Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 207 of 427
Found at i:58103916 original size:54 final size:54
Alignment explanation
Indices: 58103747--58103960 Score: 164
Period size: 54 Copynumber: 3.9 Consensus size: 54
58103737 CATCCTACAA
* * * * * * *** *
58103747 TGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAA
1 TGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAG
* * * * * ** *
58103801 TGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTT-GTAAATCAG
1 TGGTATTT-TGGTAA-TTTTACAAACT-AGGGGTATTTCGGTAA-TTTCACAAACCAG
* *
58103857 GGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAG
1 TGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTCACAAACCAG
* *
58103911 TGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA
1 TGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAA
58103961 TTGAGGGTAT
Statistics
Matches: 129, Mismatches: 23, Indels: 16
0.77 0.14 0.10
Matches are distributed among these distances:
53 3 0.02
54 73 0.57
55 18 0.14
56 32 0.25
57 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
TGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAG
Found at i:58104006 original size:81 final size:81
Alignment explanation
Indices: 58103855--58104007 Score: 209
Period size: 81 Copynumber: 1.9 Consensus size: 81
58103845 TTTGTAAATC
***
58103855 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTAAAAT
*
58103920 GGTAATTTTACAAACT
66 AGTAATTTTACAAACT
* *** *
58103936 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAG-GGTAAAA
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CCAGTGGTAAAA
58104000 TAGTAATT
65 TAGTAATT
58104008 CTGTAAATCA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
81 59 0.95
82 3 0.05
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTAAAAT
AGTAATTTTACAAACT
Found at i:58104023 original size:81 final size:80
Alignment explanation
Indices: 58103946--58104239 Score: 318
Period size: 81 Copynumber: 3.6 Consensus size: 80
58103936 AGGGGTATTT
* *** *
58103946 TGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTG
1 TGGTAATTTTACAAATCGAGGGTAAAAC-GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
58104011 TAAATCAAGGGTAAAA
65 TAAATCAAGGGTAAAA
* * * *
58104027 TAGTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
1 TGGTAATTTTACAAATCGAGGGTAAAACG-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
58104092 TAAATCAAGGGTAAAA
65 TAAATCAAGGGTAAAA
* * * ** * *
58104108 CGATAATTTTATAAATCGAGGGTAAAACAGTAATACTGTAAATCGAGGGTAAAACGGTAATTTTG
1 TGGTAATTTTACAAATCGAGGGTAAAAC-GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
**
58104173 TAAATTGAGGGTAAAA
65 TAAATCAAGGGTAAAA
* * * ** * * *
58104189 CGATAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 TGGTAATTTTACAAATCGAGGGTAAAACG-TAATTTTGTAAATCGAGGGTA
58104240 CTTTGGTAAT
Statistics
Matches: 185, Mismatches: 25, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
80 2 0.01
81 182 0.98
82 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (80 bp):
TGGTAATTTTACAAATCGAGGGTAAAACGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
AAATCAAGGGTAAAA
Found at i:58104250 original size:54 final size:54
Alignment explanation
Indices: 58103975--58104239 Score: 338
Period size: 54 Copynumber: 4.9 Consensus size: 54
58103965 GGGTATTTCT
* * * * *
58103975 GTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTATGTAAATCGAGGGTAAAACGA-TAATTTTGTAAATCGAGGGTAAAACA
* * *
58104029 GTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTATGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
* * *
58104083 GTAATTCTGTAAATCAAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAACA
1 GTAATTATGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
* *
58104137 GTAA-TACTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAAC-
1 GTAATTA-TGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
* * *
58104190 GATAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 G-TAATTATGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTA
58104240 CTTTGGTAAT
Statistics
Matches: 186, Mismatches: 21, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
53 2 0.01
54 181 0.97
55 3 0.02
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
GTAATTATGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
Found at i:58104252 original size:81 final size:81
Alignment explanation
Indices: 58103976--58104239 Score: 352
Period size: 81 Copynumber: 3.3 Consensus size: 81
58103966 GGTATTTCTG
* ** * *
58103976 TAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAA-TAGTAATTCTATA
1 TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGA-TAATTATATA
*
58104040 AATCGACGGTAAAACGA
65 AATCGAGGGTAAAACGA
* * *
58104057 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACGATAATTTTATAA
1 TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGATAATTATATAA
58104122 ATCGAGGGTAAAAC-A
66 ATCGAGGGTAAAACGA
* * ** *
58104137 GTAATACTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAACGATAATTATGTA
1 -TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGATAATTATATA
*
58104202 AATCGGGGGTAAAACGA
65 AATCGAGGGTAAAACGA
*
58104219 TAATTCTGTAAATCGGGGGTA
1 TAATTCTGTAAATCGAGGGTA
58104240 CTTTGGTAAT
Statistics
Matches: 165, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
80 1 0.01
81 162 0.98
82 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (81 bp):
TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGATAATTATATAA
ATCGAGGGTAAAACGA
Found at i:58105751 original size:46 final size:47
Alignment explanation
Indices: 58105676--58105849 Score: 189
Period size: 46 Copynumber: 3.7 Consensus size: 47
58105666 TGTAACCCGC
* * *
58105676 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGAG-CATTAGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTAGCAT
* *
58105722 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTA-CAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG-A-GAC-A-TTAGCAT
* * * *
58105772 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTG-GACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTAGCAT
58105815 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
58105850 GATGCTCAAC
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 2 0.02
46 57 0.53
47 27 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTAGCAT
Found at i:58105842 original size:93 final size:93
Alignment explanation
Indices: 58105683--58105854 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
58105673 CGCCCATAAG
*
58105683 CGAACTCAGACTCAACTCAACGAGCTCGAGCATTAGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGAGCATTAGCATCCATAAGTGAACTCGGACTCAACTCA
58105748 ACGAGTTCGAATGCCTAGTTACATCTCA
66 ACGAGTTCGAATGCCTAGTTACATCTCA
* * * *
58105776 CGAACTCGGACTCAACTCAACGAGTTTG-GACATTTGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAGCTCGAG-CATTAGCATCCATAAGTGAACTCGGACTCAACTC
*
58105840 AACGAGTTCGGATGC
65 AACGAGTTCGAATGC
58105855 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGAGCATTAGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGAATGCCTAGTTACATCTCA
Found at i:58105870 original size:46 final size:46
Alignment explanation
Indices: 58105727--58105863 Score: 115
Period size: 47 Copynumber: 3.0 Consensus size: 46
58105717 AGCATCCATG
*
58105727 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGC-CTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCTC
* * * * *
58105775 A-CGAACTCGGACTCAACTCAACGAGTTTGGACAT-TTGCATCCA--TA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTC
58105820 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
58105864 CTAGTGACAT
Statistics
Matches: 70, Mismatches: 10, Indels: 20
0.70 0.10 0.20
Matches are distributed among these distances:
44 7 0.10
45 3 0.04
46 27 0.39
47 28 0.40
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTC
Found at i:58111787 original size:30 final size:31
Alignment explanation
Indices: 58111747--58111804 Score: 109
Period size: 30 Copynumber: 1.9 Consensus size: 31
58111737 ATAATATTTT
58111747 TTAAAGCCACTCATATCCCCACTAACTCCCA
1 TTAAAGCCACTCATATCCCCACTAACTCCCA
58111778 TTAAA-CCACTCATATCCCCACTAACTC
1 TTAAAGCCACTCATATCCCCACTAACTC
58111805 TCACTAAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.33, C:0.41, G:0.02, T:0.24
Consensus pattern (31 bp):
TTAAAGCCACTCATATCCCCACTAACTCCCA
Found at i:58113557 original size:40 final size:39
Alignment explanation
Indices: 58113512--58113641 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
58113502 CGGAATATAA
58113512 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
58113552 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
58113592 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
58113632 CCGGATATAA
1 CCGGATATAA
58113642 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:58113656 original size:40 final size:40
Alignment explanation
Indices: 58113528--58113679 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
58113518 ATAACCATGT
* * *
58113528 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
58113568 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
58113608 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
58113648 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
58113680 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:58113662 original size:80 final size:80
Alignment explanation
Indices: 58113528--58113677 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
58113518 ATAACCATGT
*
58113528 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
58113592 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
58113608 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
58113671 CCCGGAT
64 CCCGGAT
58113678 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:58115747 original size:29 final size:27
Alignment explanation
Indices: 58115714--58115781 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 27
58115704 TCACACTTAT
* * *
58115714 ATATATTATATATAACCAGATCCACGTAC
1 ATATATTATATATAACAAAACCCACG--C
58115743 ATATA-TATTATATAACAAAACCCACGC
1 ATATATTA-TATATAACAAAACCCACGC
58115770 ATATATTATATA
1 ATATATTATATA
58115782 GAGAGAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 10 0.29
28 4 0.12
29 20 0.59
ACGTcount: A:0.46, C:0.18, G:0.04, T:0.32
Consensus pattern (27 bp):
ATATATTATATATAACAAAACCCACGC
Found at i:58115866 original size:30 final size:30
Alignment explanation
Indices: 58115830--58115901 Score: 92
Period size: 32 Copynumber: 2.3 Consensus size: 30
58115820 TATTATGCTC
*
58115830 TCACACACAC-GCAATAATTAAATGCACAAT
1 TCACACACACAG-AACAATTAAATGCACAAT
*
58115860 TCACACACACAAAGAACAATTAAATGTACAAT
1 TCACACACAC--AGAACAATTAAATGCACAAT
58115892 TCACACACAC
1 TCACACACAC
58115902 TTATCATGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
30 10 0.27
32 26 0.70
33 1 0.03
ACGTcount: A:0.49, C:0.28, G:0.06, T:0.18
Consensus pattern (30 bp):
TCACACACACAGAACAATTAAATGCACAAT
Found at i:58118533 original size:21 final size:21
Alignment explanation
Indices: 58118504--58118634 Score: 104
Period size: 21 Copynumber: 6.3 Consensus size: 21
58118494 GTGTTTTACT
* *
58118504 TTCTGTTTAGCTCTTATGAGC
1 TTCTGTTCAGCTCTTACGAGC
* * ** * *
58118525 TTCTATTTAATTCCTACGAGT
1 TTCTGTTCAGCTCTTACGAGC
*
58118546 TTCTATTCAGCTCTTACGAGC
1 TTCTGTTCAGCTCTTACGAGC
* * *
58118567 TTCTGTTCAACTCTTAAGAGT
1 TTCTGTTCAGCTCTTACGAGC
*
58118588 TTCTGTTCAGCTCTTACGAGA
1 TTCTGTTCAGCTCTTACGAGC
* * *
58118609 TTTTGTTTAGCT-TT-CAAGC
1 TTCTGTTCAGCTCTTACGAGC
58118628 TTCTGTT
1 TTCTGTT
58118635 AGCATATCTA
Statistics
Matches: 87, Mismatches: 23, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
19 9 0.10
20 2 0.02
21 76 0.87
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTACGAGC
Found at i:58118567 original size:42 final size:42
Alignment explanation
Indices: 58118503--58118607 Score: 138
Period size: 42 Copynumber: 2.5 Consensus size: 42
58118493 CGTGTTTTAC
* * * * *
58118503 TTTCTGTTTAGCTCTTATGAGCTTCTATTTAATTCCTACGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCTATTCAACTCCTAAGAG
* * *
58118545 TTTCTATTCAGCTCTTACGAGCTTCTGTTCAACTCTTAAGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCTATTCAACTCCTAAGAG
58118587 TTTCTGTTCAGCTCTTACGAG
1 TTTCTGTTCAGCTCTTACGAG
58118608 ATTTTGTTTA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTACGAGCTTCTATTCAACTCCTAAGAG
Found at i:58120213 original size:11 final size:11
Alignment explanation
Indices: 58120197--58120221 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
58120187 AAAATAGAAA
58120197 GGATTTAGCCC
1 GGATTTAGCCC
58120208 GGATTTAGCCC
1 GGATTTAGCCC
58120219 GGA
1 GGA
58120222 CCCTTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24
Consensus pattern (11 bp):
GGATTTAGCCC
Found at i:58134737 original size:20 final size:20
Alignment explanation
Indices: 58134706--58134760 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
58134696 ATATTTAGTC
58134706 AAACTA-TTAATTGAGAAAA
1 AAACTAGTTAATTGAGAAAA
* **
58134725 AAATTAGTTAATTTGATCAAA
1 AAACTAGTTAA-TTGAGAAAA
*
58134746 TAACTAGTTAATTGA
1 AAACTAGTTAATTGA
58134761 TTTAATTCCA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 5 0.17
20 8 0.28
21 16 0.55
ACGTcount: A:0.49, C:0.05, G:0.11, T:0.35
Consensus pattern (20 bp):
AAACTAGTTAATTGAGAAAA
Found at i:58135239 original size:21 final size:21
Alignment explanation
Indices: 58135210--58135274 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
58135200 ATGTTTTACT
*
58135210 TTCTGTTTAGCTCTTATGAGC
1 TTCTATTTAGCTCTTATGAGC
** * *
58135231 TTCTATTTAATTCCTATGAGT
1 TTCTATTTAGCTCTTATGAGC
* *
58135252 TTCTATTCAGCTCTTACGAGC
1 TTCTATTTAGCTCTTATGAGC
58135273 TT
1 TT
58135275 TTGTTCAACT
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (21 bp):
TTCTATTTAGCTCTTATGAGC
Found at i:58135273 original size:42 final size:41
Alignment explanation
Indices: 58135209--58135319 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 41
58135199 CATGTTTTAC
* * *
58135209 TTTCTGTTTAGCTCTTATGAGCTTCTATTTAATTCCT-ATGAG
1 TTTCTGTTCAGCTCTTA-GAGCTTCTATTCAACTCCTAAT-AG
* * * *
58135251 TTTCTATTCAGCTCTTACGAGCTTTTGTTCAACTCTTAATAG
1 TTTCTGTTCAGCTCTTA-GAGCTTCTATTCAACTCCTAATAG
58135293 TTTCTGTTCAGCTCTT-GAGCTTCTATT
1 TTTCTGTTCAGCTCTTAGAGCTTCTATT
58135320 AGCGTATCTA
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
40 9 0.16
42 46 0.81
43 2 0.04
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.49
Consensus pattern (41 bp):
TTTCTGTTCAGCTCTTAGAGCTTCTATTCAACTCCTAATAG
Found at i:58135300 original size:21 final size:21
Alignment explanation
Indices: 58135248--58135308 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
58135238 TAATTCCTAT
* *
58135248 GAGTTTCTATTCAGCTCTTAC
1 GAGTTTCTGTTCAGCTCTTAA
*
58135269 GAGCTTT-TGTTCAACTCTTAA
1 GAG-TTTCTGTTCAGCTCTTAA
*
58135290 TAGTTTCTGTTCAGCTCTT
1 GAGTTTCTGTTCAGCTCTT
58135309 GAGCTTCTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 3 0.09
21 27 0.82
22 3 0.09
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (21 bp):
GAGTTTCTGTTCAGCTCTTAA
Found at i:58141051 original size:15 final size:16
Alignment explanation
Indices: 58141031--58141087 Score: 61
Period size: 15 Copynumber: 3.8 Consensus size: 16
58141021 ACTTTAAAAA
58141031 CAATC-TTCAATCCTT
1 CAATCTTTCAATCCTT
*
58141046 CAATCTTT--ATCTATT
1 CAATCTTTCAATC-CTT
58141061 C-ATCTTTCAAT-CTT
1 CAATCTTTCAATCCTT
58141075 CAATCTTTCAATC
1 CAATCTTTCAATC
58141088 AAGCCCTCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
14 12 0.35
15 18 0.53
16 4 0.12
ACGTcount: A:0.26, C:0.28, G:0.00, T:0.46
Consensus pattern (16 bp):
CAATCTTTCAATCCTT
Found at i:58141076 original size:7 final size:8
Alignment explanation
Indices: 58141031--58141087 Score: 61
Period size: 8 Copynumber: 7.6 Consensus size: 8
58141021 ACTTTAAAAA
58141031 CAATC-TT
1 CAATCTTT
*
58141038 CAATCCTT
1 CAATCTTT
58141046 CAATCTTT
1 CAATCTTT
58141054 --ATCTATT
1 CAATCT-TT
58141061 C-ATCTTT
1 CAATCTTT
58141068 CAATC-TT
1 CAATCTTT
58141075 CAATCTTT
1 CAATCTTT
58141083 CAATC
1 CAATC
58141088 AAGCCCTCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
6 4 0.09
7 17 0.39
8 23 0.52
ACGTcount: A:0.26, C:0.28, G:0.00, T:0.46
Consensus pattern (8 bp):
CAATCTTT
Found at i:58147828 original size:21 final size:20
Alignment explanation
Indices: 58147799--58147847 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
58147789 AATAATAAAA
* *
58147799 TAAATAAATAATTCATGAAGT
1 TAAAAAAATAACTC-TGAAGT
* *
58147820 TAAAAAAATAACTCTTAATT
1 TAAAAAAATAACTCTGAAGT
58147840 TAAAAAAA
1 TAAAAAAA
58147848 ATAAACGTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (20 bp):
TAAAAAAATAACTCTGAAGT
Found at i:58147858 original size:20 final size:21
Alignment explanation
Indices: 58147821--58147859 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
58147811 TCATGAAGTT
* *
58147821 AAAAAAATAACTCTTAATTTA
1 AAAAAAATAACACGTAATTTA
58147842 AAAAAAATAA-ACGTAATT
1 AAAAAAATAACACGTAATT
58147860 ATCTAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.62, C:0.08, G:0.03, T:0.28
Consensus pattern (21 bp):
AAAAAAATAACACGTAATTTA
Found at i:58155801 original size:69 final size:69
Alignment explanation
Indices: 58155690--58155828 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 69
58155680 CTCAAGACTA
*
58155690 TCAGCCCTACCACCACTACAAAACCTGCTGAAAATCCTACAGCCACTATTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTATTATTCCTGTTTTGGAA
58155755 CCTG
66 CCTG
*
58155759 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTATTATTCCTGTTTTGGAA
58155824 CCTG
66 CCTG
58155828 T
1 T
58155829 TTTTCCTATC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.27
Consensus pattern (69 bp):
TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTATTATTCCTGTTTTGGAA
CCTG
Found at i:58157215 original size:129 final size:137
Alignment explanation
Indices: 58156965--58157224 Score: 320
Period size: 129 Copynumber: 1.9 Consensus size: 137
58156955 GCTTCTGTTT
* * *
58156965 TCAGGCACACTTAGGCACATGCCTTCACCATACTGCTTAGCTCATACATAGACACAGAAACAGTA
1 TCAGGCACACCTAGGCACATGCCTTCACAATACTGCTTAGCGCATACATAGACACAGAAACAGTA
*
58157030 ATCTCCAGACATGGACAATTCAATAGGAAACAACAAAAACAAAAGGGTCCAATTATTAGAAATGC
66 ATCTCCAAACATGGAC-A--CAATAGGAAACAACAAAAACAAAAGGGTCCAATTATTAGAAATGC
58157095 ACACTGACAA
128 ACACTGACAA
* *
58157105 TCAGGCACACCTAGGCACATGCCTTCACAATACTGCTT-G-GC-TA-A-A-ACATAGAAATAGT-
1 TCAGGCACACCTAGGCACATGCCTTCACAATACTGCTTAGCGCATACATAGACACAGAAACAGTA
* * * ** * *
58157163 GTCTCCAAACATGGAC-CATTAGGAAACCATGAAACCAAGAGGGTCCAATTATTAGAAATGCA
66 ATCTCCAAACATGGACACAATAGGAAACAACAAAAACAAAAGGGTCCAATTATTAGAAATGCA
58157225 TATTGCTAAG
Statistics
Matches: 107, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
129 40 0.37
133 14 0.13
134 11 0.10
135 1 0.01
136 1 0.01
137 2 0.02
138 1 0.01
139 1 0.01
140 36 0.34
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.20
Consensus pattern (137 bp):
TCAGGCACACCTAGGCACATGCCTTCACAATACTGCTTAGCGCATACATAGACACAGAAACAGTA
ATCTCCAAACATGGACACAATAGGAAACAACAAAAACAAAAGGGTCCAATTATTAGAAATGCACA
CTGACAA
Found at i:58158054 original size:25 final size:25
Alignment explanation
Indices: 58158020--58158069 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
58158010 ATCATGGCAG
58158020 AAAGAACTATTTTCAACAAACCAAT
1 AAAGAACTATTTTCAACAAACCAAT
58158045 AAAGAACTATTTTCAACAAACCAAT
1 AAAGAACTATTTTCAACAAACCAAT
58158070 CTCATTAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.52, C:0.20, G:0.04, T:0.24
Consensus pattern (25 bp):
AAAGAACTATTTTCAACAAACCAAT
Found at i:58161603 original size:26 final size:26
Alignment explanation
Indices: 58161567--58161676 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
58161557 TGATACAAAT
58161567 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
58161593 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
58161619 TGATAATAGGTTAGATAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
58161645 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
58161671 TGATAA
1 TGATAA
58161677 GAATATCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:58163697 original size:137 final size:137
Alignment explanation
Indices: 58163451--58163737 Score: 511
Period size: 137 Copynumber: 2.1 Consensus size: 137
58163441 GAGTAGTCTC
*
58163451 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCTTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
58163516 TGTTATCTGAATAAGGGGCTAAGGGCCAATTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
58163581 ACTGTTA
131 ACTGTTA
58163588 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* * *
58163653 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGTCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
58163718 ACTGTTA
131 ACTGTTA
**
58163725 CCTGAATGGGCTT
1 CCCAAATGGGCTT
58163738 AGGCCCAATA
Statistics
Matches: 143, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
137 143 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
ACTGTTA
Found at i:58176141 original size:39 final size:39
Alignment explanation
Indices: 58176096--58176175 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
58176086 GGGGTTTTAA
*
58176096 TTAGAAAGAGATTTCAGTTAATCAACCTAGAGTCAGTTG
1 TTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTG
58176135 TTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTG
1 TTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTG
58176174 TT
1 TT
58176176 CTTACTTTCG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (39 bp):
TTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTG
Found at i:58177365 original size:22 final size:23
Alignment explanation
Indices: 58177337--58177398 Score: 92
Period size: 22 Copynumber: 2.8 Consensus size: 23
58177327 GCAAATACGT
*
58177337 TTGGCACACAGCCATAAT-TAGG
1 TTGGCACAAAGCCATAATATAGG
*
58177359 TTGGCACAGAGCCAT-ATATAGG
1 TTGGCACAAAGCCATAATATAGG
58177381 TTGGCACAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
58177399 CAGAATAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATATAGG
Found at i:58177607 original size:41 final size:42
Alignment explanation
Indices: 58177543--58177667 Score: 153
Period size: 42 Copynumber: 3.0 Consensus size: 42
58177533 TAAAAGCCAC
* * * * *
58177543 CGGCGAATCCATGATCGTCAAGCAACCATACGATCCTTAA-T
1 CGGCGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
* *
58177584 CGGCGGATCCACGGTCGTTAAGCAACCATGCAATCCTCAATT
1 CGGCGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
** *
58177626 CGATGGATCCACGGTCATCAAGCAACCATGCGATCCTCAATT
1 CGGCGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
58177668 TCTTCTTCCG
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
41 33 0.46
42 38 0.54
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (42 bp):
CGGCGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
Found at i:58177934 original size:27 final size:27
Alignment explanation
Indices: 58177904--58177976 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
58177894 TTTCACCCTA
* *
58177904 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAAATCTACAAAC
* *
58177931 CAAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAAATCTACAAAC
* *
58177958 CAATGGTATTTCTGTAAAT
1 CAAGGGTATTTCGGTAAAT
58177977 TTTAAAAGTC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAAATCTACAAAC
Found at i:58178017 original size:27 final size:27
Alignment explanation
Indices: 58177924--58178273 Score: 280
Period size: 27 Copynumber: 13.0 Consensus size: 27
58177914 TTGGTAAATC
* *
58177924 TACAAACCAAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * *
58177951 TACAAACCAATGGTATTTCTGTAAATTT
1 TACAAATCAAGGGTATTTCAGT-AATTT
**
58177979 TA-AAAGTCAAGGGTATTTTTGTAATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTT
** * *
58178006 TGTAAATTAAGGGTATTTCTGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * *
58178033 TCCAAATCAAGAGTATTTTAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * * **
58178060 TCCAAATTAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
*
58178087 TACAAATCGAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
*
58178114 TACAAGTCAAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * *
58178141 TACAAGTCGAGGATATTTC-GATAATTT
1 TACAAATCAAGGGTATTTCAG-TAATTT
* * * **
58178168 CACAAACCAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* **
58178195 TACAAA-CTAGGGGTATTTTGGTAATTT
1 TACAAATC-AAGGGTATTTCAGTAATTT
*
58178222 TACAAA-CTAGGGGTA-TTCAGTAATTT
1 TACAAATC-AAGGGTATTTCAGTAATTT
** *
58178248 TGTAAA-CTAAGAGTATTTCAGTAATT
1 TACAAATC-AAGGGTATTTCAGTAATT
58178274 CTACCCTACA
Statistics
Matches: 274, Mismatches: 42, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
26 22 0.08
27 228 0.83
28 24 0.09
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCAGTAATTT
Found at i:58178254 original size:26 final size:27
Alignment explanation
Indices: 58177924--58178326 Score: 230
Period size: 27 Copynumber: 14.9 Consensus size: 27
58177914 TTGGTAAATC
* * *
58177924 TACAAACCAAGGGTATTTCGGTAATTT
1 TACAAACTAGGGGTATTTCAGTAATTT
* ** *
58177951 TACAAACCAATGGTATTTCTGTAAATTT
1 TACAAACTAGGGGTATTTCAGT-AATTT
* * **
58177979 TA-AAAGTCAAGGGTATTTTTGTAATTT
1 TACAAACT-AGGGGTATTTCAGTAATTT
** * * *
58178006 TGTAAATTAAGGGTATTTCTGTAATTT
1 TACAAACTAGGGGTATTTCAGTAATTT
* * * *
58178033 TCCAAA-TCAAGAGTATTTTAGTAATTT
1 TACAAACT-AGGGGTATTTCAGTAATTT
* * **
58178060 TCCAAATTAGGGGTATTTTGGTAATTT
1 TACAAACTAGGGGTATTTCAGTAATTT
*
58178087 TACAAA-TCGAGGGTATTTCAGTAATTT
1 TACAAACTAG-GGGTATTTCAGTAATTT
* *
58178114 TAC-AAGTCAAGGGTATTTCAGTAATTT
1 TACAAACT-AGGGGTATTTCAGTAATTT
* * *
58178141 TAC-AAGTCGAGGATATTTC-GATAATTT
1 TACAAACTAG-GGGTATTTCAG-TAATTT
* * **
58178168 CACAAACCAGGGGTATTTTGGTAATTT
1 TACAAACTAGGGGTATTTCAGTAATTT
**
58178195 TACAAACTAGGGGTATTTTGGTAATTT
1 TACAAACTAGGGGTATTTCAGTAATTT
58178222 TACAAACTAGGGGTA-TTCAGTAATTT
1 TACAAACTAGGGGTATTTCAGTAATTT
** * * *
58178248 TGTAAACTAAGAGTATTTCAGTAATTC
1 TACAAACTAGGGGTATTTCAGTAATTT
** * * *
58178275 TACCCTAC-AGGGGCATTTTAGTAATTC
1 TA-CAAACTAGGGGTATTTCAGTAATTT
**
58178302 TACTCTAC-AGGGGTATTTCAGTAAT
1 TAC-AAACTAGGGGTATTTCAGTAAT
58178327 ACTAGCCTAC
Statistics
Matches: 310, Mismatches: 51, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
26 27 0.09
27 253 0.82
28 30 0.10
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.38
Consensus pattern (27 bp):
TACAAACTAGGGGTATTTCAGTAATTT
Found at i:58178292 original size:27 final size:27
Alignment explanation
Indices: 58178262--58178338 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
58178252 AACTAAGAGT
58178262 ATTTCAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* * *
58178289 ATTTTAGTAATTCTACTCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
58178316 ATTTCAGTAATACTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAG
58178339 ATATGAGATT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:58180370 original size:18 final size:18
Alignment explanation
Indices: 58180349--58180397 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
58180339 CTTCTTACTA
*
58180349 TTTAAAACCTTTGGCCAT
1 TTTAAAACCTGTGGCCAT
58180367 TTTAAAACCTGTGGCCAT
1 TTTAAAACCTGTGGCCAT
58180385 TTTAAAACCTGTG
1 TTTAAAACCTGTG
58180398 AAACGTTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (18 bp):
TTTAAAACCTGTGGCCAT
Found at i:58180941 original size:25 final size:25
Alignment explanation
Indices: 58180907--58180957 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
58180897 TACAAAAATG
*
58180907 TATGCTAACCCATCCCATCCGACCC
1 TATGCTAACCCATCCCATCCAACCC
58180932 TATGCTAACCCATCCCATCCAACCC
1 TATGCTAACCCATCCCATCCAACCC
58180957 T
1 T
58180958 GCACTTGCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.47, G:0.06, T:0.22
Consensus pattern (25 bp):
TATGCTAACCCATCCCATCCAACCC
Found at i:58181132 original size:22 final size:22
Alignment explanation
Indices: 58181074--58181124 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
58181064 GCTCAAGGTC
*
58181074 GTAAACAGGATAGCACATAGCA
1 GTAAACAAGATAGCACATAGCA
*
58181096 GTAAACAAGATAGCACATAGCC
1 GTAAACAAGATAGCACATAGCA
58181118 GTAAACA
1 GTAAACA
58181125 TTGAAGCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.47, C:0.20, G:0.20, T:0.14
Consensus pattern (22 bp):
GTAAACAAGATAGCACATAGCA
Found at i:58181592 original size:41 final size:41
Alignment explanation
Indices: 58181534--58181690 Score: 233
Period size: 41 Copynumber: 3.8 Consensus size: 41
58181524 AAAAGCCACC
58181534 GGTGGATCCACGATCGTCAAGCAACCATACGATCCTTAATT
1 GGTGGATCCACGATCGTCAAGCAACCATACGATCCTTAATT
* * *
58181575 GGTGGATCTACGGTCGTCAAGCAACCATGCGATCCTTAATT
1 GGTGGATCCACGATCGTCAAGCAACCATACGATCCTTAATT
* * * *
58181616 GGTGGATCTACGATCGTCAAGCAACCATGCGATCCTCAATC
1 GGTGGATCCACGATCGTCAAGCAACCATACGATCCTTAATT
* *
58181657 GGTGGATCCACGGTCATCAAGCAACCATACGATC
1 GGTGGATCCACGATCGTCAAGCAACCATACGATC
58181691 TTCAATTTCT
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 106 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (41 bp):
GGTGGATCCACGATCGTCAAGCAACCATACGATCCTTAATT
Found at i:58181964 original size:27 final size:27
Alignment explanation
Indices: 58181934--58182006 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
58181924 TTTCACCATA
* * *
58181934 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGATAAATCTACAAAC
* *
58181961 CAAGGGTATTTCGATAATTTTACAAAC
1 CAAGGGTATTTCGATAAATCTACAAAC
* *
58181988 CAATGGTATTTCTATAAAT
1 CAAGGGTATTTCGATAAAT
58182007 TTTGAAAGTT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (27 bp):
CAAGGGTATTTCGATAAATCTACAAAC
Found at i:58182023 original size:28 final size:27
Alignment explanation
Indices: 58181992--58182249 Score: 125
Period size: 27 Copynumber: 9.6 Consensus size: 27
58181982 ACAAACCAAT
*
58181992 GGTATTTCTATAAATTTTG-AAAGTTAAG
1 GGTATTTCTGT-AATTTTGTAAA-TTAAG
* *
58182020 GGTATTTTTGTAATTTTGTAAATTAGG
1 GGTATTTCTGTAATTTTGTAAATTAAG
** *
58182047 GGTATTTCTGTAATTTTCCAAATAAAG
1 GGTATTTCTGTAATTTTGTAAATTAAG
* * ** *
58182074 TGTATTTCGGTAATTTTCCAAATTAGG
1 GGTATTTCTGTAATTTTGTAAATTAAG
** **
58182101 GGTATTT-TGGTAATTTTACAAATCGAG
1 GGTATTTCT-GTAATTTTGTAAATTAAG
** ** *
58182128 GGTATTT-TGGTAATTTTACAGGTCAAG
1 GGTATTTCT-GTAATTTTGTAAATTAAG
** * *
58182155 GGTATTTC-GATAATTTTACAAACTAGG
1 GGTATTTCTG-TAATTTTGTAAATTAAG
** *
58182182 GGTATTT-TGGTAATTTTACAAA-TCAG
1 GGTATTTCT-GTAATTTTGTAAATTAAG
* **
58182208 GTGTA-TTCAGTAATTTTGTAAAGCAAG
1 G-GTATTTCTGTAATTTTGTAAATTAAG
*
58182235 GGTATTTCAGTAATT
1 GGTATTTCTGTAATT
58182250 CTACCCTGTA
Statistics
Matches: 187, Mismatches: 33, Indels: 21
0.78 0.14 0.09
Matches are distributed among these distances:
26 20 0.11
27 154 0.82
28 13 0.07
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGTATTTCTGTAATTTTGTAAATTAAG
Found at i:58182087 original size:54 final size:54
Alignment explanation
Indices: 58182017--58182249 Score: 175
Period size: 54 Copynumber: 4.3 Consensus size: 54
58182007 TTTGAAAGTT
** ** *
58182017 AAGGGTATTTTTGTAATTTTGTAAATTAGGGGTATTTCT-GTAATTTTCCAAATA
1 AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTATTT-TGGTAATTTTACAAATA
* *
58182071 AAGTGTATTTCGGTAATTTTCCAAATTAGGGGTATTTTGGTAATTTTACAAATC
1 AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTATTTTGGTAATTTTACAAATA
* * * ** * * * *
58182125 GAGGGTATTTTGGTAATTTTACAGGTCAAGGGTATTTCGATAATTTTACAAACT-
1 AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTATTTTGGTAATTTTACAAA-TA
* * * * * ** ** **
58182179 AGGGGTATTTTGGTAATTTTACAAATCAGGTGTA-TTCAGTAATTTTGTAAAGC
1 AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTATTTTGGTAATTTTACAAATA
*
58182232 AAGGGTATTTCAGTAATT
1 AAGGGTATTTCGGTAATT
58182250 CTACCCTGTA
Statistics
Matches: 145, Mismatches: 31, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
53 29 0.20
54 115 0.79
55 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (54 bp):
AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTATTTTGGTAATTTTACAAATA
Found at i:58182117 original size:81 final size:81
Alignment explanation
Indices: 58181937--58182242 Score: 244
Period size: 81 Copynumber: 3.8 Consensus size: 81
58181927 CACCATACAA
* * * ** * ** * *
58181937 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTC-GATAATTTTACAAACCAATGGTATTTCT
1 GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCTG-TAATTTTACAAATAAAGGGTATTTCG
** *
58182001 ATAAATTTTGA-AAGTTAA
65 AT-AATTTT-ACAAACTAG
* ** * * *
58182019 GGGTATTTTTGTAATTTTGTAAATTAGGGGTATTTCTGTAATTTTCCAAATAAAGTGTATTTCGG
1 GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCTGTAATTTTACAAATAAAGGGTATTTCGA
* *
58182084 TAATTTTCCAAATTAG
66 TAATTTTACAAACTAG
* ** *
58182100 GGGTATTTTGGTAATTTTACAAA-TCGAGGGTATTT-TGGTAATTTTACAGGTCAAGGGTATTTC
1 GGGTATTTTGGTAATTTTACAAATTAG-GGGTATTTCT-GTAATTTTACAAATAAAGGGTATTTC
58182163 GATAATTTTACAAACTAG
64 GATAATTTTACAAACTAG
* * * ** **
58182181 GGGTATTTTGGTAATTTTACAAATCAGGTGTA-TTCAGTAATTTTGTAAAGCAAGGGTATTTC
1 GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCTGTAATTTTACAAATAAAGGGTATTTC
58182243 AGTAATTCTA
Statistics
Matches: 178, Mismatches: 40, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
80 26 0.15
81 102 0.57
82 49 0.28
83 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCTGTAATTTTACAAATAAAGGGTATTTCGA
TAATTTTACAAACTAG
Found at i:58182200 original size:27 final size:26
Alignment explanation
Indices: 58182019--58182214 Score: 178
Period size: 27 Copynumber: 7.3 Consensus size: 26
58182009 TGAAAGTTAA
* **
58182019 GGGTATTTTTGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTACAAA-TAG
* *
58182046 GGGTATTTCT-GTAATTTTCCAAATAAA
1 GGGTATTT-TGGTAATTTTACAAAT-AG
* * *
58182073 GTGTATTTCGGTAATTTTCCAAATTAG
1 GGGTATTTTGGTAATTTTACAAA-TAG
*
58182100 GGGTATTTTGGTAATTTTACAAATCG
1 GGGTATTTTGGTAATTTTACAAATAG
** *
58182126 AGGGTATTTTGGTAATTTTACAGGTCAA
1 -GGGTATTTTGGTAATTTTACAAAT-AG
* *
58182154 GGGTATTTCGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAA-TAG
58182181 GGGTATTTTGGTAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTTACAAAT-AG
*
58182208 GTGTATT
1 GGGTATT
58182215 CAGTAATTTT
Statistics
Matches: 139, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
26 4 0.03
27 132 0.95
28 3 0.02
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.43
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAATAG
Found at i:58182300 original size:27 final size:27
Alignment explanation
Indices: 58182231--58182314 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
58182221 TTTTGTAAAG
*
58182231 CAAGGGTATTTCAGTAATTCTACCCTG
1 CAAGGGTATTTCAGTAATTCTACCCTA
* * ** *
58182258 TAGGGGCGTTTTAGTAATTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* * *
58182285 CAAGGGTATTACAGTAATACTAGCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
58182312 CAA
1 CAA
58182315 ATATGAGATT
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTCTACCCTA
Found at i:58187653 original size:3 final size:3
Alignment explanation
Indices: 58187631--58187691 Score: 95
Period size: 3 Copynumber: 20.3 Consensus size: 3
58187621 TTTTATCTAG
* * *
58187631 TTA TTA ATA TTA TTA CTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
58187679 TTA TTA TTA TTA T
1 TTA TTA TTA TTA T
58187692 GATTTCTTTA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:58187738 original size:15 final size:15
Alignment explanation
Indices: 58187667--58187732 Score: 61
Period size: 15 Copynumber: 4.5 Consensus size: 15
58187657 ATTATTATTA
*
58187667 TTATTATTATTATT-A
1 TTATTATTATT-TTCT
58187682 TTATTATTATGATTTCT
1 TTATTATTAT--TTTCT
58187699 TTA-T-TTA-TTTCT
1 TTATTATTATTTTCT
58187711 TTATTATTATTTTCT
1 TTATTATTATTTTCT
58187726 TT-TTATT
1 TTATTATT
58187733 GGTTTTACTA
Statistics
Matches: 44, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
12 8 0.18
13 1 0.02
14 8 0.18
15 20 0.45
16 3 0.07
17 4 0.09
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.71
Consensus pattern (15 bp):
TTATTATTATTTTCT
Found at i:58192539 original size:51 final size:52
Alignment explanation
Indices: 58192426--58192602 Score: 224
Period size: 51 Copynumber: 3.5 Consensus size: 52
58192416 ACTGGTGACT
* * *
58192426 CAAGTATGGTACTATGTGAAGGCCACTTTG-GAA-AGAGATAGC-TTGGTAA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
58192475 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
* * *
58192527 CAAGTGT-GTACTATGTAAAGGCCACTTTGTGAAG-AAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTC-A
*
58192577 CAAAG-GTGGTACTATGTGCAGGCCAC
1 C-AAGTGTGGTACTATGTGAAGGCCAC
58192603 CAGGTATCCA
Statistics
Matches: 114, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
49 31 0.27
50 17 0.15
51 53 0.46
52 13 0.11
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
Found at i:58197224 original size:43 final size:43
Alignment explanation
Indices: 58197176--58197261 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
58197166 AGGCTTATGA
58197176 CATAGTCA-ATTGGGGTTTTATTGACACGTATTTGACTGTTGCT
1 CATAGTCAGA-TGGGGTTTTATTGACACGTATTTGACTGTTGCT
* * *
58197219 CATAGTCAGATGGGGTTTTATTGACATGTTTTTGATTGTTGCT
1 CATAGTCAGATGGGGTTTTATTGACACGTATTTGACTGTTGCT
58197262 AGGATTCCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
43 38 0.97
44 1 0.03
ACGTcount: A:0.20, C:0.12, G:0.24, T:0.44
Consensus pattern (43 bp):
CATAGTCAGATGGGGTTTTATTGACACGTATTTGACTGTTGCT
Found at i:58202247 original size:32 final size:32
Alignment explanation
Indices: 58202211--58202275 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
58202201 AATATAAAGT
58202211 ATGAAATATAATGTAGTTTTTCATTTTTTAGG
1 ATGAAATATAATGTAGTTTTTCATTTTTTAGG
58202243 ATGAAATATAATGTAGTTTTTCATTTTTTAGG
1 ATGAAATATAATGTAGTTTTTCATTTTTTAGG
58202275 A
1 A
58202276 CAATTTATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.32, C:0.03, G:0.15, T:0.49
Consensus pattern (32 bp):
ATGAAATATAATGTAGTTTTTCATTTTTTAGG
Found at i:58202305 original size:2 final size:2
Alignment explanation
Indices: 58202288--58202324 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
58202278 ATTTATTAAG
*
58202288 TA TA -A TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
58202325 GCATTTAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:58202770 original size:22 final size:22
Alignment explanation
Indices: 58202729--58202770 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
58202719 TTATATATTA
* **
58202729 TGCTTTATATAAAATTATTAAT
1 TGCTGTATATAAAAGAATTAAT
58202751 TGCTGTATATAAAAGAATTA
1 TGCTGTATATAAAAGAATTA
58202771 CCTTCTATCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.43
Consensus pattern (22 bp):
TGCTGTATATAAAAGAATTAAT
Found at i:58203864 original size:18 final size:18
Alignment explanation
Indices: 58203794--58203865 Score: 56
Period size: 18 Copynumber: 3.8 Consensus size: 18
58203784 ATAATTTTTT
* *
58203794 TAATAATAATAACAATAA
1 TAATAATAGTAATAATAA
* *
58203812 TTATACTAGTAACTATCATAA
1 TAATAATAGTAA-TA--ATAA
*
58203833 TACTAATA-TAAATAATAA
1 TAATAATAGT-AATAATAA
58203851 TAATAATAGTAATAA
1 TAATAATAGTAATAA
58203866 GAACAATATA
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
18 25 0.61
19 2 0.05
20 3 0.07
21 11 0.27
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (18 bp):
TAATAATAGTAATAATAA
Found at i:58203983 original size:21 final size:20
Alignment explanation
Indices: 58203957--58203996 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
58203947 TAGATAATAA
58203957 AAAATAATAATAATAGATGAT
1 AAAATAATAATAATA-ATGAT
*
58203978 AAAATAGTAATAATAATGA
1 AAAATAATAATAATAATGA
58203997 ATGCATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (20 bp):
AAAATAATAATAATAATGAT
Found at i:58204007 original size:24 final size:24
Alignment explanation
Indices: 58203945--58203994 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
58203935 TAAATAGATG
* *
58203945 AATAGATAATAAAA-AATAATAAT
1 AATAGATGATAAAATAGTAATAAT
58203968 AATAGATGATAAAATAGTAATAAT
1 AATAGATGATAAAATAGTAATAAT
58203992 AAT
1 AAT
58203995 GAATGCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (24 bp):
AATAGATGATAAAATAGTAATAAT
Found at i:58204037 original size:27 final size:27
Alignment explanation
Indices: 58203958--58204063 Score: 76
Period size: 27 Copynumber: 3.9 Consensus size: 27
58203948 AGATAATAAA
**
58203958 AAATAATAAT-AATAGATGATAAAATAGT
1 AAATAATAATGAA-AGAAAATAAAA-AGT
*
58203986 -AATAATAATGAATGCATAAAT-AAAA-T
1 AAATAATAATGAAAG-A-AAATAAAAAGT
58204012 AAATAATCAATGAAAGAAAATAAAAAGT
1 AAATAAT-AATGAAAGAAAATAAAAAGT
* * *
58204040 TAAGAAAAATGAAAGAATAATAAA
1 AAATAATAATGAAAGAA-AATAAA
58204064 TAAATGAATA
Statistics
Matches: 63, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
26 5 0.08
27 32 0.51
28 24 0.38
29 2 0.03
ACGTcount: A:0.65, C:0.02, G:0.10, T:0.23
Consensus pattern (27 bp):
AAATAATAATGAAAGAAAATAAAAAGT
Found at i:58204957 original size:4 final size:4
Alignment explanation
Indices: 58204948--58204972 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
58204938 AAAAACAAGT
58204948 AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
58204973 GATATCAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:58205186 original size:20 final size:21
Alignment explanation
Indices: 58205163--58205201 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
58205153 TCTCTACTAT
58205163 TTGTATT-GCTTCTATTTTGC
1 TTGTATTCGCTTCTATTTTGC
* *
58205183 TTGTTTTCGTTTCTATTTT
1 TTGTATTCGCTTCTATTTT
58205202 TTGTTCTTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.08, C:0.13, G:0.13, T:0.67
Consensus pattern (21 bp):
TTGTATTCGCTTCTATTTTGC
Found at i:58210069 original size:29 final size:28
Alignment explanation
Indices: 58210037--58210091 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
58210027 GCGAGTTATA
* *
58210037 CTGATTTGGCTTCGGGCTATGCATATCGG
1 CTGATTTAGCTTCGGGCCATG-ATATCGG
58210066 CTGATTTAGCTTCGGGCCATGATATC
1 CTGATTTAGCTTCGGGCCATGATATC
58210092 AATACTCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.16, C:0.22, G:0.27, T:0.35
Consensus pattern (28 bp):
CTGATTTAGCTTCGGGCCATGATATCGG
Found at i:58211515 original size:21 final size:21
Alignment explanation
Indices: 58211489--58211529 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
58211479 TGTGTCCCCT
* *
58211489 GTTTTGAGAAATTTTTTTAAA
1 GTTTTGAGAAAGTTTCTTAAA
*
58211510 GTTTTGTGAAAGTTTCTTAA
1 GTTTTGAGAAAGTTTCTTAA
58211530 GTTATCAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.02, G:0.17, T:0.51
Consensus pattern (21 bp):
GTTTTGAGAAAGTTTCTTAAA
Found at i:58221100 original size:20 final size:20
Alignment explanation
Indices: 58221072--58221120 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
58221062 TATCGATCCA
* * *
58221072 GTATTGATACGTTTCTTAAG
1 GTATCGATACATTTCCTAAG
*
58221092 GTATCGATATATTTCCTAAG
1 GTATCGATACATTTCCTAAG
58221112 GTATCGATA
1 GTATCGATA
58221121 TTTTTACCCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (20 bp):
GTATCGATACATTTCCTAAG
Found at i:58221121 original size:20 final size:20
Alignment explanation
Indices: 58221083--58221121 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
58221073 TATTGATACG
*
58221083 TTTCTTAAGGTATCGATATA
1 TTTCCTAAGGTATCGATATA
58221103 TTTCCTAAGGTATCGATAT
1 TTTCCTAAGGTATCGATAT
58221122 TTTTACCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (20 bp):
TTTCCTAAGGTATCGATATA
Found at i:58226447 original size:48 final size:48
Alignment explanation
Indices: 58226289--58226519 Score: 176
Period size: 48 Copynumber: 4.9 Consensus size: 48
58226279 AGGGTATAAT
* * * *
58226289 GCCGATGCCATGTTCTAGACATGGTCTTACATTGGCTCATCCATCAA-GT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA--CAT-AATGTA
** * * **
58226338 --CGATGCCATGTCATAGACATGGTCTTACAAT-GACT-ATCAAAATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCA-CATAATGTA
* *
58226384 GGCCGACGCCATGTCCCAGACATGGTATTACACTAGCTCACAT-ATCCGT-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAAT--GTA
* *
58226433 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATGTA
* *
58226481 GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCACACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
58226520 AATAACCCGA
Statistics
Matches: 147, Mismatches: 23, Indels: 27
0.75 0.12 0.14
Matches are distributed among these distances:
44 2 0.01
45 2 0.01
46 18 0.12
47 45 0.31
48 46 0.31
49 32 0.22
50 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATGTA
Found at i:58228532 original size:51 final size:51
Alignment explanation
Indices: 58228464--58228727 Score: 267
Period size: 51 Copynumber: 5.3 Consensus size: 51
58228454 AGTGCTAGTG
* *
58228464 CACATATAGAACTTTACATAGTTAGTACGCACATACTTTGCATAAACAATT
1 CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
* * * * *
58228515 TACAGATAAAACTTTACATAATTAGTACGCACATACGTTGCATAAATAATT
1 CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
* **
58228566 -ACACATAGAACTTCACATAACCAGTACAG-ACATACTTTTG--T-----ATT
1 CACACATAGAACTTTACATAATTAGTAC-GCACATAC-TTTGCATAAACAATT
* * * * *
58228610 CACATATAGAACGTCACATAACTAGTACGCACATACTTTGCATAGACAATT
1 CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
* * * * *
58228661 CAAACATAGAACTTTACATAATCAGTACGCACATACTTTGTATAGACAGTT
1 CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
58228712 CACACATAGAACTTTA
1 CACACATAGAACTTTA
58228728 TGTAATCAGT
Statistics
Matches: 178, Mismatches: 24, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
44 8 0.04
45 30 0.17
46 1 0.01
49 1 0.01
50 28 0.16
51 110 0.62
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (51 bp):
CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
Found at i:58228701 original size:95 final size:95
Alignment explanation
Indices: 58228530--58228703 Score: 253
Period size: 95 Copynumber: 1.8 Consensus size: 95
58228520 ATAAAACTTT
* * *
58228530 ACATAATTAGTACGCACATACGTTGCATAAATAATTACACATAGAACTTCACATAACCAGTACAG
1 ACATAACTAGTACGCACATACGTTGCATAAACAATTAAACATAGAACTTCACATAACCAGTACAG
58228595 ACATACTTTTGTATTCACATATAGAACGTC
66 ACATACTTTTGTATTCACATATAGAACGTC
* * * *
58228625 ACATAACTAGTACGCACATACTTTGCATAGACAATTCAAACATAGAACTTTACATAATCAGTAC-
1 ACATAACTAGTACGCACATACGTTGCATAAACAATT-AAACATAGAACTTCACATAACCAGTACA
58228689 GCACATAC-TTTGTAT
65 G-ACATACTTTTGTAT
58228704 AGACAGTTCA
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
95 40 0.57
96 30 0.43
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (95 bp):
ACATAACTAGTACGCACATACGTTGCATAAACAATTAAACATAGAACTTCACATAACCAGTACAG
ACATACTTTTGTATTCACATATAGAACGTC
Found at i:58229996 original size:12 final size:12
Alignment explanation
Indices: 58229979--58230004 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
58229969 TCTTCCGAAA
58229979 GAATAATCTTTT
1 GAATAATCTTTT
58229991 GAATAATCTTTT
1 GAATAATCTTTT
58230003 GA
1 GA
58230005 TCTCATTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.46
Consensus pattern (12 bp):
GAATAATCTTTT
Found at i:58230117 original size:32 final size:32
Alignment explanation
Indices: 58230074--58230134 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
58230064 CAAATGGTAC
*
58230074 AACTTGAAAAGGTTATGTACACTTTGTGTGTA
1 AACTTGAAAAGGTTAGGTACACTTTGTGTGTA
* *
58230106 AACTTGGAAAGGTTAGGTATACTTTGTGT
1 AACTTGAAAAGGTTAGGTACACTTTGTGT
58230135 ATACCATATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.38
Consensus pattern (32 bp):
AACTTGAAAAGGTTAGGTACACTTTGTGTGTA
Found at i:58230162 original size:33 final size:34
Alignment explanation
Indices: 58230120--58230183 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 34
58230110 TGGAAAGGTT
58230120 AGGTATACTTTGTGTATACCATAT-GAAAGGGAA
1 AGGTATACTTTGTGTATACCATATGGAAAGGGAA
* *
58230153 AGGTATACTTTGTGTGTACCATTTGGAAAGG
1 AGGTATACTTTGTGTATACCATATGGAAAGG
58230184 AATGTACACC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 22 0.79
34 6 0.21
ACGTcount: A:0.31, C:0.09, G:0.27, T:0.33
Consensus pattern (34 bp):
AGGTATACTTTGTGTATACCATATGGAAAGGGAA
Found at i:58233471 original size:78 final size:79
Alignment explanation
Indices: 58233336--58233559 Score: 319
Period size: 78 Copynumber: 2.8 Consensus size: 79
58233326 TCGAATGATG
* * * *
58233336 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCATT
*
58233400 TGTGCGAGTTACTAAT
64 TGTGCGAGTTACTAAA
*
58233416 TCCGGGCTAAG-CCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
58233480 TGCGAGTTACTAAA
66 TGCGAGTTACTAAA
* *
58233494 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
58233558 TG
64 TG
58233560 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
77 1 0.01
78 54 0.41
79 25 0.19
80 49 0.37
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:58233573 original size:40 final size:40
Alignment explanation
Indices: 58233336--58233559 Score: 323
Period size: 40 Copynumber: 5.7 Consensus size: 40
58233326 TCGAATGATG
* *
58233336 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
58233376 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
58233416 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
58233454 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
58233494 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
58233535 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
58233560 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 9, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
38 26 0.15
39 19 0.11
40 114 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58241471 original size:40 final size:39
Alignment explanation
Indices: 58241394--58241616 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 39
58241384 TCGAATGATG
* *
58241394 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
58241433 TCCAGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
58241473 TCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
58241511 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
* *
58241551 TCCGGGTTAAGTCCCGAAGGCATTTGTGAGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
58241592 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
58241617 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
38 25 0.15
39 27 0.17
40 103 0.63
41 8 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58241544 original size:78 final size:78
Alignment explanation
Indices: 58241394--58241616 Score: 279
Period size: 78 Copynumber: 2.8 Consensus size: 78
58241384 TCGAATGATG
* * * * * *
58241394 TCCGGGCTAAGTCCGAAGGCTTTGTGCTAAGTGACTAAATCCAGACTAAGAT-CCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCATTT
* *
58241458 GTGTGAGTTACTAAT
64 GTGCGAGTTACTAAA
*
58241473 TCCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 TCCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
58241538 GCGAGTTACTAAA
66 GCGAGTTACTAAA
* * *
58241551 TCCGGGTTAAGTCCCGAAGGCATTTGTGAGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
58241615 TG
63 TG
58241617 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
77 1 0.01
78 52 0.41
79 35 0.28
80 37 0.29
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTAAA
Found at i:58246680 original size:20 final size:19
Alignment explanation
Indices: 58246655--58246704 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
58246645 AGAATGAAAT
*
58246655 AAATAACATAAAACAATTTA
1 AAATAA-ATAAAACAACTTA
*
58246675 AAATAAAATAAAGCAACTTA
1 AAAT-AAATAAAACAACTTA
58246695 AAATAAATAA
1 AAATAAATAA
58246705 TATATATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 6 0.22
20 19 0.70
21 2 0.07
ACGTcount: A:0.68, C:0.08, G:0.02, T:0.22
Consensus pattern (19 bp):
AAATAAATAAAACAACTTA
Found at i:58246716 original size:46 final size:45
Alignment explanation
Indices: 58246651--58246754 Score: 138
Period size: 46 Copynumber: 2.3 Consensus size: 45
58246641 CAAAAGAATG
* *
58246651 AAATAAATAACATAAAACAATTTAAAATAAAATAAAGCAACT-TA
1 AAATAAATAATATAAAACAATTTAAAATAAAATAAAGAAACTCTA
* * *
58246695 AAATAAATAATATATATAACAATTTAAAATAACATATAGAAAGTCTA
1 AAATAAATAATATA-A-AACAATTTAAAATAAAATAAAGAAACTCTA
58246742 AAATAAATAATAT
1 AAATAAATAATAT
58246755 GTAAAAAGAA
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
44 13 0.25
45 1 0.02
46 23 0.44
47 15 0.29
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (45 bp):
AAATAAATAATATAAAACAATTTAAAATAAAATAAAGAAACTCTA
Found at i:58246772 original size:28 final size:27
Alignment explanation
Indices: 58246740--58246897 Score: 137
Period size: 30 Copynumber: 5.7 Consensus size: 27
58246730 ATAGAAAGTC
*
58246740 TAAAATAAATAATATGTAAAAAGAAATT
1 TAAAATAAATAATATATAAAAA-AAATT
58246768 TAAAATAAATAATATACATAAAAAATAATT
1 TAAAATAAATAATAT--ATAAAAAA-AATT
*
58246798 TAATATAAATAATATATATAAAAAAA--
1 TAAAATAAATAATATATA-AAAAAAATT
*
58246824 TAAAATGAATAATATAT---AAAAATT
1 TAAAATAAATAATATATAAAAAAAATT
*
58246848 TGAAAATAAATAATCTATATAAAAAAGAGTT
1 T-AAAATAAATAA--TATATAAAAAA-AATT
* *
58246879 TAAAAATAAACAGTATATA
1 T-AAAATAAATAATATATA
58246898 TAAATTTATA
Statistics
Matches: 108, Mismatches: 9, Indels: 25
0.76 0.06 0.18
Matches are distributed among these distances:
22 5 0.05
24 1 0.01
25 10 0.09
26 15 0.14
27 5 0.05
28 20 0.19
29 12 0.11
30 27 0.25
31 13 0.12
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (27 bp):
TAAAATAAATAATATATAAAAAAAATT
Found at i:58246795 original size:16 final size:15
Alignment explanation
Indices: 58246774--58246822 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
58246764 AATTTAAAAT
58246774 AAATAATATACATAAA
1 AAATAATATA-ATAAA
* *
58246790 AAATAATTTAAT-AT
1 AAATAATATAATAAA
58246804 AAATAATATATATAAA
1 AAATAATATA-ATAAA
58246820 AAA
1 AAA
58246823 ATAAAATGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 10 0.37
15 4 0.15
16 13 0.48
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATAATATAATAAA
Found at i:58246803 original size:21 final size:20
Alignment explanation
Indices: 58246769--58246809 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
58246759 AAAGAAATTT
*
58246769 AAAATAAATAATATACATAA
1 AAAATAAATAATATAAATAA
*
58246789 AAAATAATTTAATATAAATAA
1 AAAATAA-ATAATATAAATAA
58246810 TATATATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAATAAATAATATAAATAA
Found at i:58246826 original size:51 final size:51
Alignment explanation
Indices: 58246769--58246873 Score: 126
Period size: 51 Copynumber: 2.1 Consensus size: 51
58246759 AAAGAAATTT
* *
58246769 AAAAT-AAAT-AATATACATA-AAAAATAATTTAATATAAATAATATATATAAA
1 AAAATAAAATGAATA-ACATATAAAAAT--TTGAAAATAAATAATATATATAAA
* *
58246820 AAAATAAAATGAATAATATATAAAAATTTGAAAATAAATAATCTATATAAA
1 AAAATAAAATGAATAACATATAAAAATTTGAAAATAAATAATATATATAAA
58246871 AAA
1 AAA
58246874 GAGTTTAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
51 29 0.62
52 8 0.17
53 10 0.21
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (51 bp):
AAAATAAAATGAATAACATATAAAAATTTGAAAATAAATAATATATATAAA
Found at i:58246838 original size:22 final size:23
Alignment explanation
Indices: 58246799--58246873 Score: 71
Period size: 24 Copynumber: 3.0 Consensus size: 23
58246789 AAAATAATTT
58246799 AATATAAATAATATATATAAAAA
1 AATATAAATAATATATATAAAAA
58246822 AATA-AAATGAATAATATATAAAAA
1 AATATAAAT-AAT-ATATATAAAAA
* *
58246846 TTTGAAAATAAATAATCTATATAAAAA
1 ----AATATAAATAATATATATAAAAA
58246873 A
1 A
58246874 GAGTTTAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 14
0.73 0.03 0.24
Matches are distributed among these distances:
22 4 0.09
23 8 0.19
24 11 0.26
27 10 0.23
28 6 0.14
29 4 0.09
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (23 bp):
AATATAAATAATATATATAAAAA
Found at i:58247003 original size:22 final size:22
Alignment explanation
Indices: 58246911--58247005 Score: 66
Period size: 23 Copynumber: 4.0 Consensus size: 22
58246901 ATTTATAATG
58246911 ATAAAACAATTCAAAAATAATAT
1 ATAAAACAATTC-AAAATAATAT
* *
58246934 ATAAAA-AGAGTTTAAAATAAATAA
1 ATAAAACA-A-TTCAAAAT-AATAT
* *
58246958 ATAAAGCAATGTAAAGTAATTAATAT
1 ATAAAACAAT-TCAA--AA-TAATAT
*
58246984 ATAAAATAATTCAAAATAATAT
1 ATAAAACAATTCAAAATAATAT
58247006 GTATTATAAC
Statistics
Matches: 56, Mismatches: 8, Indels: 17
0.69 0.10 0.21
Matches are distributed among these distances:
22 7 0.12
23 15 0.27
24 15 0.27
25 4 0.07
26 14 0.25
27 1 0.02
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.28
Consensus pattern (22 bp):
ATAAAACAATTCAAAATAATAT
Found at i:58247073 original size:26 final size:26
Alignment explanation
Indices: 58246926--58247065 Score: 96
Period size: 26 Copynumber: 5.5 Consensus size: 26
58246916 ACAATTCAAA
*
58246926 AATAATATATAAAAAGAGTTTAAAATA
1 AATAATATATAAAAA-AGTTTAAAATG
** * *
58246953 AATAA-ATA-AAGCAA-TGTAAAGT-
1 AATAATATATAAAAAAGTTTAAAATG
*
58246975 AATTAATATATAAAATAA-TTCAAAAT-
1 AA-TAATATATAAAA-AAGTTTAAAATG
* * *
58247001 AAT-ATGTATTATAACAGTTTAAAATG
1 AATAATATA-TAAAAAAGTTTAAAATG
* *
58247027 AATACTATATAAAAAAATTTAAAATG
1 AATAATATATAAAAAAGTTTAAAATG
58247053 AATAATATATAAA
1 AATAATATATAAA
58247066 TTAGTTTATA
Statistics
Matches: 86, Mismatches: 19, Indels: 17
0.70 0.16 0.14
Matches are distributed among these distances:
22 2 0.02
23 9 0.10
24 9 0.10
25 17 0.20
26 41 0.48
27 8 0.09
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.31
Consensus pattern (26 bp):
AATAATATATAAAAAAGTTTAAAATG
Found at i:58248933 original size:132 final size:131
Alignment explanation
Indices: 58248772--58249054 Score: 345
Period size: 132 Copynumber: 2.2 Consensus size: 131
58248762 ATATGTTCCT
* **
58248772 CTGTAACTTTAGGGAGAT-AGACTAATGGCTTCAATATGCTCCATTGCAACTTCAGGGAGACGCG
1 CTGTAACTTTAGGGAGATAAGACTAATGGCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAG
* * ** *
58248836 ATTTGTAACATCAACCTGCTCCACTGCAACTTT-AGGAAGATAAGGTTTATGGTTTTAATCTACT
66 ATTGGCAACATCAACAAGCTCCACTGCAACTTTAAGG-AGATAAGGTTTATGGTTGTAA-CTACT
*
58248900 CTA
129 CCA
* * * * * *
58248903 CTGTAACTTTAAGGAGATAAGATTAGTGGCTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAG
1 CTGTAACTTTAGGGAGATAAGACTAATGGCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAG
* * * *
58248968 ATTGGCCACTTGAACAAGCTCCACTGCAACTTTAAGGAGATAAGGTTTGTGGTTGTAACTACTCC
66 ATTGGCAACATCAACAAGCTCCACTGCAACTTTAAGGAGATAAGGTTTATGGTTGTAACTACTCC
58249033 A
131 A
* *
58249034 CTGCAACTTCAGGGAGATAAG
1 CTGTAACTTTAGGGAGATAAG
58249055 GTTTAACATG
Statistics
Matches: 128, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
131 42 0.33
132 83 0.65
133 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (131 bp):
CTGTAACTTTAGGGAGATAAGACTAATGGCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAG
ATTGGCAACATCAACAAGCTCCACTGCAACTTTAAGGAGATAAGGTTTATGGTTGTAACTACTCC
A
Found at i:58248940 original size:44 final size:43
Alignment explanation
Indices: 58248854--58249054 Score: 137
Period size: 44 Copynumber: 4.6 Consensus size: 43
58248844 CATCAACCTG
* * *
58248854 CTCCACTGCAACTTT-AGGAAGATAAGGTTTATGGTTTTAATCTA
1 CTCCACTGCAACTTTAAGG-AGATAA-GATTATGGCTTCAATCTA
* * *
58248898 CTCTACTGTAACTTTAAGGAGATAAGATTAGTGGCTTCAATCTG
1 CTCCACTGCAACTTTAAGGAGATAAGATTA-TGGCTTCAATCTA
* * *
58248942 CTCCACTGCAA-TTTCAGGGAGATAAGA-T-TGGCCACTTGAA-CAA
1 CTCCACTGCAACTTT-AAGGAGATAAGATTATGG---CTTCAATCTA
* * *
58248985 GCTCCACTGCAACTTTAAGGAGATAAGGTT-TGTGGTTGTAA-CTA
1 -CTCCACTGCAACTTTAAGGAGATAAGATTATG-GCTT-CAATCTA
* *
58249029 CTCCACTGCAACTTCAGGGAGATAAG
1 CTCCACTGCAACTTTAAGGAGATAAG
58249055 GTTTAACATG
Statistics
Matches: 127, Mismatches: 19, Indels: 23
0.75 0.11 0.14
Matches are distributed among these distances:
41 3 0.02
43 35 0.28
44 79 0.62
45 9 0.07
46 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (43 bp):
CTCCACTGCAACTTTAAGGAGATAAGATTATGGCTTCAATCTA
Found at i:58249351 original size:44 final size:44
Alignment explanation
Indices: 58249297--58249475 Score: 148
Period size: 44 Copynumber: 4.0 Consensus size: 44
58249287 GGTATAGGAT
* * * *
58249297 TTGTTACTTTAATCTACTCTACTGCAACTTCAGGGAAATAAGAC
1 TTGTAACTTTAATCTACTCCACTGCAACTCCAGGGAGATAAGAC
* * ** * **
58249341 TTGTAACTTTAA-CTTGCCCCCACTGCAACTTTAGGGGGATAAGGT
1 TTGTAACTTTAATC-T-ACTCCACTGCAACTCCAGGGAGATAAGAC
* * * *
58249386 TTGCTATCTTTGAGCTACTCCACTGCAACTCCAGAGAGATCAA-A-
1 TTG-TAACTTTAATCTACTCCACTGCAACTCCAGGGAGAT-AAGAC
*
58249430 TCTGTAACTTCAATCTACTCCACTGCAACTCCAGGGAGATAAGAC
1 T-TGTAACTTTAATCTACTCCACTGCAACTCCAGGGAGATAAGAC
58249475 T
1 T
58249476 CGTGGCTTCA
Statistics
Matches: 104, Mismatches: 23, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
43 3 0.03
44 45 0.43
45 45 0.43
46 10 0.10
47 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (44 bp):
TTGTAACTTTAATCTACTCCACTGCAACTCCAGGGAGATAAGAC
Found at i:58249455 original size:134 final size:131
Alignment explanation
Indices: 58249302--58249584 Score: 361
Period size: 134 Copynumber: 2.1 Consensus size: 131
58249292 AGGATTTGTT
* * * * * * *
58249302 ACTTTAATCTACTCTACTGCAACTTCAGGGAAATAAGACTTGTAACTTTAACTTGCCCCCACTGC
1 ACTTCAATCTACTCCACTGCAACTCCAGGGAAATAAGACTCGTAACTTCAACTTG-CCCCAATAC
* *
58249367 AACTTTAGGGGGATAAGGTTTGCTATCTTTGAGCTACTCCACTGCAACTCCAGAGAGATCAA-AT
65 AACTTTA-GGGGATAAGGTTTGCTATCTTCGAGC-ACTCCACTACAACTCCAGAGAGAT-AAGAT
58249431 CTGTA
127 CTGTA
* **
58249436 ACTTCAATCTACTCCACTGCAACTCCAGGGAGATAAGACTCGTGGCTTCAACTTGCCCCAATACA
1 ACTTCAATCTACTCCACTGCAACTCCAGGGAAATAAGACTCGTAACTTCAACTTGCCCCAATACA
* * * *
58249501 ACTTTAGGGGATAAGGTTTGCTATCTTCGATCACTCTACTACAACTCCAGGGAGATAAGATTTGT
66 ACTTTAGGGGATAAGGTTTGCTATCTTCGAGCACTCCACTACAACTCCAGAGAGATAAGATCTGT
58249566 A
131 A
* *
58249567 ACTCCAATCTATTCCACT
1 ACTTCAATCTACTCCACT
58249585 AAAACTTCTG
Statistics
Matches: 130, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
130 2 0.02
131 43 0.33
132 24 0.18
133 14 0.11
134 47 0.36
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (131 bp):
ACTTCAATCTACTCCACTGCAACTCCAGGGAAATAAGACTCGTAACTTCAACTTGCCCCAATACA
ACTTTAGGGGATAAGGTTTGCTATCTTCGAGCACTCCACTACAACTCCAGAGAGATAAGATCTGT
A
Found at i:58249583 original size:131 final size:133
Alignment explanation
Indices: 58249307--58249622 Score: 377
Period size: 131 Copynumber: 2.4 Consensus size: 133
58249297 TTGTTACTTT
* * * ** * * *
58249307 AATCTACTCTACTGCAACTTCAGGGAAATAAGACTTGTAACTTTAACTTGCCCCCACTGCAACTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGACTAGTGGCTTCAACTTG-CCCCAATACAACTT
* *
58249372 TAGGGGGATAAGGTTTGCTATCTTTGAGCTACTCCACTGCAACTCCAGAGAGATCAAATCTGTAA
65 TAGGGGGATAAGGTTTGCTATCTTCGAGCTACTCCACTACAACTCCAGAGAGATCAAATCTGTAA
*
58249437 CTTC
130 CTCC
* *
58249441 AATCTACTCCACTGCAACTCCAGGGAGATAAGACTCGTGGCTTCAACTTGCCCCAATACAACTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGACTAGTGGCTTCAACTTGCCCCAATACAACTTT
* * * *
58249506 A-GGGGATAAGGTTTGCTATCTTCGATC-ACTCTACTACAACTCCAGGGAGAT-AAGATTTGTAA
66 AGGGGGATAAGGTTTGCTATCTTCGAGCTACTCCACTACAACTCCAGAGAGATCAA-ATCTGTAA
58249568 CTCC
130 CTCC
* ** * * * *
58249572 AATCTATTCCACTAAAACTTCTGCGAGATAAGATTAGTGGCTTCAATTTGC
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGACTAGTGGCTTCAACTTGC
58249623 TTCACTGCAA
Statistics
Matches: 156, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
130 2 0.01
131 73 0.47
132 24 0.15
133 14 0.09
134 43 0.28
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (133 bp):
AATCTACTCCACTGCAACTTCAGGGAGATAAGACTAGTGGCTTCAACTTGCCCCAATACAACTTT
AGGGGGATAAGGTTTGCTATCTTCGAGCTACTCCACTACAACTCCAGAGAGATCAAATCTGTAAC
TCC
Found at i:58257816 original size:19 final size:19
Alignment explanation
Indices: 58257800--58257844 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
58257790 TTATGAAACT
58257800 TAATGCATATGATGAAATG
1 TAATGCATATGATGAAATG
*
58257819 TAATGCATATGAATAAAATG
1 TAATGCATATG-ATGAAATG
58257839 -AATGCA
1 TAATGCA
58257845 AAAAGAGGCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.47, C:0.07, G:0.18, T:0.29
Consensus pattern (19 bp):
TAATGCATATGATGAAATG
Found at i:58261588 original size:26 final size:25
Alignment explanation
Indices: 58261464--58261697 Score: 127
Period size: 26 Copynumber: 9.6 Consensus size: 25
58261454 CAAAAGAATG
* **
58261464 AAATAAATAACAT-AAAATGATTTA
1 AAATAAATAATATAAAAACAATTTA
* *
58261488 AAATAAAT-A-AT--AAGCAATTTT
1 AAATAAATAATATAAAAACAATTTA
*
58261509 AAATAAATAATACATAAAAAATAAGTTTA
1 AAATAAATAAT--AT-AAAAACAA-TTTA
** *
58261538 AAATAGGTATTATAAAAACAATTTA
1 AAATAAATAATATAAAAACAATTTA
*
58261563 AAATAATTAATATACAAAACAATTTA
1 AAATAAATAATATA-AAAACAATTTA
* *
58261589 AAAT--A-AA-AT-AAAGCAACTTA
1 AAATAAATAATATAAAAACAATTTA
*
58261609 AAATAAATAATATATATAACAATTTA
1 AAATAAATAATATA-AAAACAATTTA
* * * *
58261635 AAAT-AA-CATAT-AGAA-AGTCTA
1 AAATAAATAATATAAAAACAATTTA
*
58261656 AAATAAATAATATGTAAAAAGAAATTTA
1 AAATAAATAATA--TAAAAA-CAATTTA
58261684 AAATAAATAATATA
1 AAATAAATAATATA
58261698 CATAAAATAA
Statistics
Matches: 160, Mismatches: 28, Indels: 42
0.70 0.12 0.18
Matches are distributed among these distances:
20 13 0.08
21 22 0.14
22 11 0.07
23 8 0.05
24 14 0.09
25 20 0.12
26 39 0.24
27 2 0.01
28 20 0.12
29 11 0.07
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (25 bp):
AAATAAATAATATAAAAACAATTTA
Found at i:58261612 original size:46 final size:45
Alignment explanation
Indices: 58261560--58261690 Score: 145
Period size: 46 Copynumber: 2.8 Consensus size: 45
58261550 TAAAAACAAT
* *
58261560 TTAAAATAATTAATATACAAAACAATTTAAAATAAAATAAAGCAAC
1 TTAAAATAAATAATATA-AAAACAATTTAAAATAAAATAAAGAAAC
* * * *
58261606 TTAAAATAAATAATATATATAACAATTTAAAATAACATATAGAAAG
1 TTAAAATAAATAATATA-AAAACAATTTAAAATAAAATAAAGAAAC
*
58261652 TCTAAAATAAATAATATGTAAAAAGAAATTTAAAATAAA
1 T-TAAAATAAATAATA--TAAAAA-CAATTTAAAATAAA
58261691 TAATATACAT
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
46 40 0.56
47 14 0.20
48 3 0.04
49 14 0.20
ACGTcount: A:0.63, C:0.05, G:0.04, T:0.28
Consensus pattern (45 bp):
TTAAAATAAATAATATAAAAACAATTTAAAATAAAATAAAGAAAC
Found at i:58261742 original size:23 final size:24
Alignment explanation
Indices: 58261716--58261762 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
58261706 AAAAATAGTT
58261716 AAATATAAAT-AAT-ATATATAAAA
1 AAATA-AAATGAATAATATATAAAA
*
58261739 AAATAAAATGAATAATGTATAAAA
1 AAATAAAATGAATAATATATAAAA
58261763 GAGTTTAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 8 0.38
24 9 0.43
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (24 bp):
AAATAAAATGAATAATATATAAAA
Found at i:58261900 original size:27 final size:25
Alignment explanation
Indices: 58261870--58262012 Score: 96
Period size: 25 Copynumber: 5.6 Consensus size: 25
58261860 AACAATTCAA
58261870 AAATAATATATAAAAAGAGTTTAAAAT
1 AAATAATATATAAAAA-A-TTTAAAAT
** * *
58261897 AAATAA-ATA-AATCAATGTAAAGT
1 AAATAATATATAAAAAATTTAAAAT
* *
58261920 AATTAATATATAAAATAATTCAAAAT
1 AAATAATATATAAAA-AATTTAAAAT
* *
58261946 -AAT-ATGTATTAAAACAGTTTAAAAT
1 AAATAATATA-TAAAA-AATTTAAAAT
* *
58261971 GAATACTATATAAAAAAAATTTAAAAT
1 AAATA--ATATATAAAAAATTTAAAAT
*
58261998 GAATAATATATAAAA
1 AAATAATATATAAAA
58262013 TAGTTTATAA
Statistics
Matches: 89, Mismatches: 19, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
23 11 0.12
24 8 0.09
25 29 0.33
26 13 0.15
27 20 0.22
28 4 0.04
29 4 0.04
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.31
Consensus pattern (25 bp):
AAATAATATATAAAAAATTTAAAAT
Found at i:58261948 original size:22 final size:22
Alignment explanation
Indices: 58261850--58261950 Score: 64
Period size: 23 Copynumber: 4.3 Consensus size: 22
58261840 ATGTAAATTT
*
58261850 ATAATA-ATAAAACAATTCAAAA
1 ATAATATATAAAATAATTC-AAA
*
58261872 ATAATATATAAAA-AGAGTTTAAA
1 ATAATATATAAAATA-A-TTCAAA
* *
58261895 ATAA-ATAAATAAATCAATGTAAAGTA
1 ATAATATATA-AAAT-AAT-TCAA--A
58261921 ATTAATATATAAAATAATTCAAA
1 A-TAATATATAAAATAATTCAAA
58261944 ATAATAT
1 ATAATAT
58261951 GTATTAAAAC
Statistics
Matches: 63, Mismatches: 5, Indels: 22
0.70 0.06 0.24
Matches are distributed among these distances:
22 17 0.27
23 20 0.32
24 6 0.10
25 4 0.06
26 5 0.08
27 7 0.11
28 4 0.06
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (22 bp):
ATAATATATAAAATAATTCAAA
Found at i:58261948 original size:26 final size:26
Alignment explanation
Indices: 58261923--58262019 Score: 99
Period size: 27 Copynumber: 3.7 Consensus size: 26
58261913 GTAAAGTAAT
*
58261923 TAATATATAAAATAATTCAAAAT-AA
1 TAATATATAAAATAATTTAAAATGAA
* * *
58261948 T-ATGTATTAAAACAGTTTAAAATGAA
1 TAATATA-TAAAATAATTTAAAATGAA
* *
58261974 TACTATATAAAAAAAATTTAAAATGAA
1 TAATATAT-AAAATAATTTAAAATGAA
*
58262001 TAATATATAAAATAGTTTA
1 TAATATATAAAATAATTTA
58262020 TAAAAGCTGA
Statistics
Matches: 57, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
24 4 0.07
25 14 0.25
26 13 0.23
27 26 0.46
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (26 bp):
TAATATATAAAATAATTTAAAATGAA
Found at i:58262013 original size:16 final size:16
Alignment explanation
Indices: 58261965--58262013 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
58261955 TAAAACAGTT
*
58261965 TAAAATGAATACTATA
1 TAAAATGAATAATATA
58261981 TAAAA--AA-AAT-T-
1 TAAAATGAATAATATA
58261992 TAAAATGAATAATATA
1 TAAAATGAATAATATA
58262008 TAAAAT
1 TAAAAT
58262014 AGTTTATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
11 5 0.19
12 1 0.04
13 4 0.15
14 5 0.19
15 1 0.04
16 11 0.41
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (16 bp):
TAAAATGAATAATATA
Found at i:58263050 original size:15 final size:15
Alignment explanation
Indices: 58263021--58263069 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
58263011 ATTATTTTTT
58263021 TTGTCTTCTT--C-G
1 TTGTCTTCTTGCCTG
* *
58263033 TTGTTTTCTTGCGTG
1 TTGTCTTCTTGCCTG
*
58263048 TTGGCTTCTTGCCTG
1 TTGTCTTCTTGCCTG
58263063 TTGTCTT
1 TTGTCTT
58263070 TGTCTTGCAA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
12 9 0.32
15 19 0.68
ACGTcount: A:0.00, C:0.20, G:0.22, T:0.57
Consensus pattern (15 bp):
TTGTCTTCTTGCCTG
Found at i:58263544 original size:57 final size:57
Alignment explanation
Indices: 58263480--58263595 Score: 232
Period size: 57 Copynumber: 2.0 Consensus size: 57
58263470 ATAATTTTCT
58263480 TACCTTTTTACATTGAACAATGAAATGCTCACTATTAAATCACCCTTATGAATTAAG
1 TACCTTTTTACATTGAACAATGAAATGCTCACTATTAAATCACCCTTATGAATTAAG
58263537 TACCTTTTTACATTGAACAATGAAATGCTCACTATTAAATCACCCTTATGAATTAAG
1 TACCTTTTTACATTGAACAATGAAATGCTCACTATTAAATCACCCTTATGAATTAAG
58263594 TA
1 TA
58263596 AGTAAAACCA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (57 bp):
TACCTTTTTACATTGAACAATGAAATGCTCACTATTAAATCACCCTTATGAATTAAG
Found at i:58265069 original size:20 final size:21
Alignment explanation
Indices: 58265033--58265077 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
58265023 GAGTAGTATG
58265033 ATTTTACATGCATTTATAATT
1 ATTTTACATGCATTTATAATT
* *
58265054 ATTTTACCTG-ATTTATATTT
1 ATTTTACATGCATTTATAATT
58265074 ATTT
1 ATTT
58265078 AATATTTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.58
Consensus pattern (21 bp):
ATTTTACATGCATTTATAATT
Found at i:58272371 original size:43 final size:43
Alignment explanation
Indices: 58272310--58272397 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
58272300 CTAAGAAAGA
58272310 AGAAAAAGTAAAGAAATTCAACCAGAGATGCAGAAGCTTTATT
1 AGAAAAAGTAAAGAAATTCAACCAGAGATGCAGAAGCTTTATT
58272353 AGAAAAAGTAAAGAAATTCAACCAGAGATGCAGAAGCTTTATT
1 AGAAAAAGTAAAGAAATTCAACCAGAGATGCAGAAGCTTTATT
58272396 AG
1 AG
58272398 TTGATCTGTC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.49, C:0.11, G:0.19, T:0.20
Consensus pattern (43 bp):
AGAAAAAGTAAAGAAATTCAACCAGAGATGCAGAAGCTTTATT
Found at i:58276734 original size:17 final size:17
Alignment explanation
Indices: 58276714--58276747 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
58276704 CTTCATCTTC
58276714 TCCAAGCAGCCATCAAG
1 TCCAAGCAGCCATCAAG
58276731 TCCAAGCAGCCATCAAG
1 TCCAAGCAGCCATCAAG
58276748 AAATCACTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.35, G:0.18, T:0.12
Consensus pattern (17 bp):
TCCAAGCAGCCATCAAG
Found at i:58284994 original size:36 final size:34
Alignment explanation
Indices: 58284941--58285026 Score: 86
Period size: 35 Copynumber: 2.5 Consensus size: 34
58284931 CAATTTGCAT
**
58284941 CCAAAACATACTTAATTCACATAAC-AAATCTTATG
1 CCAAAACATACCAAATTCAC--AACTAAATCTTATG
*
58284976 CCAAAATCATACCAAATTCTCAACTAAATCTTATG
1 CCAAAA-CATACCAAATTCACAACTAAATCTTATG
* *
58285011 TC-AAACTTACCAAATT
1 CCAAAACATACCAAATT
58285027 GACCATTTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
33 10 0.23
34 6 0.14
35 17 0.39
36 11 0.25
ACGTcount: A:0.44, C:0.24, G:0.02, T:0.29
Consensus pattern (34 bp):
CCAAAACATACCAAATTCACAACTAAATCTTATG
Found at i:58285709 original size:43 final size:42
Alignment explanation
Indices: 58285657--58285761 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 42
58285647 CCAACATCCC
* *
58285657 AGACGTGGTCTTCCATGTAATCAAATATCGATG-CCATTGTCCA
1 AGACATGGTCTTACATGTAATCAAATA-CGATGTCCA-TGTCCA
* * * * *
58285700 AGACATGGTCGTACACGAAATCATATACGATGTCGATGTCCA
1 AGACATGGTCTTACATGTAATCAAATACGATGTCCATGTCCA
58285742 AGACATGGTCTTACATGTAA
1 AGACATGGTCTTACATGTAA
58285762 ATCTCAAGTC
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
42 28 0.55
43 23 0.45
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (42 bp):
AGACATGGTCTTACATGTAATCAAATACGATGTCCATGTCCA
Found at i:58295257 original size:21 final size:20
Alignment explanation
Indices: 58295230--58295287 Score: 73
Period size: 21 Copynumber: 2.9 Consensus size: 20
58295220 AAAATTTTTG
58295230 AGGGATTACAAAATATTCTA
1 AGGGATTACAAAATATTCTA
*
58295250 AGGGGATTCCAAAAT-TTCTA
1 A-GGGATTACAAAATATTCTA
*
58295270 AGGGAATACCAAAATATT
1 AGGGATTA-CAAAATATT
58295288 AAAGAAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 5 0.16
20 13 0.41
21 14 0.44
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (20 bp):
AGGGATTACAAAATATTCTA
Found at i:58295316 original size:20 final size:20
Alignment explanation
Indices: 58295238--58295317 Score: 72
Period size: 20 Copynumber: 4.0 Consensus size: 20
58295228 TGAGGGATTA
** *
58295238 CAAAATATTCTAAGGGGATTC
1 CAAAAT-TTCTAAGGAAATAC
*
58295259 CAAAATTTCTAAGGGAATAC
1 CAAAATTTCTAAGGAAATAC
* *
58295279 CAAAATATT-AAAGAAAATAC
1 CAAAAT-TTCTAAGGAAATAC
*
58295299 CAAAATTTCTGAGGAAATA
1 CAAAATTTCTAAGGAAATA
58295318 TCACATATTG
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
19 2 0.04
20 39 0.80
21 8 0.16
ACGTcount: A:0.49, C:0.12, G:0.14, T:0.25
Consensus pattern (20 bp):
CAAAATTTCTAAGGAAATAC
Found at i:58296792 original size:21 final size:21
Alignment explanation
Indices: 58296744--58296801 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
58296734 TGTGAAGAGG
* * * *
58296744 GGCACACGACCGTGTGGCTGA
1 GGCACATGGCCGTGTGACTAA
58296765 GGCACATGGCCGTGTGACTAA
1 GGCACATGGCCGTGTGACTAA
58296786 GGCACAT-GCCAGTGTG
1 GGCACATGGCC-GTGTG
58296802 GACCAGGGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 3 0.09
21 29 0.91
ACGTcount: A:0.21, C:0.26, G:0.36, T:0.17
Consensus pattern (21 bp):
GGCACATGGCCGTGTGACTAA
Found at i:58308439 original size:40 final size:39
Alignment explanation
Indices: 58308274--58308457 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
58308264 AAATTGAATG
* * *
58308274 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
58308314 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
58308354 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
58308394 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
58308433 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
58308458 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:58308482 original size:80 final size:81
Alignment explanation
Indices: 58308314--58308502 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
58308304 GCTGGAAATT
* * * *
58308314 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
58308379 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
58308395 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
58308458 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
58308474 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
58308503 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:58316559 original size:40 final size:39
Alignment explanation
Indices: 58316393--58316576 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
58316383 AAATTGAATG
* * *
58316393 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
58316433 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
58316473 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
58316513 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
58316552 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
58316577 CTTGGTGCGG
Statistics
Matches: 114, Mismatches: 25, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 105 0.92
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:58316601 original size:80 final size:80
Alignment explanation
Indices: 58316433--58316621 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
58316423 GCTGGAAATT
* * * *
58316433 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
**
58316498 TTCGTGCGAGTCATT
66 TTCGTGCGAGTCACC
* * * * *
58316513 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGG
* * * *
58316576 CCTTGGTGCGGGTTACC
64 CATTCGTGCGAGTCACC
* * *
58316593 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
58316622 ATCGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCACC
Found at i:58318191 original size:30 final size:30
Alignment explanation
Indices: 58318155--58318240 Score: 113
Period size: 30 Copynumber: 2.9 Consensus size: 30
58318145 CGGCCATGAT
58318155 ACACGGGCATGTGGCCTT-CCCATGTGCCTC
1 ACACGGGCATGTGG-CTTACCCATGTGCCTC
* *
58318185 ACACGGGCGTGTGGTTTACCCATGTGCCTC
1 ACACGGGCATGTGGCTTACCCATGTGCCTC
*
58318215 ACACGGGCGA-GTGGTTTACCCATGTG
1 ACACGGGC-ATGTGGCTTACCCATGTG
58318241 GAAGTGCCTA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
29 2 0.04
30 49 0.96
ACGTcount: A:0.15, C:0.30, G:0.30, T:0.24
Consensus pattern (30 bp):
ACACGGGCATGTGGCTTACCCATGTGCCTC
Found at i:58327751 original size:57 final size:58
Alignment explanation
Indices: 58327690--58327819 Score: 165
Period size: 57 Copynumber: 2.3 Consensus size: 58
58327680 ATTTAAGCCC
* * * *
58327690 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTA-ATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * **
58327747 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
58327805 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
58327820 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 36 0.57
58 27 0.43
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:58327776 original size:29 final size:29
Alignment explanation
Indices: 58327661--58327819 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
58327651 ACTCGATTTC
* * **
58327661 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
58327690 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
58327718 CGCACACCCAGTGCCGTA-ATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
58327747 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
58327776 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
58327805 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
58327820 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
28 22 0.20
29 88 0.80
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:58332344 original size:27 final size:28
Alignment explanation
Indices: 58332314--58332383 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
58332304 ATAGTGAATC
*
58332314 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
58332341 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
58332369 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58332384 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:58332455 original size:42 final size:42
Alignment explanation
Indices: 58332391--58332497 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
58332381 GCTGTACAAT
* *
58332391 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
58332433 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
58332475 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
58332498 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:58334333 original size:42 final size:42
Alignment explanation
Indices: 58334228--58334343 Score: 162
Period size: 43 Copynumber: 2.7 Consensus size: 42
58334218 ACCAATGCAT
*
58334228 TATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGCCAA
1 TATCCCAGATATGGTCTTACATG-AATCTCATATCGATGCCAA
* * *
58334271 TAGCCCAGCTATGGTCTTACACGAAGTCTCATATCGATGCC-A
1 TATCCCAGATATGGTCTTACATGAA-TCTCATATCGATGCCAA
58334313 TATCCCAGATATGGTCTTACATGAAATCTCA
1 TATCCCAGATATGGTCTTACATG-AATCTCA
58334344 ATAACCCTAA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 28 0.44
43 36 0.56
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
TATCCCAGATATGGTCTTACATGAATCTCATATCGATGCCAA
Found at i:58349380 original size:7 final size:7
Alignment explanation
Indices: 58349370--58349425 Score: 53
Period size: 7 Copynumber: 8.0 Consensus size: 7
58349360 TTGTGTTTGT
58349370 GGTTTAG
1 GGTTTAG
58349377 GGTTTAG
1 GGTTTAG
*
58349384 GATTTAG
1 GGTTTAG
*
58349391 GGTTCAG
1 GGTTTAG
*
58349398 GGTCTCA-
1 GGT-TTAG
58349405 GGTTTAG
1 GGTTTAG
58349412 GGTTTCA-
1 GGTTT-AG
58349419 GGTTTAG
1 GGTTTAG
58349426 AGTATAATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
6 3 0.07
7 34 0.83
8 4 0.10
ACGTcount: A:0.16, C:0.07, G:0.38, T:0.39
Consensus pattern (7 bp):
GGTTTAG
Found at i:58349394 original size:21 final size:20
Alignment explanation
Indices: 58349370--58349425 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
58349360 TTGTGTTTGT
58349370 GGTTTAGGGTTTAGGATTTAG
1 GGTTTAGGGTTTAGG-TTTAG
* *
58349391 GGTTCAGGGTCTCAGGTTTAG
1 GGTTTAGGGT-TTAGGTTTAG
58349412 GGTTTCA-GGTTTAG
1 GGTTT-AGGGTTTAG
58349426 AGTATAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 3 0.10
21 21 0.72
22 5 0.17
ACGTcount: A:0.16, C:0.07, G:0.38, T:0.39
Consensus pattern (20 bp):
GGTTTAGGGTTTAGGTTTAG
Found at i:58349470 original size:15 final size:15
Alignment explanation
Indices: 58349450--58349481 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
58349440 TTTAATTTAG
58349450 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
58349465 AAGATAAATATATAT
1 AAGATAAATATAAAT
58349480 AA
1 AA
58349482 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:58351487 original size:39 final size:39
Alignment explanation
Indices: 58351433--58351508 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
58351423 GATATGACTG
*
58351433 TCTTAAATTTGTTATTTTGCATGATTATTTGAGATCTGC
1 TCTTAAATTTGTTATTCTGCATGATTATTTGAGATCTGC
58351472 TCTTAAATTTGTTATTCTGCATGATTATTTGAGATCT
1 TCTTAAATTTGTTATTCTGCATGATTATTTGAGATCT
58351509 ACTTCTGTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.24, C:0.11, G:0.14, T:0.51
Consensus pattern (39 bp):
TCTTAAATTTGTTATTCTGCATGATTATTTGAGATCTGC
Done.