATTCGGCCTTATCACGCATATGCATTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
57486596 TCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
57486643 TCACATT
1 TCACATT
57486650 AAAATCCTAA
Statistics
Matches: 138, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 138 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:57486528 original size:22 final size:22
Alignment explanation
Indices: 57486501--57486622 Score: 56
Period size: 24 Copynumber: 5.3 Consensus size: 22
57486491 GTTCACATTC
57486501 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
** *
57486523 ATCACACATAT-G-CATGTTCACATT
1 AT--CACAT-TGGCCAT-TTGGCCTT
*
57486547 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
*
57486570 ATCACGCATAT-G-CATTT-TCACATT
1 ATCA--CAT-TGGCCATTTGGC-C-TT
*
57486594 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
57486617 ATCACA
1 ATCACA
57486623 CATATACATG
Statistics
Matches: 73, Mismatches: 11, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 15 0.21
23 24 0.33
24 25 0.34
25 9 0.12
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:57486562 original size:94 final size:94
Alignment explanation
Indices: 57486407--57486650 Score: 332
Period size: 94 Copynumber: 2.6 Consensus size: 94
57486397 CATATATATT
* * * *
57486407 TCACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATT
1 TCACATTGGCCATTCGGCCTTATCACACATATACATGT-TC--ACAT-TCATCACATTAGCCATT
*
57486469 CTACCTTATCACACATATGCATGTTCACATTCA
62 CGACCTTATCACACATATGCATGTTCACATTCA
* * * *
57486502 TCACATTGGCCATTTGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTAGCCATTCGAC
* *
57486567 CTTATCACGCATATGCATTTTCACATTCA
66 CTTATCACACATATGCATGTTCACATTCA
57486596 TCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTA
1 TCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTA
57486651 AAATCCTAAA
Statistics
Matches: 132, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
93 1 0.01
94 98 0.74
95 19 0.14
96 3 0.02
97 11 0.08
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (94 bp):
TCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTAGCCATTCGAC
CTTATCACACATATGCATGTTCACATTCA
Found at i:57486624 original size:24 final size:24
Alignment explanation
Indices: 57486550--57486625 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
57486540 TCACATTCAT
57486550 CACATTGGCCATTCGGCCTTATCA
1 CACATTGGCCATTCGGCCTTATCA
* ** *
57486574 CGCATAT-G-CATT-TTCACAT-TCA
1 CACAT-TGGCCATTCGGC-CTTATCA
57486596 TCACATTGGCCATTCGGCCTTATCA
1 -CACATTGGCCATTCGGCCTTATCA
57486621 CACAT
1 CACAT
57486626 ATACATGTTC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 11 0.30
24 16 0.43
25 5 0.14
ACGTcount: A:0.24, C:0.32, G:0.13, T:0.32
Consensus pattern (24 bp):
CACATTGGCCATTCGGCCTTATCA
Found at i:57496075 original size:24 final size:24
Alignment explanation
Indices: 57496048--57496139 Score: 148
Period size: 24 Copynumber: 3.8 Consensus size: 24
57496038 GTCAGTAGAA
57496048 GATTTAGGAGCTGATAAGGGAGAG
1 GATTTAGGAGCTGATAAGGGAGAG
57496072 GATTTAGGAGCTGATAAGGGAGAG
1 GATTTAGGAGCTGATAAGGGAGAG
* * *
57496096 GATTTAGGAGCTAATAAAGGAGAA
1 GATTTAGGAGCTGATAAGGGAGAG
57496120 GATTTAGGAGCTGATCAAGG
1 GATTTAGGAGCTGAT-AAGG
57496140 AGCAGGAGTT
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
24 59 0.95
25 3 0.05
ACGTcount: A:0.36, C:0.05, G:0.37, T:0.22
Consensus pattern (24 bp):
GATTTAGGAGCTGATAAGGGAGAG
Found at i:57511892 original size:78 final size:80
Alignment explanation
Indices: 57511757--57511937 Score: 235
Period size: 78 Copynumber: 2.3 Consensus size: 80
57511747 TCGAATGATG
* *
57511757 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
57511822 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * * **
57511836 TTCCGGGCTAAG-CCCGAAGGCATGGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
57511898 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
57511915 ACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCAT
57511938 TTGAACGAGT
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
77 1 0.01
78 51 0.57
79 26 0.29
80 11 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:57511947 original size:40 final size:39
Alignment explanation
Indices: 57511758--57511940 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
57511748 CGAATGATGT
* *
57511758 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
57511797 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
57511838 CCGGGCTAAG-CCCGAAGGCA-TGGTGCGAGTTATTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57511875 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57511916 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
57511941 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
38 23 0.19
39 19 0.16
40 70 0.57
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57520037 original size:77 final size:79
Alignment explanation
Indices: 57519903--57520082 Score: 233
Period size: 77 Copynumber: 2.3 Consensus size: 79
57519893 TCGAATGATG
*
57519903 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGC-ATGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
57519968 GTGCGAGTTACTA-A
65 GTGCGAGTTACTATA
* * * **
57519982 TTCCGGGCTAAG-CCCGAAGGCATGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
57520044 TGTGCGAGTTACTATA
64 TGTGCGAGTTACTATA
* *
57520060 ACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCAT
57520083 TTGAACGAGT
Statistics
Matches: 89, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
76 1 0.01
77 51 0.57
78 17 0.19
79 9 0.10
80 11 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATA
Found at i:57520092 original size:40 final size:39
Alignment explanation
Indices: 57519904--57520085 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
57519894 CGAATGATGT
* *
57519904 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
57519943 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
57519984 CCGGGCTAAG-CCCGAAGGCA--TGTGCGAGTTATTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57520020 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57520061 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
57520086 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
37 23 0.19
38 10 0.08
39 9 0.07
40 70 0.57
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57522988 original size:27 final size:27
Alignment explanation
Indices: 57522942--57523248 Score: 323
Period size: 27 Copynumber: 11.4 Consensus size: 27
57522932 GAAGTTAATA
* *
57522942 TAGGGT-AAATAACTGTAATACCCTTG
1 TAGGGTAAAATGACCGTAATACCCTTG
*
57522968 TAGGGTAAAATGACCGCAATACCCTTG
1 TAGGGTAAAATGACCGTAATACCCTTG
*
57522995 TAGGGTAAAATGACCGCAATA-CCTCTG
1 TAGGGTAAAATGACCGTAATACCCT-TG
*
57523022 TAGGGTAAAATGACCATAATA-CCTCTG
1 TAGGGTAAAATGACCGTAATACCCT-TG
* *
57523049 TAAGGTAAAATGACAGTAATACCCTTG
1 TAGGGTAAAATGACCGTAATACCCTTG
* *
57523076 TAGGGTAAAATGATCATAATACCCTTG
1 TAGGGTAAAATGACCGTAATACCCTTG
* * *
57523103 TAGGGTAAAATGACCGTAATGCCCCTA
1 TAGGGTAAAATGACCGTAATACCCTTG
* * * *
57523130 TAGGGCAAAATGACCGTAATGCCCCTA
1 TAGGGTAAAATGACCGTAATACCCTTG
* * *
57523157 TAGGGCAAAATGACCGTAATACCCCTA
1 TAGGGTAAAATGACCGTAATACCCTTG
* * * *
57523184 CAGGGTAAAATTACCGTAATGCCCTTA
1 TAGGGTAAAATGACCGTAATACCCTTG
* * * *
57523211 TAGGGTGAAATGACTGTAATACCCCTC
1 TAGGGTAAAATGACCGTAATACCCTTG
*
57523238 TAAGGTAAAAT
1 TAGGGTAAAAT
57523249 AAAAATTATG
Statistics
Matches: 245, Mismatches: 33, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
26 9 0.04
27 233 0.95
28 3 0.01
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
TAGGGTAAAATGACCGTAATACCCTTG
Found at i:57523538 original size:38 final size:38
Alignment explanation
Indices: 57523496--57523577 Score: 137
Period size: 38 Copynumber: 2.2 Consensus size: 38
57523486 CTGCGATATC
*
57523496 GGTGTGCTGGGTGGGTGGGTCAATTTATATCCCCACAT
1 GGTGTGCTGGCTGGGTGGGTCAATTTATATCCCCACAT
* *
57523534 GGTGTTCTGGCTGGGTGGGTCAATTTATATCCCCATAT
1 GGTGTGCTGGCTGGGTGGGTCAATTTATATCCCCACAT
57523572 GGTGTG
1 GGTGTG
57523578 TTGGTTGGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.15, C:0.17, G:0.34, T:0.34
Consensus pattern (38 bp):
GGTGTGCTGGCTGGGTGGGTCAATTTATATCCCCACAT
Found at i:57523676 original size:28 final size:28
Alignment explanation
Indices: 57523640--57523694 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
57523630 ATTACACTGT
* *
57523640 ATTGATACTATATTGGGCTTAGGCCCAC
1 ATTGATACTATATAGGGCTAAGGCCCAC
* *
57523668 ATTGTTACTGTATAGGGCTAAGGCCCA
1 ATTGATACTATATAGGGCTAAGGCCCA
57523695 GACTGTACTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (28 bp):
ATTGATACTATATAGGGCTAAGGCCCAC
Found at i:57531939 original size:30 final size:30
Alignment explanation
Indices: 57531903--57531963 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
57531893 GCATTTATAC
57531903 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
57531933 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
57531963 A
1 A
57531964 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:57539018 original size:92 final size:92
Alignment explanation
Indices: 57538861--57539030 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
57538851 CCCCCTAAGT
* *
57538861 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57538926 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
57538953 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57539018 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57539031 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:57539027 original size:46 final size:46
Alignment explanation
Indices: 57538856--57539027 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
57538846 GTAACCCCCC
* * *
57538856 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
57538902 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
57538948 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
57538994 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57539028 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:57539046 original size:46 final size:46
Alignment explanation
Indices: 57538858--57539046 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
57538848 AACCCCCCTA
* ** * *
57538858 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
57538903 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
57538951 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
57538996 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
57539042 AGTGA
1 AGTGA
57539047 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:57539480 original size:29 final size:30
Alignment explanation
Indices: 57539448--57539506 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
57539438 ATTTAATACG
57539448 AACTTTGGAAAAATTACACTTTT-CCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
57539477 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
57539507 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:57540600 original size:26 final size:26
Alignment explanation
Indices: 57540530--57540584 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
57540520 ATAAGAGTTT
57540530 ACAGATCAAACATACAAAATTTTCAA
1 ACAGATCAAACATACAAAATTTTCAA
57540556 ACAGATCAAACATACAAAATTTTCAA
1 ACAGATCAAACATACAAAATTTTCAA
57540582 ACA
1 ACA
57540585 TTTCATATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.55, C:0.20, G:0.04, T:0.22
Consensus pattern (26 bp):
ACAGATCAAACATACAAAATTTTCAA
Found at i:57541455 original size:46 final size:46
Alignment explanation
Indices: 57541402--57541492 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
57541392 ACCCAGTGCC
*
57541402 TCATCGGATAATTCTAAGTAATAATTTGATACCCAGTGTCTCATCT
1 TCATCGGATAATTCTAAGTAATAATTTGACACCCAGTGTCTCATCT
57541448 TCATCGGATAATTCTAAGTAATAATTTGACACCCAGTGTCTCATC
1 TCATCGGATAATTCTAAGTAATAATTTGACACCCAGTGTCTCATC
57541493 GACTAAACCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (46 bp):
TCATCGGATAATTCTAAGTAATAATTTGACACCCAGTGTCTCATCT
Found at i:57541570 original size:41 final size:40
Alignment explanation
Indices: 57541392--57541572 Score: 134
Period size: 46 Copynumber: 4.4 Consensus size: 40
57541382 CCAGTTTGGG
* * * * *
57541392 ACCCAGTGCCTCATCGGATAATTCTAAGTAATAATTTGAT
1 ACCCAGTGTCTCATCGAATAATTCCAAGTAGTAATTTGAC
* * *
57541432 ACCCAGTGTCTCATCTTCATCGGATAATTCTAAGTAATAATTTGAC
1 ACCCAGTG-----TC-TCATCGAATAATTCCAAGTAGTAATTTGAC
* * *
57541478 ACCCAGTGTCTCATCGACTAA-ACCAA--AGTAATTTGGC
1 ACCCAGTGTCTCATCGAATAATTCCAAGTAGTAATTTGAC
* * * *
57541515 ACCCAGTATTTCATCGAATTAATTCGAAGTAGTAAATTGAC
1 ACCCAGTGTCTCATCGAA-TAATTCCAAGTAGTAATTTGAC
*
57541556 ACTCAGTGTCTCATCGA
1 ACCCAGTGTCTCATCGA
57541573 CTTGAAGTCG
Statistics
Matches: 113, Mismatches: 18, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
37 24 0.21
38 3 0.03
39 6 0.05
40 17 0.15
41 25 0.22
45 1 0.01
46 37 0.33
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (40 bp):
ACCCAGTGTCTCATCGAATAATTCCAAGTAGTAATTTGAC
Found at i:57541863 original size:17 final size:17
Alignment explanation
Indices: 57541841--57541874 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
57541831 CCGTGCATCT
57541841 TCAAATAACCCGATAGA
1 TCAAATAACCCGATAGA
*
57541858 TCAAATAACTCGATAGA
1 TCAAATAACCCGATAGA
57541875 ATAGATCTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.21, G:0.12, T:0.21
Consensus pattern (17 bp):
TCAAATAACCCGATAGA
Found at i:57543042 original size:10 final size:10
Alignment explanation
Indices: 57543027--57543085 Score: 52
Period size: 10 Copynumber: 6.2 Consensus size: 10
57543017 TTTCTTCCCC
57543027 TTTTCTTTCT
1 TTTTCTTTCT
57543037 TTTTCTTTCT
1 TTTTCTTTCT
* * *
57543047 TTCTATTTCG
1 TTTTCTTTCT
*
57543057 TTTGC--T-T
1 TTTTCTTTCT
57543064 TTTTCTTTCT
1 TTTTCTTTCT
*
57543074 TTTTGTTTCT
1 TTTTCTTTCT
57543084 TT
1 TT
57543086 ATTTCATCCA
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
7 4 0.11
8 1 0.03
9 1 0.03
10 31 0.84
ACGTcount: A:0.02, C:0.17, G:0.05, T:0.76
Consensus pattern (10 bp):
TTTTCTTTCT
Found at i:57543072 original size:23 final size:22
Alignment explanation
Indices: 57543042--57543090 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
57543032 TTTCTTTTTC
57543042 TTTCTTTCTATTTCGTTTGCTTT-
1 TTTCTTTCT-TTTCGTTT-CTTTA
*
57543065 TTTCTTTCTTTTTGTTTCTTTA
1 TTTCTTTCTTTTCGTTTCTTTA
57543087 TTTC
1 TTTC
57543091 ATCCATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 11 0.46
23 9 0.38
ACGTcount: A:0.04, C:0.16, G:0.06, T:0.73
Consensus pattern (22 bp):
TTTCTTTCTTTTCGTTTCTTTA
Found at i:57550258 original size:12 final size:12
Alignment explanation
Indices: 57550238--57550275 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
57550228 ACATTCTCGC
* *
57550238 GTGCCAGGCTGT
1 GTGCTAGGCCGT
57550250 GTGCTAGGCCGT
1 GTGCTAGGCCGT
57550262 GTGCTAGGCCGT
1 GTGCTAGGCCGT
57550274 GT
1 GT
57550276 AATAGCCTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.08, C:0.24, G:0.42, T:0.26
Consensus pattern (12 bp):
GTGCTAGGCCGT
Found at i:57551174 original size:25 final size:25
Alignment explanation
Indices: 57551140--57551188 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
57551130 CTTACATGAG
57551140 CTGTAAATTGATACGCTCAAACGAT
1 CTGTAAATTGATACGCTCAAACGAT
* * *
57551165 CTGTAAATTGGTATGCTCACACGA
1 CTGTAAATTGATACGCTCAAACGA
57551189 CTTGTGGGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (25 bp):
CTGTAAATTGATACGCTCAAACGAT
Found at i:57555127 original size:93 final size:93
Alignment explanation
Indices: 57555017--57555187 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
57555007 ACCCCTAAGT
****
57555017 GAACTCGGACTCAACTCAACAAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
57555082 CGAGGTCGGATGCCTAGTTACATCTCAC
66 CGAGGTCGGATGCCTAGTTACATCTCAC
* * * *
57555110 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
57555175 CGAGTTCGGATGC
66 CGAGGTCGGATGC
57555188 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGGTCGGATGCCTAGTTACATCTCAC
Found at i:57555203 original size:46 final size:46
Alignment explanation
Indices: 57555012--57555189 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
57555002 AACCTACCCC
* * * *
57555012 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCA
* * *
57555058 TAAATGAACTCGGACTCAACTCAACGAGGTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CTCG---CATCCA
* * * *** *
57555106 TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCA
57555151 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
57555190 AACCATCCTA
Statistics
Matches: 105, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 64 0.61
47 29 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCA
Found at i:57558232 original size:47 final size:47
Alignment explanation
Indices: 57558163--57558330 Score: 161
Period size: 47 Copynumber: 3.6 Consensus size: 47
57558153 GGTTGAGCAC
57558163 CCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAATTGTAACTAGGCAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAATTGTAACTAGGCAT
* *
57558210 CCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGTGAAC---GC--
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAT---TGT-AACTAGGCAT
* * *
57558256 CCGAGCTCGTTGAGTTGAGTCCTAGTTCGAGAGA-TGTAACTAGGCAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA-ATTGTAACTAGGCAT
* * *
57558303 CTGAGCTCGTTGAGTTGAGTCCAAGTTC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC
57558331 ACTTATGGGC
Statistics
Matches: 100, Mismatches: 9, Indels: 24
0.75 0.07 0.18
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
45 2 0.02
46 26 0.26
47 57 0.57
48 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAATTGTAACTAGGCAT
Found at i:57558302 original size:93 final size:93
Alignment explanation
Indices: 57558162--57558338 Score: 284
Period size: 93 Copynumber: 1.9 Consensus size: 93
57558152 TGGTTGAGCA
*
57558162 CCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAATTGTAACTAGGCATCCGAACTCGTTGAGTTG
1 CCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAATTGTAACTAGGCATCCGAACTCGTTGAGTTG
*
57558227 AGTCCGAGTTCACTTATGGATGTGAACG
66 AGTCCAAGTTCACTTATGGATGTGAACG
* * * *
57558255 CCCGAGCTCGTTGAGTTGAGTCCTAGTTCGAGAGA-TGTAACTAGGCATCTGAGCTCGTTGAGTT
1 CCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGA-ATTGTAACTAGGCATCCGAACTCGTTGAGTT
57558319 GAGTCCAAGTTCACTTATGG
65 GAGTCCAAGTTCACTTATGG
57558339 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
93 76 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
CCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAATTGTAACTAGGCATCCGAACTCGTTGAGTTG
AGTCCAAGTTCACTTATGGATGTGAACG
Found at i:57562994 original size:47 final size:47
Alignment explanation
Indices: 57562876--57563048 Score: 189
Period size: 47 Copynumber: 3.7 Consensus size: 47
57562866 GGATGGTTGA
* *
57562876 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAG
* *
57562924 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA--AG
* * *
57562969 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAAC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAG
*
57563016 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
57563049 TAGGGGGGGT
Statistics
Matches: 108, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
43 6 0.06
45 32 0.30
46 30 0.28
47 34 0.31
48 1 0.01
49 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAAG
Found at i:57563045 original size:92 final size:93
Alignment explanation
Indices: 57562876--57563045 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
57562866 GGATGGTTGA
* *
57562876 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
57562941 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
57562969 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
57563033 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
57563046 ACTTAGGGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 40 0.55
93 33 0.45
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57563311 original size:19 final size:20
Alignment explanation
Indices: 57563274--57563311 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
57563264 ATAAGGTGGT
57563274 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
57563294 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
57563312 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:57568292 original size:93 final size:93
Alignment explanation
Indices: 57568132--57568302 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
57568122 GCCCCTAAAT
* * *
57568132 GAACTCGGACTCAACTCAACAAGCTCTGGCGTTCGCATCCATAAATGAACTCGGACTCAACTTAA
1 GAACTCGGACTCAACTCAACAAGCTCTGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
57568197 CGAGTTCGGATGCCTAGTTACATCTTAC
66 CGAGTTCGGATGCCTAGTTACATCTTAC
* * * ** *
57568225 GAACTCGGACTCAACTCAACGAGTTC-GAACATTCGTATCTGTAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACAAGCTCTG-ACATTCGCATCCATAAATGAACTCGGACTCAACTCA
57568289 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
57568303 TCAACCATCC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 1 0.01
93 67 0.99
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCTGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTTAC
Found at i:57574779 original size:140 final size:139
Alignment explanation
Indices: 57574527--57574882 Score: 391
Period size: 140 Copynumber: 2.5 Consensus size: 139
57574517 CACTTGCGCG
* * * * * * * *
57574527 AGCCAGTGTAAGACATGTGTGGGACATGCATCAACCA-CATTATGAGAGCCAGTATAAGACCATG
1 AGCCAGTGTAAGACATGTCTAGGACATGCATCGACTATGA-GATGATAGCCAGTGTAAGACCATG
* * *
57574591 TTTGGTACATGGCATCGGCAATGAGACGAGATCTAGTGTAAGACATGTCTGGGACATGCATCGGC
65 TCTGGGACAT-GCATCGACAATGAGACGAGATCTAGTGTAAGACATGTCTGGGACATGCATCGG-
57574656 CT-CGAGA-CAT
128 CTACGAGATCAT
* *
57574666 AAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCTATGAGATGATAGTCAGTGTAAGACCATG
1 -AGCCAGTGTAAGACATGTCTAGGACATGCATCGACTATGAGATGATAGCCAGTGTAAGACCATG
* * *
57574731 TCTGGGACATGCATCGACTATGAGATGATAGTC-AGTGTAAGACCATGTCTGGGACATGCATCGG
65 TCTGGGACATGCATCGACAATGAGACGAGA-TCTAGTGTAAGA-CATGTCTGGGACATGCATCGG
* *
57574795 CTATGAGATGAT
128 CTACGAGATCAT
* * * *
57574807 AGTCAGTGTAAGACCATGTCTAGAACATGGCATTGACT-TGAGAT-ATGAGCCAGTGTAAGACCG
1 AGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGACTATGAGATGAT-AGCCAGTGTAAGACCA
57574870 TGTCTGGGACATG
63 TGTCTGGGACATG
57574883 GCATTGGCAC
Statistics
Matches: 184, Mismatches: 24, Indels: 15
0.83 0.11 0.07
Matches are distributed among these distances:
139 27 0.15
140 101 0.55
141 49 0.27
142 7 0.04
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (139 bp):
AGCCAGTGTAAGACATGTCTAGGACATGCATCGACTATGAGATGATAGCCAGTGTAAGACCATGT
CTGGGACATGCATCGACAATGAGACGAGATCTAGTGTAAGACATGTCTGGGACATGCATCGGCTA
CGAGATCAT
Found at i:57574805 original size:94 final size:93
Alignment explanation
Indices: 57574530--57574882 Score: 387
Period size: 94 Copynumber: 3.8 Consensus size: 93
57574520 TTGCGCGAGC
* * * * * * *
57574530 CAGTGTAAGACATGTGTGGGACATGCATCAAC--CACATTATGAGAGCCAGTATAAGACCATGTT
1 CAGTGTAAGACATGTCTGGGACATGCATCGACTTGAGATGAT-A-AGCCAGTGTAAGACCATGTC
* * * *
57574593 TGGTACATGGCATCGGCAATGAGACGAGA-T
64 TGGGACAT-GCATCGGCTATGAGATGATAGT
* * *
57574623 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-CATAAGCCAGTGTAAGA-CATGTC
1 C-AGTGTAAGACATGTCTGGGACATGCATC-GACTTGAGATGATAAGCCAGTGTAAGACCATGTC
*
57574686 TAGGACATGCATCGGCTATGAGATGATAGT
64 TGGGACATGCATCGGCTATGAGATGATAGT
*
57574716 CAGTGTAAGACCATGTCTGGGACATGCATCGACTATGAGATGAT-AGTCAGTGTAAGACCATGTC
1 CAGTGTAAGA-CATGTCTGGGACATGCATCGACT-TGAGATGATAAGCCAGTGTAAGACCATGTC
57574780 TGGGACATGCATCGGCTATGAGATGATAGT
64 TGGGACATGCATCGGCTATGAGATGATAGT
* * * * *
57574810 CAGTGTAAGACCATGTCTAGAACATGGCATTGACTTGAGAT-ATGAGCCAGTGTAAGACCGTGTC
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGACTTGAGATGATAAGCCAGTGTAAGACCATGTC
57574874 TGGGACATG
64 TGGGACATG
57574883 GCATTGGCAC
Statistics
Matches: 226, Mismatches: 23, Indels: 21
0.84 0.09 0.08
Matches are distributed among these distances:
92 29 0.13
93 51 0.23
94 132 0.58
95 10 0.04
96 2 0.01
97 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (93 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGACTTGAGATGATAAGCCAGTGTAAGACCATGTCTG
GGACATGCATCGGCTATGAGATGATAGT
Found at i:57574888 original size:47 final size:47
Alignment explanation
Indices: 57574530--57574882 Score: 346
Period size: 47 Copynumber: 7.6 Consensus size: 47
57574520 TTGCGCGAGC
* * * * * * *
57574530 CAGTGTAAGA-CATGTGTGGGACATGCATCAACCA-CATTATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGCATCGACTATGA-GATGATAGT
* * * * * * *
57574576 CAGTATAAGACCATGTTTGGTACATGGCATCGGCAATGAGACGAGA-T
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGACTATGAGATGATAGT
* * * *
57574623 CTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCT-CGAGA-CATAAGC
1 C-AGTGTAAGACCATGTCTGGGACATGCATC-GACTATGAGATGAT-AGT
* *
57574670 CAGTGTAAGA-CATGTCTAGGACATGCATCGGCTATGAGATGATAGT
1 CAGTGTAAGACCATGTCTGGGACATGCATCGACTATGAGATGATAGT
57574716 CAGTGTAAGACCATGTCTGGGACATGCATCGACTATGAGATGATAGT
1 CAGTGTAAGACCATGTCTGGGACATGCATCGACTATGAGATGATAGT
*
57574763 CAGTGTAAGACCATGTCTGGGACATGCATCGGCTATGAGATGATAGT
1 CAGTGTAAGACCATGTCTGGGACATGCATCGACTATGAGATGATAGT
* * * *
57574810 CAGTGTAAGACCATGTCTAGAACATGGCATTGACT-TGAGAT-ATGAGC
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGACTATGAGATGAT-AGT
*
57574857 CAGTGTAAGACCGTGTCTGGGACATG
1 CAGTGTAAGACCATGTCTGGGACATG
57574883 GCATTGGCAC
Statistics
Matches: 260, Mismatches: 35, Indels: 24
0.82 0.11 0.08
Matches are distributed among these distances:
45 4 0.02
46 65 0.25
47 163 0.63
48 27 0.10
49 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCGACTATGAGATGATAGT
Found at i:57587988 original size:28 final size:28
Alignment explanation
Indices: 57587956--57588047 Score: 152
Period size: 28 Copynumber: 3.3 Consensus size: 28
57587946 ATTTACTAGA
*
57587956 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
57587984 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
57588012 ATA-CCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
57588039 ATACCCCTA
1 ATACCCCTA
57588048 GGGTTAATTT
Statistics
Matches: 61, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
27 28 0.46
28 33 0.54
ACGTcount: A:0.34, C:0.28, G:0.09, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:57588026 original size:27 final size:27
Alignment explanation
Indices: 57587960--57588044 Score: 136
Period size: 27 Copynumber: 3.1 Consensus size: 27
57587950 ACTAGAATAC
*
57587960 CCCTATGTATGCAAAATTACCAT-TATA
1 CCCTATGTATGCAAAATGACC-TCTATA
57587987 CCCCTATGTATGCAAAATGACCTCTATA
1 -CCCTATGTATGCAAAATGACCTCTATA
57588015 CCCTATGTATGCAAAATGACCTCTATA
1 CCCTATGTATGCAAAATGACCTCTATA
57588042 CCC
1 CCC
57588045 CTAGGGTTAA
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
27 31 0.56
28 24 0.44
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.29
Consensus pattern (27 bp):
CCCTATGTATGCAAAATGACCTCTATA
Found at i:57588252 original size:28 final size:27
Alignment explanation
Indices: 57588153--57588241 Score: 126
Period size: 27 Copynumber: 3.2 Consensus size: 27
57588143 AGGAAGCGTC
57588153 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
57588181 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
57588208 CTGGTGGCACTGCCACAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATATCTGT-T
57588236 CTGGTG
1 CTGGTG
57588242 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
27 32 0.58
28 23 0.42
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:57588253 original size:55 final size:55
Alignment explanation
Indices: 57588153--57588266 Score: 144
Period size: 55 Copynumber: 2.1 Consensus size: 55
57588143 AGGAAGCGTC
*
57588153 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCCTGCCACAT-TATCTGTAT
* * *
57588208 CTGGTGGC-ACTGCCACAAA-TATCTGTATCTGGTGACTCTGTCACATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAATTATCTGT-TCTGGTGACCCTGCCACATTATCTGTAT
57588263 CTGG
1 CTGG
57588267 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
54 14 0.27
55 38 0.73
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCCTGCCACATTATCTGTAT
Found at i:57589348 original size:11 final size:10
Alignment explanation
Indices: 57589320--57589353 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
57589310 AGCCTGTAAG
57589320 TATTCTGAAT
1 TATTCTGAAT
*
57589330 TTTTCTGAAT
1 TATTCTGAAT
57589340 ATATTCTGAAT
1 -TATTCTGAAT
57589351 TAT
1 TAT
57589354 CTTCTGTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:57596054 original size:40 final size:39
Alignment explanation
Indices: 57595889--57596072 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
57595879 AAATTGAATG
* * *
57595889 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
57595929 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
57595969 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
57596009 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
57596048 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
57596073 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:57596097 original size:80 final size:81
Alignment explanation
Indices: 57595929--57596117 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
57595919 GCTGGAAATT
* * * *
57595929 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
57595994 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
57596010 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
57596073 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
57596089 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
57596118 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:57599983 original size:39 final size:39
Alignment explanation
Indices: 57599889--57600051 Score: 115
Period size: 39 Copynumber: 4.2 Consensus size: 39
57599879 GAATCACGTA
* * * * *
57599889 CCTTCGGAATTTA-ACCGGATATAG-GACTCGCTCGATTG
1 CCTTCGGAA-TTAGCCCGGTTATAGTAACTCGCACAATTG
* * *
57599927 TCTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTG
1 CCTTC-GGA-ATTAGCCCGGTTATAGTAACTCGCACAATTG
57599967 CCTTCGGAATTAGCCCGGATT-TAGTAACTCGCA-AA-TG
1 CCTTCGGAATTAGCCCGG-TTATAGTAACTCGCACAATTG
* * * * *
57600004 CCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATG
1 CCTTC-GGAATTAGCCCGGTTATAGTAACTCGCACAATTG
57600044 CCTT-GGAA
1 CCTTCGGAA
57600052 ATTGACCCGG
Statistics
Matches: 102, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
37 9 0.09
38 34 0.33
39 35 0.34
40 24 0.24
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (39 bp):
CCTTCGGAATTAGCCCGGTTATAGTAACTCGCACAATTG
Found at i:57600032 original size:38 final size:39
Alignment explanation
Indices: 57599956--57600102 Score: 147
Period size: 39 Copynumber: 3.8 Consensus size: 39
57599946 TTATAGTGAT
*
57599956 TCGCACAATTGCCTTC-GGAATTAGCCCGGATTTAGTAAC
1 TCGCACAA-TGCCTTCGGGAATTAACCCGGATTTAGTAAC
* * *
57599995 TCGCA-AATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
* * *
57600033 TCGCACAAATGCCTT-GGAAATTGACCCGGATTTAGTCAC
1 TCGCAC-AATGCCTTCGGGAATTAACCCGGATTTAGTAAC
* * * *
57600072 TTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAATGCCTTCGGGAATTAACCCGGA
57600103 CACCATTCGA
Statistics
Matches: 87, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
37 7 0.08
38 26 0.30
39 30 0.34
40 24 0.28
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
TCGCACAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
Found at i:57600037 original size:77 final size:79
Alignment explanation
Indices: 57599956--57600101 Score: 201
Period size: 77 Copynumber: 1.9 Consensus size: 79
57599946 TTATAGTGAT
* * *
57599956 TCGCACAATTGCCTTCGG-AATT-AGCCCGGATTTAGTAAC-TCGCA-AATGCCTTCGGGACTTA
1 TCGCACAAATGCCTT-GGAAATTGA-CCCGGATTTAGTAACTTAGCACAAAGCCTTCGGGACTTA
57600017 ACCCGGTTTTGGTAAC
64 ACCCGGTTTTGGTAAC
* *
57600033 TCGCACAAATGCCTTGGAAATTGACCCGGATTTAGTCACTTAGCACAAAGCCTTCGGGACTTAGC
1 TCGCACAAATGCCTTGGAAATTGACCCGGATTTAGTAACTTAGCACAAAGCCTTCGGGACTTAAC
57600098 CCGG
66 CCGG
57600102 ACACCATTCG
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
76 2 0.03
77 32 0.53
78 5 0.08
79 21 0.35
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
TCGCACAAATGCCTTGGAAATTGACCCGGATTTAGTAACTTAGCACAAAGCCTTCGGGACTTAAC
CCGGTTTTGGTAAC
Found at i:57600101 original size:40 final size:39
Alignment explanation
Indices: 57599928--57600102 Score: 146
Period size: 39 Copynumber: 4.5 Consensus size: 39
57599918 GCTCGATTGT
* * *
57599928 CTTCGGGACATT-GCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGATT-TAGTAACTCGCACAA-AGC
* *
57599968 CTTC-GGAATTAGCCCGGATTTAGTAACTCGCA-AATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAAGC
* * *
57600005 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAA-GC
* * * *
57600045 CTT-GGAAATT-GACCCGGATTTAGTCACTTAGCACAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAAGC
57600084 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
57600103 CACCATTCGA
Statistics
Matches: 109, Mismatches: 17, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
37 7 0.06
38 28 0.26
39 43 0.39
40 30 0.28
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAAGC
Found at i:57602954 original size:40 final size:39
Alignment explanation
Indices: 57602789--57602972 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
57602779 AAATTGAATG
* * *
57602789 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
57602829 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
57602869 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
57602909 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
57602948 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
57602973 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:57602997 original size:80 final size:81
Alignment explanation
Indices: 57602829--57603017 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
57602819 GCTGGAAATT
* * * *
57602829 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
57602894 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
57602910 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
57602973 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
57602989 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
57603018 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:57611370 original size:80 final size:80
Alignment explanation
Indices: 57611286--57611434 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
57611276 TATGGTAACC
* * * *
57611286 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
57611350 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
57611366 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
57611431 CCGG
66 CCGG
57611435 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:57611376 original size:40 final size:38
Alignment explanation
Indices: 57611327--57611434 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
57611317 ATCACGATTT
*
57611327 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
57611367 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
57611407 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
57611435 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:57614766 original size:48 final size:48
Alignment explanation
Indices: 57614692--57614972 Score: 210
Period size: 48 Copynumber: 5.9 Consensus size: 48
57614682 GGTAAAATGT
** * * * *
57614692 CGATGCCATGTCTTAGACATGTTCTTACACTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAGGC
* * ** * * *
57614740 TGATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCATCTC-AGTAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAG-GC
* * * *
57614788 CGATGCCATGTTCCAAACAAGGTCTTACACTGGCTCACGTATCGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAGGC
* * * * * * * * *
57614836 CAAAGCCGCT-TCCTAGACATGGCCTTACACTAGCTCTTGCATA--AATGC
1 CGATGCC-ATGTCCCAAACATGGTCTTACACTGGCTC--ACATATCAAGGC
* * * *
57614884 CAATGCCATGTTCCAAACTTGGTCTTACACTGGCTCACATATCAAGAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAGGC
* *
57614932 CGATGCCATGTTCCAAACATGGTCTTACGCTGGCTCACATA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATA
57614973 CCCTAGTATC
Statistics
Matches: 179, Mismatches: 46, Indels: 16
0.74 0.19 0.07
Matches are distributed among these distances:
46 4 0.02
47 3 0.02
48 166 0.93
49 3 0.02
50 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAGGC
Found at i:57614856 original size:96 final size:96
Alignment explanation
Indices: 57614714--57614959 Score: 246
Period size: 96 Copynumber: 2.6 Consensus size: 96
57614704 TTAGACATGT
* ** * *
57614714 TCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACCAGCTC-T-
1 TCTTACACTGGCTCACATATCGAGGCCAAAGCCATGTCCCAGACATGGCCTTACACCAGCTCTTG
* * *
57614777 CATCTCAGTACCGATGCCATGTTCCAAACAAGG
66 CA--TAAATACCAATGCCATGTTCCAAACAAGG
* * * *
57614810 TCTTACACTGGCTCACGTATCGAGGCCAAAGCCGCT-TCCTAGACATGGCCTTACACTAGCTCTT
1 TCTTACACTGGCTCACATATCGAGGCCAAAGCC-ATGTCCCAGACATGGCCTTACACCAGCTCTT
* **
57614874 GCATAAATGCCAATGCCATGTTCCAAACTTGG
65 GCATAAATACCAATGCCATGTTCCAAACAAGG
* * * * * * *
57614906 TCTTACACTGGCTCACATATCAAGACCGATGCCATGTTCCAAACATGGTCTTAC
1 TCTTACACTGGCTCACATATCGAGGCCAAAGCCATGTCCCAGACATGGCCTTAC
57614960 GCTGGCTCAC
Statistics
Matches: 121, Mismatches: 25, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
95 1 0.01
96 116 0.96
97 2 0.02
98 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (96 bp):
TCTTACACTGGCTCACATATCGAGGCCAAAGCCATGTCCCAGACATGGCCTTACACCAGCTCTTG
CATAAATACCAATGCCATGTTCCAAACAAGG
Found at i:57619915 original size:46 final size:46
Alignment explanation
Indices: 57619862--57620122 Score: 232
Period size: 46 Copynumber: 5.7 Consensus size: 46
57619852 AGATTTGTGT
57619862 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATA
* * * *
57619908 GCCAGTGTAGGACTATGTCTGGGACATGGCAT-TG--GCATTGA-GACGA
1 GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCAGCCACATT-ATGA-TA
* * *
57619954 GGGCTAATGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATA
* * * * * *
57620002 GCCAGTGTAAGACATGTTTGGGATATGCATCGGCCTCGA-GATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGATA
* * * *
57620048 GCCAGTGTCAGACATGTCTGGGACATGCGTCAGCTACGA-GATG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGATA
*
57620092 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC
57620123 GGCATGGTTA
Statistics
Matches: 176, Mismatches: 28, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
44 28 0.16
45 7 0.04
46 89 0.51
47 29 0.16
48 17 0.10
49 6 0.03
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATA
Found at i:57619999 original size:94 final size:92
Alignment explanation
Indices: 57619862--57620127 Score: 313
Period size: 94 Copynumber: 2.9 Consensus size: 92
57619852 AGATTTGTGT
* *
57619862 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCCAGTGTAGGACTATGTC
1 GCCAATGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCCAGTGTAAGAC-ATGTC
* * *
57619927 TGGGACATGGCATTGGCATTGAGACGAGG
65 TGGGACAT-GCATCGGCATCGAGACGAGA
* * *
57619956 GCTAATGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACATGTTT
1 GCCAATGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCCAGTGTAAGACATGTCT
* * * **
57620021 GGGATATGCATCGGCCTCGAGATGTTA
66 GGGACATGCATCGGCATCGAGACGAGA
* * * * * *
57620048 GCCAGTGTCAGACATGTCTGGGACATGCGTCAGCTACGA-GATG-T-GCTAGTGTAAGACATGTC
1 GCCAATGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGATAGCCAGTGTAAGACATGTC
57620110 TGGGACATGCATCGGCAT
65 TGGGACATGCATCGGCAT
57620128 GGTTACATGT
Statistics
Matches: 147, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
90 32 0.22
92 48 0.33
93 12 0.08
94 55 0.37
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (92 bp):
GCCAATGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCCAGTGTAAGACATGTCT
GGGACATGCATCGGCATCGAGACGAGA
Found at i:57625592 original size:30 final size:30
Alignment explanation
Indices: 57625556--57625615 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
57625546 CTAAATGCGA
57625556 TGTTTTATATGTTGAAAAATGTGATTTGGG
1 TGTTTTATATGTTGAAAAATGTGATTTGGG
57625586 TGTTTTATATGTTGAAAAATGTGATTTGGG
1 TGTTTTATATGTTGAAAAATGTGATTTGGG
57625616 CCTAGAACGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.47
Consensus pattern (30 bp):
TGTTTTATATGTTGAAAAATGTGATTTGGG
Found at i:57640398 original size:37 final size:37
Alignment explanation
Indices: 57640348--57640420 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
57640338 ACCGCAAGGT
57640348 AAACCTCAGATCTCTATCCGAAATAATTGAAAAGGGA
1 AAACCTCAGATCTCTATCCGAAATAATTGAAAAGGGA
57640385 AAACCTCAGATCTCTATCCGAAATAATTGAAAAGGG
1 AAACCTCAGATCTCTATCCGAAATAATTGAAAAGGG
57640421 CACTCCGTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.22
Consensus pattern (37 bp):
AAACCTCAGATCTCTATCCGAAATAATTGAAAAGGGA
Found at i:57642373 original size:42 final size:42
Alignment explanation
Indices: 57642314--57642398 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
57642304 CAAGGACTAA
57642314 CTCCATACCAAACTTGACTTCCCTAGTTGGAGGCAGTCCGGG
1 CTCCATACCAAACTTGACTTCCCTAGTTGGAGGCAGTCCGGG
57642356 CTCCATACCAAACTTGACTTCCCTAGTTGGAGGCAGTCCGGG
1 CTCCATACCAAACTTGACTTCCCTAGTTGGAGGCAGTCCGGG
57642398 C
1 C
57642399 AACTCTTCCG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.24
Consensus pattern (42 bp):
CTCCATACCAAACTTGACTTCCCTAGTTGGAGGCAGTCCGGG
Found at i:57645906 original size:48 final size:48
Alignment explanation
Indices: 57645832--57646068 Score: 248
Period size: 48 Copynumber: 5.0 Consensus size: 48
57645822 AAGAGGGTAA
*
57645832 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATTTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC
*
57645880 GAA-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGCATA--
1 -AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC--ACATATC
* * * * * *
57645928 AATGTCGATGCCATGTTCCAAACTTGGTCTTACACTGGCTTACATATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC
* * ** * **
57645976 AAGGCC-AAGCCATGTCTTAGACATGGTCTTACACTAGCTCTCGCATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC
* * * *
57646023 AATGGCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
57646069 CCCCTAGTAT
Statistics
Matches: 149, Mismatches: 33, Indels: 13
0.76 0.17 0.07
Matches are distributed among these distances:
46 4 0.03
47 36 0.24
48 104 0.70
49 2 0.01
50 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC
Found at i:57646013 original size:95 final size:96
Alignment explanation
Indices: 57645831--57646068 Score: 336
Period size: 95 Copynumber: 2.5 Consensus size: 96
57645821 CAAGAGGGTA
* * * * *
57645831 AAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATTTCGAAGCCGATGCCATGT
1 AAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAAGCCGAAGCCATGT
*
57645896 CCCAGACATGGTCTTACACTAGCTCTTGCAT
66 CCCAGACATGGTCTTACACTAGCTCTCGCAT
* * *
57645927 AAATGTCGATGCCATGTTCCAAACTTGGTCTTACACTGGCTTACATATC-AAGGCC-AAGCCATG
1 AAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAA-GCCGAAGCCATG
**
57645990 TCTTAGACATGGTCTTACACTAGCTCTCGCAT
65 TCCCAGACATGGTCTTACACTAGCTCTCGCAT
* *
57646022 CAATGGCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 AAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
57646069 CCCCTAGTAT
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
95 81 0.64
96 45 0.36
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (96 bp):
AAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAAGCCGAAGCCATGT
CCCAGACATGGTCTTACACTAGCTCTCGCAT
Found at i:57653161 original size:40 final size:41
Alignment explanation
Indices: 57653088--57653185 Score: 112
Period size: 40 Copynumber: 2.4 Consensus size: 41
57653078 TTAAGTTGAT
* *
57653088 ATCACACACTTAGTGCC-TTATATAGCTGGAGCTATCCCAA
1 ATCACACACTTAGTGCCATTATATAGCTGAAGCTATACCAA
* * **
57653128 CTCGCACACTTAGTGCCATT-TATAG-TCGAAGCTATATTAA
1 ATCACACACTTAGTGCCATTATATAGCT-GAAGCTATACCAA
57653168 ATCACACACTTAGTGCCA
1 ATCACACACTTAGTGCCA
57653186 AGCATAATCA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
39 1 0.02
40 45 0.94
41 2 0.04
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.29
Consensus pattern (41 bp):
ATCACACACTTAGTGCCATTATATAGCTGAAGCTATACCAA
Found at i:57659932 original size:28 final size:31
Alignment explanation
Indices: 57659891--57659954 Score: 80
Period size: 28 Copynumber: 2.2 Consensus size: 31
57659881 TAGTAAAGGT
*
57659891 AAAATTATATTTTACTTCTTTAAAATATA-A
1 AAAATTATATTTTAATTCTTTAAAATATACA
* *
57659921 AAAATTA-A-TTTAATTTTTTAAAATTTACA
1 AAAATTATATTTTAATTCTTTAAAATATACA
57659950 AAAAT
1 AAAAT
57659955 ATAAATTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 16 0.53
29 7 0.23
30 7 0.23
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (31 bp):
AAAATTATATTTTAATTCTTTAAAATATACA
Found at i:57659984 original size:23 final size:23
Alignment explanation
Indices: 57659949--57660008 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
57659939 TAAAATTTAC
*
57659949 AAAAA-TATAAATTATTAAAATGAT
1 AAAAATTAT-AATT-TTAAAATCAT
**
57659973 -AAAATTATAATTTTATTATCAT
1 AAAAATTATAATTTTAAAATCAT
57659995 AAAAATTATAATTT
1 AAAAATTATAATTT
57660009 AGTTTCATCC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 7 0.23
23 21 0.68
24 3 0.10
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
AAAAATTATAATTTTAAAATCAT
Found at i:57659988 original size:25 final size:23
Alignment explanation
Indices: 57659927--57660008 Score: 62
Period size: 25 Copynumber: 3.5 Consensus size: 23
57659917 ATAAAAAATT
57659927 AATT-TAATTTT-TTAAAATTTACAA
1 AATTATAATTTTATTAAAA--TA-AA
* *
57659951 AAATATAA-ATTATTAAAATGATAA
1 AATTATAATTTTATTAAAAT-A-AA
**
57659975 AATTATAATTTTATTATCATAAA
1 AATTATAATTTTATTAAAATAAA
57659998 AATTATAATTT
1 AATTATAATTT
57660009 AGTTTCATCC
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
23 14 0.30
24 16 0.34
25 17 0.36
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.45
Consensus pattern (23 bp):
AATTATAATTTTATTAAAATAAA
Found at i:57663740 original size:27 final size:28
Alignment explanation
Indices: 57663700--57663758 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
57663690 TTTTAAGAAG
* *
57663700 TTTTAAGAAGTTTTTTAAATGTTAATAT
1 TTTTAAGAAGTTTTTAAAATGTTAAAAT
* *
57663728 TTTTAATAA-TTTTTAAAATTTTAAAAT
1 TTTTAAGAAGTTTTTAAAATGTTAAAAT
57663755 TTTT
1 TTTT
57663759 CTATTTTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 19 0.70
28 8 0.30
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (28 bp):
TTTTAAGAAGTTTTTAAAATGTTAAAAT
Found at i:57663741 original size:10 final size:10
Alignment explanation
Indices: 57663675--57663784 Score: 62
Period size: 9 Copynumber: 11.9 Consensus size: 10
57663665 ATATTTTATG
57663675 ATAATTTTATA
1 ATAATTTT-TA
57663686 ATAA-TTTTA
1 ATAATTTTTA
* *
57663695 AGAAGTTTTA
1 ATAATTTTTA
*
57663705 AGAAGTTTTT-
1 ATAA-TTTTTA
* *
57663715 -TAAATGTTA
1 ATAATTTTTA
57663724 AT-ATTTTTA
1 ATAATTTTTA
57663733 ATAATTTTTA
1 ATAATTTTTA
57663743 A-AA-TTTTA
1 ATAATTTTTA
57663751 A-AATTTTT-
1 ATAATTTTTA
* *
57663759 CT-ATTTTAA
1 ATAATTTTTA
57663768 AT-ATTTTT-
1 ATAATTTTTA
57663776 ATAATTTTT
1 ATAATTTTT
57663785 CCATATAAAT
Statistics
Matches: 79, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
8 18 0.23
9 32 0.41
10 21 0.27
11 8 0.10
ACGTcount: A:0.38, C:0.01, G:0.05, T:0.56
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:57663793 original size:25 final size:26
Alignment explanation
Indices: 57663746--57663804 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
57663736 ATTTTTAAAA
* * *
57663746 TTTTAAAATTTTTCTATTTTAAATAT
1 TTTTATAATTTTTCCATTATAAATAT
*
57663772 TTTTATAATTTTTCCA-TATAAATTT
1 TTTTATAATTTTTCCATTATAAATAT
57663797 TTTTATAA
1 TTTTATAA
57663805 GTTTAATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 15 0.52
26 14 0.48
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (26 bp):
TTTTATAATTTTTCCATTATAAATAT
Found at i:57664267 original size:15 final size:15
Alignment explanation
Indices: 57664249--57664295 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
57664239 TTTTTTTTCT
*
57664249 TTAGGGTTTTTAGGG
1 TTAGGGTTTTTAAGG
*
57664264 TTA-GGTTATTTAAAG
1 TTAGGGTT-TTTAAGG
*
57664279 TTAGAGTTTTTAAGG
1 TTAGGGTTTTTAAGG
57664294 TT
1 TT
57664296 TGCGTATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 4 0.15
15 19 0.73
16 3 0.12
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (15 bp):
TTAGGGTTTTTAAGG
Found at i:57664320 original size:16 final size:17
Alignment explanation
Indices: 57664285--57664320 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
57664275 AAAGTTAGAG
*
57664285 TTTTTAAGGTTTGCGTA
1 TTTTTAAGGTTTGCGGA
57664302 TTTTTAAGGTTTG-GGA
1 TTTTTAAGGTTTGCGGA
57664318 TTT
1 TTT
57664321 CGAGTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.17, C:0.03, G:0.25, T:0.56
Consensus pattern (17 bp):
TTTTTAAGGTTTGCGGA
Found at i:57666307 original size:40 final size:40
Alignment explanation
Indices: 57666262--57666428 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
57666252 CGGAATATAA
57666262 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
57666302 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
57666342 CCGGACATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
57666382 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
57666421 CCGGATAT
1 CCGGATAT
57666429 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57667642 original size:58 final size:59
Alignment explanation
Indices: 57667548--57667667 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 59
57667538 ATCCTCCCCT
57667548 TTTCCTTAGTAATTTCGGCCAAGAAGATGAGAAAGGATGAACA-AATTTTTTTCTTTTC
1 TTTCCTTAGTAATTTCGGCCAAGAAGATGAGAAAGGATGAACATAATTTTTTTCTTTTC
*** ** *
57667606 TTTCCTTAGTACA-TTCGGCCAAGCCTATG-GAGAAGGATGAACATTTTTTTTTTTTTTTC
1 TTTCCTTAGTA-ATTTCGGCCAAGAAGATGAGA-AAGGATGAACATAATTTTTTTCTTTTC
57667665 TTT
1 TTT
57667668 TTCATATCTT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
57 2 0.04
58 35 0.66
59 16 0.30
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (59 bp):
TTTCCTTAGTAATTTCGGCCAAGAAGATGAGAAAGGATGAACATAATTTTTTTCTTTTC
Found at i:57674236 original size:40 final size:40
Alignment explanation
Indices: 57674191--57674357 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
57674181 CGGAATATAA
57674191 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
57674231 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
57674271 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
57674311 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
57674350 CCGGATAT
1 CCGGATAT
57674358 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57674341 original size:80 final size:79
Alignment explanation
Indices: 57674207--57674357 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
57674197 ATAATCACGT
*
57674207 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
57674272 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
57674287 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
57674350 CCGGATAT
64 CCGGATAT
57674358 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:57678025 original size:92 final size:92
Alignment explanation
Indices: 57677914--57678083 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
57677904 CGCCCTAAGT
* *
57677914 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57677979 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
57678006 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57678071 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57678084 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:57678080 original size:46 final size:46
Alignment explanation
Indices: 57677909--57678080 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
57677899 TAACCCGCCC
* * *
57677909 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
57677955 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
57678001 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
57678047 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57678081 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:57678099 original size:46 final size:46
Alignment explanation
Indices: 57677911--57678099 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
57677901 ACCCGCCCTA
* ** * *
57677911 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
57677956 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
57678004 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
57678049 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
57678095 AGTGA
1 AGTGA
57678100 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:57684979 original size:29 final size:28
Alignment explanation
Indices: 57684922--57684994 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 28
57684912 AAAATTGTAC
*
57684922 AGCACTTAAGTGTGCGAGTTTGATTATAT
1 AGCAC-TAAGTGTGCGAGTTTGATCATAT
57684951 AGCACTAAGTGTGCGAG-TTGAATACATAT
1 AGCACTAAGTGTGCGAGTTTG-AT-CATAT
57684980 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
57684995 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 3 0.07
28 14 0.34
29 24 0.59
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:57692743 original size:28 final size:28
Alignment explanation
Indices: 57692674--57692774 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
57692664 GACAAGAATG
* * * *
57692674 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
57692704 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
57692732 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
57692761 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
57692775 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:57706563 original size:43 final size:43
Alignment explanation
Indices: 57706516--57706631 Score: 157
Period size: 43 Copynumber: 2.7 Consensus size: 43
57706506 TATCACTTAT
*
57706516 CGATGCCAATGTCCCAGACATGATCTTACACGA-AATCA-TATAA
1 CGATGCCAATGTCCCAGACATGATCTTACAC-ATAATCACAAT-A
57706559 CGATGCCAATGTCCCAGACAT-AGTCTTACACATAATCACAATA
1 CGATGCCAATGTCCCAGACATGA-TCTTACACATAATCACAATA
* *
57706602 CAATGCCAATGTCCCAGACATGGTCTTACA
1 CGATGCCAATGTCCCAGACATGATCTTACA
57706632 TGTAAACACA
Statistics
Matches: 66, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
42 2 0.03
43 62 0.94
44 2 0.03
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACATGATCTTACACATAATCACAATA
Found at i:57709612 original size:40 final size:40
Alignment explanation
Indices: 57709537--57709668 Score: 151
Period size: 40 Copynumber: 3.3 Consensus size: 40
57709527 TCTTCAGAAT
* * * *
57709537 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGGTATAAGCACTAGCACAAATGCCTTCGGGTC
* *
57709576 TTAACCCGGGTAT-AGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGGTATAAGC-ACTAGCACAAATGCCTTCGGGTC
* * * *
57709616 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGGTATAAGCACTAGCACAAATGCCTTCGGGTC
57709656 TTAGCCCGGGTAT
1 TTAGCCCGGGTAT
57709669 CATTCAAATG
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
39 5 0.06
40 70 0.91
41 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGGTATAAGCACTAGCACAAATGCCTTCGGGTC
Found at i:57717644 original size:21 final size:21
Alignment explanation
Indices: 57717602--57717644 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
57717592 TATAACATTT
*
57717602 ATCAAACATTCAATATCGCAA
1 ATCAAACATTCAATATCACAA
*
57717623 ATCAATCATTCACATA-CACAA
1 ATCAAACATTCA-ATATCACAA
57717644 A
1 A
57717645 GTCCCTTAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.49, C:0.26, G:0.02, T:0.23
Consensus pattern (21 bp):
ATCAAACATTCAATATCACAA
Found at i:57722944 original size:8 final size:8
Alignment explanation
Indices: 57722931--57722971 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
57722921 CATCTACCCA
*
57722931 CTTTTCGG
1 CTTTTCAG
57722939 CTTTTCAG
1 CTTTTCAG
* *
57722947 CCTTTCTG
1 CTTTTCAG
57722955 CTTTTCAG
1 CTTTTCAG
57722963 CTTTTCAG
1 CTTTTCAG
57722971 C
1 C
57722972 CTTAGCAGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.07, C:0.29, G:0.15, T:0.49
Consensus pattern (8 bp):
CTTTTCAG
Found at i:57722983 original size:24 final size:24
Alignment explanation
Indices: 57722931--57722983 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
57722921 CATCTACCCA
* * *
57722931 CTTTTCGGCTTTTCAGCCTTTCTG
1 CTTTTCAGCTTTTCAGCCTTGCAG
57722955 CTTTTCAGCTTTTCAGCCTTAGCAG
1 CTTTTCAGCTTTTCAGCCTT-GCAG
57722980 -TTTT
1 CTTTT
57722984 ACATCCAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.92
25 2 0.08
ACGTcount: A:0.09, C:0.26, G:0.15, T:0.49
Consensus pattern (24 bp):
CTTTTCAGCTTTTCAGCCTTGCAG
Found at i:57729883 original size:19 final size:18
Alignment explanation
Indices: 57729846--57729889 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
57729836 ATACATACAG
57729846 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
57729863 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
57729882 TACTAATT
1 TAATAATT
57729890 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:57731840 original size:13 final size:13
Alignment explanation
Indices: 57731822--57731849 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
57731812 GAAATCATAG
57731822 GTCACATGCCCGT
1 GTCACATGCCCGT
57731835 GTCACATGCCCGT
1 GTCACATGCCCGT
57731848 GT
1 GT
57731850 AAACAGGCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.36, G:0.25, T:0.25
Consensus pattern (13 bp):
GTCACATGCCCGT
Found at i:57733068 original size:47 final size:47
Alignment explanation
Indices: 57732996--57733126 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 47
57732986 CATAATTGAT
* *
57732996 AAGTACCTATTCCATGG-CCGATAGCCAAATCAAGGTAACTTATCCCA
1 AAGTACCTATACCATGGCCCG-TAGCCAAATCAAGGTAACTCATCCCA
* * **
57733043 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTTTCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
* *
57733090 AAATACCTATACCATGGCCCGTAGCTAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
57733127 TTATTCACAC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 71 0.96
48 3 0.04
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
Found at i:57737011 original size:41 final size:41
Alignment explanation
Indices: 57736926--57737019 Score: 109
Period size: 41 Copynumber: 2.3 Consensus size: 41
57736916 ACTTGACATG
* * * * *
57736926 GGTATCGATACCCAAGTTAATGTATCAACCCCATTGGCAGA
1 GGTATCGATACCCAAGTCAATGCATCAACCACATTAGCAAA
* *
57736967 GGTATCGATACCCAAGTCAATGCATCGA-TACAGTTAGCAAA
1 GGTATCGATACCCAAGTCAATGCATCAACCACA-TTAGCAAA
57737008 GGTATCGATACC
1 GGTATCGATACC
57737020 TCTCATATGA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 2 0.04
41 43 0.96
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.23
Consensus pattern (41 bp):
GGTATCGATACCCAAGTCAATGCATCAACCACATTAGCAAA
Found at i:57740160 original size:18 final size:17
Alignment explanation
Indices: 57740137--57740174 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
57740127 ATGACATACA
57740137 AAATAAATAACGAAAAAT
1 AAATAAATAA-GAAAAAT
57740155 AAATAAATAAGAAAAAT
1 AAATAAATAAGAAAAAT
57740172 AAA
1 AAA
57740175 CAAACGAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (17 bp):
AAATAAATAAGAAAAAT
Found at i:57741952 original size:30 final size:29
Alignment explanation
Indices: 57741895--57741952 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
57741885 CAAATAGCCG
*
57741895 AAGCTAGTTAAATCGCACATTTAGTGCCT
1 AAGCTAGTTAAATCGCACACTTAGTGCCT
* *
57741924 AAGCTAGTTTAAATCGCATACTTGGTGCC
1 AAGCTAG-TTAAATCGCACACTTAGTGCC
57741953 AAAACTTTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCT
Found at i:57751924 original size:29 final size:29
Alignment explanation
Indices: 57751891--57751982 Score: 148
Period size: 29 Copynumber: 3.2 Consensus size: 29
57751881 GTGACGAGAT
57751891 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
57751920 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
57751949 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
57751978 CGGCA
1 TGGCA
57751983 TTGGGTGTGC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:57754093 original size:40 final size:39
Alignment explanation
Indices: 57753912--57754063 Score: 223
Period size: 39 Copynumber: 3.9 Consensus size: 39
57753902 AATGTTCGAG
57753912 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
57753951 TAATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * * * *
57753990 TGATACCCGGGCTAAGCTCGAAGGCAATTGCGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
57754029 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
57754064 GGTTACCATA
Statistics
Matches: 100, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 85 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:57761441 original size:39 final size:39
Alignment explanation
Indices: 57761398--57761528 Score: 181
Period size: 39 Copynumber: 3.3 Consensus size: 39
57761388 CGAGTGATAT
*
57761398 AGGCAATTGTGTGAGCTATGATATCCGGGCTAAGCCCGA
1 AGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCCCGA
* *
57761437 AGGCAATTGTGCGAGCTATGATACCCGGGCTAAGCTCGA
1 AGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCCCGA
* * * *
57761476 AGGCAATTGTGGGAGTTGTGATATCCGGGTTAAGTCCCGA
1 AGGCAATTGTGCGAGCTATGATATCCGGGCTAAG-CCCGA
*
57761516 AGGCATTTGTGCG
1 AGGCAATTGTGCG
57761529 GGTTACCATA
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 65 0.81
40 15 0.19
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (39 bp):
AGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCCCGA
Found at i:57761544 original size:40 final size:39
Alignment explanation
Indices: 57761398--57761558 Score: 153
Period size: 39 Copynumber: 4.1 Consensus size: 39
57761388 CGAGTGATAT
* * * *
57761398 AGGCAATTGTGTGAGCTATGATATCCGGGCTAAGCCCGA
1 AGGCAATTGTGCGGGTTATGATAACCGGGCTAAGCCCGA
* * * *
57761437 AGGCAATTGTGCGAGCTATGATACCCGGGCTAAGCTCGA
1 AGGCAATTGTGCGGGTTATGATAACCGGGCTAAGCCCGA
* * *
57761476 AGGCAATTGTG-GGAGTTGTGATATCCGGGTTAAGTCCCGA
1 AGGCAATTGTGCGG-GTTATGATAACCGGGCTAAG-CCCGA
* ** *
57761516 AGGCATTTGTGCGGGTTACCATAACCGGGCTATGTCCCGA
1 AGGCAATTGTGCGGGTTATGATAACCGGGCTAAG-CCCGA
57761556 AGG
1 AGG
57761559 TGTTTTGAAC
Statistics
Matches: 103, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
38 1 0.01
39 63 0.61
40 37 0.36
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
AGGCAATTGTGCGGGTTATGATAACCGGGCTAAGCCCGA
Found at i:57761544 original size:79 final size:78
Alignment explanation
Indices: 57761398--57761547 Score: 201
Period size: 79 Copynumber: 1.9 Consensus size: 78
57761388 CGAGTGATAT
* ** *
57761398 AGGCAATTGTGTGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCC
1 AGGCAATTGTGGGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACC
57761463 GGGCTAAGCTCGA
66 GGGCTAAGCTCGA
* * * * * *
57761476 AGGCAATTGTGGGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAAC
1 AGGCAATTGTGGGAGCTATGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAAC
57761541 CGGGCTA
65 CGGGCTA
57761548 TGTCCCGAAG
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
78 30 0.49
79 31 0.51
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (78 bp):
AGGCAATTGTGGGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACC
GGGCTAAGCTCGA
Found at i:57763016 original size:29 final size:29
Alignment explanation
Indices: 57762957--57763014 Score: 98
Period size: 30 Copynumber: 2.0 Consensus size: 29
57762947 GTTACAGCCG
*
57762957 AAGCTAGTTAAATCGCGCACTTAGTGCCC
1 AAGCTAGTTAAATCGCACACTTAGTGCCC
57762986 AAGCTAGTTTAAATCGCACACTTAGTGCC
1 AAGCTAG-TTAAATCGCACACTTAGTGCC
57763015 AAAACTTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCC
Found at i:57772106 original size:27 final size:26
Alignment explanation
Indices: 57772076--57772161 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 26
57772066 GAACAGTAAA
* *
57772076 TGTGATAGAGTCACCAGATACAGATAT
1 TGTGGTAGAGCCACCAGA-ACAGATAT
57772103 TGTGGTAGAGCCACCAGAACAGATATT
1 TGTGGTAGAGCCACCAGAACAGATA-T
* *
57772130 TGTGGCATAGCCACCAGAACAGATATT
1 TGTGGTAGAGCCACCAGAACAGATA-T
57772157 TGTGG
1 TGTGG
57772162 CTTAGCCACT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
26 7 0.13
27 47 0.87
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (26 bp):
TGTGGTAGAGCCACCAGAACAGATAT
Found at i:57772162 original size:27 final size:27
Alignment explanation
Indices: 57772087--57772175 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 27
57772077 GTGATAGAGT
* *
57772087 CACCAGATACAGATA-TTGTGGTAGAGC
1 CACCAGA-ACAGATATTTGTGGCATAGC
57772114 CACCAGAACAGATATTTGTGGCATAGC
1 CACCAGAACAGATATTTGTGGCATAGC
*
57772141 CACCAGAACAGATATTTGTGGCTTAGC
1 CACCAGAACAGATATTTGTGGCATAGC
*
57772168 CACTAGAA
1 CACCAGAA
57772176 TGCTTCCTCC
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
26 7 0.12
27 50 0.88
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCATAGC
Found at i:57777492 original size:22 final size:22
Alignment explanation
Indices: 57777439--57777482 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
57777429 GAAAATAATC
* *
57777439 AAAATAAATCAAAATTAATTAT
1 AAAATGAATTAAAATTAATTAT
57777461 AAAATGAATTAAAATTAATTAT
1 AAAATGAATTAAAATTAATTAT
57777483 TTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (22 bp):
AAAATGAATTAAAATTAATTAT
Found at i:57778998 original size:28 final size:28
Alignment explanation
Indices: 57778956--57779050 Score: 118
Period size: 28 Copynumber: 3.4 Consensus size: 28
57778946 GCTACGTATA
*
57778956 GCACATAGTGTGCAAGATATTGAATATG
1 GCACTTAGTGTGCAAGATATTGAATATG
* * * *
57778984 ACATTTAGTGCGCAAGATATTGATTATG
1 GCACTTAGTGTGCAAGATATTGAATATG
** *
57779012 GCACTTAGTGTGTGAGACATTGAATATG
1 GCACTTAGTGTGCAAGATATTGAATATG
57779040 GCACTTAGTGT
1 GCACTTAGTGT
57779051 ATGAGGCATT
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.33
Consensus pattern (28 bp):
GCACTTAGTGTGCAAGATATTGAATATG
Found at i:57779055 original size:28 final size:28
Alignment explanation
Indices: 57779002--57779078 Score: 109
Period size: 28 Copynumber: 2.8 Consensus size: 28
57778992 TGCGCAAGAT
* *
57779002 ATTGATTATGGCACTTAGTGTGTGAGAC
1 ATTGAATATGGCACTTAGTGTATGAGAC
*
57779030 ATTGAATATGGCACTTAGTGTATGAGGC
1 ATTGAATATGGCACTTAGTGTATGAGAC
**
57779058 ATTGGGTATGGCACTTAGTGT
1 ATTGAATATGGCACTTAGTGT
57779079 GCGAAATATC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.25, C:0.10, G:0.30, T:0.35
Consensus pattern (28 bp):
ATTGAATATGGCACTTAGTGTATGAGAC
Found at i:57780953 original size:26 final size:26
Alignment explanation
Indices: 57780924--57781001 Score: 74
Period size: 26 Copynumber: 3.1 Consensus size: 26
57780914 TTAGGTCACG
57780924 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
* * * *
57780950 TGTGTACG-A-GATAGT-TAGGTTGC-A
1 TGTGTA-GTACTA-AGTGCAGGCTACTA
57780974 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
57781000 TG
1 TG
57781002 CGTACCAGAT
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
23 1 0.03
24 11 0.29
25 12 0.32
26 13 0.34
27 1 0.03
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGCAGGCTACTA
Found at i:57780984 original size:50 final size:51
Alignment explanation
Indices: 57780868--57781013 Score: 168
Period size: 50 Copynumber: 2.9 Consensus size: 51
57780858 ATTGTGAGAA
* * * ** *
57780868 CACATGTGTAGTAATATGTGCAGCCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAG-TTTAGGT
* *
57780920 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACGAGATAG-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGTTTAGGT
** * *
57780970 TGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAG
57781014 CTTCAGTTAC
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
50 45 0.56
52 36 0.44
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.32
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGTTTAGGT
Found at i:57786009 original size:43 final size:43
Alignment explanation
Indices: 57785948--57786033 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
57785938 AGTGGGAGAT
57785948 AGAGTTTATTATCTCTTATTGTACAATATGCTAAGATAGTATA
1 AGAGTTTATTATCTCTTATTGTACAATATGCTAAGATAGTATA
57785991 AGAGTTTATTATCTCTTATTGTACAATATGCTAAGATAGTATA
1 AGAGTTTATTATCTCTTATTGTACAATATGCTAAGATAGTATA
57786034 TTATCTTCTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (43 bp):
AGAGTTTATTATCTCTTATTGTACAATATGCTAAGATAGTATA
Found at i:57789030 original size:93 final size:93
Alignment explanation
Indices: 57788918--57789089 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57788908 GCCCATAAGT
* *
57788918 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57788983 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
57789011 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57789076 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
57789090 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57789085 original size:46 final size:46
Alignment explanation
Indices: 57788910--57789085 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
57788900 TGTAACCCGC
* * *
57788910 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
57788956 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
57789006 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
57789049 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57789086 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:57791508 original size:30 final size:30
Alignment explanation
Indices: 57791464--57791552 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
57791454 CAAAGATAAC
57791464 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
57791493 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
57791523 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
57791553 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:57791512 original size:15 final size:15
Alignment explanation
Indices: 57791464--57791543 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
57791454 CAAAGATAAC
*
57791464 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
57791478 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
57791493 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
57791508 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
57791523 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
57791538 AAGAAA
1 AAGAAA
57791544 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:57791552 original size:15 final size:15
Alignment explanation
Indices: 57791475--57791552 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
57791465 AGAAAACCGA
57791475 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
57791490 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
57791504 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
57791519 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
57791535 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
57791550 ATA
1 ATA
57791553 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:57794615 original size:93 final size:93
Alignment explanation
Indices: 57794503--57794674 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57794493 GCCCATAAGT
* *
57794503 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57794568 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
57794596 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57794661 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
57794675 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57794670 original size:46 final size:46
Alignment explanation
Indices: 57794495--57794670 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
57794485 TGTAACCCGC
* * *
57794495 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
57794541 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
57794591 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
57794634 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57794671 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:57808170 original size:15 final size:15
Alignment explanation
Indices: 57808152--57808195 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
57808142 GAAGCCCAGA
57808152 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
57808167 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
**
57808182 ATACGGAAATCCAA
1 ATAAAGAAATCCAA
57808196 TTTACAGCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.55, C:0.16, G:0.14, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:57815149 original size:29 final size:28
Alignment explanation
Indices: 57815089--57815207 Score: 96
Period size: 29 Copynumber: 4.1 Consensus size: 28
57815079 GTGAGCATGA
* *
57815089 ATAT-AAGGTGATTTGGGCCTAACTGGCT
1 ATATAAAGGTGAATTGGGCCTAA-TGGCC
* *
57815117 ATATAAAGGTGATTTGGGCCTAATAAGCC
1 ATATAAAGGTGAATTGGGCCTAAT-GGCC
* ** *
57815146 ATATGAATATGAATTGGGCCTGATGGGCC
1 ATATAAAGGTGAATTGGGCCTAAT-GGCC
* * *
57815175 ATATAAATGTGAATTGGGGCTGATGGGCC
1 ATATAAAGGTGAATTGGGCCTAAT-GGCC
57815204 ATAT
1 ATAT
57815208 GAATGAGATG
Statistics
Matches: 77, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 5 0.06
29 72 0.94
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (28 bp):
ATATAAAGGTGAATTGGGCCTAATGGCC
Found at i:57815163 original size:58 final size:58
Alignment explanation
Indices: 57815101--57815211 Score: 134
Period size: 58 Copynumber: 1.9 Consensus size: 58
57815091 ATAAGGTGAT
* *
57815101 TTGGGCCTAACT-GGCTATATAAAGGTGATTTGGGCCTAATAAGCCATATGAATATGAA
1 TTGGGCCTAA-TGGGCCATATAAAGGTGAATTGGGCCTAATAAGCCATATGAATATGAA
* * * * **
57815159 TTGGGCCTGATGGGCCATATAAATGTGAATTGGGGCTGATGGGCCATATGAAT
1 TTGGGCCTAATGGGCCATATAAAGGTGAATTGGGCCTAATAAGCCATATGAAT
57815212 GAGATGGGCG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
57 1 0.02
58 43 0.98
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (58 bp):
TTGGGCCTAATGGGCCATATAAAGGTGAATTGGGCCTAATAAGCCATATGAATATGAA
Found at i:57815212 original size:29 final size:29
Alignment explanation
Indices: 57815125--57815212 Score: 113
Period size: 29 Copynumber: 3.0 Consensus size: 29
57815115 CTATATAAAG
* * **
57815125 GTGATTTGGGCCTAATAAGCCATATGAAT
1 GTGAATTGGGCCTGATGGGCCATATGAAT
* *
57815154 ATGAATTGGGCCTGATGGGCCATATAAAT
1 GTGAATTGGGCCTGATGGGCCATATGAAT
*
57815183 GTGAATTGGGGCTGATGGGCCATATGAAT
1 GTGAATTGGGCCTGATGGGCCATATGAAT
57815212 G
1 G
57815213 AGATGGGCGA
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.28, C:0.12, G:0.31, T:0.28
Consensus pattern (29 bp):
GTGAATTGGGCCTGATGGGCCATATGAAT
Found at i:57819746 original size:29 final size:29
Alignment explanation
Indices: 57819667--57819746 Score: 133
Period size: 29 Copynumber: 2.8 Consensus size: 29
57819657 AGGTGATTTG
* * *
57819667 GGCCTAATAGGCCATATGAATATGAATTA
1 GGCCTGATGGGCCATATGAATGTGAATTA
57819696 GGCCTGATGGGCCATATGAATGTGAATTA
1 GGCCTGATGGGCCATATGAATGTGAATTA
57819725 GGCCTGATGGGCCATATGAATG
1 GGCCTGATGGGCCATATGAATG
57819747 AGATGAGCCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
GGCCTGATGGGCCATATGAATGTGAATTA
Found at i:57827377 original size:28 final size:28
Alignment explanation
Indices: 57827333--57827392 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
57827323 CGAAATCACA
*
57827333 TTGACGGACTCATACTTGTAAGATAGTC
1 TTGACGGACTCACACTTGTAAGATAGTC
* *
57827361 TTGACGGACTCCCACTTGTAAGGTAGTC
1 TTGACGGACTCACACTTGTAAGATAGTC
57827389 TTGA
1 TTGA
57827393 TGAACTATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (28 bp):
TTGACGGACTCACACTTGTAAGATAGTC
Found at i:57832323 original size:22 final size:21
Alignment explanation
Indices: 57832293--57832358 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
57832283 TACAAATAAA
57832293 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
57832315 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
57832336 ATCT--AAGATTCCATATCAT
1 ATCTCCAAGATTACAGATCAT
57832355 ATCT
1 ATCT
57832359 AAGATTGTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
19 18 0.45
21 10 0.25
22 12 0.30
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:57832345 original size:19 final size:19
Alignment explanation
Indices: 57832310--57832407 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
57832300 AGATTACAAG
57832310 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
57832331 ATCATATCTAAGATTCCAT
1 ATCATATCTAAGATTGCAT
57832350 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
57832367 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
57832386 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
57832405 ATC
1 ATC
57832408 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
19 47 0.64
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:57832374 original size:36 final size:37
Alignment explanation
Indices: 57832310--57832407 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
57832300 AGATTACAAG
57832310 ATCATATCTTCAAGATTGCATATCATATCTAAGATTCCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTCCAT
*
57832350 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTCCAT
57832386 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
57832408 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTCCAT
Found at i:57833474 original size:84 final size:84
Alignment explanation
Indices: 57833266--57833631 Score: 573
Period size: 84 Copynumber: 4.4 Consensus size: 84
57833256 TCTGCTATAC
* *
57833266 TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA-TCTTCGATCTGCTCCACTGCTGCTT
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-AGTCTTCGATCTGCTCCACTACTGCTT
57833330 AGGGAGATAAGATCTG----
65 AGGGAGATAAGATCTGCAAA
* * *
57833346 -TGAACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATATGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
57833410 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* * *
57833429 TTTAACCTGTTACCCTACCGCTTAGGGGATTAAGGCGAGTATTCGATCTGATCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
57833494 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* * *
57833513 TTTAACCTGTTACCCTACTACTTAAGGGATTAAGGCGAGTCTTTGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
*
57833578 GGGAGATAAGATTTGCAAA
66 GGGAGATAAGATCTGCAAA
57833597 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGG
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGG
57833632 TGCTAAATTT
Statistics
Matches: 260, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
78 1 0.00
79 72 0.28
84 187 0.72
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (84 bp):
TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTGCAAA
Done.