Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 211 of 427
Found at i:59421483 original size:40 final size:40
Alignment explanation
Indices: 59421375--59421484 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
59421365 ATTGAATGAT
* * * * *
59421375 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
59421415 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
59421455 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
59421485 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:59421499 original size:40 final size:39
Alignment explanation
Indices: 59421375--59421524 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
59421365 ATTGAATGAT
* * * * * * *
59421375 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
59421415 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
59421455 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
59421495 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
59421525 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:59424387 original size:30 final size:30
Alignment explanation
Indices: 59424332--59424491 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
59424322 ATAGTGAATC
59424332 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
59424361 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
59424391 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
59424420 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
59424448 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
59424478 CGCACACTTAGTGC
1 CGCACACTTAGTGC
59424492 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:59424424 original size:59 final size:57
Alignment explanation
Indices: 59424332--59424491 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
59424322 ATAGTGAATC
*
59424332 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
59424391 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
59424448 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
59424492 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:59432203 original size:30 final size:30
Alignment explanation
Indices: 59432140--59432297 Score: 204
Period size: 30 Copynumber: 5.5 Consensus size: 30
59432130 ATAGTGAATC
59432140 CGCACACTTAGTGCTATAT-A-TTTCAGC-
1 CGCACACTTAGTGCTATATAATTTTCAGCT
59432167 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
59432197 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
59432226 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
59432254 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
59432284 CGCACACTTAGTGC
1 CGCACACTTAGTGC
59432298 CAATCTTGTC
Statistics
Matches: 118, Mismatches: 5, Indels: 13
0.87 0.04 0.10
Matches are distributed among these distances:
27 21 0.18
28 23 0.19
29 36 0.31
30 37 0.31
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:59432213 original size:57 final size:57
Alignment explanation
Indices: 59432140--59432297 Score: 205
Period size: 57 Copynumber: 2.8 Consensus size: 57
59432130 ATAGTGAATC
*
59432140 CGCACACTTAGTGCTATATA-TTTCAGC-CGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
59432197 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
59432254 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
59432298 CAATCTTGTC
Statistics
Matches: 91, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
56 2 0.02
57 40 0.44
58 28 0.31
59 21 0.23
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:59432219 original size:29 final size:29
Alignment explanation
Indices: 59432140--59432297 Score: 198
Period size: 29 Copynumber: 5.5 Consensus size: 29
59432130 ATAGTGAATC
59432140 CGCACACTTAGTGCTATATA-TTTCAGC-
1 CGCACACTTAGTGCTATATATTTTCAGCT
59432167 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
59432197 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* *
59432226 CGCACACTTAGTGCTATATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AGCT
* * * * *
59432254 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAGCT
59432284 CGCACACTTAGTGC
1 CGCACACTTAGTGC
59432298 CAATCTTGTC
Statistics
Matches: 117, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
27 21 0.18
28 21 0.18
29 38 0.32
30 36 0.31
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:59439651 original size:30 final size:30
Alignment explanation
Indices: 59439596--59439755 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
59439586 ATAGTGAATC
59439596 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
59439625 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
59439655 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
59439684 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
59439712 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
59439742 CGCACACTTAGTGC
1 CGCACACTTAGTGC
59439756 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:59439688 original size:59 final size:57
Alignment explanation
Indices: 59439596--59439755 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
59439586 ATAGTGAATC
*
59439596 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
59439655 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
59439712 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
59439756 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:59447460 original size:30 final size:30
Alignment explanation
Indices: 59447405--59447564 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
59447395 ATGGTGAATC
59447405 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
59447434 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
59447464 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
59447493 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
59447521 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
59447551 CGCACACTTAGTGC
1 CGCACACTTAGTGC
59447565 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:59447497 original size:59 final size:57
Alignment explanation
Indices: 59447405--59447564 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
59447395 ATGGTGAATC
*
59447405 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
59447464 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
59447521 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
59447565 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:59450387 original size:6 final size:6
Alignment explanation
Indices: 59450373--59450442 Score: 68
Period size: 6 Copynumber: 11.7 Consensus size: 6
59450363 TCATTCTAGT
* * * * * *
59450373 AGAGGG AGAGAG AGAGAG GGAGAG GGAGAG GGAGAG GGAGAG GGAGAG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* *
59450421 AGAGAA AGAAAG AGAGAG AGAG
1 AGAGAG AGAGAG AGAGAG AGAG
59450443 TGTGTGAGTG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 57 1.00
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (6 bp):
AGAGAG
Found at i:59450407 original size:18 final size:18
Alignment explanation
Indices: 59450373--59450425 Score: 79
Period size: 18 Copynumber: 2.8 Consensus size: 18
59450363 TCATTCTAGT
59450373 AGAGGGAGAGAGAGAGAGGG
1 AGAGGGAGAG-G-GAGAGGG
59450393 AGAGGGAGAGGGAGAGGG
1 AGAGGGAGAGGGAGAGGG
*
59450411 AGAGGGAGAGAGAGA
1 AGAGGGAGAGGGAGA
59450426 AAGAAAGAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 21 0.66
19 1 0.03
20 10 0.31
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (18 bp):
AGAGGGAGAGGGAGAGGG
Found at i:59451103 original size:19 final size:19
Alignment explanation
Indices: 59451067--59451104 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
59451057 TAAAAATATT
*
59451067 TTTATATTATTTTCATTAA
1 TTTATATTATTATCATTAA
59451086 TTTATATATATTAT-ATTAA
1 TTTATAT-TATTATCATTAA
59451105 AATGTTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTATATTATTATCATTAA
Found at i:59451337 original size:27 final size:27
Alignment explanation
Indices: 59451293--59451359 Score: 116
Period size: 27 Copynumber: 2.4 Consensus size: 27
59451283 CTGATTTTCG
59451293 ATAGTTTGGTTTTTCGCTTACCCTGCCGT
1 ATAG-TTGG-TTTTCGCTTACCCTGCCGT
59451322 ATAGTTGGTTTTCGCTTACCCTGCCGT
1 ATAGTTGGTTTTCGCTTACCCTGCCGT
59451349 ATAGTTGGTTT
1 ATAGTTGGTTT
59451360 GTATGGATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 30 0.79
28 4 0.11
29 4 0.11
ACGTcount: A:0.12, C:0.21, G:0.22, T:0.45
Consensus pattern (27 bp):
ATAGTTGGTTTTCGCTTACCCTGCCGT
Found at i:59453813 original size:18 final size:18
Alignment explanation
Indices: 59453790--59453824 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
59453780 CAAATATTCT
59453790 TTAAAAATTAAAAAAATC
1 TTAAAAATTAAAAAAATC
* *
59453808 TTAAAATTTAAATAAAT
1 TTAAAAATTAAAAAAAT
59453825 TTTTATGATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
TTAAAAATTAAAAAAATC
Found at i:59453967 original size:21 final size:21
Alignment explanation
Indices: 59453928--59453967 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
59453918 TCCTGAATTT
*
59453928 TTTAAATAATTATAGAAAATA
1 TTTAAATAATTATAAAAAATA
59453949 TTTAAA-AATTATCAAAAAA
1 TTTAAATAATTAT-AAAAAA
59453968 ATTATTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (21 bp):
TTTAAATAATTATAAAAAATA
Found at i:59454097 original size:21 final size:21
Alignment explanation
Indices: 59454056--59454100 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
59454046 TGATTTCTTA
*
59454056 AAATAATTATTAAATACTATT
1 AAATAATTATTAAAAACTATT
*
59454077 AAATAATTA-TAGAAAATTATT
1 AAATAATTATTA-AAAACTATT
59454098 AAA
1 AAA
59454101 AAATATTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
AAATAATTATTAAAAACTATT
Found at i:59454206 original size:21 final size:21
Alignment explanation
Indices: 59454163--59454202 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
59454153 TTGTTGTATA
*
59454163 TATTAATGAATTATAAACAAT
1 TATTAATGAATTATAAAAAAT
59454184 TATTAA-GAATTATAAAAAA
1 TATTAATGAATTATAAAAAA
59454203 ATTAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (21 bp):
TATTAATGAATTATAAAAAAT
Found at i:59454432 original size:12 final size:12
Alignment explanation
Indices: 59454413--59454463 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
59454403 TATATATATA
59454413 TATATATTATTT
1 TATATATTATTT
59454425 TATATATTATTT
1 TATATATTATTT
* *
59454437 TAT-TTTTATCT
1 TATATATTATTT
*
59454448 T-CATATTATTT
1 TATATATTATTT
59454459 TATAT
1 TATAT
59454464 TATCATATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
11 14 0.45
12 17 0.55
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (12 bp):
TATATATTATTT
Found at i:59454443 original size:18 final size:18
Alignment explanation
Indices: 59454382--59454473 Score: 75
Period size: 18 Copynumber: 5.1 Consensus size: 18
59454372 TCATTTTCCA
* *
59454382 ATTATGTTATTTATATAT
1 ATTATTTTATATATATAT
*
59454400 ATGTA-TATATATATATAT
1 AT-TATTTTATATATATAT
59454418 ATTATTTTATATAT-TAT
1 ATTATTTTATATATATAT
* *
59454435 TTTATTTT-TATCT-TCAT
1 ATTATTTTATATATAT-AT
59454452 ATTATTTTATATTATCATAT
1 ATTATTTTATA-TAT-ATAT
59454472 AT
1 AT
59454474 ATATATATTA
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
16 5 0.08
17 21 0.36
18 24 0.41
19 4 0.07
20 4 0.07
21 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (18 bp):
ATTATTTTATATATATAT
Found at i:59454480 original size:18 final size:17
Alignment explanation
Indices: 59454459--59454498 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
59454449 CATATTATTT
59454459 TATATTATCATATA-TATA
1 TATATTATC-TATAGTA-A
59454477 TATATTATCTATAGTAA
1 TATATTATCTATAGTAA
59454494 TATAT
1 TATAT
59454499 AGACTCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (17 bp):
TATATTATCTATAGTAA
Found at i:59454857 original size:2 final size:2
Alignment explanation
Indices: 59454850--59454878 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
59454840 ACATATTTTA
59454850 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
59454879 ATACTATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:59457915 original size:17 final size:16
Alignment explanation
Indices: 59457895--59457939 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 16
59457885 TCTCTCCTGG
59457895 TTCTTTTTTTTCCTTTT
1 TTCTTTTTTTT-CTTTT
*
59457912 TTCTTTTCTTTCTTTT
1 TTCTTTTTTTTCTTTT
59457928 TCTACTTTTTTT
1 T-T-CTTTTTTT
59457940 CATACTTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.25
17 11 0.46
18 7 0.29
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (16 bp):
TTCTTTTTTTTCTTTT
Found at i:59457945 original size:12 final size:12
Alignment explanation
Indices: 59457921--59457954 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
59457911 TTTCTTTTCT
59457921 TTCTTTTTCTAC
1 TTCTTTTTCTAC
59457933 TT-TTTTTCATAC
1 TTCTTTTTC-TAC
59457945 TTCTTTTTCT
1 TTCTTTTTCT
59457955 TTCTCTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.71
Consensus pattern (12 bp):
TTCTTTTTCTAC
Found at i:59460223 original size:27 final size:28
Alignment explanation
Indices: 59460167--59460236 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
59460157 AAACTTGTAC
59460167 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
59460195 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
59460222 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
59460237 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:59460247 original size:27 final size:27
Alignment explanation
Indices: 59460167--59460248 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
59460157 AAACTTGTAC
* *
59460167 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
59460195 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
59460222 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
59460249 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:59462167 original size:40 final size:39
Alignment explanation
Indices: 59462122--59462329 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 39
59462112 CGGAATACAA
*
59462122 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
59462162 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
59462202 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
59462242 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
59462282 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
59462322 CCGGATAT
1 CCGGATAT
59462330 CATTCAATTG
Statistics
Matches: 144, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 1 0.01
40 143 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:59462262 original size:80 final size:80
Alignment explanation
Indices: 59462122--59462329 Score: 256
Period size: 80 Copynumber: 2.6 Consensus size: 80
59462112 CGGAATACAA
* * *
59462122 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
59462187 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
59462202 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
59462266 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
59462282 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
59462330 CATTCAATTG
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:59470177 original size:40 final size:39
Alignment explanation
Indices: 59470132--59470339 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
59470122 CGGAATACAA
*
59470132 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
59470172 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
59470212 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
59470252 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
59470292 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
59470332 CCGGATAT
1 CCGGATAT
59470340 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:59470272 original size:80 final size:81
Alignment explanation
Indices: 59470132--59470337 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
59470122 CGGAATACAA
* * *
59470132 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
59470196 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
59470212 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
59470275 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
59470292 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
59470338 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:59476843 original size:26 final size:26
Alignment explanation
Indices: 59476807--59476859 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
59476797 CTAAAAAAGT
59476807 TACTACGTAAGAACACACCGTTTGTG
1 TACTACGTAAGAACACACCGTTTGTG
*
59476833 TACTGCGTAAGAACACACCGTTTGTG
1 TACTACGTAAGAACACACCGTTTGTG
59476859 T
1 T
59476860 CGTCTGAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
TACTACGTAAGAACACACCGTTTGTG
Found at i:59483379 original size:27 final size:27
Alignment explanation
Indices: 59483349--59483545 Score: 256
Period size: 27 Copynumber: 7.3 Consensus size: 27
59483339 TACTGAAATG
*
59483349 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
59483376 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
59483403 CCCTCGATTTATAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
59483430 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* **
59483457 CCCTCGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
59483484 CCCTGGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
59483511 CCCTC-AGTTTGA-A-AATTACCATTTTA
1 CCCTCGA-TTT-ATAGAATTACCATTTTA
59483537 CCCTCGATT
1 CCCTCGATT
59483546 GTGAAATTAC
Statistics
Matches: 152, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
26 21 0.14
27 130 0.86
28 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:59483473 original size:81 final size:81
Alignment explanation
Indices: 59483349--59483545 Score: 292
Period size: 81 Copynumber: 2.4 Consensus size: 81
59483339 TACTGAAATG
* *
59483349 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
* *
59483414 TAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
* * *
59483430 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTGGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
59483495 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
59483511 CCCTC-AGTTTGA-A-AATTACCATTTTACCCTCGATT
1 CCCTCGA-TTT-ATAGAATTACCATTTTACCCTCGATT
59483546 GTGAAATTAC
Statistics
Matches: 107, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
80 23 0.21
81 83 0.78
82 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:59483660 original size:53 final size:53
Alignment explanation
Indices: 59483579--59483696 Score: 157
Period size: 53 Copynumber: 2.2 Consensus size: 53
59483569 AGGATATAAT
*
59483579 TACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCT-AGTTTGCAAAAG
1 TACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGCAAAAG
* * ** * *
59483631 TACCGAAATACCACTAGTTTGTGAAATTACTGAAATACCCTCAATTTGTAAAAT
1 TACCAAAATACC-CTAGTTTGTAAAATTACCAAAATACCCTCAATTTGCAAAAG
59483685 TACCAAAATACC
1 TACCAAAATACC
59483697 TCTGATTTAC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
52 11 0.20
53 25 0.45
54 20 0.36
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (53 bp):
TACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGCAAAAG
Found at i:59483713 original size:54 final size:53
Alignment explanation
Indices: 59483549--59483781 Score: 170
Period size: 54 Copynumber: 4.3 Consensus size: 53
59483539 CTCGATTGTG
* ** * **
59483549 AAATTACTGAAATACCCT-GTAGGATATAATTACCAAAATACC-CTAGTTTGTA
1 AAATTACTGAAATACCCTAATTTG-TAAAATTACCAAAATACCTCTAGTTTACA
** * * * * * ***
59483601 AAATTACCAAAATACCCTAGTTTGCAAAAGTACCGAAATACCACTAGTTTGTG
1 AAATTACTGAAATACCCTAATTTGTAAAATTACCAAAATACCTCTAGTTTACA
59483654 AAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCTCT-GATTTACA
1 AAATTACTGAAATACCCT-AATTTGTAAAATTACCAAAATACCTCTAG-TTTACA
* * * * *
59483708 AAATTACAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCAT-TGGTTTACA
1 AAATTACTGAAATACCC-T-AATTTGT-AAAATTACCA-AAATACC-TCTAGTTTACA
59483764 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
59483782 TGGTTTGTAG
Statistics
Matches: 147, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
52 30 0.20
53 29 0.20
54 41 0.28
55 8 0.05
56 37 0.25
57 2 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (53 bp):
AAATTACTGAAATACCCTAATTTGTAAAATTACCAAAATACCTCTAGTTTACA
Found at i:59483714 original size:27 final size:26
Alignment explanation
Indices: 59483509--59483696 Score: 164
Period size: 26 Copynumber: 7.2 Consensus size: 26
59483499 ATTACCATTT
***
59483509 TACCCTCAGTTTG-AAAATTACCATTT
1 TACCCT-AGTTTGTAAAATTACCAAAA
* * * **
59483535 TACCCTCGATTGTGAAATTACTGAAA
1 TACCCTAGTTTGTAAAATTACCAAAA
** *
59483561 TACCCT-GTAGGATATAATTACCAAAA
1 TACCCTAGTTTG-TAAAATTACCAAAA
59483587 TACCCTAGTTTGTAAAATTACCAAAA
1 TACCCTAGTTTGTAAAATTACCAAAA
* * *
59483613 TACCCTAGTTTGCAAAAGTACCGAAA
1 TACCCTAGTTTGTAAAATTACCAAAA
* **
59483639 TACCACTAGTTTGTGAAATTACTGAAA
1 TACC-CTAGTTTGTAAAATTACCAAAA
*
59483666 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCT-AGTTTGTAAAATTACCAAAA
59483693 TACC
1 TACC
59483697 TCTGATTTAC
Statistics
Matches: 128, Mismatches: 29, Indels: 9
0.77 0.17 0.05
Matches are distributed among these distances:
25 6 0.05
26 77 0.60
27 45 0.35
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (26 bp):
TACCCTAGTTTGTAAAATTACCAAAA
Found at i:59483787 original size:27 final size:27
Alignment explanation
Indices: 59483654--59483783 Score: 113
Period size: 27 Copynumber: 4.7 Consensus size: 27
59483644 CTAGTTTGTG
** **
59483654 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTTGATTTACA
**
59483681 AAATTACCAAAATA-CCTCTGATTTACA
1 AAATTACTGAAATACCCT-TGATTTACA
*
59483708 AAATTACAGAAATACCCTTGACTTT-CTAA
1 AAATTACTGAAATACCCTTGA-TTTAC--A
* *
59483737 AAATTA-TAGAAATACCATTGGTTTACA
1 AAATTACT-GAAATACCCTTGATTTACA
59483764 AAATTACTGAAATACCCTTG
1 AAATTACTGAAATACCCTTG
59483784 GTTTGTAGAT
Statistics
Matches: 83, Mismatches: 12, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
26 3 0.04
27 51 0.61
28 10 0.12
29 19 0.23
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTTGATTTACA
Found at i:59483913 original size:25 final size:25
Alignment explanation
Indices: 59483860--59483907 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
59483850 ACCGTAAAGC
*
59483860 CCCTGTAGGGTAAAGTGACGTAATA
1 CCCTGTAGGGTAAAATGACGTAATA
59483885 CCCTGTA-GGTAAAATGACG-AATA
1 CCCTGTAGGGTAAAATGACGTAATA
59483908 TGCCCTTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.18
24 11 0.50
25 7 0.32
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (25 bp):
CCCTGTAGGGTAAAATGACGTAATA
Found at i:59484750 original size:24 final size:24
Alignment explanation
Indices: 59484705--59484773 Score: 95
Period size: 24 Copynumber: 2.8 Consensus size: 24
59484695 AGGAAGTGCT
*
59484705 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
59484729 GAAAAGGGCTTTG-CCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
59484753 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
59484774 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.03
24 21 0.52
25 18 0.45
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:59484786 original size:24 final size:24
Alignment explanation
Indices: 59484704--59484786 Score: 89
Period size: 24 Copynumber: 3.4 Consensus size: 24
59484694 GAGGAAGTGC
* *
59484704 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
59484729 GAAAAGGGCTTTG-CCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
59484752 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
59484776 TAAAAGAGGCT
1 TAAAAG-GGCT
59484787 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
23 5 0.10
24 29 0.58
25 16 0.32
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:59484980 original size:42 final size:42
Alignment explanation
Indices: 59484921--59485094 Score: 339
Period size: 42 Copynumber: 4.1 Consensus size: 42
59484911 TAGTCTCCCC
59484921 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
59484963 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
59485005 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
59485047 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
59485089 AAATGG
1 AAATGG
59485095 CCTAAGGCCA
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 131 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:59485154 original size:31 final size:31
Alignment explanation
Indices: 59485116--59485198 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
59485106 AGTTTACAGT
59485116 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
59485147 AAAGGCTTC-GCCTAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
59485177 AAAGGCTTCGACCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
59485199 TCAAGACTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
30 33 0.70
31 14 0.30
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:59487458 original size:27 final size:27
Alignment explanation
Indices: 59487428--59487625 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
59487418 TATTGAAATG
* *
59487428 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
59487455 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
59487482 CCCTCGATTTAAAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
59487509 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
59487536 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * *
59487563 CCCTGGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
59487590 CCCTC-AGTTTAAAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
59487617 CCCTCGATT
1 CCCTCGATT
59487626 ATGAAATTAT
Statistics
Matches: 152, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 150 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:59487552 original size:81 final size:81
Alignment explanation
Indices: 59487428--59487625 Score: 299
Period size: 81 Copynumber: 2.4 Consensus size: 81
59487418 TATTGAAATG
* *
59487428 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
*
59487493 AAAAATTACCGTTTTA
66 AAAAATTACCATTTTA
* *
59487509 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTGGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
*
59487574 CAAAATTACCATTTTA
66 AAAAATTACCATTTTA
* * *
59487590 CCCTC-AGTTTAAAAAATTACCGTTTTACCCTCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
59487626 ATGAAATTAT
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 106 0.99
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
AAAAATTACCATTTTA
Found at i:59487720 original size:25 final size:26
Alignment explanation
Indices: 59487657--59487775 Score: 127
Period size: 26 Copynumber: 4.6 Consensus size: 26
59487647 TGTAGGATAG
*
59487657 AATTACCAAAATGCCCCTAATTTGTAA
1 AATTACCAAAAT-ACCCTAATTTGTAA
* *
59487684 AATTATCAAAATACCCTAGTTTG-AA
1 AATTACCAAAATACCCTAATTTGTAA
*
59487709 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCT-AATTTGTAA
* **
59487736 AATTACC-AAATACCCTGATTTACAA
1 AATTACCAAAATACCCTAATTTGTAA
59487761 AATTA-CAGAAATACC
1 AATTACCA-AAATACC
59487776 GTCGACTTTC
Statistics
Matches: 79, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
24 1 0.01
25 28 0.35
26 30 0.38
27 20 0.25
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCTAATTTGTAA
Found at i:59487731 original size:52 final size:53
Alignment explanation
Indices: 59487657--59487833 Score: 166
Period size: 52 Copynumber: 3.3 Consensus size: 53
59487647 TGTAGGATAG
* * * *
59487657 AATTACCAAAATGCCC-CTAATTTGTAAAATTATCAAAATACCCTAGTTT-GAA
1 AATTACCGAAATACCCTCGAATTTGTAAAATTATCAAAATACCCT-GTTTACAA
*
59487709 AATTACCGAAATACCCTC-AATTTGTAAAATTA-CCAAATACCCTGATTTACAA
1 AATTACCGAAATACCCTCGAATTTGTAAAATTATCAAAATACCCTG-TTTACAA
* * * * *
59487761 AATTACAGAAATACCGTCGACTTTCTAAAAATTAT-AGAAATACCATTGGTTTACAA
1 AATTACCGAAATACCCTCGAATTTGT-AAAATTATCA-AAATACC-CT-GTTTACAA
*
59487817 AATTACTGAAATACCCT
1 AATTACCGAAATACCCT
59487834 TGGTTTTTAG
Statistics
Matches: 104, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
50 1 0.01
51 13 0.12
52 46 0.44
53 6 0.06
54 7 0.07
55 7 0.07
56 23 0.22
57 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (53 bp):
AATTACCGAAATACCCTCGAATTTGTAAAATTATCAAAATACCCTGTTTACAA
Found at i:59487746 original size:26 final size:27
Alignment explanation
Indices: 59487657--59487751 Score: 117
Period size: 27 Copynumber: 3.6 Consensus size: 27
59487647 TGTAGGATAG
*
59487657 AATTACCAAAATGCCC-CTAATTTGTAA
1 AATTACCAAAATACCCTC-AATTTGTAA
* *
59487684 AATTATCAAAATACCCT-AGTTTG-AA
1 AATTACCAAAATACCCTCAATTTGTAA
*
59487709 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTCAATTTGTAA
59487736 AATTACC-AAATACCCT
1 AATTACCAAAATACCCT
59487752 GATTTACAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
25 17 0.29
26 19 0.32
27 23 0.39
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTGTAA
Found at i:59487772 original size:26 final size:25
Alignment explanation
Indices: 59487682--59487833 Score: 94
Period size: 25 Copynumber: 5.8 Consensus size: 25
59487672 CCTAATTTGT
*
59487682 AAAATTATCA-AAATACCCT-AGTTTG
1 AAAATTA-CAGAAATACCCTGA-TTTC
* * *
59487707 AAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACAGAAATACCCT-GATTT-C
*
59487734 AAAATTAC-CAAATACCCTGATTTAC
1 AAAATTACAGAAATACCCTGATTT-C
*
59487759 AAAATTACAGAAATACCGTCGACTTTC
1 AAAATTACAGAAATACCCT-GA-TTTC
* * *
59487786 TAAAAATTATAGAAATACCATTGGTTTAC
1 --AAAATTACAGAAATACC-CTGATTT-C
*
59487815 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
59487834 TGGTTTTTAG
Statistics
Matches: 102, Mismatches: 14, Indels: 21
0.74 0.10 0.15
Matches are distributed among these distances:
24 1 0.01
25 28 0.27
26 21 0.21
27 27 0.26
28 6 0.06
29 18 0.18
30 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (25 bp):
AAAATTACAGAAATACCCTGATTTC
Found at i:59487827 original size:27 final size:27
Alignment explanation
Indices: 59487788--59487839 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
59487778 CGACTTTCTA
59487788 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
59487815 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
59487840 TTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:59487955 original size:26 final size:25
Alignment explanation
Indices: 59487880--59487955 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 25
59487870 AAATGACTAA
*
59487880 AATACCCCTAATAGGTAAAAAGACCGT
1 AATACCCCT--TAGGTAAAATGACCGT
*
59487907 AA-AGCCCCTTAGGGTAAAGTGACCGT
1 AATA-CCCCTTA-GGTAAAATGACCGT
59487933 AATACCCCTGTAGGTAAAATGAC
1 AATACCCCT-TAGGTAAAATGAC
59487956 GAATATGCCC
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
25 2 0.05
26 30 0.71
27 10 0.24
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (25 bp):
AATACCCCTTAGGTAAAATGACCGT
Found at i:59488802 original size:25 final size:24
Alignment explanation
Indices: 59488764--59488833 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
59488754 AGGAAGTGCT
* *
59488764 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCTAGTTTACC
*
59488788 GAAAAGGGCTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTGCCCTAGTTTACC
59488813 AGAAAGGGCTTTGCCCTAGTT
1 A-AAAGGGCTTTGCCCTAGTT
59488834 GTTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCTAGTTTACC
Found at i:59489018 original size:42 final size:42
Alignment explanation
Indices: 59488959--59489092 Score: 232
Period size: 42 Copynumber: 3.2 Consensus size: 42
59488949 GAGTCTCCCC
*
59488959 AAATGGGCTTGCATACATTCATTGACATTACATGTGATACTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
59489001 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
** *
59489043 AAATGGGCTTTTATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
59489085 AAATGGGC
1 AAATGGGC
59489093 CTAAGGGCCA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:59489152 original size:31 final size:31
Alignment explanation
Indices: 59489116--59489230 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
59489106 CGTTTAGAGT
*
59489116 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
59489147 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
59489178 AAAGGCTTCGGCCTAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
59489209 AAAGGCTTCCGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
59489231 TTAAGACTAA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 5 0.06
31 72 0.94
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:59493283 original size:13 final size:13
Alignment explanation
Indices: 59493242--59493292 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
59493232 TAGAAATCAC
*
59493242 ATATACAGATACAG
1 ATATACAGA-ATAG
*
59493256 ATA-ACAAAATCAG
1 ATATACAGAAT-AG
*
59493269 ATATGCAGAATAG
1 ATATACAGAATAG
59493282 ATATACAGAAT
1 ATATACAGAAT
59493293 CCTACCCCCA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
12 1 0.03
13 21 0.70
14 8 0.27
ACGTcount: A:0.53, C:0.12, G:0.14, T:0.22
Consensus pattern (13 bp):
ATATACAGAATAG
Found at i:59494874 original size:12 final size:12
Alignment explanation
Indices: 59494853--59494884 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
59494843 GAGAACCTTG
59494853 TATATATGCTTA
1 TATATATGCTTA
*
59494865 TATATGTGCTTA
1 TATATATGCTTA
59494877 TATATATG
1 TATATATG
59494885 TGAGTGATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.50
Consensus pattern (12 bp):
TATATATGCTTA
Found at i:59508124 original size:79 final size:78
Alignment explanation
Indices: 59508024--59508241 Score: 260
Period size: 79 Copynumber: 2.7 Consensus size: 78
59508014 GCTACTCGTT
* *
59508024 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCAG
59508089 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * * ** *
59508104 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTTGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTAGCACAAATGCCTTCGGGA-CTTAACCCAG
59508168 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * *
59508183 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TAGCACAAATGCCTTCGGGACTTA
59508242 GCCCGGACAT
Statistics
Matches: 119, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 4 0.03
79 65 0.55
80 38 0.32
81 12 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCAGAT
TTAGTAACTCGCA
Found at i:59508232 original size:119 final size:120
Alignment explanation
Indices: 59508024--59508248 Score: 298
Period size: 119 Copynumber: 1.9 Consensus size: 120
59508014 GCTACTCGTT
59508024 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
* * *
59508089 ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTTGCA
66 ATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTTGCA
* * **
59508143 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* *
59508205 CGGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
63 CAGATATAGTAAC-TAGCACCAAAGCCTTCGGGACTTAGCCCGGA
59508249 CATCATTCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
118 6 0.07
119 69 0.75
120 17 0.18
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
ATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTTGCA
Found at i:59508248 original size:40 final size:40
Alignment explanation
Indices: 59508005--59508248 Score: 275
Period size: 40 Copynumber: 6.1 Consensus size: 40
59507995 CGGAATTTAA
** *
59508005 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
59508045 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
59508085 CCAGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
59508124 CCGGA-ATTAGTAACTTGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
59508164 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
59508204 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
59508244 CCGGA
1 CCGGA
59508249 CATCATTCGA
Statistics
Matches: 176, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 31 0.18
40 132 0.75
41 11 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:59509863 original size:37 final size:37
Alignment explanation
Indices: 59509810--59509900 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
59509800 TATAAAAGAA
59509810 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
59509847 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
59509884 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
59509901 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:59510051 original size:49 final size:49
Alignment explanation
Indices: 59509996--59510210 Score: 376
Period size: 49 Copynumber: 4.4 Consensus size: 49
59509986 TTTTACATTA
59509996 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
59510045 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
59510094 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
59510143 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
59510192 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
59510211 CATATATGTA
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 160 1.00
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:59513040 original size:29 final size:29
Alignment explanation
Indices: 59513004--59513167 Score: 310
Period size: 29 Copynumber: 5.7 Consensus size: 29
59512994 TGTTGAAAAA
* *
59513004 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
59513033 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
59513062 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
59513091 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
59513120 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
59513149 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
59513168 AATCATTCGC
Statistics
Matches: 133, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 133 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:59515274 original size:37 final size:37
Alignment explanation
Indices: 59515221--59515342 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
59515211 TATAAAAGAA
*
59515221 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
59515258 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
59515295 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
59515332 GTCTCACCCGG
1 GTCTTACCCGG
59515343 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:59515499 original size:49 final size:49
Alignment explanation
Indices: 59515444--59515658 Score: 376
Period size: 49 Copynumber: 4.4 Consensus size: 49
59515434 TTTTACATTA
59515444 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
59515493 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
59515542 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
59515591 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
59515640 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
59515659 CATATATGTA
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 160 1.00
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:59528963 original size:28 final size:28
Alignment explanation
Indices: 59528892--59528963 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 28
59528882 TTGATATTTT
**
59528892 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTACCATTCTCAATATCTC
* *
59528920 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTACCATTCTCAATATCTC
* * *
59528948 GTATACTGAGTACCAT
1 GCACACTAAGTACCAT
59528964 ATTTGATTGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTACCATTCTCAATATCTC
Found at i:59531660 original size:28 final size:29
Alignment explanation
Indices: 59531628--59531685 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
59531618 TCCTTAACTC
59531628 AAACTTTTGAAAATTACA-ATTTGCCCCT
1 AAACTTTTGAAAATTACACATTTGCCCCT
* * *
59531656 AAACTTTTGCAATTTACACTTTTGCCCCT
1 AAACTTTTGAAAATTACACATTTGCCCCT
59531685 A
1 A
59531686 GGCTCGGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (29 bp):
AAACTTTTGAAAATTACACATTTGCCCCT
Found at i:59533905 original size:20 final size:20
Alignment explanation
Indices: 59533880--59533917 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
59533870 GTTTATTCGC
*
59533880 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
59533900 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
59533918 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:59538350 original size:24 final size:24
Alignment explanation
Indices: 59538318--59538380 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
59538308 AATCTCAAAT
*
59538318 GCACTATGTGTGCGATTTATTATG
1 GCACTATGTGTGCGATTTACTATG
59538342 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
59538366 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
59538381 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:59540476 original size:40 final size:40
Alignment explanation
Indices: 59540368--59540477 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
59540358 ATTGAATGAT
* * * * *
59540368 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
59540408 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
59540448 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
59540478 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:59540492 original size:40 final size:39
Alignment explanation
Indices: 59540368--59540517 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
59540358 ATTGAATGAT
* * * * * * *
59540368 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
59540408 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
59540448 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
59540488 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
59540518 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:59548663 original size:24 final size:24
Alignment explanation
Indices: 59548631--59548693 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
59548621 AATCTCAAAT
*
59548631 GCACTATGTGTGCGATTTATTATG
1 GCACTATGTGTGCGATTTACTATG
59548655 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
59548679 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
59548694 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:59567428 original size:27 final size:26
Alignment explanation
Indices: 59567388--59567499 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
59567378 AGGAAGCGTC
*
59567388 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
59567415 CTGGCGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
59567442 CTGGTGGCTCTACCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
59567470 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
59567496 CTGG
1 CTGG
59567500 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.68
28 16 0.22
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:59567492 original size:54 final size:54
Alignment explanation
Indices: 59567388--59567499 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
59567378 AGGAAGCGTC
* *
59567388 CTGGTGGCTATGCCACAATTATCTGATCTGGCGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGCGACTCTGCCACATATATCTGTT
* * * *
59567442 CTGGTGGCTCTACCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATACCACAATTATCTG-ATCTGGCGACTCTGCCACATATATCTGTT
59567496 CTGG
1 CTGG
59567500 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGCGACTCTGCCACATATATCTGTT
Found at i:59570275 original size:17 final size:17
Alignment explanation
Indices: 59570253--59570289 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
59570243 ACTCATTATT
59570253 TATTCAT-AACCTAAATA
1 TATTCATCAACC-AAATA
59570270 TATTCATCAACCAAATA
1 TATTCATCAACCAAATA
59570287 TAT
1 TAT
59570290 CTAATTTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (17 bp):
TATTCATCAACCAAATA
Found at i:59571874 original size:56 final size:56
Alignment explanation
Indices: 59571738--59571876 Score: 226
Period size: 56 Copynumber: 2.5 Consensus size: 56
59571728 TCCCAGATAG
* *
59571738 GGTCTTACTCGCACACATTTATCGGA-GTCACATATCGATGCCAATGTATAAAATGT
1 GGTCTTACTCGCACACATATATC-GATGTCACATATCGATGCCAATGTATAAAACGT
59571794 GGTCTTACTCGCACACATATATCGATGTCACATATCGATGCCAATGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGATGTCACATATCGATGCCAATGTATAAAACGT
* *
59571850 GGTCTTACTCACACATATATATCGATG
1 GGTCTTACTCGCACACATATATCGATG
59571877 CCATGGTCTT
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
55 2 0.03
56 76 0.97
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGATGTCACATATCGATGCCAATGTATAAAACGT
Found at i:59580479 original size:27 final size:27
Alignment explanation
Indices: 59580449--59580636 Score: 148
Period size: 27 Copynumber: 7.0 Consensus size: 27
59580439 AATTTACCAA
* *
59580449 ATTACCAAAATTCCCAAAATACCCTTG
1 ATTAGCAAAATTACCAAAATACCCTTG
59580476 ATTAGCAAAATTACCAAAATACCCCTTG
1 ATTAGCAAAATTACCAAAATA-CCCTTG
* * *
59580504 -TTTGTAAAATTACCAAAATACCCCTG
1 ATTAGCAAAATTACCAAAATACCCTTG
* * * * *
59580530 GTTTGTAAATTTTACC-AAATACCCCTG
1 ATTAGCAAA-ATTACCAAAATACCCTTG
* * * * **
59580557 ATTTGTAAAATTATCGAAATACCCCCG
1 ATTAGCAAAATTACCAAAATACCCTTG
* *
59580584 ATTTGCAAAATTACCGAAATA-CCTCTG
1 ATTAGCAAAATTACCAAAATACCCT-TG
* *
59580611 ATTTGCAAAATTACTAAAATACCCTT
1 ATTAGCAAAATTACCAAAATACCCTT
59580637 ATAGGGTAGA
Statistics
Matches: 139, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
26 11 0.08
27 114 0.82
28 14 0.10
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.30
Consensus pattern (27 bp):
ATTAGCAAAATTACCAAAATACCCTTG
Found at i:59580550 original size:54 final size:54
Alignment explanation
Indices: 59580455--59580634 Score: 211
Period size: 54 Copynumber: 3.3 Consensus size: 54
59580445 CCAAATTACC
* * *
59580455 AAAATTCCCAAAATACCCTTGATTAGCAAAATTACCAAAATACCCCTTG-TTTGT
1 AAAATTACCAAAATACCCCTGATTTGCAAAATTACCAAAATACCCC-TGATTTGT
* * *
59580509 AAAATTACCAAAATACCCCTGGTTTGTAAATTTTACC-AAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGCAAA-ATTACCAAAATACCCCTGATTTGT
* * * * * *
59580563 AAAATTATCGAAATACCCCCGATTTGCAAAATTACCGAAATACCTCTGATTTGC
1 AAAATTACCAAAATACCCCTGATTTGCAAAATTACCAAAATACCCCTGATTTGT
*
59580617 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
59580635 TTATAGGGTA
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 7 0.07
54 94 0.89
55 5 0.05
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.29
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGATTTGCAAAATTACCAAAATACCCCTGATTTGT
Found at i:59580604 original size:81 final size:81
Alignment explanation
Indices: 59580465--59580615 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
59580455 AAAATTCCCA
* * *
59580465 AAATACCCTTGATTAGCAAAATTACCAAAATACCCCTTGTTTGTAAAATTACCAAAATACCCCTG
1 AAATACCCCTGATTAGCAAAATTACCAAAATACCCCTCGTTTGCAAAATTACCAAAATACCCCTG
*
59580530 GTTTGTAAATTTTACC
66 ATTTGTAAATTTTACC
* * * * * *
59580546 AAATACCCCTGATTTGTAAAATTATCGAAATACCCC-CGATTTGCAAAATTACCGAAATACCTCT
1 AAATACCCCTGATTAGCAAAATTACCAAAATACCCCTCG-TTTGCAAAATTACCAAAATACCCCT
59580610 GATTTG
65 GATTTG
59580616 CAAAATTACT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
80 1 0.02
81 58 0.98
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATACCCCTGATTAGCAAAATTACCAAAATACCCCTCGTTTGCAAAATTACCAAAATACCCCTG
ATTTGTAAATTTTACC
Found at i:59580631 original size:81 final size:80
Alignment explanation
Indices: 59580454--59580634 Score: 193
Period size: 81 Copynumber: 2.2 Consensus size: 80
59580444 ACCAAATTAC
* * * *
59580454 CAAAATTCCCAAAATACCCTTGATTAGCAAAATTACCAAAATACCCCTTGTTTGTAAAATTACCA
1 CAAAATT-ACAAAATACCCCTGATTAGCAAAATTACCAAAATACCCCTCGTTTGCAAAATTACCA
*
59580519 AAATACCCCTGGTTTG
65 AAATACCCCTGATTTG
* * * * * * *
59580535 TAAATTTTACCAAATACCCCTGATTTGTAAAATTATCGAAATACCCC-CGATTTGCAAAATTACC
1 CAAA-ATTACAAAATACCCCTGATTAGCAAAATTACCAAAATACCCCTCG-TTTGCAAAATTACC
* *
59580599 GAAATACCTCTGATTTG
64 AAAATACCCCTGATTTG
59580616 CAAAATTACTAAAATACCC
1 CAAAATTAC-AAAATACCC
59580635 TTATAGGGTA
Statistics
Matches: 80, Mismatches: 17, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
80 5 0.06
81 73 0.91
82 2 0.03
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (80 bp):
CAAAATTACAAAATACCCCTGATTAGCAAAATTACCAAAATACCCCTCGTTTGCAAAATTACCAA
AATACCCCTGATTTG
Found at i:59581324 original size:27 final size:27
Alignment explanation
Indices: 59580627--59581324 Score: 810
Period size: 27 Copynumber: 26.0 Consensus size: 27
59580617 AAAATTACTA
* *
59580627 AAATACCCTTATAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * **
59580654 -AATACCCTTGTAGGGTAAAAATACTA
1 AAATACCCTTGTAGGGTAGAATTACCG
*
59580680 AAATACCCTTGTAGGGTAGAATTACCA
1 AAATACCCTTGTAGGGTAGAATTACCG
*
59580707 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
59580734 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
59580761 AAATACCCTTATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
59580788 AAATACCCTTGCAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* ** *
59580815 AAATACCCTTGTTGAATAGAATTACCA
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
59580842 AAATACCCCTATAAGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
59580869 AAATACCCTTCTAGGGTAGAAATA-CA
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
59580895 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
59580922 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
59580949 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
59580976 AAATACCCCTGTAGAGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
59581003 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
59581030 AAATACCCTTGTAGGATAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
59581057 AAATACCTTTGTAGGGTAAAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
59581084 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
59581111 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * **
59581138 AAACACCCCTATAGGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
59581165 AAATACCCTTGTAGGATAGAAATT-CCG
1 AAATACCCTTGTAGGGTAG-AATTACCG
* **
59581192 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACCG
*
59581219 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
**
59581246 AAATACCCTTGTAGGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
59581273 AAATACCCCTATA-GGTAGAGTTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
59581299 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
59581325 ATTTTGCCCA
Statistics
Matches: 578, Mismatches: 88, Indels: 10
0.86 0.13 0.01
Matches are distributed among these distances:
26 65 0.11
27 509 0.88
28 4 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:59582068 original size:2 final size:2
Alignment explanation
Indices: 59582061--59582098 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
59582051 GCTTCGCTAC
59582061 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
59582099 CTGTTCTGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:59591303 original size:40 final size:40
Alignment explanation
Indices: 59591245--59591412 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
59591235 CAATTGAATG
* *
59591245 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
59591286 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
59591325 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
59591365 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
59591405 ATATCCGG
1 ATATCCGG
59591413 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:59591383 original size:80 final size:79
Alignment explanation
Indices: 59591245--59591412 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
59591235 CAATTGAATG
* * *
59591245 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
59591310 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
59591325 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
59591389 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
59591405 ATATCCGG
1 ATATCCGG
59591413 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:59599306 original size:40 final size:40
Alignment explanation
Indices: 59599248--59599415 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
59599238 CAATTGAATG
* *
59599248 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
59599289 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
59599328 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
59599368 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
59599408 ATATCCGG
1 ATATCCGG
59599416 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:59599386 original size:80 final size:79
Alignment explanation
Indices: 59599248--59599415 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
59599238 CAATTGAATG
* * *
59599248 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
59599313 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
59599328 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
59599392 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
59599408 ATATCCGG
1 ATATCCGG
59599416 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:59631500 original size:20 final size:20
Alignment explanation
Indices: 59631475--59631514 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
59631465 TAACGCATAG
*
59631475 TTCATACGCGAACTCAAATC
1 TTCATACCCGAACTCAAATC
59631495 TTCATACCCGAACTCAAATC
1 TTCATACCCGAACTCAAATC
59631515 ACTAATTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.33, G:0.07, T:0.25
Consensus pattern (20 bp):
TTCATACCCGAACTCAAATC
Found at i:59632441 original size:17 final size:17
Alignment explanation
Indices: 59632419--59632455 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
59632409 ACTCATTATT
59632419 TATTCAT-AACCTAAATA
1 TATTCATCAACC-AAATA
59632436 TATTCATCAACCAAATA
1 TATTCATCAACCAAATA
59632453 TAT
1 TAT
59632456 CTAATTTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (17 bp):
TATTCATCAACCAAATA
Found at i:59634037 original size:56 final size:56
Alignment explanation
Indices: 59633900--59634038 Score: 224
Period size: 56 Copynumber: 2.5 Consensus size: 56
59633890 TCCCAGATAG
* * * *
59633900 GGTCTTACTCGCACACATTTATCGAAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGATGTCACATATCAATGCCAACCTATAAAACGT
*
59633956 GGTCTTACTCTCACACATATATCGATGTCACATATCAATGCCAACCTATAAAACGT
1 GGTCTTACTCGCACACATATATCGATGTCACATATCAATGCCAACCTATAAAACGT
*
59634012 GGTCTTACTCGCACATATATATCGATG
1 GGTCTTACTCGCACACATATATCGATG
59634039 CCATGGTCTT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 76 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGATGTCACATATCAATGCCAACCTATAAAACGT
Found at i:59644951 original size:29 final size:29
Alignment explanation
Indices: 59644909--59644990 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
59644899 TATTTTTTTT
59644909 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
59644938 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
59644967 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
59644991 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:59650830 original size:39 final size:38
Alignment explanation
Indices: 59650779--59650888 Score: 132
Period size: 39 Copynumber: 2.8 Consensus size: 38
59650769 ATCACGATTT
*
59650779 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAAA-GCACTA
**
59650818 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAAAG-CACTA
*
59650858 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
59650889 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
38 1 0.02
39 32 0.52
40 29 0.47
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAAAGCACTA
Found at i:59650885 original size:40 final size:38
Alignment explanation
Indices: 59650779--59650927 Score: 140
Period size: 40 Copynumber: 3.8 Consensus size: 38
59650769 ATCACGATTT
*
59650779 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAAATGACTA
**
59650818 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAAATG--ACTA
* ** *
59650858 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA-AATGACTA
* *
59650898 GCATAATTGTCTTCGGG-CTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
59650928 TCATTCAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.01
39 44 0.48
40 46 0.50
41 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAAATGACTA
Found at i:59661554 original size:28 final size:28
Alignment explanation
Indices: 59661489--59661589 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
59661479 ATAGTGAATC
*
59661489 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
59661518 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
59661546 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
59661576 CGCACACTTAGTGC
1 CGCACACTTAGTGC
59661590 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:59664677 original size:79 final size:79
Alignment explanation
Indices: 59664584--59664788 Score: 308
Period size: 79 Copynumber: 2.6 Consensus size: 79
59664574 TCTTCGGAAT
* * *
59664584 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGG-TATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTCGCAC
59664647 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
*
59664662 TTAGCCCGGATATAACACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTCGCACA
1 TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTCGCACA
59664727 AATGCCTTCGGGTC
66 AATGCCTTCGGGTC
* * *
59664741 TTAGCCCGGATATAATCACTAGCATAAATGCCTT-GGGGCTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGG
59664789 GTATCATTCA
Statistics
Matches: 116, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
78 34 0.29
79 66 0.57
80 16 0.14
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTCGCACA
AATGCCTTCGGGTC
Found at i:59664733 original size:40 final size:39
Alignment explanation
Indices: 59664584--59664788 Score: 272
Period size: 39 Copynumber: 5.2 Consensus size: 39
59664574 TCTTCGGAAT
** *
59664584 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAA-CACTCGCACAAATGCCTTCGGGTC
* *
59664623 TTAACCCGG-TATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTCGCACAAATGCCTTCGGGTC
59664662 TTAGCCCGGATATAACACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACACTCGCACAAATGCCTTCGGGTC
*
59664701 TTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTCGCACAAATGCCTTCGGGTC
* * *
59664741 TTAGCCCGGATATAATCACTAGCATAAATGCCTT-GGGGC
1 TTAGCCCGGATATAA-CACTCGCACAAATGCCTTCGGGTC
59664780 TTAGCCCGG
1 TTAGCCCGG
59664789 GTATCATTCA
Statistics
Matches: 149, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
38 1 0.01
39 86 0.58
40 61 0.41
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
TTAGCCCGGATATAACACTCGCACAAATGCCTTCGGGTC
Found at i:59672632 original size:40 final size:40
Alignment explanation
Indices: 59672587--59672774 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
59672577 ATAATCACAA
* * * *
59672587 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
59672627 GCACAAATGCCTTCGGGTCTTAGCCCCGATATAACCACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
59672667 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
59672707 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* *
59672747 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
59672775 GTATCATTCA
Statistics
Matches: 134, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 133 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:59672690 original size:80 final size:80
Alignment explanation
Indices: 59672574--59672778 Score: 311
Period size: 80 Copynumber: 2.6 Consensus size: 80
59672564 AATTTAGCTG
* * * *
59672574 GATATAATCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCT
1 GATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAACAACTCGCACAAATGCCT
59672639 TCGGGTCTTAGCCCC
66 TCGGGTCTTAGCCCC
* *
59672654 GATATAACCACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTCGCACAAATGCCT
1 GATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAACAACTCGCACAAATGCCT
*
59672719 TCGGGTCTTAGCCCG
66 TCGGGTCTTAGCCCC
* * * *
59672734 GATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGGGTAT
1 GATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
59672779 CATTCAAATG
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 112 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
GATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAACAACTCGCACAAATGCCT
TCGGGTCTTAGCCCC
Found at i:59682211 original size:21 final size:21
Alignment explanation
Indices: 59682182--59682225 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
59682172 ATAGGGATTT
59682182 ATTTGTAAAATGTG-AAAATA
1 ATTTGTAAAATGTGTAAAATA
*
59682202 ATTTAGTAAAATGTGTGAAATA
1 ATTT-GTAAAATGTGTAAAATA
59682224 AT
1 AT
59682226 GAAATGTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 10 0.48
22 7 0.33
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (21 bp):
ATTTGTAAAATGTGTAAAATA
Found at i:59686267 original size:93 final size:90
Alignment explanation
Indices: 59686107--59686418 Score: 306
Period size: 94 Copynumber: 3.4 Consensus size: 90
59686097 GGTGATTTGT
* *
59686107 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGTAAGACAT
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCCAGACGAGAGCCAGTGTAAGACAT
* * **
59686172 GTCTGGGACATGCTTCAGCCATATTATGA
64 GTCTGGGACACGCATCAGCCA-AGAAT-A
* * * *
59686201 GTGCCAGAGTAAGACATGTCTGAGACATGCATCGGCCTCGACAGA-GATAGCCAGTGTAAGACAT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATC--CAGACGAGAGCCAGTGTAAGACAT
* *
59686265 GTCTGGGACACGCATCGGCCAAGAATT
64 GTCTGGGACACGCATCAGCCAAGAATA
* * * *
59686292 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAACGCGCAT--ATATGAGAGCCAGTATAAGAC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCAT---CG-GCATCCAGACGAGAGCCAGTGTAAGA-
* * * *
59686355 CATGTCTGGGACATGGCATCGGCCAAGAGTT
61 CATGTCTGGGACA-CGCATCAGCCAAGAATA
*
59686386 GTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC
59686419 AGCACGCATA
Statistics
Matches: 188, Mismatches: 21, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
91 32 0.17
92 27 0.14
93 60 0.32
94 66 0.35
95 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (90 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCCAGACGAGAGCCAGTGTAAGACATGT
CTGGGACACGCATCAGCCAAGAATA
Found at i:59686362 original size:49 final size:48
Alignment explanation
Indices: 59686109--59686468 Score: 186
Period size: 47 Copynumber: 7.7 Consensus size: 48
59686099 TGATTTGTGT
* * * *
59686109 GCCAGTGTAAGACCATGTCTGGGACATGGCAT--CG-GCATCCAGACGAGG
1 GCCAGTATAAGA-CATGTCTGGGACATGGCATCACGCGCAT--ATATGAGA
* * * *
59686157 GCTAGTGTAAGACATGTCTGGGACAT-GCTTCA-GC-CATATTATGAGT
1 GCCAGTATAAGACATGTCTGGGACATGGCATCACGCGCATA-TATGAGA
* * * * * *
59686203 GCCAG-AGTAAGACATGTCTGAGACAT-GCATC-GGCCTCGACAGA-GATA
1 GCCAGTA-TAAGACATGTCTGGGACATGGCATCACG-CGC-ATATATGAGA
* * * * * *
59686250 GCCAGTGTAAGACATGTCTGGGACA-CGCATC-GGC-CA-AGAAT-TGT
1 GCCAGTATAAGACATGTCTGGGACATGGCATCACGCGCATA-TATGAGA
* *
59686294 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAACGCGCATATATGAGA
1 GCCAGTATAAGACATGTCTGGGACATGGCATC-ACGCGCATATATGAGA
* * * *
59686342 GCCAGTATAAGACCATGTCTGGGACATGGCATC-GGC-CA-AGA-GTTGT
1 GCCAGTATAAGA-CATGTCTGGGACATGGCATCACGCGCATATATG-AGA
* * *
59686388 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCACGCATATATGAGA
1 GCCAGTATAAGACATGTCTGGGACATGGCATCA-CGCGCATATATGAGA
*
59686436 GCCAGTATAAGACCATGTCTAGGACATGGCATC
1 GCCAGTATAAGA-CATGTCTGGGACATGGCATC
59686469 GGCAATTCAT
Statistics
Matches: 243, Mismatches: 40, Indels: 56
0.72 0.12 0.17
Matches are distributed among these distances:
43 1 0.00
44 36 0.15
45 17 0.07
46 51 0.21
47 58 0.24
48 40 0.16
49 30 0.12
50 10 0.04
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (48 bp):
GCCAGTATAAGACATGTCTGGGACATGGCATCACGCGCATATATGAGA
Found at i:59686394 original size:94 final size:94
Alignment explanation
Indices: 59686249--59686471 Score: 378
Period size: 94 Copynumber: 2.4 Consensus size: 94
59686239 CGACAGAGAT
* *
59686249 AGCCAGTGTAAGA-CATGTCTGGGACA-CGCATCGGCCAAGAATTGTGCTAGTGTAAGACATGTC
1 AGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCCAAGAATTGTGCTAGTGTAAGACATGTC
*
59686312 TGGGACATGCATCAACGCGCATATATGAG
66 TGGGACATGCATCAACACGCATATATGAG
*
59686341 AGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCCAAGAGTTGTGCTAGTGTAAGACATGTC
1 AGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCCAAGAATTGTGCTAGTGTAAGACATGTC
*
59686406 TGGGACATGCATCAGCACGCATATATGAG
66 TGGGACATGCATCAACACGCATATATGAG
*
59686435 AGCCAGTATAAGACCATGTCTAGGACATGGCATCGGC
1 AGCCAGTATAAGACCATGTCTGGGACATGGCATCGGC
59686472 AATTCATTCC
Statistics
Matches: 123, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
92 12 0.10
93 13 0.11
94 98 0.80
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (94 bp):
AGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCCAAGAATTGTGCTAGTGTAAGACATGTC
TGGGACATGCATCAACACGCATATATGAG
Found at i:59699168 original size:32 final size:32
Alignment explanation
Indices: 59699122--59699186 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
59699112 CTATAAAGGA
*
59699122 GTCTGCATTTACAATGGCACCATTCCCTTCAT
1 GTCTGCATTGACAATGGCACCATTCCCTTCAT
59699154 GTCTGCATTGACAATGGCACCATTCCCTTCAT
1 GTCTGCATTGACAATGGCACCATTCCCTTCAT
59699186 G
1 G
59699187 GCTAGAAGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.32
Consensus pattern (32 bp):
GTCTGCATTGACAATGGCACCATTCCCTTCAT
Found at i:59702136 original size:55 final size:53
Alignment explanation
Indices: 59702028--59702223 Score: 198
Period size: 55 Copynumber: 3.6 Consensus size: 53
59702018 ATTAGGGTTT
** * * * *
59702028 AAGGATACCATGTAAGTTCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGATAA-G-TTCATAAGGC
* * *
59702083 AAGGAAATCATGTAAGATCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGGC
* * * * *
59702138 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
59702191 AAGGATACCATGTAAGACCATGTCAAGACATGG
1 AAGGATACCATGTAAGACCATGTCAAGACATGG
59702224 AAATGGTAAG
Statistics
Matches: 118, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
52 6 0.05
53 34 0.29
54 8 0.07
55 66 0.56
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:59702234 original size:108 final size:110
Alignment explanation
Indices: 59702035--59702235 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
59702025 TTTAAGGATA
** *
59702035 CCATGTAAGTTCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* * *
59702100 TCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
* * *
59702145 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
59702207 ACCATGTCAAGACATGGAAATGGTAAGTT
65 ACCATGTCAAGACATGGAAATGATAAGTT
59702236 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:59702377 original size:23 final size:24
Alignment explanation
Indices: 59702351--59702395 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
59702341 AAGGTAAGGT
*
59702351 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
59702374 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
59702396 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:59702495 original size:16 final size:16
Alignment explanation
Indices: 59702474--59702504 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
59702464 ATAAATTTGA
59702474 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
59702490 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
59702505 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:59705693 original size:14 final size:15
Alignment explanation
Indices: 59705676--59705704 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
59705666 TTTATTTTTA
59705676 AATTTGGT-TATGTT
1 AATTTGGTCTATGTT
59705690 AATTTGGTCTATGTT
1 AATTTGGTCTATGTT
59705705 CGCTTTAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.21, C:0.03, G:0.21, T:0.55
Consensus pattern (15 bp):
AATTTGGTCTATGTT
Found at i:59710743 original size:42 final size:42
Alignment explanation
Indices: 59710696--59710787 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
59710686 TGGCCCTTAG
* ** *
59710696 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
59710738 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
59710780 GCCTATTT
1 GCCCATTT
59710788 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:59710963 original size:25 final size:25
Alignment explanation
Indices: 59710935--59711004 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
59710925 CTCTTTTAAT
59710935 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
59710960 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
59710985 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
59711005 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:59711477 original size:20 final size:20
Alignment explanation
Indices: 59711452--59711499 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
59711442 TGGGCCCAAA
59711452 AGCCCATTTGGCCCAATTCC
1 AGCCCATTTGGCCCAATTCC
59711472 AGCCCATTTGGCCCAATTCC
1 AGCCCATTTGGCCCAATTCC
59711492 AGCCCATT
1 AGCCCATT
59711500 GAGGCCCAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.21, C:0.40, G:0.15, T:0.25
Consensus pattern (20 bp):
AGCCCATTTGGCCCAATTCC
Found at i:59712084 original size:27 final size:26
Alignment explanation
Indices: 59712007--59712096 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 26
59711997 AAAAAAGTTA
* **
59712007 AGGGTATTTCTGTAATTTTGTAAATT
1 AGGGTATTTCGGTAATTTTACAAATT
*
59712033 AGGGGTATTTTGGTAATTTTACAAATT
1 A-GGGTATTTCGGTAATTTTACAAATT
*
59712060 GAGGGTATTTCGGTAATTTCT-CAAACT
1 -AGGGTATTTCGGTAATTT-TACAAATT
59712087 AGTGGTATTT
1 AG-GGTATTT
59712097 TAGCAATTCT
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
26 3 0.06
27 49 0.91
28 2 0.04
ACGTcount: A:0.27, C:0.07, G:0.22, T:0.44
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAAATT
Found at i:59712170 original size:27 final size:27
Alignment explanation
Indices: 59712136--59712223 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
59712126 GTAATTTCAC
*
59712136 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTATA
* *
59712163 AA-CTGAGGGTAAAATGGTAATTTTATA
1 AATC-GAGGGTAAAACGATAATTTTATA
*
59712190 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTATA
59712217 AATCGAG
1 AATCGAG
59712224 AGTACTTTGG
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.02
27 51 0.96
28 1 0.02
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTTTATA
Found at i:59712252 original size:54 final size:53
Alignment explanation
Indices: 59712126--59712254 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 53
59712116 GGGTATTTTA
* * * *
59712126 GTAATTTCACAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTACAATCGAGGGTAAAACGATAATTCTATAAACTGAGAGTAAAATG
* ***
59712179 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAA-TCGAGAGTACTTTG
1 GTAATTTTA-CAATCGAGGGTAAAACGATAATTCTATAAACT-GAGAGTAAAATG
*
59712233 GTAATTTTACAAGTTGAGGGTA
1 GTAATTTTACAA-TCGAGGGTA
59712255 TTTCAGTAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
53 11 0.17
54 52 0.83
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.32
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAACGATAATTCTATAAACTGAGAGTAAAATG
Found at i:59720484 original size:13 final size:13
Alignment explanation
Indices: 59720466--59720494 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
59720456 GGTTGTTTAT
59720466 TAAACTAATTAAC
1 TAAACTAATTAAC
59720479 TAAACTAATTAAC
1 TAAACTAATTAAC
59720492 TAA
1 TAA
59720495 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:59726063 original size:30 final size:30
Alignment explanation
Indices: 59726018--59726077 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
59726008 ATTTAATACG
*
59726018 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
59726048 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
59726078 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:59752115 original size:2 final size:2
Alignment explanation
Indices: 59752108--59752133 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
59752098 GCTCTTGCAC
59752108 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
59752134 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:59752929 original size:40 final size:40
Alignment explanation
Indices: 59752846--59752945 Score: 105
Period size: 40 Copynumber: 2.5 Consensus size: 40
59752836 TCGAATGATG
* * *
59752846 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGATTTGTGCTAAGTGACTAAA
* *
59752886 TCCGGACTAAGAT-CCGAAGGTATTTGTGC-GAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGG-ATTTGTGCTAAGTGACTAAA
**
59752926 TCCGGGTTAAGTCCCGAAGG
1 TCCGGACTAAGTCCCGAAGG
59752946 GTAAGTCCCG
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
39 1 0.02
40 41 0.82
41 8 0.16
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGATTTGTGCTAAGTGACTAAA
Found at i:59752950 original size:14 final size:14
Alignment explanation
Indices: 59752933--59752959 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
59752923 AAATCCGGGT
59752933 TAAGTCCCGAAGGG
1 TAAGTCCCGAAGGG
59752947 TAAGTCCCGAAGG
1 TAAGTCCCGAAGG
59752960 CATTTGTGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.22, G:0.33, T:0.15
Consensus pattern (14 bp):
TAAGTCCCGAAGGG
Found at i:59755410 original size:38 final size:35
Alignment explanation
Indices: 59755351--59755451 Score: 129
Period size: 31 Copynumber: 2.9 Consensus size: 35
59755341 TCAATCATGC
*
59755351 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
59755390 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
59755421 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
59755452 ACTGTAAACG
Statistics
Matches: 57, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
31 27 0.47
33 3 0.05
34 1 0.02
36 1 0.02
38 14 0.25
39 11 0.19
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.40
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:59755412 original size:31 final size:31
Alignment explanation
Indices: 59755374--59755455 Score: 155
Period size: 31 Copynumber: 2.6 Consensus size: 31
59755364 CCTTTTCATA
*
59755374 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
59755405 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
59755436 TTTCATATTTCATATTACTG
1 TTTCATATTTCATATTACTG
59755456 TAAACGGTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:59755694 original size:24 final size:24
Alignment explanation
Indices: 59755643--59755785 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
59755633 GCTTTATCAT
*
59755643 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
59755668 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
59755692 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
59755715 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
59755739 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
59755763 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
59755786 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Done.