Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 206 of 427
Found at i:57833496 original size:41 final size:41
Alignment explanation
Indices: 57833280--57833580 Score: 133
Period size: 41 Copynumber: 7.3 Consensus size: 41
57833270 ACCTGTTACC
* * *
57833280 CTACTGCTTAGGGGGTTAAGGCGCA-TCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGCG-AGTATTTGATCTGCTCCA
* * * * *
57833321 CTGCTGCTTAGGGAGA-TAA---GA-TCTGTGAACCTGTTACC-
1 CTACTGCTTAGGG-GATTAAGGCGAGTATTTG-ATCTGCT-CCA
* * * *
57833359 CTACTGCTTAAGGGATTAAGGCGAGTCTTCGATATGCTCCA
1 CTACTGCTTAGGGGATTAAGGCGAGTATTTGATCTGCTCCA
* * * * *
57833400 CTACTGCTTAGGGAGA-TAAGATCTGCA-AATTTAACCTGTTACC-
1 CTACTGCTTAGGG-GATTAAG-GC-G-AGTATTTGATCTGCT-CCA
* * *
57833443 CTACCGCTTAGGGGATTAAGGCGAGTATTCGATCTGATCCA
1 CTACTGCTTAGGGGATTAAGGCGAGTATTTGATCTGCTCCA
* * * * *
57833484 CTACTGCTTAGGGAGA-TAAGATCTGCA-AATTTAACCTGTTACC-
1 CTACTGCTTAGGG-GATTAAG-GC-G-AGTATTTGATCTGCT-CCA
* * *
57833527 CTACTACTTAAGGGATTAAGGCGAGTCTTTGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGCGAGTATTTGATCTGCTCCA
57833568 CTACTGCTTAGGG
1 CTACTGCTTAGGG
57833581 AGATAAGATT
Statistics
Matches: 189, Mismatches: 46, Indels: 50
0.66 0.16 0.18
Matches are distributed among these distances:
37 7 0.04
38 20 0.11
39 2 0.01
40 8 0.04
41 82 0.43
42 17 0.09
43 47 0.25
44 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30
Consensus pattern (41 bp):
CTACTGCTTAGGGGATTAAGGCGAGTATTTGATCTGCTCCA
Found at i:57833616 original size:43 final size:42
Alignment explanation
Indices: 57833400--57833623 Score: 162
Period size: 43 Copynumber: 5.3 Consensus size: 42
57833390 ATATGCTCCA
57833400 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGAGATAAGAT-TGCAAATTTAACCTGTTACC
* * ** * *
57833443 CTACCGCTTAGGG-GATTAAG---GCGAGTATTCGATCTGAT-CC
1 CTACTGCTTAGGGAGA-TAAGATTGC-A-AATTTAACCTGTTACC
57833483 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGAT-TGCAAATTTAACCTGTTACC
* * ** * * *
57833527 CTACTACTTAAGGGA-TTAAG---GCGAGTCTTTGATCTGCT-CC
1 CTACTGCTT-AGGGAGATAAGATTGC-A-AATTTAACCTGTTACC
57833567 ACTACTGCTTAGGGAGATAAGATTTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGA-TTGCAAATTTAACCTGTTACC
57833611 CTACTGCTTAGGG
1 CTACTGCTTAGGG
57833624 GATTAAGGTG
Statistics
Matches: 135, Mismatches: 26, Indels: 40
0.67 0.13 0.20
Matches are distributed among these distances:
39 4 0.03
40 11 0.08
41 44 0.33
42 4 0.03
43 57 0.42
44 11 0.08
45 4 0.03
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (42 bp):
CTACTGCTTAGGGAGATAAGATTGCAAATTTAACCTGTTACC
Found at i:57840204 original size:22 final size:21
Alignment explanation
Indices: 57840174--57840220 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
57840164 TACAAATTAA
57840174 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
57840196 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
57840217 ATCT
1 ATCT
57840221 AAAATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:57840229 original size:19 final size:19
Alignment explanation
Indices: 57840191--57840269 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
57840181 AGATTACAAG
57840191 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
57840212 ATCATATCTAAAATTGCAT
1 ATCATATCTAAGATTGCAT
57840231 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
57840248 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
57840267 ATC
1 ATC
57840270 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 17 0.31
19 28 0.52
20 1 0.02
21 8 0.15
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:57840255 original size:36 final size:39
Alignment explanation
Indices: 57840191--57840269 Score: 119
Period size: 36 Copynumber: 2.1 Consensus size: 39
57840181 AGATTACAAG
57840191 ATCATATCTTCAAGATTGCATATCATATCTAAAATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAAATTGCAT
*
57840231 ATCATATC-T-AAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAAATTGCAT
57840267 ATC
1 ATC
57840270 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
36 22 0.58
38 7 0.18
39 1 0.03
40 8 0.21
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGATATCATATCTAAAATTGCAT
Found at i:57840269 original size:14 final size:15
Alignment explanation
Indices: 57840232--57840269 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
57840222 AAATTGCATA
57840232 TCATATCTAAGATTG
1 TCATATCTAAGATTG
57840247 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
57840264 -CATATC
1 TCATATC
57840270 CTTAAAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:57842613 original size:39 final size:38
Alignment explanation
Indices: 57842556--57842842 Score: 297
Period size: 39 Copynumber: 7.4 Consensus size: 38
57842546 CACGACATGA
* *
57842556 AAGTGCTATCAGGAGTACCAAAGTACAACAGGGGCACGT
1 AAGTGCGATCAGGGGTACCAAAGTACAACA-GGGCACGT
57842595 AAGTGCGATCAGGGGTACCAAAGTACAACAAGGGCACGT
1 AAGTGCGATCAGGGGTACCAAAGTACAAC-AGGGCACGT
* * * * *
57842634 AAGTGCAATTAGGGGTACCGAAGTACAACAAGGCACAT
1 AAGTGCGATCAGGGGTACCAAAGTACAACAGGGCACGT
* * *
57842672 CAA-TGCGATCAAGGGTACCGAAGTAGAACAGGGGCACGT
1 -AAGTGCGATCAGGGGTACCAAAGTACAACA-GGGCACGT
* * ** * * *
57842711 AAGTGTGACCAGGGGTACTGAAGTAGAGCTGGGGCACGT
1 AAGTGCGATCAGGGGTACCAAAGTACAAC-AGGGCACGT
* * * * *
57842750 AATTGCGATCACGGGTATCAAAGTACAATAAGGCACGT
1 AAGTGCGATCAGGGGTACCAAAGTACAACAGGGCACGT
* *
57842788 AAATGCGATCAGGGATACCAAAGTACAACAGGGCACGT
1 AAGTGCGATCAGGGGTACCAAAGTACAACAGGGCACGT
*
57842826 AAGTGCGATCAAGGGTA
1 AAGTGCGATCAGGGGTA
57842843 TAATTATATA
Statistics
Matches: 203, Mismatches: 40, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
38 85 0.42
39 117 0.58
40 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.30, T:0.16
Consensus pattern (38 bp):
AAGTGCGATCAGGGGTACCAAAGTACAACAGGGCACGT
Found at i:57842618 original size:20 final size:19
Alignment explanation
Indices: 57842555--57842618 Score: 56
Period size: 20 Copynumber: 3.3 Consensus size: 19
57842545 CCACGACATG
*
57842555 AAAGTGCTATCAGGAGTACC
1 AAAGTGC-ATCAGGGGTACC
* * * *
57842575 AAAGTACAACAGGGGCACG
1 AAAGTGCATCAGGGGTACC
*
57842594 TAAGTGCGATCAGGGGTACC
1 AAAGTGC-ATCAGGGGTACC
57842614 AAAGT
1 AAAGT
57842619 ACAACAAGGG
Statistics
Matches: 32, Mismatches: 11, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
19 13 0.41
20 19 0.59
ACGTcount: A:0.36, C:0.19, G:0.30, T:0.16
Consensus pattern (19 bp):
AAAGTGCATCAGGGGTACC
Found at i:57842628 original size:20 final size:19
Alignment explanation
Indices: 57842565--57842663 Score: 63
Period size: 19 Copynumber: 5.1 Consensus size: 19
57842555 AAAGTGCTAT
*
57842565 CAGGAGTACCAAAGTACAA
1 CAGGGGTACCAAAGTACAA
* ** * *
57842584 CAGGGGCACGTAAGTGCGAT
1 CAGGGGTACCAAAGTAC-AA
57842604 CAGGGGTACCAAAGTACAA
1 CAGGGGTACCAAAGTACAA
* * ** *
57842623 CAAGGGCACGTAAGTGCAA
1 CAGGGGTACCAAAGTACAA
* *
57842642 TTAGGGGTACCGAAGTACAA
1 -CAGGGGTACCAAAGTACAA
57842662 CA
1 CA
57842664 AGGCACATCA
Statistics
Matches: 55, Mismatches: 23, Indels: 4
0.67 0.28 0.05
Matches are distributed among these distances:
19 28 0.51
20 27 0.49
ACGTcount: A:0.37, C:0.20, G:0.29, T:0.13
Consensus pattern (19 bp):
CAGGGGTACCAAAGTACAA
Found at i:57842696 original size:77 final size:77
Alignment explanation
Indices: 57842556--57842842 Score: 317
Period size: 77 Copynumber: 3.7 Consensus size: 77
57842546 CACGACATGA
* * *
57842556 AAGTGCTATCAGGAGTACCAAAGTACAACAGGGGCACGTAAGTGCGATCAGGGGTACCAAAGTAC
1 AAGTGCGATCAGGGGTACCAAAGTACAACA-GGGCACGTAAGTGCGATCAAGGGTACCAAAGTAC
57842621 AACAAGGGCACGT
65 AACAAGGGCACGT
* * * * * * *
57842634 AAGTGCAATTAGGGGTACCGAAGTACAACAAGGCACATCAA-TGCGATCAAGGGTACCGAAGTAG
1 AAGTGCGATCAGGGGTACCAAAGTACAACAGGGCACGT-AAGTGCGATCAAGGGTACCAAAGTAC
*
57842698 AACAGGGGCACGT
65 AACAAGGGCACGT
* * ** * * * * * *
57842711 AAGTGTGACCAGGGGTACTGAAGTAGAGCTGGGGCACGTAATTGCGATCACGGGTATCAAAGTAC
1 AAGTGCGATCAGGGGTACCAAAGTACAAC-AGGGCACGTAAGTGCGATCAAGGGTACCAAAGTAC
*
57842776 AATAA-GGCACGT
65 AACAAGGGCACGT
* *
57842788 AAATGCGATCAGGGATACCAAAGTACAACAGGGCACGTAAGTGCGATCAAGGGTA
1 AAGTGCGATCAGGGGTACCAAAGTACAACAGGGCACGTAAGTGCGATCAAGGGTA
57842843 TAATTATATA
Statistics
Matches: 169, Mismatches: 37, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
76 23 0.14
77 90 0.53
78 56 0.33
ACGTcount: A:0.35, C:0.19, G:0.30, T:0.16
Consensus pattern (77 bp):
AAGTGCGATCAGGGGTACCAAAGTACAACAGGGCACGTAAGTGCGATCAAGGGTACCAAAGTACA
ACAAGGGCACGT
Found at i:57842774 original size:116 final size:115
Alignment explanation
Indices: 57842563--57842842 Score: 337
Period size: 116 Copynumber: 2.4 Consensus size: 115
57842553 TGAAAGTGCT
*
57842563 ATCAGGAGTACCAAAGTACAACAGGGGCACGTAAGTGCGATCAGGGGTACCAAAGTACAACAAGG
1 ATCAGG-GTACCAAAGTACAACAGGGGCACGTAAGTGCGACCAGGGGTACCAAAGTACAACAAGG
* * * *
57842628 GCACGTAAGTGCAATTAGGGGTACCGAAGTACAACAAGGCACATCAATGCG
65 GCACGTAAGTGCAATCACGGGTACCAAAGTACAACAAGGCACATAAATGCG
* * * ** * * **
57842679 ATCAAGGGTACCGAAGTAGAACAGGGGCACGTAAGTGTGACCAGGGGTACTGAAGTAGAGCTGGG
1 ATC-AGGGTACCAAAGTACAACAGGGGCACGTAAGTGCGACCAGGGGTACCAAAGTACAACAAGG
* * * * *
57842744 GCACGTAATTGCGATCACGGGTATCAAAGTACAATAAGGCACGTAAATGCG
65 GCACGTAAGTGCAATCACGGGTACCAAAGTACAACAAGGCACATAAATGCG
* *
57842795 ATCAGGGATACCAAAGTACAACA-GGGCACGTAAGTGCGATCAAGGGTA
1 ATCAGGG-TACCAAAGTACAACAGGGGCACGTAAGTGCGACCAGGGGTA
57842843 TAATTATATA
Statistics
Matches: 138, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
115 26 0.19
116 109 0.79
117 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.30, T:0.15
Consensus pattern (115 bp):
ATCAGGGTACCAAAGTACAACAGGGGCACGTAAGTGCGACCAGGGGTACCAAAGTACAACAAGGG
CACGTAAGTGCAATCACGGGTACCAAAGTACAACAAGGCACATAAATGCG
Found at i:57844277 original size:33 final size:33
Alignment explanation
Indices: 57844235--57844300 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
57844225 TTGCAACATA
57844235 GACACGTGAAAGACATTATGAATCTTTCCTAGT
1 GACACGTGAAAGACATTATGAATCTTTCCTAGT
57844268 GACACGTGAAAGACATTATGAATCTTTCCTAGT
1 GACACGTGAAAGACATTATGAATCTTTCCTAGT
57844301 TATAACGATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (33 bp):
GACACGTGAAAGACATTATGAATCTTTCCTAGT
Found at i:57845278 original size:23 final size:21
Alignment explanation
Indices: 57845226--57845280 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 21
57845216 ATTCATATTA
57845226 TATAATAAAGGTTAAATATGT
1 TATAATAAAGGTTAAATATGT
* *
57845247 AATTAAATAATATGTTAATATATGT
1 TA-T-AATAA-AGGTTAA-ATATGT
57845272 TATAATAAA
1 TATAATAAA
57845281 ACATTAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
21 1 0.04
22 2 0.07
23 10 0.37
24 7 0.26
25 7 0.26
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (21 bp):
TATAATAAAGGTTAAATATGT
Found at i:57845539 original size:15 final size:15
Alignment explanation
Indices: 57845519--57845548 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
57845509 AATATGAAAG
57845519 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
57845534 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
57845549 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:57850989 original size:40 final size:39
Alignment explanation
Indices: 57850824--57851007 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
57850814 AAATTGAATG
* * *
57850824 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
57850864 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
57850904 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
57850944 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
57850983 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
57851008 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:57851032 original size:80 final size:81
Alignment explanation
Indices: 57850864--57851052 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
57850854 GCTGGAAATT
* * * *
57850864 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
57850929 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
57850945 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
57851008 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
57851024 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
57851053 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:57858961 original size:40 final size:39
Alignment explanation
Indices: 57858796--57858979 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
57858786 AAATTGAATG
* * *
57858796 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
57858836 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
57858876 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
57858916 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
57858955 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
57858980 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:57859004 original size:80 final size:81
Alignment explanation
Indices: 57858836--57859024 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
57858826 GCTGGAAATT
* * * *
57858836 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
57858901 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
57858917 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
57858980 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
57858996 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
57859025 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:57861597 original size:28 final size:28
Alignment explanation
Indices: 57861566--57861630 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
57861556 TTTCGCACAT
*
57861566 TAAGTGTCATTCTCAATATCTCGTACAC
1 TAAGTGCCATTCTCAATATCTCGTACAC
* *
57861594 TAAGTGCCATTCTTAATATTTCGTACAC
1 TAAGTGCCATTCTCAATATCTCGTACAC
*
57861622 TGAGTGCCA
1 TAAGTGCCA
57861631 CATTTAGTCG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (28 bp):
TAAGTGCCATTCTCAATATCTCGTACAC
Found at i:57866184 original size:29 final size:28
Alignment explanation
Indices: 57866151--57866251 Score: 103
Period size: 29 Copynumber: 3.5 Consensus size: 28
57866141 TGACGAGATC
*
57866151 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGAGCTGGAAA-ATAT
* *
57866180 GGCACTAAGTGTGCAAGCTGGAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAATAT
** * **
57866208 GGCACTGGGTGTGCGAGCTCGAAGGGTAT
1 GGCACTAAGTGTGCGAGCTGGAA-AATAT
*
57866237 GGCACTATGTGTGCG
1 GGCACTAAGTGTGCG
57866252 GCTTAAATCG
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 22 0.37
29 37 0.63
ACGTcount: A:0.25, C:0.17, G:0.36, T:0.23
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGCTGGAAAATAT
Found at i:57874192 original size:29 final size:28
Alignment explanation
Indices: 57874159--57874314 Score: 149
Period size: 27 Copynumber: 5.6 Consensus size: 28
57874149 GTGACGAGAT
*
57874159 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAA-ATA
*
57874188 TGGCACTAAGTGTGCGTGCTGG-AAATA
1 TGGCACTAAGTGTGCGAGCTGGAAAATA
57874215 TGGCACTAAGTGTGC-AGCTGGAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAAATA
* ** * **
57874242 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTGGAA-AATA
* * * *
57874271 TGGCACTATGTGTGCGGGCT--TAAATCG
1 TGGCACTAAGTGTGCGAGCTGGAAAAT-A
57874298 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
57874315 AATCGAGTAT
Statistics
Matches: 106, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
26 6 0.06
27 51 0.48
28 9 0.08
29 40 0.38
ACGTcount: A:0.24, C:0.17, G:0.35, T:0.24
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTGGAAAATA
Found at i:57878245 original size:29 final size:27
Alignment explanation
Indices: 57878180--57878250 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
57878170 ATAGTGAGTC
57878180 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
57878207 CGCACACTTAGTGCTATATGGATCAAACT
1 CGCACACTTAGTGCTATAT-AATC-AACT
57878236 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57878251 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 19 0.46
28 3 0.07
29 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:57886041 original size:28 final size:27
Alignment explanation
Indices: 57885978--57886047 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
57885968 ATAGTGAGTC
57885978 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
57886005 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
57886033 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57886048 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:57896482 original size:27 final size:27
Alignment explanation
Indices: 57896452--57896648 Score: 270
Period size: 27 Copynumber: 7.3 Consensus size: 27
57896442 CTGAAATGCT
** **
57896452 CTCGATTTGTAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
57896479 CTCGATTTATAGAATTACCGTTTCACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
57896506 CTCGATTTACAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
57896533 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
57896560 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
57896587 CTCGATTTACAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
57896614 CTC-AGTTTACAAAATTACCGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
57896641 CTCGATTT
1 CTCGATTT
57896649 TGAAATTACT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 151 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:57896565 original size:81 final size:81
Alignment explanation
Indices: 57896452--57896648 Score: 306
Period size: 81 Copynumber: 2.4 Consensus size: 81
57896442 CTGAAATGCT
* * *
57896452 CTCGATTTGTAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACA
1 CTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACA
*
57896517 AAATTACCGTTTTACC
66 AAATTACCATTTTACC
*
57896533 CTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACA
1 CTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACA
57896598 AAATTACCATTTTACC
66 AAATTACCATTTTACC
* * *
57896614 CTC-AGTTTACAAAATTACCGTTTTACCCTCGATTT
1 CTCGA-TTTATAGAATTACCATTTTACCCTCGATTT
57896649 TGAAATTACT
Statistics
Matches: 107, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
80 1 0.01
81 106 0.99
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (81 bp):
CTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACA
AAATTACCATTTTACC
Found at i:57896721 original size:54 final size:54
Alignment explanation
Indices: 57896637--57896777 Score: 153
Period size: 54 Copynumber: 2.6 Consensus size: 54
57896627 ATTACCGTTT
* * * * *
57896637 TACCCTCGATTT-TGAAATTACTAAAATACCCTTA-TAGGATAGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTAGG-TAAAATTACCAAAA
* ** * *
57896690 TACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCCTAGTAGGTAAAATTACCAAAA
57896744 TACCCTCAATTTGTAAAATTACCAAAATACCCCT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCT
57896778 GATTTACAAA
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 8 0.11
54 61 0.84
55 3 0.04
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTAGGTAAAATTACCAAAA
Found at i:57896792 original size:27 final size:27
Alignment explanation
Indices: 57896679--57896777 Score: 155
Period size: 27 Copynumber: 3.7 Consensus size: 27
57896669 TATAGGATAG
57896679 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
57896706 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
57896733 AATTATCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
57896760 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
57896778 GATTTACAAA
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
26 4 0.06
27 57 0.88
28 4 0.06
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:57896864 original size:27 final size:27
Alignment explanation
Indices: 57896758--57896865 Score: 85
Period size: 27 Copynumber: 3.9 Consensus size: 27
57896748 CTCAATTTGT
** * *
57896758 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* * *
57896785 AAAATTACAGAAATATCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
* *
57896812 TAAAAATTA-TAGAAATACCATCGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
57896841 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
57896866 GTAGATTTAC
Statistics
Matches: 63, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
27 39 0.62
28 7 0.11
29 17 0.27
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:57896949 original size:27 final size:27
Alignment explanation
Indices: 57896919--57896979 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
57896909 ACCCCTAATA
57896919 GGTAAAAAGACCGTAA-AGCCCCTGTAG
1 GGTAAAAAGACCGTAATA-CCCCTGTAG
** * *
57896946 GGTAAAGTGACCGTAATACCCTTGTAT
1 GGTAAAAAGACCGTAATACCCCTGTAG
57896973 GGTAAAA
1 GGTAAAA
57896980 TGATGAATAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (27 bp):
GGTAAAAAGACCGTAATACCCCTGTAG
Found at i:57897717 original size:20 final size:20
Alignment explanation
Indices: 57897692--57897757 Score: 89
Period size: 20 Copynumber: 3.3 Consensus size: 20
57897682 ATATGATATG
*
57897692 CATGAT-TGATATGATATGCA
1 CATGATATG-TATGAAATGCA
*
57897712 CATGATATGTATAAAATGCA
1 CATGATATGTATGAAATGCA
*
57897732 CATGATATGTATGAAATGAA
1 CATGATATGTATGAAATGCA
57897752 CATGAT
1 CATGAT
57897758 GTATTCATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
20 39 0.95
21 2 0.05
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (20 bp):
CATGATATGTATGAAATGCA
Found at i:57897885 original size:52 final size:51
Alignment explanation
Indices: 57897807--57897929 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
57897797 GAGGAAGTGC
*
57897807 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCTCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
57897859 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
*
57897910 AAAAAGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
57897930 ATTAAAGGAG
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
50 10 0.14
51 23 0.33
52 36 0.52
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:57897904 original size:25 final size:26
Alignment explanation
Indices: 57897807--57897929 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
57897797 GAGGAAGTGC
**
57897807 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
57897833 AAAAGGGCTTATGCTCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
57897859 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
57897885 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
57897910 AAAAAGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
57897930 ATTAAAGGAG
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 32 0.36
26 56 0.64
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:57898155 original size:42 final size:42
Alignment explanation
Indices: 57898075--57898166 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
57898065 TAGTCTCCCC
* ** *
57898075 AAATGGGCTAGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTAGCATACATCCATTGACATTACATATGATATTG
* * *
57898117 AAATTGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTAGCATACATCCATTGACATTACATATGATATTG
57898159 AAATGGGC
1 AAATGGGC
57898167 CTATGGTCCA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.35
Consensus pattern (42 bp):
AAATGGGCTAGCATACATCCATTGACATTACATATGATATTG
Found at i:57898242 original size:31 final size:31
Alignment explanation
Indices: 57898190--57898325 Score: 220
Period size: 31 Copynumber: 4.4 Consensus size: 31
57898180 CGTTTACAGT
*
57898190 AAAGGCTTTGG-CCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
57898220 AAAGGCTTCGGCCCCGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
57898251 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
57898282 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
57898313 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
57898326 TAGTAACCGT
Statistics
Matches: 100, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 10 0.10
31 90 0.90
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:57909713 original size:10 final size:8
Alignment explanation
Indices: 57909683--57909721 Score: 51
Period size: 8 Copynumber: 4.5 Consensus size: 8
57909673 AATTTAGAAA
57909683 AATAAAAT
1 AATAAAAT
57909691 AATAAAAT
1 AATAAAAT
57909699 AATAAAAGCT
1 AATAAAA--T
57909709 AATAAATAT
1 AATAAA-AT
57909718 AATA
1 AATA
57909722 TTAGACTCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 15 0.54
9 5 0.18
10 7 0.25
11 1 0.04
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (8 bp):
AATAAAAT
Found at i:57917652 original size:5 final size:5
Alignment explanation
Indices: 57917642--57917669 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
57917632 AAAGCATTAA
57917642 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
57917670 TAACAAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:57918764 original size:13 final size:13
Alignment explanation
Indices: 57918746--57918770 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57918736 AATCACAAAT
57918746 AAATACACATATC
1 AAATACACATATC
57918759 AAATACACATAT
1 AAATACACATAT
57918771 TTTTTTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATACACATATC
Found at i:57927042 original size:28 final size:28
Alignment explanation
Indices: 57926996--57927064 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
57926986 TTTAAAACCC
*
57926996 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
57927023 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
57927051 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
57927065 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:57928714 original size:20 final size:20
Alignment explanation
Indices: 57928691--57928728 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
57928681 CACATCCAAA
*
57928691 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
57928711 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
57928729 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:57935023 original size:28 final size:27
Alignment explanation
Indices: 57934976--57935044 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 27
57934966 TTTTAAACCC
*
57934976 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTATTTCGGTAATTTTGCTCTT
57935003 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGT-ATTTCGGTAATTTTGCTCTT
57935031 TAGGGGTTATTTCG
1 TAGGGG-TATTTCG
57935045 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 7 0.18
28 31 0.79
29 1 0.03
ACGTcount: A:0.17, C:0.10, G:0.28, T:0.45
Consensus pattern (27 bp):
TAGGGGTATTTCGGTAATTTTGCTCTT
Found at i:57936697 original size:20 final size:20
Alignment explanation
Indices: 57936674--57936711 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
57936664 CACATCCAAA
*
57936674 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
57936694 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
57936712 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:57937714 original size:13 final size:13
Alignment explanation
Indices: 57937696--57937720 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57937686 AATCACAAAT
57937696 AAATACACATATC
1 AAATACACATATC
57937709 AAATACACATAT
1 AAATACACATAT
57937721 TTTTTTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATACACATATC
Found at i:57939975 original size:28 final size:28
Alignment explanation
Indices: 57939943--57940007 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
57939933 ATTTACTAGA
* *
57939943 ATACCCCTATGTATGGAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
57939971 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
57939999 ATACCCCTA
1 ATACCCCTA
57940008 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.34, C:0.28, G:0.09, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:57940154 original size:28 final size:27
Alignment explanation
Indices: 57940113--57940202 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
57940103 AGGAAGCGTC
*
57940113 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
57940141 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
57940168 CGGGTGGCACTGCCACAACATATCTGTAT
1 CTGGTGGCACTGCCACAA-ATATCTGT-T
57940197 CTGGTG
1 CTGGTG
57940203 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.46
29 6 0.12
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:57940173 original size:27 final size:27
Alignment explanation
Indices: 57940115--57940194 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
57940105 GAAGCGTCCT
* *
57940115 GGTGGCTA-TGCCACAAATTATCTATTCT
1 GGTGGC-ACTGCCACAAA-TATCTGTTCG
* *
57940143 GGTGGCCCTGCCACATATATCTGTTCG
1 GGTGGCACTGCCACAAATATCTGTTCG
57940170 GGTGGCACTGCCACAACATATCTGT
1 GGTGGCACTGCCACAA-ATATCTGT
57940195 ATCTGGTGAC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
27 22 0.50
28 22 0.50
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (27 bp):
GGTGGCACTGCCACAAATATCTGTTCG
Found at i:57940213 original size:29 final size:28
Alignment explanation
Indices: 57940123--57940213 Score: 69
Period size: 27 Copynumber: 3.2 Consensus size: 28
57940113 CTGGTGGCTA
* * * *
57940123 TGCCACAA-ATTATCTATTCTGGTGGCCC
1 TGCCACAACA-TATCTGTTCGGGTGACAC
* *
57940151 TGCCAC-ATATATCTGTTCGGGTGGCAC
1 TGCCACAACATATCTGTTCGGGTGACAC
* *
57940178 TGCCACAACATATCTGTATCTGGTGACTC
1 TGCCACAACATATCTGT-TCGGGTGACAC
*
57940207 TGTCACA
1 TGCCACA
57940214 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.42
28 16 0.31
29 14 0.27
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (28 bp):
TGCCACAACATATCTGTTCGGGTGACAC
Found at i:57943268 original size:46 final size:46
Alignment explanation
Indices: 57943215--57943389 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
57943205 TATTTGGGCA
57943215 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
57943261 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
57943308 TCCGAACTCGTTGAGTTGAGTCCGA-TTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
57943353 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57943390 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 4 0.04
45 26 0.24
46 47 0.43
47 29 0.26
49 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:57943370 original size:92 final size:93
Alignment explanation
Indices: 57943211--57943381 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
57943201 GGGATATTTG
* *
57943211 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57943276 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
57943304 GGCATCCGAACTCGTTGAGTTGAGTCCGA-TTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57943368 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
57943382 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 46 0.61
93 29 0.39
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:57953205 original size:40 final size:40
Alignment explanation
Indices: 57953161--57953270 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
57953151 TTCACAATTT
* *
57953161 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
57953201 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
57953241 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
57953271 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:57954604 original size:40 final size:40
Alignment explanation
Indices: 57954413--57954597 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
57954403 TCGAATGATG
* * *
57954413 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
57954453 TCCGGACTAAGAT-CAGAAGGCATTCGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
57954493 TCCAGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57954532 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57954573 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57954598 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 35 0.28
40 80 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57954619 original size:79 final size:79
Alignment explanation
Indices: 57954468--57954630 Score: 188
Period size: 79 Copynumber: 2.1 Consensus size: 79
57954458 ACTAAGATCA
* **
57954468 GAAGGCATTCGTGCGAGTTACTAATTCCAGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAAAT
1 GAAGGCATTCGTGCGAGTTACTAATACCAGGCTAAGTCCGAAGGCATTGGAACGAGTTACTAAAT
*
57954533 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* * * *
57954547 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTCGTGCGAGTTACTAAT-ACCAGGCTAAGT-CCGAAGGCATTGGAACGAGTTA-CTA
* *
57954610 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
57954626 GAAGG
1 GAAGG
57954631 TATGTGATTC
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.65
80 23 0.32
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
GAAGGCATTCGTGCGAGTTACTAATACCAGGCTAAGTCCGAAGGCATTGGAACGAGTTACTAAAT
CCGGGTTAAATCCC
Found at i:57956315 original size:28 final size:28
Alignment explanation
Indices: 57956283--57956347 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
57956273 ATTTACTAGA
*
57956283 ATACCCCTATGTATACAAAATTACCAT-T
1 ATACCCCTATGTATACAAAATGACC-TCT
*
57956311 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATACAAAATGACCTCT
57956339 ATACCCCTA
1 ATACCCCTA
57956348 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATACAAAATGACCTCT
Found at i:57956511 original size:27 final size:28
Alignment explanation
Indices: 57956453--57956542 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
57956443 AGGAAGCGTC
*
57956453 CTGGTGGCAATGCCACAA-ATTATCTGTT
1 CTGGTGGCACTGCCACAACA-TATCTGTT
* * *
57956481 CTGGTGGCCCTGGCAC-ATATATCTGTT
1 CTGGTGGCACTGCCACAACATATCTGTT
57956508 CTGGTGGCACTGCCACAACATATCTGTAT
1 CTGGTGGCACTGCCACAACATATCTGT-T
57956537 CTGGTG
1 CTGGTG
57956543 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAACATATCTGTT
Found at i:57956561 original size:55 final size:56
Alignment explanation
Indices: 57956453--57956567 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
57956443 AGGAAGCGTC
*
57956453 CTGGTGGCAATGCCACAAATTATCTGTTCTGGTGGCCCTGGCACATATATCTGT-T
1 CTGGTGGCAATGCCACAAATTATCTGTTCTGGTGACCCTGGCACATATATCTGTAT
* * * *
57956508 CTGGTGGCACTGCCACAACA-TATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCAATGCCACAA-ATTATCTGT-TCTGGTGACCCTGGCACATATATCTGTAT
57956564 CTGG
1 CTGG
57956568 CAGCTATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
55 30 0.58
56 22 0.42
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (56 bp):
CTGGTGGCAATGCCACAAATTATCTGTTCTGGTGACCCTGGCACATATATCTGTAT
Found at i:57960842 original size:49 final size:49
Alignment explanation
Indices: 57960789--57960960 Score: 220
Period size: 49 Copynumber: 3.5 Consensus size: 49
57960779 GTCGATGTCG
57960789 TGTCCCAGACAGATCTTACACTGACTTCCATATATCGAGGCCGATGCCA
1 TGTCCCAGACAGATCTTACACTGACTTCCATATATCGAGGCCGATGCCA
*
57960838 TGTCCCAGACAGATCTTACACTGACTTTCATATATCGAGGCCGATGCCA
1 TGTCCCAGACAGATCTTACACTGACTTCCATATATCGAGGCCGATGCCA
* * * * * * * *
57960887 TGTCCCAGACAGGTCTTAAACTGGCTCCCATCTATTG-GTGTCGGTGCCA
1 TGTCCCAGACAGATCTTACACTGACTTCCATATATCGAG-GCCGATGCCA
* * *
57960936 TGTCCCAGACTGGTCTTACATTGAC
1 TGTCCCAGACAGATCTTACACTGAC
57960961 ACACAACAAG
Statistics
Matches: 108, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
48 1 0.01
49 107 0.99
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
TGTCCCAGACAGATCTTACACTGACTTCCATATATCGAGGCCGATGCCA
Found at i:57968212 original size:47 final size:47
Alignment explanation
Indices: 57968140--57968455 Score: 278
Period size: 47 Copynumber: 6.7 Consensus size: 47
57968130 AGTGTGTAAT
*
57968140 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCCATCTAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CATCTAG
* * *
57968188 G-TGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC---ATCTAG
* * * *
57968236 GCTGATGCCATGTCCCAGACATGGTCTTACAATGACACATC-TCGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATC-TAG
*
57968282 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATC-TCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCATCTAG
** *
57968328 GCCGATG-CATGTCTTAGACATGGTCTTACACTGGCTC-TCACATCTCTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT--CATCT-AG
* * *
57968376 TGCCGATGCCATGTCCCAGACATGGTCTTGCACTGGCTC-TCATAATGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CT-AG
* *
57968425 GCTGATG-CATATCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
57968456 AGCACACAAA
Statistics
Matches: 227, Mismatches: 24, Indels: 36
0.79 0.08 0.13
Matches are distributed among these distances:
44 12 0.05
45 17 0.07
46 46 0.20
47 61 0.27
48 17 0.07
49 43 0.19
50 31 0.14
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTAG
Found at i:57968402 original size:141 final size:142
Alignment explanation
Indices: 57968140--57968404 Score: 344
Period size: 140 Copynumber: 1.9 Consensus size: 142
57968130 AGTGTGTAAT
* * *
57968140 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCCATCTAGGTGATGCCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCGAGGCGATGCCATGTCCCAG
* *
57968205 ACATGGTCTTACACTGACTATCGAAATCGAGGCTGATGCCATGTCCCAGACATGGTCTTACAATG
66 ACATGGTCTTACACTGACTATCGAAATCCAGGCCGATGCCATGTCCCAGACATGGTCTTACAATG
57968270 ACACATCTCGTA
131 ACACATCTCGTA
*
57968282 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-C-TCGAGGCCGATG-CATGTCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCCATCGAGG-CGATGCCATGTCC
* * * * *
57968342 TAGACATGGTCTTACACTGGCTCTC-ACATCTCTGTGCCGATGCCATGTCCCAGACATGGTCTT
63 CAGACATGGTCTTACACTGACTATCGAAATC-CAG-GCCGATGCCATGTCCCAGACATGGTCTT
57968405 GCACTGGCTC
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
139 4 0.04
140 47 0.44
141 46 0.43
142 10 0.09
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (142 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCGAGGCGATGCCATGTCCCAG
ACATGGTCTTACACTGACTATCGAAATCCAGGCCGATGCCATGTCCCAGACATGGTCTTACAATG
ACACATCTCGTA
Found at i:57971701 original size:48 final size:46
Alignment explanation
Indices: 57971646--57971806 Score: 139
Period size: 46 Copynumber: 3.5 Consensus size: 46
57971636 AGCTAACACA
* * * * *
57971646 ATGTCCCAGACAGGTCTTACATTAGCTTGTATATCCCAAGGTCGATGC
1 ATGTCCCAGACATGTCTTACACTAGC-TCT-TATCCCAAGGCCAATGC
* * * *
57971694 ATGTCCCAAACATGTCTTACACTAGCTCTTGTCTCAATGCCAATGC
1 ATGTCCCAGACATGTCTTACACTAGCTCTTATCCCAAGGCCAATGC
** *
57971740 ATGTCCCAGACATGTCTTACACT-G-TCTT-TCATAATATGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTCTTATC-CCA-A-GGCCAATGC
*
57971786 ATGTCCCAGACAAGTCTTACA
1 ATGTCCCAGACATGTCTTACA
57971807 GTGGCTCACA
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
43 2 0.02
44 6 0.06
45 2 0.02
46 61 0.64
47 2 0.02
48 23 0.24
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (46 bp):
ATGTCCCAGACATGTCTTACACTAGCTCTTATCCCAAGGCCAATGC
Found at i:57971753 original size:46 final size:46
Alignment explanation
Indices: 57971690--57971806 Score: 150
Period size: 46 Copynumber: 2.5 Consensus size: 46
57971680 CCCAAGGTCG
* *
57971690 ATGCATGTCCCAAACATGTCTTACACTAGCTCTTGTC-TCA-AT-GCCA
1 ATGCATGTCCCAGACATGTCTTACACT-G-TCTT-TCATAATATGGCCA
*
57971736 ATGCATGTCCCAGACATGTCTTACACTGTCTTTCATAATATGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGTCTTTCATAATATGGCCA
*
57971782 ATGCATGTCCCAGACAAGTCTTACA
1 ATGCATGTCCCAGACATGTCTTACA
57971807 GTGGCTCACA
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
43 2 0.03
44 6 0.09
45 3 0.05
46 53 0.83
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.30
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGTCTTTCATAATATGGCCA
Found at i:57972967 original size:40 final size:40
Alignment explanation
Indices: 57972801--57972968 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
57972791 CATTTGAATG
* * *
57972801 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * *
57972841 ATGTCCGGGATAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * * * **
57972881 ATATCCGGGCTAAGACCTGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
57972921 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
57972961 GTATCCGG
1 ATATCCGG
57972969 TTAAATCCCG
Statistics
Matches: 98, Mismatches: 26, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
39 3 0.03
40 91 0.93
41 4 0.04
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:57982623 original size:46 final size:47
Alignment explanation
Indices: 57982452--57982624 Score: 214
Period size: 46 Copynumber: 3.7 Consensus size: 47
57982442 AACCCGCCCC
* *
57982452 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCACATCCA
57982498 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCACATCCA
* * * *
57982546 TCA-CGAATTCGGACTCAACTCAACGAGTTCGGA-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCACATCCA
57982591 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57982625 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 58 0.53
47 30 0.28
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCACATCCA
Found at i:57984651 original size:6 final size:6
Alignment explanation
Indices: 57984640--57984665 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
57984630 ACACTGTACC
57984640 ATGACT ATGACT ATGACT ATGACT AT
1 ATGACT ATGACT ATGACT ATGACT AT
57984666 ATGCACCGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (6 bp):
ATGACT
Found at i:57985126 original size:21 final size:22
Alignment explanation
Indices: 57985100--57985145 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 22
57985090 CATGAAAAAT
57985100 ATAATTATATT-TATAAAT-TTA
1 ATAATTATATTATA-AAATATTA
57985121 ATAATTATATTATAAAATATTA
1 ATAATTATATTATAAAATATTA
57985143 ATA
1 ATA
57985146 TAAAAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAATTATATTATAAAATATTA
Found at i:57985856 original size:15 final size:16
Alignment explanation
Indices: 57985836--57985869 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
57985826 AATAGCTTGA
57985836 TTAATAAAAAATAA-T
1 TTAATAAAAAATAAGT
57985851 TTAATAAAAAATAAGT
1 TTAATAAAAAATAAGT
57985867 TTA
1 TTA
57985870 TTTTTTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
TTAATAAAAAATAAGT
Found at i:57989236 original size:29 final size:27
Alignment explanation
Indices: 57989203--57989294 Score: 78
Period size: 29 Copynumber: 3.2 Consensus size: 27
57989193 TTTAAAAATA
57989203 ATTATATTAAGAATGTTATTAAATTATAT
1 ATTATATTAA-AAT-TTATTAAATTATAT
* * *
57989232 ATTATTTTATTAAATTATATTTAATAATA-
1 ATTATATTA--AAATT-TATTAAATTATAT
*
57989261 ATTATGTTAAAATATTATTAAATTATAT
1 ATTATATTAAAAT-TTATTAAATTATAT
57989289 AATTAT
1 -ATTAT
57989295 TTTTATTAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
27 14 0.27
28 1 0.02
29 22 0.43
30 13 0.25
31 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (27 bp):
ATTATATTAAAATTTATTAAATTATAT
Found at i:57989330 original size:59 final size:58
Alignment explanation
Indices: 57989175--57989332 Score: 221
Period size: 59 Copynumber: 2.7 Consensus size: 58
57989165 ACATATTATG
* * *
57989175 ATTTTTATTAATTTATATTTTAAAAATAATTATATTAAGAATGTTATTAAATTATATATT
1 ATTTTTATTAAATTATA-TTTAATAATAATTATATTAA-AATATTATTAAATTATATATT
*
57989235 A-TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATTATTAAATTATATAATT
1 ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATTATTAAATTATAT-ATT
*
57989293 ATTTTTATTAAATTATATTTAGTAATAATCT-TATTAAAAT
1 ATTTTTATTAAATTATATTTAATAATAAT-TATATTAAAAT
57989333 TTAATAATAA
Statistics
Matches: 89, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
57 17 0.19
58 22 0.25
59 48 0.54
60 2 0.02
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.53
Consensus pattern (58 bp):
ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATTATTAAATTATATATT
Found at i:57989473 original size:44 final size:46
Alignment explanation
Indices: 57989422--57989517 Score: 126
Period size: 44 Copynumber: 2.1 Consensus size: 46
57989412 TATTACAACA
57989422 TCCATTCCATTCAACCAAACACA-AGAA-TACTA-TTACAGCATTAT
1 TCCATTCCATTCAACCAAACA-ATAGAATTACTAGTTACAGCATTAT
* * * *
57989466 TCCATTCCATTTAACCTAACAATTGAATTACTAGTTACAGCTTTAT
1 TCCATTCCATTCAACCAAACAATAGAATTACTAGTTACAGCATTAT
57989512 TCCATT
1 TCCATT
57989518 ACAGCTATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 22 0.49
45 5 0.11
46 17 0.38
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.34
Consensus pattern (46 bp):
TCCATTCCATTCAACCAAACAATAGAATTACTAGTTACAGCATTAT
Found at i:57989521 original size:16 final size:16
Alignment explanation
Indices: 57989500--57989565 Score: 96
Period size: 16 Copynumber: 4.1 Consensus size: 16
57989490 GAATTACTAG
57989500 TTACAGCTTTATTCCA
1 TTACAGCTTTATTCCA
*
57989516 TTACAGCTATATTCCA
1 TTACAGCTTTATTCCA
*
57989532 TTACATCTTTATTCCA
1 TTACAGCTTTATTCCA
**
57989548 TTACAGCCCTATTCCA
1 TTACAGCTTTATTCCA
57989564 TT
1 TT
57989566 CACCCCAACC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.26, C:0.27, G:0.05, T:0.42
Consensus pattern (16 bp):
TTACAGCTTTATTCCA
Found at i:57993635 original size:89 final size:89
Alignment explanation
Indices: 57993484--57993661 Score: 311
Period size: 89 Copynumber: 2.0 Consensus size: 89
57993474 CCACACTATG
*
57993484 TAAGTCCCTCAAGCTTCTCCTCACCATACCATTCTATCCACTTCTTCCTCAATAGGGAGAGGAAT
1 TAAGTCCCTCAAGCTTCTCCTCACCATACCATTCTATCCACTTCTTCCTCAAAAGGGAGAGGAAT
57993549 GCATAGAATCCTCTTGTCATCATC
66 GCATAGAATCCTCTTGTCATCATC
* * *
57993573 TAAGTCCCTGAAGCTTTTCCTCACTATACCATTCTATCCACTTCTTCCTCAAAAGGGAGAGGAAT
1 TAAGTCCCTCAAGCTTCTCCTCACCATACCATTCTATCCACTTCTTCCTCAAAAGGGAGAGGAAT
*
57993638 GCATAGGATCCTCTTGTCATCATC
66 GCATAGAATCCTCTTGTCATCATC
57993662 CGGGTGAAAA
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 84 1.00
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (89 bp):
TAAGTCCCTCAAGCTTCTCCTCACCATACCATTCTATCCACTTCTTCCTCAAAAGGGAGAGGAAT
GCATAGAATCCTCTTGTCATCATC
Found at i:57998456 original size:25 final size:25
Alignment explanation
Indices: 57998391--57998449 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
57998381 AGATATAAAT
*** *
57998391 GGTAAGCTCATACAAGCTGAATATC
1 GGTAAGCTCATGTGAGCTAAATATC
*
57998416 GGTAAGCTCATGTGAGCTAAATATT
1 GGTAAGCTCATGTGAGCTAAATATC
57998441 GGTAAGCTC
1 GGTAAGCTC
57998450 TCTTGAGATG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (25 bp):
GGTAAGCTCATGTGAGCTAAATATC
Found at i:57999293 original size:44 final size:45
Alignment explanation
Indices: 57999230--57999319 Score: 164
Period size: 44 Copynumber: 2.0 Consensus size: 45
57999220 AATCAGTTGA
57999230 AGAAAGAAGAAAAGATGATACTCGGCTTTTATTT-AATTAATTTT
1 AGAAAGAAGAAAAGATGATACTCGGCTTTTATTTCAATTAATTTT
*
57999274 AGAAAGAAGAAAAGATGATACTTGGCTTTTATTTCAATTAATTTT
1 AGAAAGAAGAAAAGATGATACTCGGCTTTTATTTCAATTAATTTT
57999319 A
1 A
57999320 ATTTTAACTT
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 33 0.75
45 11 0.25
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.37
Consensus pattern (45 bp):
AGAAAGAAGAAAAGATGATACTCGGCTTTTATTTCAATTAATTTT
Found at i:58002039 original size:48 final size:48
Alignment explanation
Indices: 58001974--58002122 Score: 280
Period size: 48 Copynumber: 3.1 Consensus size: 48
58001964 GCTGAAATTG
*
58001974 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
58002022 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
58002070 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
58002118 ATGTA
1 ATGTA
58002123 GGCGATGTGC
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 99 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:58002321 original size:37 final size:37
Alignment explanation
Indices: 58002269--58002376 Score: 189
Period size: 37 Copynumber: 2.9 Consensus size: 37
58002259 GGAAATATAT
58002269 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
58002306 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
58002343 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
58002377 TCGTCTGAGC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:58006985 original size:29 final size:29
Alignment explanation
Indices: 58006953--58007030 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
58006943 ATACCCTCCG
** *
58006953 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
58006982 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
58007011 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
58007031 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:58014798 original size:29 final size:29
Alignment explanation
Indices: 58014766--58014843 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
58014756 ATACCCTCCG
** *
58014766 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
58014795 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
58014824 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
58014844 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:58025800 original size:27 final size:30
Alignment explanation
Indices: 58025753--58025823 Score: 105
Period size: 29 Copynumber: 2.5 Consensus size: 30
58025743 AAAATTGTAC
*
58025753 AGCA-TAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAGTTTGAATACATAT
58025780 AGCACTAAGTGTGCGAG-TTGAATACATAT
1 AGCACTAAGTGTGCGAGTTTGAATACATAT
58025809 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
58025824 GATTCACTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 7 0.17
28 14 0.35
29 19 0.47
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.30
Consensus pattern (30 bp):
AGCACTAAGTGTGCGAGTTTGAATACATAT
Found at i:58033556 original size:28 final size:28
Alignment explanation
Indices: 58033487--58033587 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
58033477 GACAAGATTG
* * * *
58033487 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
58033517 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
58033545 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
58033574 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
58033588 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:58035224 original size:39 final size:39
Alignment explanation
Indices: 58035149--58035292 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
58035139 CCACACAAAG
*
58035149 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
58035189 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
*
58035228 GCCTTCGGGCTTAGCCCGGGTATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
*
58035267 GCCTTCGGGCTTAGCCCGAATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
58035293 TCGAACATTC
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 85 0.90
40 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:58042444 original size:38 final size:39
Alignment explanation
Indices: 58042331--58042473 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
58042321 CCGCACAAAG
*
58042331 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
58042371 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
58042410 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
58042448 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
58042474 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:58042452 original size:77 final size:79
Alignment explanation
Indices: 58042291--58042472 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
58042281 TCGTTCAAAC
* * **
58042291 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
58042356 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
58042371 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
58042434 CAATTTGCACAATT
66 CAATTTGCACAATT
58042448 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
58042473 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:58046980 original size:51 final size:51
Alignment explanation
Indices: 58046881--58047013 Score: 142
Period size: 51 Copynumber: 2.6 Consensus size: 51
58046871 CCATCAAATC
* * *
58046881 TCTAAGAATATAATATCATATCTTCTAAGATTACATATCTTAGATAAGATA
1 TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
* ** * * ** *
58046932 TGTAATCTTATAAAATAATATCTTATAAGATT-CTATATCATATCTAAGATC
1 TCTAAGATTATAATATCATATCTTATAAGATTAC-ATATCATAGATAAGATA
*
58046983 TCTAAGATTATAATATCATATCTTTTAAGAT
1 TCTAAGATTATAATATCATATCTTATAAGAT
58047014 CATGTTTCCA
Statistics
Matches: 64, Mismatches: 17, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
50 1 0.02
51 63 0.98
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (51 bp):
TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
Found at i:58048109 original size:96 final size:96
Alignment explanation
Indices: 58047919--58048112 Score: 280
Period size: 96 Copynumber: 2.0 Consensus size: 96
58047909 TCGCTTCTTT
* *
58047919 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
1 TTGCTCCTCTTAGCCCTCTTGGCTTCGCCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
* * ** * * *
58047984 GTCTGCTCCATCGTTTTCTTTGATGACAGAC
66 ATCTGCTCCATCATTCCCATCGATAACAGAC
* *
58048015 TTGCTCCTCTTTGCCCTCTTGGCTTCGCCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
1 TTGCTCCTCTTAGCCCTCTTGGCTTCGCCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
*
58048080 ATCTGCTCGATCATTCCCATCGATAACAGAC
66 ATCTGCTCCATCATTCCCATCGATAACAGAC
58048111 TT
1 TT
58048113 CCTCAGACAC
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 86 1.00
ACGTcount: A:0.12, C:0.34, G:0.18, T:0.37
Consensus pattern (96 bp):
TTGCTCCTCTTAGCCCTCTTGGCTTCGCCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
ATCTGCTCCATCATTCCCATCGATAACAGAC
Found at i:58060151 original size:40 final size:40
Alignment explanation
Indices: 58060094--58060245 Score: 193
Period size: 40 Copynumber: 3.8 Consensus size: 40
58060084 TCGAATGATG
* ** *
58060094 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTGAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTCCCAAA
58060134 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTCCCAAA
*
58060174 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTCCCAAA
**
58060214 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAG
58060246 CTATTATAAC
Statistics
Matches: 101, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 92 0.91
41 8 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTCCCAAA
Found at i:58060259 original size:40 final size:40
Alignment explanation
Indices: 58060094--58060285 Score: 178
Period size: 40 Copynumber: 4.8 Consensus size: 40
58060084 TCGAATGATG
*
58060094 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTGAG-TGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACCAAA
* * *
58060134 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAA
* * * *
58060174 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAA
* **
58060214 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCA-AA
* * *
58060255 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
58060286 TCGCTATATC
Statistics
Matches: 132, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 1 0.01
40 120 0.91
41 11 0.08
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAA
Found at i:58060271 original size:80 final size:79
Alignment explanation
Indices: 58060094--58060312 Score: 205
Period size: 80 Copynumber: 2.7 Consensus size: 79
58060084 TCGAATGATG
*
58060094 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTGAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGC-GAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* *
58060159 GTGCGAGTTCCCAAA
65 GTGCGAGCTACCAAA
* * ** **
58060174 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCGAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
**
58060237 TTGTGCGAGCTATTATAA
63 TTGTGCGAGCTACCA-AA
* * * *
58060255 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGTCG-CTATATCCGGA-TAAGATCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGT-GACCAAATCCGGACTAAGATCCGAAGG
58060313 TACGTGATTC
Statistics
Matches: 112, Mismatches: 20, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
79 13 0.12
80 89 0.79
81 10 0.09
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGCTACCAAA
Found at i:58066556 original size:6 final size:6
Alignment explanation
Indices: 58066526--58066644 Score: 57
Period size: 6 Copynumber: 19.3 Consensus size: 6
58066516 AAGAAACATT
* * * *
58066526 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATTAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
58066575 ATCAGA ATCAGA ATTAG- GTGACAGA ATTAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* *
58066626 A-CAGA ATCAAA ACCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
58066645 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 20, Indels: 22
0.66 0.16 0.18
Matches are distributed among these distances:
5 5 0.06
6 65 0.79
7 9 0.11
8 3 0.04
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:58066580 original size:25 final size:25
Alignment explanation
Indices: 58066547--58066616 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
58066537 AATCAAAATG
*
58066547 AGAATCAGAATTAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
58066572 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
58066597 AGAATTAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAG
58066617 TATCAGGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.46, C:0.11, G:0.23, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:58066585 original size:31 final size:30
Alignment explanation
Indices: 58066547--58066644 Score: 98
Period size: 31 Copynumber: 3.4 Consensus size: 30
58066537 AATCAAAATG
58066547 AGAATCAGAATTAGAATCAGGTGACAGAATC
1 AGAATCAGAATTAG-ATCAGGTGACAGAATC
*
58066578 AGAATCAGAA-T---T-AGGTGACAGAATT
1 AGAATCAGAATTAGATCAGGTGACAGAATC
* *
58066603 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATTAG-ATCAGGTGACAGAATC
* *
58066634 AAAACCAGAAT
1 AGAATCAGAAT
58066645 GTGAATGCAA
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
25 22 0.40
26 1 0.02
30 2 0.04
31 30 0.55
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.19
Consensus pattern (30 bp):
AGAATCAGAATTAGATCAGGTGACAGAATC
Found at i:58066936 original size:27 final size:27
Alignment explanation
Indices: 58066735--58066925 Score: 283
Period size: 27 Copynumber: 7.1 Consensus size: 27
58066725 CCAACCGCTA
* *
58066735 TAAAATGGTAATTTTATAAATCGAGGG
1 TAAAATGGTAATTCTGTAAATCGAGGG
* *
58066762 TAAAACGGTAATTCTATAAATCGAGGG
1 TAAAATGGTAATTCTGTAAATCGAGGG
**
58066789 TAAAATAATAATTCTGTAAATCGAGGG
1 TAAAATGGTAATTCTGTAAATCGAGGG
58066816 TAAAATGGTAATTCTGTAAATCGAGGG
1 TAAAATGGTAATTCTGTAAATCGAGGG
* *
58066843 TAAAATAGTAATTTTGTAAATCGAGGG
1 TAAAATGGTAATTCTGTAAATCGAGGG
* *
58066870 TAAAATGGTAATTCTGTAAATCAAAGG
1 TAAAATGGTAATTCTGTAAATCGAGGG
*
58066897 TAAAATGGTAATTCTGTAAATCAAGGG
1 TAAAATGGTAATTCTGTAAATCGAGGG
58066924 TA
1 TA
58066926 TTTCAGTAAT
Statistics
Matches: 149, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 149 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
TAAAATGGTAATTCTGTAAATCGAGGG
Found at i:58068924 original size:40 final size:41
Alignment explanation
Indices: 58068863--58069083 Score: 339
Period size: 40 Copynumber: 5.6 Consensus size: 41
58068853 AACCCAAGTA
* *
58068863 CCTTCGGG-TTTAG-CCGGATATAG-CAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* *
58068901 CCTTCGGGTCTTAGCCCGGATATAGTCAA-TAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
58068941 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
*
58068981 CCTTTGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
*
58069021 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
58069061 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
58069084 CATTCGAATA
Statistics
Matches: 169, Mismatches: 8, Indels: 10
0.90 0.04 0.05
Matches are distributed among these distances:
38 8 0.05
39 6 0.04
40 151 0.89
41 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
Found at i:58072530 original size:40 final size:39
Alignment explanation
Indices: 58072485--58072614 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
58072475 CGGAATATAA
58072485 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
58072525 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
58072565 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
58072605 CCGGATATAA
1 CCGGATATAA
58072615 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:58072629 original size:40 final size:40
Alignment explanation
Indices: 58072501--58072652 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
58072491 ATAACCATGT
* * *
58072501 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
58072541 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
58072581 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
58072621 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
58072653 CATTCAATTT
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 87 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:58072635 original size:80 final size:80
Alignment explanation
Indices: 58072501--58072650 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
58072491 ATAACCATGT
* *
58072501 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
58072566 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
58072581 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
58072644 CCCGGAT
64 CCCGGAT
58072651 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:58079492 original size:28 final size:28
Alignment explanation
Indices: 58079452--58079521 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
58079442 ATAATAAGTC
58079452 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
* *
58079480 CGCACACTTAGTGCTATACAATTAAATT
1 CGCACACTTAGTGCTATACAATCAAACT
58079508 CGCACACTTAGTGC
1 CGCACACTTAGTGC
58079522 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
28 34 0.89
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:58080082 original size:2 final size:2
Alignment explanation
Indices: 58080075--58080103 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
58080065 GGCATACATT
58080075 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
58080104 GGCCGAATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:58084922 original size:20 final size:20
Alignment explanation
Indices: 58084899--58084970 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
58084889 GGCACCGAAT
*
58084899 TGCAGACAGGGGCACAAATG
1 TGCAAACAGGGGCACAAATG
* *
58084919 TGCAAACAAGGGCACTGAA-G
1 TGCAAACAGGGGCAC-AAATG
**
58084939 TGCAGGCAGGGGCACAAATG
1 TGCAAACAGGGGCACAAATG
58084959 TGCAAACAGGGG
1 TGCAAACAGGGG
58084971 AAACGTAGTG
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
19 2 0.05
20 37 0.90
21 2 0.05
ACGTcount: A:0.35, C:0.19, G:0.36, T:0.10
Consensus pattern (20 bp):
TGCAAACAGGGGCACAAATG
Found at i:58084949 original size:40 final size:40
Alignment explanation
Indices: 58084889--58084966 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
58084879 GCATAATAGC
*
58084889 GGCACCGAATTGCAGACAGGGGCACAAATGTGCAAACAAG
1 GGCACCGAAGTGCAGACAGGGGCACAAATGTGCAAACAAG
* *
58084929 GGCACTGAAGTGCAGGCAGGGGCACAAATGTGCAAACA
1 GGCACCGAAGTGCAGACAGGGGCACAAATGTGCAAACA
58084967 GGGGAAACGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.36, C:0.22, G:0.32, T:0.10
Consensus pattern (40 bp):
GGCACCGAAGTGCAGACAGGGGCACAAATGTGCAAACAAG
Found at i:58099112 original size:30 final size:30
Alignment explanation
Indices: 58099072--58099133 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
58099062 CCTTTTCATA
* * *
58099072 TTTCATATTTCATAACATTGGGCGAAGCCT
1 TTTCAAATTTCATAACACTGGACGAAGCCT
**
58099102 TTTCAAATTTCATATTACTGGACGAAGCCT
1 TTTCAAATTTCATAACACTGGACGAAGCCT
58099132 TT
1 TT
58099134 ACTGTAAACG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (30 bp):
TTTCAAATTTCATAACACTGGACGAAGCCT
Found at i:58099384 original size:23 final size:23
Alignment explanation
Indices: 58099345--58099465 Score: 147
Period size: 23 Copynumber: 5.2 Consensus size: 23
58099335 GGTCTAGCCT
*
58099345 CTTTTAATAACTGGGGCAAAAGC
1 CTTTTAATAACTGGGGCATAAGC
*
58099368 CTTTTTTATAACT-GGGCATAAGC
1 C-TTTTAATAACTGGGGCATAAGC
* *
58099391 CCTTTGATAACT-GGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
*
58099414 CTTTTGATAACTGGGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGC
*
58099437 CCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
58099461 CTTTT
1 CTTTT
58099466 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
22 18 0.21
23 44 0.51
24 24 0.28
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (23 bp):
CTTTTAATAACTGGGGCATAAGC
Found at i:58099405 original size:46 final size:47
Alignment explanation
Indices: 58099347--58099466 Score: 190
Period size: 46 Copynumber: 2.6 Consensus size: 47
58099337 TCTAGCCTCT
* *
58099347 TTTAATAACTGGGGCAAAAGCCTTTTTTATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCC
* *
58099393 TTTGATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCC
58099439 TTTAATAACTGGGGCATAAGCCCTTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTTT
58099467 CACTTCCTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
45 20 0.30
46 30 0.45
47 16 0.24
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCC
Found at i:58099537 original size:9 final size:9
Alignment explanation
Indices: 58099523--58099579 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
58099513 ATCTCGTGTG
58099523 CATATCATA
1 CATATCATA
*
58099532 CATATCATGTG
1 CATATCA--TA
58099543 CATATCATA
1 CATATCATA
* *
58099552 CATGTCATGTG
1 CATATCA--TA
58099563 CATATCATA
1 CATATCATA
58099572 CATATCAT
1 CATATCAT
58099580 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:58099542 original size:20 final size:20
Alignment explanation
Indices: 58099519--58099581 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
58099509 GAACATCTCG
58099519 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
58099539 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
58099559 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
58099579 TGT
1 TGT
58099582 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:58100871 original size:27 final size:27
Alignment explanation
Indices: 58100809--58100886 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
58100799 GGGCATATTC
58100809 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
58100836 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
58100863 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
58100887 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:58100974 original size:27 final size:26
Alignment explanation
Indices: 58100927--58101010 Score: 82
Period size: 28 Copynumber: 3.1 Consensus size: 26
58100917 GTAAATCTAC
58100927 AAACCAAGGTATTTC-AGTAATTTTGT
1 AAACCAAGGTATTTCTA-TAATTTTGT
58100953 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAA-GGTATTTCTATAATTTTGT
* * *
58100979 AGAAGTCAAGGGTATTTCTGTAACTTTGT
1 A-AA-CCAA-GGTATTTCTATAATTTTGT
58101008 AAA
1 AAA
58101011 TCAGGGGTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
26 9 0.18
27 17 0.35
28 21 0.43
29 2 0.04
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (26 bp):
AAACCAAGGTATTTCTATAATTTTGT
Found at i:58100993 original size:28 final size:27
Alignment explanation
Indices: 58100934--58101022 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
58100924 TACAAACCAA
* * *
58100934 GGTATTTC-AGTAATTTTGTAAACCAAT
1 GGTATTTCTA-TAACTTTGTAAATCAAG
*
58100961 GGTATTTCTATAA-TTTTTAGAAGTCAAG
1 GGTATTTCTATAACTTTGTA-AA-TCAAG
* *
58100989 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCTATAACTTTGTAAATCAAG
58101016 GGTATTT
1 GGTATTT
58101023 TGGTAATTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
26 5 0.10
27 24 0.46
28 18 0.35
29 5 0.10
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.43
Consensus pattern (27 bp):
GGTATTTCTATAACTTTGTAAATCAAG
Found at i:58101074 original size:53 final size:54
Alignment explanation
Indices: 58101016--58101117 Score: 161
Period size: 53 Copynumber: 1.9 Consensus size: 54
58101006 GTAAATCAGG
*
58101016 GGTATTTTGGTAATTTTACAAA-TTGAGGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAACTAGAGGTATTTCGGTAATTTCACAAACCAGT
* * *
58101069 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA
1 GGTATTTTGGTAATTTTACAAACTAGAGGTATTTCGGTAATTTCACAAA
58101118 TTGAGGGTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 22 0.50
54 22 0.50
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACTAGAGGTATTTCGGTAATTTCACAAACCAGT
Found at i:58101125 original size:27 final size:27
Alignment explanation
Indices: 58101015--58101152 Score: 149
Period size: 27 Copynumber: 5.2 Consensus size: 27
58101005 TGTAAATCAG
58101015 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATTGA
* * **
58101042 -GGTATTTCGGTAATTTCACAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATTGA
*
58101067 GTGGTATTTTGGTAATTTTACAAACT-A
1 G-GGTATTTTGGTAATTTTACAAATTGA
58101094 GGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTGGTAATTTTACAAATTGA
* ** *
58101122 GGGTA-TTTCGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATTGA
58101148 GGGTA
1 GGGTA
58101153 AAATAGTAAT
Statistics
Matches: 94, Mismatches: 12, Indels: 11
0.80 0.10 0.09
Matches are distributed among these distances:
25 1 0.01
26 42 0.45
27 49 0.52
28 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATTGA
Found at i:58101162 original size:80 final size:80
Alignment explanation
Indices: 58101013--58101163 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
58101003 TTTGTAAATC
*** *
58101013 AGGGGTATTTTGGTAATTTTACAAATTGAGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTG
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGTATTTCGGTAATTTCACAAACCAGTGGTAAAATA
58101078 GTAATTTTACAAACT
66 GTAATTTTACAAACT
*** *
58101093 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTC-GTAATTTTGTAAATCGAG-GGTAAAA
1 AGGGGTATTTTGGTAATTTTACAAATTGA-GGTATTTCGGTAATTTCACAAA-CCAGTGGTAAAA
58101156 TAGTAATT
64 TAGTAATT
58101164 CTGTAAATCA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 50 0.82
81 11 0.18
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (80 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGTATTTCGGTAATTTCACAAACCAGTGGTAAAATA
GTAATTTTACAAACT
Found at i:58101169 original size:27 final size:27
Alignment explanation
Indices: 58101131--58101389 Score: 282
Period size: 27 Copynumber: 9.8 Consensus size: 27
58101121 AGGGTATTTC
*
58101131 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * *
58101158 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * *
58101185 GTAATTCTATAAATCGACGGT-AAAC-
1 GTAATTTTGTAAATCGAGGGTAAAACA
58101210 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTTTGTAAATCGAGGGTAAAACA
* * * *
58101238 ATAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
58101265 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
58101292 GTAATTTTGTAAATC--GGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
58101317 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
58101344 GTAATTATGTAAAT---GGGTAAAA-T
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
58101367 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTTTGTAAATCGAGGGTA
58101390 CTTTGGTAAT
Statistics
Matches: 200, Mismatches: 23, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.00
24 20 0.10
25 25 0.12
26 20 0.10
27 134 0.67
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAACA
Found at i:58101179 original size:80 final size:81
Alignment explanation
Indices: 58101103--58101349 Score: 306
Period size: 80 Copynumber: 3.1 Consensus size: 81
58101093 AGGGGTATTT
* ** *
58101103 TGGTAATTTTACAAATTGAGGGTATTTC-GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTG
1 TGGTAATTTTACAAATCGAGGGTATAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
58101167 TAAATCAAGGGTAAAA
66 TAAATCAAGGGTAAAA
* * * * *
58101183 TAGTAATTCTATAAATCGACGGTA-AAC-GATAATTTTGTAAATCGAGGGTAAAACAATAATTCT
1 TGGTAATTTTACAAATCGAGGGTATAACAG-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCT
58101246 GTAAATCAAGGGTAAAA
65 GTAAATCAAGGGTAAAA
* * * * *
58101263 CGGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATC--GGGTAAAACGGTAATTTTG
1 TGGTAATTTTACAAATCGAGGGTATAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
*
58101326 TAAATCGAGGGTAAAA
66 TAAATCAAGGGTAAAA
*
58101342 CGGTAATT
1 TGGTAATT
58101350 ATGTAAATGG
Statistics
Matches: 147, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
79 41 0.28
80 88 0.60
81 17 0.12
82 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.32
Consensus pattern (81 bp):
TGGTAATTTTACAAATCGAGGGTATAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
TAAATCAAGGGTAAAA
Found at i:58101416 original size:27 final size:27
Alignment explanation
Indices: 58101395--58101484 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
58101385 GGGTACTTTG
*
58101395 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
58101422 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
58101449 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
58101476 GTAATTTTA
1 GTAATTTTA
58101485 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:58101424 original size:130 final size:131
Alignment explanation
Indices: 58101131--58101443 Score: 315
Period size: 130 Copynumber: 2.4 Consensus size: 131
58101121 AGGGTATTTC
** * * * *
58101131 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTTTGTAAATC-AGGGTAAAACAGTAATTCTATA
*
58101196 AATCGACGGTAAACGATAATTTTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAA
65 AATCGACGGTAAACGATAATTATGTAAAT--AGGGTAAAACAATAATTCTGTAAATCAAGGGTAA
58101261 AACG
128 AACG
* * * * *
58101265 GTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATC-GGGTAAAACGGTAATTTTGTAA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTTTGTAAATCAGGGTAAAACAGTAATTCTATAA
* * ** ** ***
58101329 ATCGAGGGTAAAACGGTAATTATGTAAAT-GGGTAAAATGATAATTCTGTAAATCGGGGGTACTT
66 ATCGACGGT-AAACGATAATTATGTAAATAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAA
*
58101393 TG
130 CG
* *** **
58101395 GTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGTA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTTTGTAAATC-AGGGTA
58101444 TTTCAGTATT
Statistics
Matches: 150, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
130 63 0.42
132 31 0.21
133 17 0.11
134 39 0.26
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.31
Consensus pattern (131 bp):
GTAATTTTACAAATCGAAGGTAAAACAGTAATTTTGTAAATCAGGGTAAAACAGTAATTCTATAA
ATCGACGGTAAACGATAATTATGTAAATAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAAC
G
Found at i:58101443 original size:54 final size:54
Alignment explanation
Indices: 58101378--58101484 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
58101368 ATAATTCTGT
* * *
58101378 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
58101432 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
58101485 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:58101498 original size:27 final size:27
Alignment explanation
Indices: 58101395--58101499 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
58101385 GGGTACTTTG
* *
58101395 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
58101422 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
58101449 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
58101476 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
58101500 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:58102365 original size:9 final size:9
Alignment explanation
Indices: 58102351--58102407 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
58102341 ATCCCGTGTG
58102351 CATATCATA
1 CATATCATA
*
58102360 CATATCATGTG
1 CATATCA--TA
58102371 CATATCATA
1 CATATCATA
* *
58102380 CATGTCATGTG
1 CATATCA--TA
58102391 CATATCATA
1 CATATCATA
58102400 CATATCAT
1 CATATCAT
58102408 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:58102370 original size:20 final size:20
Alignment explanation
Indices: 58102347--58102409 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
58102337 GAACATCCCG
58102347 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
58102367 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
58102387 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
58102407 TGT
1 TGT
58102410 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:58102492 original size:25 final size:25
Alignment explanation
Indices: 58102446--58102493 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
58102436 ATATATAAAC
* * * *
58102446 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
58102471 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
58102494 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:58103711 original size:27 final size:27
Alignment explanation
Indices: 58103649--58103726 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
58103639 GGGCATATTC
58103649 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
58103676 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
58103703 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
58103727 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:58103797 original size:27 final size:27
Alignment explanation
Indices: 58103771--58104339 Score: 153
Period size: 27 Copynumber: 21.0 Consensus size: 27
58103761 ATCTACAAAC
* * *
58103771 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAT
* ** *
58103798 CAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTATAAA-T
* * *
58103827 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* * *
58103854 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
** * *
58103881 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTCGGTAATTTTATAAAT
* * *
58103907 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTCGGTAATTTTATAAAT
* * *
58103934 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTCGGTAATTTTATAAAT
** * *
58103962 TGAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* ** * * *
58103989 CGAGGGTAAAAT-AGTAATTCTGTAAAT
1 CAAGGGT-ATTTCGGTAATTTTATAAAT
** * *
58104016 CAAGGGTAAAAT-AGTAATTCTATAAAT
1 CAAGGGT-ATTTCGGTAATTTTATAAAT
* * *** * *
58104043 CGACGGTAAAACGATAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* *** * * *
58104070 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
*** *
58104097 CAAGGGTAAAACGATAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* *** * ** *
58104124 CGAGGGTAAAACAGTAATACTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* *** *
58104151 CGAGGGTAAAACGGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
** *** * * *
58104178 TGAGGGTAAAACGATAATTATGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
** *** * * *
58104205 CGGGGGTAAAACGATAATTCTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
** * *
58104232 CGGGGGTACTTT-GGTAATTTTACAAGT
1 CAAGGGTA-TTTCGGTAATTTTATAAAT
* *
58104259 CGAA-GGTATTTCAGTAATTTTACAAAT
1 C-AAGGGTATTTCGGTAATTTTATAAAT
* * * *
58104286 CGAGGGTATTTCAGTATTTTTACAAA-
1 CAAGGGTATTTCGGTAATTTTATAAAT
58104312 CTAAGGGTATTTCGGTAATTTTAGTAAA
1 C-AAGGGTATTTCGGTAATTTTA-TAAA
58104340 CTAAAGTATT
Statistics
Matches: 438, Mismatches: 91, Indels: 25
0.79 0.16 0.05
Matches are distributed among these distances:
26 10 0.02
27 394 0.90
28 19 0.04
29 15 0.03
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAT
Found at i:58103872 original size:56 final size:54
Alignment explanation
Indices: 58103747--58103933 Score: 166
Period size: 54 Copynumber: 3.4 Consensus size: 54
58103737 CATCCTACAA
* * * * *
58103747 TGGTGTTTTGGTAA-ATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAA
1 TGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTCAGTAA-TTTGTAAACCAG
* * * *
58103801 TGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAATCAG
1 TGGTATTT-TGGTAATTTTTACAAA-TCAAGGGTATTTCAGTAA-TTTGTAAACCAG
* ** * **
58103857 GGGTATTTTGGTAA-TTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAG
1 TGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTCAGTAATTT-GTAAACCAG
58103911 TGGTATTTTGGTAA-TTTTACAAA
1 TGGTATTTTGGTAATTTTTACAAA
58103934 CTAGGGGTAT
Statistics
Matches: 108, Mismatches: 20, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
53 3 0.03
54 53 0.49
55 16 0.15
56 36 0.33
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
TGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTCAGTAATTTGTAAACCAG
Done.