Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 213 of 427
Found at i:60038108 original size:40 final size:40
Alignment explanation
Indices: 60038046--60038221 Score: 232
Period size: 40 Copynumber: 4.4 Consensus size: 40
60038036 AAACCAAGTA
* * *
60038046 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
60038085 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
60038125 CCTTCGGGACTTAGCCTAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
60038165 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
60038205 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
60038222 CGTTATCATC
Statistics
Matches: 121, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 14 0.12
40 107 0.88
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:60045453 original size:48 final size:47
Alignment explanation
Indices: 60045387--60045671 Score: 282
Period size: 46 Copynumber: 6.1 Consensus size: 47
60045377 CCTAGATATG
* *
60045387 GTCTTACACTGGCACTCATATATTCGTGCCGATGCATGTCCCAGACAT
1 GTCTTACACTAGCTCTCATATA-TCGTGCCGATGCATGTCCCAGACAT
*
60045435 GTCTTACACTAGCTCTCATATATCTGTGCCGATGCATGTCCCAAACAT
1 GTCTTACACTAGCTCTCATATATC-GTGCCGATGCATGTCCCAGACAT
* * * *
60045483 GCCTTACACTAG----CACATCTCGTAGCCGATGCATGTCCCAAACAT
1 GTCTTACACTAGCTCTCATATATCGT-GCCGATGCATGTCCCAGACAT
* * * * *
60045527 CTCTTACACTGGCT-T-ACATCTCGAGGCCGATGCATGTCCCAGACAT
1 GTCTTACACTAGCTCTCATATATCG-TGCCGATGCATGTCCCAGACAT
* * **
60045573 GTCTTACACTAGCTCTCGTCT-TAATGCCGATGCATGTCCCAGACAT
1 GTCTTACACTAGCTCTCATATATCGTGCCGATGCATGTCCCAGACAT
* * *
60045619 GTCTTACACTGGCATTTCATA-AT-GTGGCCGATGCATGTCCCACACAT
1 GTCTTACACTAGC-TCTCATATATCGT-GCCGATGCATGTCCCAGACAT
60045666 GTCTTA
1 GTCTTA
60045672 AATTGGCTCA
Statistics
Matches: 201, Mismatches: 25, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
43 2 0.01
44 36 0.18
46 74 0.37
47 35 0.17
48 54 0.27
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (47 bp):
GTCTTACACTAGCTCTCATATATCGTGCCGATGCATGTCCCAGACAT
Found at i:60045532 original size:92 final size:90
Alignment explanation
Indices: 60045410--60045671 Score: 316
Period size: 92 Copynumber: 2.9 Consensus size: 90
60045400 ACTCATATAT
*
60045410 TCGT-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATCTGTGCCGATGCATGT
1 TCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TCATATATCTG-GCCGATGCATGT
*
60045474 CCCAAACATGCCTTACACTAGCACATC-
64 CCCAAACATGTCTTACACTAGCAC-TCG
* * * * *
60045501 TCGTAGCCGATGCATGTCCCAAACATCTCTTACACTGGCTT-ACATCTCGAGGCCGATGCATGTC
1 TCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATATATC-TGGCCGATGCATGTC
* *
60045565 CCAGACATGTCTTACACTAGCTCTCG
65 CCAAACATGTCTTACACTAGCACTCG
* *
60045591 TCTTAATGCCGATGCATGTCCCAGACATGTCTTACACTGGCATTTCATA-ATGTGGCCGATGCAT
1 TCGT-A-GCCGATGCATGTCCCAGACATGTCTTACACTGGC--TTCATATATCTGGCCGATGCAT
*
60045655 GTCCCACACATGTCTTA
62 GTCCCAAACATGTCTTA
60045672 AATTGGCTCA
Statistics
Matches: 146, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
89 2 0.01
90 41 0.28
91 7 0.05
92 64 0.44
93 27 0.18
94 3 0.02
95 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (90 bp):
TCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATATATCTGGCCGATGCATGTCC
CAAACATGTCTTACACTAGCACTCG
Found at i:60055165 original size:46 final size:46
Alignment explanation
Indices: 60055115--60055290 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
60055105 TGGTTGAGCA
60055115 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
60055161 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
60055206 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * **
60055254 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60055291 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 63 0.58
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60055271 original size:93 final size:93
Alignment explanation
Indices: 60055112--60055281 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
60055102 GGATGGTTGA
* *
60055112 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60055177 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
60055205 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60055270 TGAGTCCGAGTT
66 TGAGTCCGAGTT
60055282 TGCTTATGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:60060150 original size:14 final size:14
Alignment explanation
Indices: 60060131--60060167 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
60060121 ATCAAATTAT
60060131 CAGGAGATGCATGG
1 CAGGAGATGCATGG
60060145 CAGGAGATGCATGG
1 CAGGAGATGCATGG
*
60060159 CAGAAGATG
1 CAGGAGATG
60060168 AAGTACATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.41, T:0.14
Consensus pattern (14 bp):
CAGGAGATGCATGG
Found at i:60062458 original size:25 final size:27
Alignment explanation
Indices: 60062403--60062458 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 27
60062393 TTTCTCTTAA
*
60062403 ATTTTAATTTTATTCTAATATCTAATT
1 ATTTTAATTTTATTCGAATATCTAATT
60062430 -TTTTAA-TTTATT-GAATCAT-TAATT
1 ATTTTAATTTTATTCGAAT-ATCTAATT
60062454 ATTTT
1 ATTTT
60062459 TATTAATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 8 0.31
25 12 0.46
26 6 0.23
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (27 bp):
ATTTTAATTTTATTCGAATATCTAATT
Found at i:60069832 original size:294 final size:294
Alignment explanation
Indices: 60069303--60069891 Score: 1160
Period size: 294 Copynumber: 2.0 Consensus size: 294
60069293 TTGTAACTCG
60069303 ATCGAAACGAAGTCGTAAACATAGTTGCCAAGCTTAACAACATTCGGCTATTACATATATAAATT
1 ATCGAAACGAAGTCGTAAACATAGTTGCCAAGCTTAACAACATTCGGCTATTACATATATAAATT
60069368 CATATATTTCATTTCAGCATATATAATTTACATTTAATTAAAATTAAGTACATCTATTTGCTTAT
66 CATATATTTCATTTCAGCATATATAATTTACATTTAATTAAAATTAAGTACATCTATTTGCTTAT
60069433 GAACTTACCTCGGACGATATAAAACGGAACGGGACAACTAGTCGACAACTTCTGTTTTCCCCCAA
131 GAACTTACCTCGGACGATATAAAACGGAACGGGACAACTAGTCGACAACTTCTGTTTTCCCCCAA
60069498 TCCAAATCCATTTCTTTGGTTCTCGATCTAAACATATTCAAACTCAGCTCATTCAGACATATTTT
196 TCCAAATCCATTTCTTTGGTTCTCGATCTAAACATATTCAAACTCAGCTCATTCAGACATATTTT
60069563 CATTCAATTTAGTCCAAAAACACATAAATGGGAA
261 CATTCAATTTAGTCCAAAAACACATAAATGGGAA
60069597 ATCGAAACGAAGTCGTAAACATAGTTGCCAAGCTTAACAACATTCGGCTATTACATATATAAATT
1 ATCGAAACGAAGTCGTAAACATAGTTGCCAAGCTTAACAACATTCGGCTATTACATATATAAATT
60069662 CATATATTTCATTTCAGCATATATAATTTACATTTAATTAAAATTAAGTACATCTATTTGCTTAT
66 CATATATTTCATTTCAGCATATATAATTTACATTTAATTAAAATTAAGTACATCTATTTGCTTAT
*
60069727 GAACTTACCTCGGACGATATAAAACGGAACGGGACAACTAGTCGACAACTTCTGTTTTCCCCCTA
131 GAACTTACCTCGGACGATATAAAACGGAACGGGACAACTAGTCGACAACTTCTGTTTTCCCCCAA
*
60069792 TCCAAATCCATTTCTTTGGTTCTCGATCTAAACATATTCAAACTCAGCTCATTCAGACTTATTTT
196 TCCAAATCCATTTCTTTGGTTCTCGATCTAAACATATTCAAACTCAGCTCATTCAGACATATTTT
60069857 CATTCAATTTAGTCCAAAAACACATAAATGGGAA
261 CATTCAATTTAGTCCAAAAACACATAAATGGGAA
60069891 A
1 A
60069892 ATTACCATTT
Statistics
Matches: 293, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
294 293 1.00
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (294 bp):
ATCGAAACGAAGTCGTAAACATAGTTGCCAAGCTTAACAACATTCGGCTATTACATATATAAATT
CATATATTTCATTTCAGCATATATAATTTACATTTAATTAAAATTAAGTACATCTATTTGCTTAT
GAACTTACCTCGGACGATATAAAACGGAACGGGACAACTAGTCGACAACTTCTGTTTTCCCCCAA
TCCAAATCCATTTCTTTGGTTCTCGATCTAAACATATTCAAACTCAGCTCATTCAGACATATTTT
CATTCAATTTAGTCCAAAAACACATAAATGGGAA
Found at i:60071302 original size:47 final size:45
Alignment explanation
Indices: 60071264--60071367 Score: 136
Period size: 47 Copynumber: 2.2 Consensus size: 45
60071254 AATCTGTATA
60071264 TGATTTCTGATGATCTAACGCTGTTTTCAGACTTTCAAAGATCACTT
1 TGATTTCTGATGATCTAACGCTGTTTTCAGACTTTC-AA-ATCACTT
* *
60071311 TTATTTCTGATGATCTAACGTTGTTTTCAGACTTTCAAAGATCACTT
1 TGATTTCTGATGATCTAACGCTGTTTTCAGACTTTC-AA-ATCACTT
*
60071358 TTACTTTCTG
1 TGA-TTTCTG
60071368 TTCAGTCTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
47 48 0.89
48 6 0.11
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.44
Consensus pattern (45 bp):
TGATTTCTGATGATCTAACGCTGTTTTCAGACTTTCAAATCACTT
Found at i:60075333 original size:40 final size:40
Alignment explanation
Indices: 60075278--60075478 Score: 226
Period size: 40 Copynumber: 5.0 Consensus size: 40
60075268 TGAATGATAC
* *
60075278 CCGGGCTAAGTCCCGAAGGCATTTATGCTCGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
*
60075318 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
**
60075358 CCGGGCTAAGACCCGAAGGCATTCGTG-TGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCT-AG-TGATTATAT
* * * ** *
60075398 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
* * * * *
60075438 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
60075478 C
1 C
60075479 TGGCTAAATT
Statistics
Matches: 138, Mismatches: 19, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
39 2 0.01
40 134 0.97
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
Found at i:60080435 original size:29 final size:28
Alignment explanation
Indices: 60080388--60080501 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
60080378 TACCTGTATC
* *
60080388 TGGCCCATTAAG-CCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
60080415 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* *
60080444 TGGCCCATTAGGCCCAAATTACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
60080473 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
60080501 T
1 T
60080502 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
27 11 0.15
28 14 0.19
29 48 0.65
30 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:60080736 original size:16 final size:16
Alignment explanation
Indices: 60080712--60080754 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
60080702 GTAGCCAAAC
60080712 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
* *
60080728 TTTCGGCTTTTCGACT
1 TTTCAGCTTTTCGACA
60080744 TTTCAGCTTTT
1 TTTCAGCTTTT
60080755 GCCGATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.23, G:0.14, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:60081192 original size:21 final size:19
Alignment explanation
Indices: 60081160--60081209 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
60081150 GACTAAGTGA
*
60081160 AAGAAAA-AAATTGTGTAGAG
1 AAGAAAAGAAATTG-GCAG-G
*
60081180 AAGAATAGAAATTGGCAGG
1 AAGAAAAGAAATTGGCAGG
60081199 AAGAAAAGAAA
1 AAGAAAAGAAA
60081210 GAAAAACAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 11 0.42
20 9 0.35
21 6 0.23
ACGTcount: A:0.58, C:0.02, G:0.26, T:0.14
Consensus pattern (19 bp):
AAGAAAAGAAATTGGCAGG
Found at i:60083424 original size:13 final size:13
Alignment explanation
Indices: 60083408--60083433 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60083398 GAATATAAAT
60083408 ACCGAAATAATCA
1 ACCGAAATAATCA
60083421 ACCGAAATAATCA
1 ACCGAAATAATCA
60083434 TGGAAAACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.23, G:0.08, T:0.15
Consensus pattern (13 bp):
ACCGAAATAATCA
Found at i:60092715 original size:13 final size:13
Alignment explanation
Indices: 60092697--60092723 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
60092687 GAACTACCTT
60092697 CATATACCCGTTG
1 CATATACCCGTTG
60092710 CATATACCCGTTG
1 CATATACCCGTTG
60092723 C
1 C
60092724 TACATCTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.30
Consensus pattern (13 bp):
CATATACCCGTTG
Found at i:60092903 original size:29 final size:29
Alignment explanation
Indices: 60092867--60092943 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
60092857 AATTATATTC
* *
60092867 ATATGGCCCATTAAGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
60092896 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
60092925 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
60092944 GTCACATTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:60093692 original size:12 final size:12
Alignment explanation
Indices: 60093675--60093705 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
60093665 CCAAGCTCTC
*
60093675 CCTAGATCCAAT
1 CCTAGACCCAAT
60093687 CCTAGACCCAAT
1 CCTAGACCCAAT
60093699 CCTAGAC
1 CCTAGAC
60093706 ATGTATATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.39, G:0.10, T:0.19
Consensus pattern (12 bp):
CCTAGACCCAAT
Found at i:60093898 original size:29 final size:29
Alignment explanation
Indices: 60093835--60093942 Score: 112
Period size: 29 Copynumber: 3.8 Consensus size: 29
60093825 TTCACATACC
* * *
60093835 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
60093863 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
* **
60093892 TGTATATGGTCCATTAGGCGTAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
60093921 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
60093943 GTCACATTCA
Statistics
Matches: 64, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
27 1 0.02
28 17 0.27
29 45 0.70
30 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:60095042 original size:37 final size:37
Alignment explanation
Indices: 60095000--60095071 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
60094990 CGAACCTTGG
*
60095000 ATCTCCTTGCTAGCTACTAACACCACCTCCCTACTTA
1 ATCTCCTTACTAGCTACTAACACCACCTCCCTACTTA
* *
60095037 ATCTCCTTACTAGCTAGTAACGCCACCTCCCTACT
1 ATCTCCTTACTAGCTACTAACACCACCTCCCTACT
60095072 CCCTAAGTGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.24, C:0.40, G:0.07, T:0.29
Consensus pattern (37 bp):
ATCTCCTTACTAGCTACTAACACCACCTCCCTACTTA
Found at i:60097163 original size:16 final size:16
Alignment explanation
Indices: 60097142--60097182 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
60097132 GTTATCATTG
*
60097142 AAAACCCTTCTTAAAA
1 AAAACCCTTATTAAAA
*
60097158 AAAACCCTAATTAAAA
1 AAAACCCTTATTAAAA
*
60097174 AAAAACCTT
1 AAAACCCTT
60097183 TCAGTTACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAACCCTTATTAAAA
Found at i:60101113 original size:57 final size:57
Alignment explanation
Indices: 60101050--60101159 Score: 150
Period size: 57 Copynumber: 1.9 Consensus size: 57
60101040 AATTTCACAT
* * *
60101050 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATT-ATAAGGCCCATTAGGCCCAAATC
* * *
60101107 ACCTGTATATGGCCTATTAGGCCCAAATCACATTATAAGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTATAAGGCCCATTAGGCCCA
60101160 GTCACATTCA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
57 38 0.83
58 8 0.17
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.25
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTATAAGGCCCATTAGGCCCAAATC
Found at i:60101116 original size:29 final size:28
Alignment explanation
Indices: 60101059--60101167 Score: 123
Period size: 29 Copynumber: 3.9 Consensus size: 28
60101049 TACCTGTATC
* *
60101059 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATT-ATA
*
60101087 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACAT-TATA
*
60101116 TGGCCTATTAGGCCCAAATCACATTATA
1 TGGCCCATTAGGCCCAAATCACATTATA
* * *
60101144 AGGCCCGTTAGGCCC-AGTCACATT
1 TGGCCCATTAGGCCCAAATCACATT
60101168 CATAGTCATG
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 8 0.11
28 30 0.43
29 31 0.44
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCACATTATA
Found at i:60102136 original size:29 final size:29
Alignment explanation
Indices: 60102076--60102160 Score: 84
Period size: 28 Copynumber: 3.0 Consensus size: 29
60102066 GCCTATATCT
* * *
60102076 GGCCCATTAAGCCC-AATCATATTCATAT
1 GGCCCATTAGGCCCAAATCACATTCATAA
*
60102104 GGCCCATTAGGCCCAAATCACATTTATAA
1 GGCCCATTAGGCCCAAATCACATTCATAA
** * *
60102133 GGCCTGTTAGGCCC-AGTTACATTCATAA
1 GGCCCATTAGGCCCAAATCACATTCATAA
60102161 TCATGCTCAC
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 24 0.51
29 23 0.49
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
GGCCCATTAGGCCCAAATCACATTCATAA
Found at i:60104487 original size:27 final size:27
Alignment explanation
Indices: 60104457--60104743 Score: 367
Period size: 27 Copynumber: 10.6 Consensus size: 27
60104447 TTAGTTTATC
60104457 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
60104484 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
60104511 AAATCACCAAAATACTCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
60104538 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
60104565 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
60104592 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
60104619 AAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
60104646 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
60104673 AAACTATCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
60104700 AAATTACCAAAATATCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
60104727 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
60104744 TCGATCTGTA
Statistics
Matches: 219, Mismatches: 41, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 219 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:60104520 original size:54 final size:54
Alignment explanation
Indices: 60104450--60104771 Score: 405
Period size: 54 Copynumber: 6.0 Consensus size: 54
60104440 AAATACTTTA
*
60104450 GTTTATCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
* *
60104504 GTTTATAAAATCACCAAAATACTCCTGGTTTGTAAAATTACTAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
* * *
60104558 GTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTTT
1 GTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
* * *
60104612 GTTTATAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTG
1 GTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
* * * * * *
60104666 GTTTGTAAAACTATCAAAATACCCTTAGTTTGTAAAATTACCAAAATATCCC-TG
1 GTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATA-CCCTTG
* * * * * * * *
60104720 ATTTGTGAAATTACTAAAATA-CCCTCGATCTGTAAAATTATTGAAATACCCT
1 GTTTATAAAATTACCAAAATACCCCT-GGTTTGTAAAATTACTAAAATACCCT
60104772 CGACCTGTAA
Statistics
Matches: 233, Mismatches: 32, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
53 6 0.03
54 224 0.96
55 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (54 bp):
GTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
Found at i:60104842 original size:27 final size:27
Alignment explanation
Indices: 60104457--60104842 Score: 348
Period size: 27 Copynumber: 14.3 Consensus size: 27
60104447 TTAGTTTATC
* *
60104457 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * *
60104484 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
60104511 AAATCACCAAAATACTCC-TGGTTTGTA
1 AAATTACCAAAATAC-CCTTGATTTGTA
* * **
60104538 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
*
60104565 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
60104592 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TTGATTTGTA
* * *
60104619 AAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
60104646 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
60104673 AAACTATCAAAATACCCTT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
*
60104700 AAATTACCAAAATATCCC-TGATTTGTG
1 AAATTACCAAAATA-CCCTTGATTTGTA
* * *
60104727 AAATTACTAAAATACCCTCGATCTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*** * **
60104754 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*** * **
60104781 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
60104808 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
*
60104835 GAATTACC
1 AAATTACC
60104843 GTTTTACCCT
Statistics
Matches: 307, Mismatches: 44, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.02
27 292 0.95
28 8 0.03
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTGTA
Found at i:60104891 original size:27 final size:27
Alignment explanation
Indices: 60104861--60104967 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 27
60104851 CTCAATTTAC
*
60104861 AAAATTATCGAAATACTCCTGTAGGGT
1 AAAATTACCGAAATACTCCTGTAGGGT
*
60104888 AAAATTACCGAAATACTCTTGTAGGGT
1 AAAATTACCGAAATACTCCTGTAGGGT
* *
60104915 AGAATTACCGAAATAC-CCGTATAGGGT
1 AAAATTACCGAAATACTCC-TGTAGGGT
* * * *
60104942 AGAATTATCGCAATACCCCTGTAGGG
1 AAAATTACCGAAATACTCCTGTAGGG
60104968 CTGGGTGGGT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.01
27 67 0.96
28 2 0.03
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AAAATTACCGAAATACTCCTGTAGGGT
Found at i:60105115 original size:6 final size:6
Alignment explanation
Indices: 60105106--60105177 Score: 67
Period size: 6 Copynumber: 11.8 Consensus size: 6
60105096 TTTCTGTTAC
* * * *
60105106 CTGATA CTGATT CTGATT CTGATT CTGATT TTG-TCAC CTAATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT
60105155 CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGA-TT CTGAT
60105178 AATGTTTCTT
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
5 2 0.04
6 49 0.91
7 2 0.04
8 1 0.02
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:60105161 original size:37 final size:39
Alignment explanation
Indices: 60105086--60105168 Score: 125
Period size: 37 Copynumber: 2.2 Consensus size: 39
60105076 TACCTGATAT
* *
60105086 TGATTCTGATTTTCTGTTACCTGATACTGATTCTGATTC
1 TGATTCTGATTTTCTGTCACCTAATACTGATTCTGATTC
*
60105125 TGATTCTGA-TTT-TGTCACCTAATTCTGATTCTGATTC
1 TGATTCTGATTTTCTGTCACCTAATACTGATTCTGATTC
60105162 TGATTCT
1 TGATTCT
60105169 AGTTCTGATA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 29 0.71
38 3 0.07
39 9 0.22
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.49
Consensus pattern (39 bp):
TGATTCTGATTTTCTGTCACCTAATACTGATTCTGATTC
Found at i:60107159 original size:27 final size:27
Alignment explanation
Indices: 60107128--60107414 Score: 396
Period size: 27 Copynumber: 10.6 Consensus size: 27
60107118 TTAGTTTACT
60107128 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
60107155 AAATTACTAAAATA-CCCTCGGTTTATA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
60107182 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
60107209 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
60107236 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
60107263 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
60107290 AAATTACCAAAATACACCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
60107317 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
60107344 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
60107371 AAATTACCAAAATATCTCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
60107398 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
60107415 TCGACCTATA
Statistics
Matches: 225, Mismatches: 33, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
26 4 0.02
27 217 0.96
28 4 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:60107427 original size:54 final size:52
Alignment explanation
Indices: 60107150--60107494 Score: 214
Period size: 54 Copynumber: 6.4 Consensus size: 52
60107140 TACCCCTGGT
* * * * * **
60107150 TTGTAAAATTACTAAAATACCCTCGGTTTATAAAATCACCAAAATACCC-CTGGT
1 TTGTAAAATTACCAAAATACCCT-GATTTGTAAAATTA-TAAAATACCCTC-GAC
* ** * **
60107204 TTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-CTGGT
1 TTGTAAAATTACCAAAATACCC-TGATTTGTAAAATTA-TAAAATACCCTC-GAC
* * * **
60107258 TTGTAAAATTACTAAAATACCCTTTG-TTTATAAAATTACCAAAATACACCT-GGT
1 TTGTAAAATTACCAAAATACCC--TGATTTGTAAAATTA-TAAAATAC-CCTCGAC
* * *
60107312 TTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATA-CCCTGATTTGTAAAATTAT-AAAATACCCTCGA-C
* *
60107366 TTGTAAAATTACCAAAATATCTCTGATTTGTGAAATTACTAAAATACCCTCGAC
1 TTGTAAAATTACCAAAATA-CCCTGATTTGTAAAATTA-TAAAATACCCTCGAC
* * *** ** *
60107420 CTATAAAATTATTGAAATACCCTCGACCTGTAAAATTATTAAAATATCCTCGAC
1 TTGTAAAATTACCAAAATACCCT-GATTTGTAAAATTA-TAAAATACCCTCGAC
*
60107474 TTGTAAAATTACCAAAGTACC
1 TTGTAAAATTACCAAAATACC
60107495 ATTGATTTAC
Statistics
Matches: 246, Mismatches: 33, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
53 7 0.03
54 227 0.92
55 12 0.05
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (52 bp):
TTGTAAAATTACCAAAATACCCTGATTTGTAAAATTATAAAATACCCTCGAC
Found at i:60107428 original size:27 final size:27
Alignment explanation
Indices: 60107151--60107494 Score: 128
Period size: 27 Copynumber: 12.7 Consensus size: 27
60107141 ACCCCTGGTT
***
60107151 TGTAAAATTACTAAAATACCCTCGGTT
1 TGTAAAATTACTAAAATACCCTCGACC
* * * ***
60107178 TATAAAATCACCAAAATACCC-CTGGTT
1 TGTAAAATTACTAAAATACCCTC-GACC
* * ***
60107205 TGTAAAATTACCAAAATACCCTTGGTT
1 TGTAAAATTACTAAAATACCCTCGACC
** * ***
60107232 TACAAAATTACCAAAATACCC-CTGGTT
1 TGTAAAATTACTAAAATACCCTC-GACC
* **
60107259 TGTAAAATTACTAAAATACCCTTTG-TT
1 TGTAAAATTACTAAAATACCC-TCGACC
* * ***
60107286 TATAAAATTACCAAAATACACCT-GGTT
1 TGTAAAATTACTAAAATAC-CCTCGACC
* ***
60107313 TGTAAAATTACCAAAATACCC-CTGGTT
1 TGTAAAATTACTAAAATACCCTC-GACC
* **
60107340 TGTAAAATTA-TCAAAATACCC-CTAGTT
1 TGTAAAATTACT-AAAATACCCTCGA-CC
* * **
60107367 TGTAAAATTACCAAAATA-TCTCTGATT
1 TGTAAAATTACTAAAATACCCTC-GACC
*
60107394 TGTGAAATTACTAAAATACCCTCGACC
1 TGTAAAATTACTAAAATACCCTCGACC
* * *
60107421 TATAAAATTATTGAAATACCCTCGACC
1 TGTAAAATTACTAAAATACCCTCGACC
* * *
60107448 TGTAAAATTATTAAAATATCCTCGACT
1 TGTAAAATTACTAAAATACCCTCGACC
* *
60107475 TGTAAAATTACCAAAGTACC
1 TGTAAAATTACTAAAATACC
60107495 ATTGATTTAC
Statistics
Matches: 263, Mismatches: 39, Indels: 30
0.79 0.12 0.09
Matches are distributed among these distances:
26 5 0.02
27 251 0.95
28 7 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACTAAAATACCCTCGACC
Found at i:60107548 original size:27 final size:27
Alignment explanation
Indices: 60107398--60107549 Score: 99
Period size: 27 Copynumber: 5.6 Consensus size: 27
60107388 CTGATTTGTG
**
60107398 AAATTACTAAAATACCCTCGACCTATA
1 AAATTACCGAAATACCCTCGACCTATA
** *
60107425 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTACCGAAATACCCTCGACCTATA
*** * * *
60107452 AAATTATTAAAATATCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGACCTATA
* * ** *
60107479 AAATTACC-AAAGTACCATTGATTTACA
1 AAATTACCGAAA-TACCCTCGACCTATA
* *** *
60107506 GAATTACCGTTTTACCCTCGACCTACA
1 AAATTACCGAAATACCCTCGACCTATA
60107533 AAATTACCGAAATACCC
1 AAATTACCGAAATACCC
60107550 CTGTAGGGTA
Statistics
Matches: 97, Mismatches: 26, Indels: 4
0.76 0.20 0.03
Matches are distributed among these distances:
26 3 0.03
27 94 0.97
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGACCTATA
Found at i:60107564 original size:27 final size:27
Alignment explanation
Indices: 60107534--60108240 Score: 1017
Period size: 27 Copynumber: 26.3 Consensus size: 27
60107524 CGACCTACAA
60107534 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
60107561 AATTACCGTAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
60107588 AATTACGGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
60107615 AATTACCGAAATACCCCTGTAGGGTAC
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
60107642 AATTATCGCAATGCCCCTATGGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
60107669 AATTACAGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
60107696 AATTACAGAAATACCCCTGTATGGTAC
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
60107723 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
60107750 AATTACAAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
60107777 AATTACCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
60107804 AATTATCGCAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
60107831 AATTACCGAAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
60107857 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
60107884 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
60107911 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
60107938 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
60107965 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
60107992 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
60108019 AATTATCGAAATA-CCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
60108045 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
60108072 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
60108099 -ATTACCGAAATACCCCTGTAGGGTA-
1 AATTACCGAAATACCCCTGTAGGGTAG
60108124 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
60108151 AATTATCGCAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
60108178 AATTACCGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
60108205 AATTACTGAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
60108232 AATTACCGA
1 AATTACCGA
60108241 GATTGTGACA
Statistics
Matches: 605, Mismatches: 71, Indels: 8
0.88 0.10 0.01
Matches are distributed among these distances:
26 98 0.16
27 507 0.84
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:60109903 original size:39 final size:39
Alignment explanation
Indices: 60109849--60109992 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
60109839 GAATGTTCGA
60109849 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
60109888 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
60109927 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
60109966 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
60109993 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:60109939 original size:78 final size:79
Alignment explanation
Indices: 60109850--60110032 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
60109840 AATGTTCGAG
60109850 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
60109914 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
60109928 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
60109993 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
60110007 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
60110033 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:60111935 original size:22 final size:22
Alignment explanation
Indices: 60111883--60111943 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
60111873 TTAAAGCCTT
* *
60111883 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
60111905 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
60111927 CTGATTATGGCTGTGTG
1 CTGATTATGGCTCTGTG
60111944 GCAAACGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
21 1 0.03
22 30 0.94
23 1 0.03
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:60112136 original size:27 final size:27
Alignment explanation
Indices: 60112106--60112207 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
60112096 ATTCTGTTAA
*
60112106 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
* *
60112133 GTGGCTATGCTACAAATATCTG-TTCTG
1 GTGGCTTTGCCAC-AATATCTGTTTCTG
* * *
60112160 GTGGCTCTGCCACAATATCTGTATCTA
1 GTGGCTTTGCCACAATATCTGTTTCTG
* * *
60112187 GTGACTTTGTCACAACATCTG
1 GTGGCTTTGCCACAATATCTG
60112208 ATAACTGAGC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 8 0.13
27 47 0.76
28 7 0.11
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTGTTTCTG
Found at i:60112390 original size:31 final size:31
Alignment explanation
Indices: 60112352--60112411 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
60112342 ACATTCTGAT
60112352 TTTTGATTCTGTTACCTGATACTAATTCTAA
1 TTTTGATTCTGTTACCTGATACTAATTCTAA
*
60112383 TTTTGATTCTGTTACCTGATACTGATTCT
1 TTTTGATTCTGTTACCTGATACTAATTCT
60112412 GATTCTGTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.50
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACTAATTCTAA
Found at i:60112413 original size:6 final size:6
Alignment explanation
Indices: 60112344--60112457 Score: 56
Period size: 6 Copynumber: 18.3 Consensus size: 6
60112334 TTGCATTCAC
* * * * *
60112344 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTA ATTCTA ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
60112394 -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
60112444 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
60112458 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 14, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
5 6 0.07
6 59 0.72
7 14 0.17
8 3 0.04
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:60112424 original size:25 final size:25
Alignment explanation
Indices: 60112386--60112443 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
60112376 ATTCTAATTT
* *
60112386 TGATTCTGTTACCTGATACTGATTC
1 TGATTCTGTCACCTAATACTGATTC
*
60112411 TGATTCTGTCACCTAATTCTGATTC
1 TGATTCTGTCACCTAATACTGATTC
60112436 TGATTCTG
1 TGATTCTG
60112444 ATTCTAGTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.45
Consensus pattern (25 bp):
TGATTCTGTCACCTAATACTGATTC
Found at i:60117563 original size:14 final size:14
Alignment explanation
Indices: 60117544--60117573 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
60117534 CTAATCGATA
60117544 GCTTATGCTAGCAG
1 GCTTATGCTAGCAG
60117558 GCTTATGCTAGCAG
1 GCTTATGCTAGCAG
60117572 GC
1 GC
60117574 CCGTGAGTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (14 bp):
GCTTATGCTAGCAG
Found at i:60124873 original size:43 final size:42
Alignment explanation
Indices: 60124816--60124918 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 42
60124806 AATGCCAACG
* *
60124816 TCCCAAAC-GAGGTCTTACATGTAATCAAATATCGATGCCACTA
1 TCCCAAACAG-GGTCTTACACGAAATCAAATA-CGATGCCACTA
* * *
60124859 TCCCAAACAGGGTCTTACACGAAATTATATACGATGCCACTG
1 TCCCAAACAGGGTCTTACACGAAATCAAATACGATGCCACTA
*
60124901 TCCCAAACATGGTCTTAC
1 TCCCAAACAGGGTCTTAC
60124919 TCATAAATCT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
42 27 0.51
43 25 0.47
44 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (42 bp):
TCCCAAACAGGGTCTTACACGAAATCAAATACGATGCCACTA
Found at i:60124907 original size:42 final size:43
Alignment explanation
Indices: 60124807--60124918 Score: 131
Period size: 43 Copynumber: 2.6 Consensus size: 43
60124797 AGCTCGTACA
* *
60124807 ATGCCAAC-GTCCCAAAC-GAGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAAACAG-GGTCTTACACGAAATCAAATATCG
* * *
60124850 ATGCCACTATCCCAAACAGGGTCTTACACGAAATTATATA-CG
1 ATGCCACTGTCCCAAACAGGGTCTTACACGAAATCAAATATCG
*
60124892 ATGCCACTGTCCCAAACATGGTCTTAC
1 ATGCCACTGTCCCAAACAGGGTCTTAC
60124919 TCATAAATCT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
42 29 0.48
43 30 0.50
44 1 0.02
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (43 bp):
ATGCCACTGTCCCAAACAGGGTCTTACACGAAATCAAATATCG
Found at i:60129532 original size:40 final size:40
Alignment explanation
Indices: 60129473--60129760 Score: 353
Period size: 40 Copynumber: 7.2 Consensus size: 40
60129463 CAATTGAATG
* * * * * **
60129473 ATATCCGTGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
* * * *
60129513 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-CGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG-TT
* * *
60129553 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
* * *
60129593 AAATCCGGGCTAATACCTGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
*
60129633 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
*
60129673 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
* * * *
60129713 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
60129753 ATATCCGG
1 ATATCCGG
60129761 TTGTATTCCG
Statistics
Matches: 217, Mismatches: 29, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
40 216 1.00
41 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
Found at i:60131462 original size:55 final size:55
Alignment explanation
Indices: 60131378--60131488 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
60131368 GGAAATTAAG
60131378 TTTGGTATTGAGTTAGTTCCTGGTACTGCACCTATTTCGATCACTCTATATAGGA
1 TTTGGTATTGAGTTAGTTCCTGGTACTGCACCTATTTCGATCACTCTATATAGGA
60131433 TTTGGTATTGAGTTAGTTCCTGGTACTGCACCTATTTCGATCACTCTATATAGGA
1 TTTGGTATTGAGTTAGTTCCTGGTACTGCACCTATTTCGATCACTCTATATAGGA
60131488 T
1 T
60131489 GGCTCCGACA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.41
Consensus pattern (55 bp):
TTTGGTATTGAGTTAGTTCCTGGTACTGCACCTATTTCGATCACTCTATATAGGA
Found at i:60135566 original size:48 final size:48
Alignment explanation
Indices: 60135512--60135622 Score: 188
Period size: 48 Copynumber: 2.3 Consensus size: 48
60135502 GATATGTGAC
* *
60135512 CCCATGTAAGACCATGTCTGGGACAT-GACATTTGCATCGATCTACGAT
1 CCCATGTAAGACCATGTCTAGGACATAG-CATTGGCATCGATCTACGAT
60135560 CCCATGTAAGACCATGTCTAGGACATAGCATTGGCATCGATCTACGAT
1 CCCATGTAAGACCATGTCTAGGACATAGCATTGGCATCGATCTACGAT
60135608 CCCATGTAAGACCAT
1 CCCATGTAAGACCAT
60135623 ATCCGAGATA
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
48 59 0.98
49 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (48 bp):
CCCATGTAAGACCATGTCTAGGACATAGCATTGGCATCGATCTACGAT
Found at i:60135639 original size:48 final size:47
Alignment explanation
Indices: 60135512--60135644 Score: 151
Period size: 48 Copynumber: 2.8 Consensus size: 47
60135502 GATATGTGAC
* * * * *
60135512 CCCATGTAAGACCATGTCTGGGACATGACATTTGCATCGATCTACGAT
1 CCCATGTAAGACCATGTCCGAGATA-GGCATTGGCATCGATCTACGAT
* *
60135560 CCCATGTAAGACCATGTCTAGGACATA-GCATTGGCATCGATCTACGAT
1 CCCATGTAAGACCATGTC--CGAGATAGGCATTGGCATCGATCTACGAT
*
60135608 CCCATGTAAGACCATATCCGAGATACGGCATTGGCAT
1 CCCATGTAAGACCATGTCCGAGATA-GGCATTGGCAT
60135645 TCTACCATGT
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
46 5 0.07
48 64 0.89
50 3 0.04
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.25
Consensus pattern (47 bp):
CCCATGTAAGACCATGTCCGAGATAGGCATTGGCATCGATCTACGAT
Found at i:60143103 original size:48 final size:48
Alignment explanation
Indices: 60143019--60143476 Score: 292
Period size: 48 Copynumber: 9.7 Consensus size: 48
60143009 TTTGTGTGCT
60143019 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATATTATGAAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAAAGCC
*
60143065 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCATATTATGAAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAAAGCC
* * * *
60143113 AGTGTAAGAACATGTCTGGGACATGGCATC-GACAT-TGA-GACAAGAACT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGA-AAG--CC
* * * * * *
60143161 AATGTAAGA-CATGTCTGGGACAT-GCATCGTCC-TCGA-GACGTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT--ATTATGAAAGCC
* ** * *
60143207 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATAAGATG--TGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAAAGCC
* * * ** *
60143251 AGTGTAAGACCATGTCTGGGACATGGTATCGACACGTA-TA-GAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CATATTATGA-AAGCC
* * * * * *
60143299 AATGTAAGACCATGTCTGGGACAAGGCATCGG-TATGAATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT--AT-TATGAAAGCC
* * *
60143349 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATT-TCAATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-ATTATGAA-AGCC
* ** * * * *
60143398 AGTGTAAGACTATGTCTGAAACATGGGATC-GACTTGATGGT-TG--AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-AT--TATGAAAGCC
60143445 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
60143477 TACTATACCC
Statistics
Matches: 333, Mismatches: 51, Indels: 54
0.76 0.12 0.12
Matches are distributed among these distances:
44 10 0.03
45 18 0.05
46 62 0.19
47 66 0.20
48 107 0.32
49 30 0.09
50 37 0.11
51 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAAAGCC
Found at i:60150975 original size:46 final size:45
Alignment explanation
Indices: 60150924--60151048 Score: 155
Period size: 46 Copynumber: 2.7 Consensus size: 45
60150914 GAGACGAGAA
*
60150924 CTAGTGTAAGACATATCTGGGACATGCATCGGCCT-CGAGATGTAAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGT--G
*
60150970 CTAGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGATGTG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGTG
* * *
60151014 CCAGTGTATGACCATGTCTAGGACATTGCATCGGC
1 CTAGTGTAAGA-CATGTCTGGGACA-TGCATCGGC
60151049 ACATATAGAG
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
44 10 0.14
45 14 0.20
46 45 0.65
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (45 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGTG
Found at i:60158156 original size:19 final size:19
Alignment explanation
Indices: 60158132--60158183 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 19
60158122 GGAATTTTGT
60158132 TATTAGAACCCAACTTACC
1 TATTAGAACCCAACTTACC
*
60158151 TATTAG-ACCC--CTTTAGC
1 TATTAGAACCCAAC-TTACC
60158168 TATTAGAACCCAACTT
1 TATTAGAACCCAACTT
60158184 TTACACTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
16 1 0.04
17 10 0.36
18 8 0.29
19 8 0.29
20 1 0.04
ACGTcount: A:0.33, C:0.29, G:0.08, T:0.31
Consensus pattern (19 bp):
TATTAGAACCCAACTTACC
Found at i:60165409 original size:35 final size:35
Alignment explanation
Indices: 60165370--60165441 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
60165360 GAAAATTTTA
60165370 TACTAAGTTTCAAGATATGCCAACATGAATCATAG
1 TACTAAGTTTCAAGATATGCCAACATGAATCATAG
*
60165405 TACTATGTTTCAAGATATGCCAACATGAATCATAG
1 TACTAAGTTTCAAGATATGCCAACATGAATCATAG
60165440 TA
1 TA
60165442 TTTATATATG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (35 bp):
TACTAAGTTTCAAGATATGCCAACATGAATCATAG
Found at i:60167043 original size:23 final size:24
Alignment explanation
Indices: 60166999--60167043 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
60166989 CAAGTCCTAC
*
60166999 CCATCCAGCCTCTACACACCATCT
1 CCATCCAACCTCTACACACCATCT
*
60167023 CCATCCAACC-CTACACTCCAT
1 CCATCCAACCTCTACACACCAT
60167044 ATGGGGATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.27, C:0.51, G:0.02, T:0.20
Consensus pattern (24 bp):
CCATCCAACCTCTACACACCATCT
Found at i:60167405 original size:27 final size:27
Alignment explanation
Indices: 60167375--60167440 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
60167365 GAAAATCAGT
*
60167375 CATTTTA-CCTCACAGGGGTATTACAGA
1 CATTTTACCCT-ACAGAGGTATTACAGA
* * *
60167402 CATTTTACCCTACAGAGGTATTTCGGT
1 CATTTTACCCTACAGAGGTATTACAGA
60167429 CATTTTACCCTA
1 CATTTTACCCTA
60167441 TGGGGGTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 31 0.91
28 3 0.09
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (27 bp):
CATTTTACCCTACAGAGGTATTACAGA
Found at i:60167437 original size:54 final size:54
Alignment explanation
Indices: 60167373--60167538 Score: 151
Period size: 54 Copynumber: 3.1 Consensus size: 54
60167363 GGGAAAATCA
60167373 GTCATTTTA-CCTCACAGGGGTATTACAGACATTTTACCCTACA-GA-GGTATTTCG
1 GTCATTTTACCCT-ACAGGGGTATTACAGACATTTTACCC--CATGAGGGTATTTCG
** * * *
60167427 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCCATGAGGGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTACAGACATTTTACCCCATGAGGGTATTTCG
* * * * * ** *
60167481 GTCATTTTACACTA-TGAGGGTATTTCGGTCATTTTACCTTATGGGGGTATTTCG
1 GTCATTTTACCCTACAG-GGGTATTACAGACATTTTACCCCATGAGGGTATTTCG
60167535 GTCA
1 GTCA
60167539 CCATTTCGGC
Statistics
Matches: 98, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
52 2 0.02
53 3 0.03
54 90 0.92
55 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.38
Consensus pattern (54 bp):
GTCATTTTACCCTACAGGGGTATTACAGACATTTTACCCCATGAGGGTATTTCG
Found at i:60167448 original size:27 final size:27
Alignment explanation
Indices: 60167402--60167538 Score: 202
Period size: 27 Copynumber: 5.1 Consensus size: 27
60167392 GTATTACAGA
** *
60167402 CATTTTACCCTACAGAGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
60167429 CATTTTACCCTATGGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* *
60167456 CATTTTACCCCATGAGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* *
60167483 CATTTTACACTATGAGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
*
60167510 CATTTTACCTTATGGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
60167537 CA
1 CA
60167539 CCATTTCGGC
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (27 bp):
CATTTTACCCTATGGGGGTATTTCGGT
Found at i:60173770 original size:16 final size:16
Alignment explanation
Indices: 60173749--60173780 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
60173739 AGTTTCCTTG
60173749 TTTTGTTTTATGGCAT
1 TTTTGTTTTATGGCAT
*
60173765 TTTTGTTTTCTGGCAT
1 TTTTGTTTTATGGCAT
60173781 GTATAGGGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.09, G:0.19, T:0.62
Consensus pattern (16 bp):
TTTTGTTTTATGGCAT
Found at i:60177425 original size:46 final size:47
Alignment explanation
Indices: 60177371--60177540 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 47
60177361 GACGAGTGCT
* *
60177371 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGGGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAGATGTAAGCC
* * * *
60177417 AGTATAAGA-CATGTCTGGGACAT-GCATCGGCTACAAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCCT-CGAGATGTAAGCC
60177461 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAAGATG-ATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCG-AGATGTA-AGCC
*
60177510 AGTGTAAGACCATGTTTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
60177541 GCACTTTACC
Statistics
Matches: 105, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
44 10 0.10
45 17 0.16
46 38 0.36
47 8 0.08
48 1 0.01
49 31 0.30
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGAGATGTAAGCC
Found at i:60177533 original size:140 final size:140
Alignment explanation
Indices: 60177281--60177539 Score: 346
Period size: 140 Copynumber: 1.8 Consensus size: 140
60177271 TGAGCTAGTG
* * *
60177281 TAAGACATGTCTGGGACATGCATCGGCGACATTATGAGAGTGAGTGTAAGACCTTGTTTGGGACA
1 TAAGACATGTCTGGGACATGCATCGGCGACA-TATGAGAGTCAGTGTAAGACCATGTCTGGGACA
* * *
60177346 TGGCATCGGTATTGAGACGAGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGGGAC
65 TGGCATCGGCATCGAGACGAGTGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGGGAC
60177410 GTAAGCCAGTA
130 GTAAGCCAGTA
* *
60177421 TAAGACATGTCTGGGACATGCATCGGCTACA-A-GATGTGTCAGTGTAAGACCATGTCTGGGACA
1 TAAGACATGTCTGGGACATGCATCGGCGACATATGA-GAGTCAGTGTAAGACCATGTCTGGGACA
* * *
60177484 TGGCATCGGCCTCGAAGATGA-TAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
65 TGGCATCGGCATCG-AGACGAGT-GCCAGTGTAAGA-CATGTCTGGGACATGGCATC
60177540 GGCACTTTAC
Statistics
Matches: 103, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
137 2 0.02
138 37 0.36
139 16 0.16
140 43 0.42
141 5 0.05
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (140 bp):
TAAGACATGTCTGGGACATGCATCGGCGACATATGAGAGTCAGTGTAAGACCATGTCTGGGACAT
GGCATCGGCATCGAGACGAGTGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGGGACG
TAAGCCAGTA
Found at i:60180652 original size:15 final size:15
Alignment explanation
Indices: 60180629--60180670 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
60180619 TGATATTTTC
*
60180629 TTCTGGATTTCTTTA
1 TTCTGGATTTCTATA
60180644 TGT-TGGATTTCTATA
1 T-TCTGGATTTCTATA
60180659 TTCTGGATTTCT
1 TTCTGGATTTCT
60180671 CCGTTATGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.14, C:0.12, G:0.17, T:0.57
Consensus pattern (15 bp):
TTCTGGATTTCTATA
Found at i:60184706 original size:40 final size:40
Alignment explanation
Indices: 60184661--60184908 Score: 280
Period size: 40 Copynumber: 6.2 Consensus size: 40
60184651 CGGAATACAA
* *
60184661 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* *
60184701 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
60184741 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * * *
60184781 CCGGATTTAACAACTTGCACGAATGCCTTCGGATCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* ** * * * *
60184821 CCGGATGTAGTCTCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60184861 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
60184901 CCGGATAT
1 CCGGATAT
60184909 CATTCAATTG
Statistics
Matches: 178, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 178 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:60184885 original size:120 final size:120
Alignment explanation
Indices: 60184661--60184908 Score: 322
Period size: 120 Copynumber: 2.1 Consensus size: 120
60184651 CGGAATACAA
* *
60184661 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGATCTTAGCCCGGATAGAACGACTTGCACAAATG
* *
60184726 CCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTA-TTAGC
66 CCTTCGGGTCTTAACCCGGATAGAACGACTAGCACAAATGCCTTCGGG-ACTTAGC
* * * * *
60184781 CCGGATTTAACAACTTGCACGAATGCCTTCGGATCTTAGCCCGGAT-GTA-GTCTCTAGCACAAT
1 CCGGATATAACAACATGCACGAATGCCTTCGGATCTTAGCCCGGATAGAACGACT-T-GCACAAA
* ** * *
60184844 TGCCTTCGGGTCTTAACCCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
64 TGCCTTCGGGTCTTAACCCGGATAGAACGACTAGCACAAATGCCTTCGGGACTTAGC
60184901 CCGGATAT
1 CCGGATAT
60184909 CATTCAATTG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
118 3 0.03
119 4 0.04
120 103 0.94
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (120 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGATCTTAGCCCGGATAGAACGACTTGCACAAATG
CCTTCGGGTCTTAACCCGGATAGAACGACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:60193580 original size:17 final size:17
Alignment explanation
Indices: 60193558--60193592 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
60193548 GGTGCCATCT
60193558 TAATACATTACAACATA
1 TAATACATTACAACATA
60193575 TAATACATTACAACATA
1 TAATACATTACAACATA
60193592 T
1 T
60193593 GACCAACATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.31
Consensus pattern (17 bp):
TAATACATTACAACATA
Found at i:60196440 original size:40 final size:40
Alignment explanation
Indices: 60196395--60196561 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
60196385 CGGAATATAA
60196395 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
60196435 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
60196475 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60196515 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
60196554 CCGGATAT
1 CCGGATAT
60196562 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60202753 original size:50 final size:48
Alignment explanation
Indices: 60202633--60202769 Score: 193
Period size: 49 Copynumber: 2.8 Consensus size: 48
60202623 ATGGAGTAAG
* * *
60202633 GTGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATCTTC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATATTC
* *
60202681 GAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATTC
1 G-TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTAT--CATATTC
*
60202732 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTAGC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
60202770 CCACAATAAC
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
48 1 0.01
49 36 0.46
50 35 0.44
51 7 0.09
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (48 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATATTC
Found at i:60212299 original size:22 final size:22
Alignment explanation
Indices: 60212274--60212316 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
60212264 TTATAGCATG
60212274 CTACGCTCCTTGTCCAGCACTA
1 CTACGCTCCTTGTCCAGCACTA
*
60212296 CTACGCTCCTTGTCCGGCACT
1 CTACGCTCCTTGTCCAGCACT
60212317 CTTTGAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.14, C:0.42, G:0.16, T:0.28
Consensus pattern (22 bp):
CTACGCTCCTTGTCCAGCACTA
Found at i:60226189 original size:33 final size:33
Alignment explanation
Indices: 60226144--60226206 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
60226134 GATTAAAGAG
*
60226144 TAAATTAGTCATTTCTATTAAATATTTTTTTAA
1 TAAATTAATCATTTCTATTAAATATTTTTTTAA
60226177 TAAATTAATCATTTCTATTAAATATTTTTT
1 TAAATTAATCATTTCTATTAAATATTTTTT
60226207 CCATTTGTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.56
Consensus pattern (33 bp):
TAAATTAATCATTTCTATTAAATATTTTTTTAA
Found at i:60229128 original size:2 final size:2
Alignment explanation
Indices: 60229123--60229158 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
60229113 TTTTTTATTT
60229123 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60229159 CACATAATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:60229758 original size:2 final size:2
Alignment explanation
Indices: 60229751--60229800 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
60229741 ATTATCTGTT
*
60229751 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60229793 TA TA TA TA
1 TA TA TA TA
60229801 ATTTACCTAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:60230087 original size:19 final size:19
Alignment explanation
Indices: 60230063--60230100 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
60230053 TTGAGATTGC
60230063 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
*
60230082 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
60230101 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:60232233 original size:24 final size:24
Alignment explanation
Indices: 60232206--60232259 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
60232196 TTTCTTTCCT
*
60232206 TTGCATT-CATCCCATGCATTTGCA
1 TTGCATTGCATCACATGCA-TTGCA
*
60232230 TTGCATTGCATCATATGCATTGCA
1 TTGCATTGCATCACATGCATTGCA
60232254 TTGCAT
1 TTGCAT
60232260 CATTTGCATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 18 0.67
25 9 0.33
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (24 bp):
TTGCATTGCATCACATGCATTGCA
Found at i:60232248 original size:19 final size:19
Alignment explanation
Indices: 60232226--60232269 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
60232216 CCCATGCATT
60232226 TGCATTGCATTGCATCATA
1 TGCATTGCATTGCATCATA
*
60232245 TGCATTGCATTGCATCATT
1 TGCATTGCATTGCATCATA
60232264 TGCATT
1 TGCATT
60232270 AGATTTTCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41
Consensus pattern (19 bp):
TGCATTGCATTGCATCATA
Found at i:60236398 original size:88 final size:88
Alignment explanation
Indices: 60236249--60236484 Score: 361
Period size: 88 Copynumber: 2.7 Consensus size: 88
60236239 AGCTGAAGAT
* * *
60236249 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGTAGATCGAAGACATAGCTAATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCT
*
60236314 TTCACGTGTTTACGTTAAAGCAG
66 TTCACGTGTTTACGTTAAAGCAA
60236337 ATCCAAGATGATTTGGCATCTCTGTATCAGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCT
*
60236402 TTCACGTGTTTACGTTGAAGCAA
66 TTCACGTGTTTACGTTAAAGCAA
* * ** *
60236425 ATCCAAGATGATTTGGCATCTCTGTAGC-GGTAAAGAGCAGATCGAAG--ATAGCAGATTTGG
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCAGGGAGCAGATCGAAGACATAGCTGATTTGG
60236485 TGTCTCTATA
Statistics
Matches: 138, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
85 12 0.09
87 16 0.12
88 110 0.80
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (88 bp):
ATCCAAGATGATTTGGCATCTCTGTATCAGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCT
TTCACGTGTTTACGTTAAAGCAA
Found at i:60236491 original size:44 final size:44
Alignment explanation
Indices: 60236434--60237105 Score: 651
Period size: 44 Copynumber: 15.1 Consensus size: 44
60236424 AATCCAAGAT
* ***
60236434 GATTTGGCATCTCTGTAGCGGTAAAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
* * *
60236478 GATTTGGTGTCTCTATAGCGGCGGAGAGCAGATTGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
*
60236522 GATTTGGCGTCTCTGTAGCGGTGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
* * * *
60236566 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGCAGCAGAGAGCAGATCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAG-ATC-GA-AG-ATAGCA
* ** * * ** * * *
60236614 AAGATAGCAGATTTGGCGTCTCT-GTAGCGGCG-G-AGAGCAGATCGA-AGATAACA
1 GATTTGGC-G---T--C-TCTGTAGCGGCGGAGAGCAGATC-GA-AGATAG----CA
* * * * *
60236667 GATTTGGTGTCTCTGTAGCGACGAAGAGCAGATCGAATATAGTA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
*
60236711 GATTTGGCGTCTCTGTAGCGGCGGACAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
*
60236755 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
* * * *
60236799 GATTTGGCGCCTCTGTAGTGGCAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
*
60236843 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
*
60236887 G-TTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
* * * *
60236926 GATTTGGCATCTCTGTAGCGGCGAAGAGCAGATCGAAGATAACG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
* * * *
60236970 GATTTGGCGTCTCTGTAGCAGCAGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
* * *
60237014 GATTTGGCGTCTCTGTAGCGGCGGAAAGCAGATCGAAGATAACG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
* ** * * *
60237058 GATTTAGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTA-GCGGCGGAGAGCAGATCGAAGATAGCA
60237103 GAT
1 GAT
60237106 ATCGCCTTCC
Statistics
Matches: 520, Mismatches: 83, Indels: 49
0.80 0.13 0.08
Matches are distributed among these distances:
39 1 0.00
40 37 0.07
43 37 0.07
44 359 0.69
45 24 0.05
46 6 0.01
47 8 0.02
48 13 0.03
49 6 0.01
50 1 0.00
51 7 0.01
52 4 0.01
53 6 0.01
54 7 0.01
55 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.22
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
Found at i:60236571 original size:132 final size:132
Alignment explanation
Indices: 60236434--60237074 Score: 808
Period size: 132 Copynumber: 4.8 Consensus size: 132
60236424 AATCCAAGAT
* * * * *
60236434 GATTTGGCATCTCTGTAGCGGTAAAGAGCAGATCGAAGATAGCAGATTTGGTGTCTCTATAGCGG
1 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGCGG
* * * *
60236499 CGGAGAGCAGATTGAAGATAGCAGATTTGGCGTCTCTGTAGCGGTGGAGAGCAGATCGAAGATAG
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAG
60236564 CA
131 CA
* *
60236566 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGCAGCAGAGAGCAGATCAAAGATAGCAGATTTGGC
1 GATTTGGCGTCTCTGT----------AGC-G--GCAGAGAGCAGATCGAAGATAGCAGATTTGGC
* *
60236631 GTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTAGCGACGAAGAGC
53 GTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGAAGAGC
* *
60236696 AGATCGAATATAGTA
118 AGATCGAAGATAGCA
* *
60236711 GATTTGGCGTCTCTGTAGCGGCGGACAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGCGG
* * * *
60236776 CGGAGAGCAGATCAAAGATAGCAGATTTGGCGCCTCTGTAGTGGC-AGAGAGCAGATCGAAGATA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGA-AGAGCAGATCGAAGATA
*
60236840 GTA
130 GCA
* *
60236843 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAG-TTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGCGG
* * *
60236907 CGAAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCGGCGAAGAGCAGATCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAG
*
60236968 CG
131 CA
* * *
60236970 GATTTGGCGTCTCTGTAGCAGCAGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGCGG
* * *
60237035 CGGAAAGCAGATCGAAGATAACGGATTTAGCGTCTCTGTA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA
60237075 TTAGACGGGG
Statistics
Matches: 448, Mismatches: 41, Indels: 40
0.85 0.08 0.08
Matches are distributed among these distances:
127 78 0.17
128 37 0.08
131 37 0.08
132 174 0.39
134 1 0.00
135 3 0.01
142 3 0.01
143 1 0.00
145 114 0.25
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.22
Consensus pattern (132 bp):
GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGCGG
CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAG
CA
Found at i:60236611 original size:57 final size:57
Alignment explanation
Indices: 60236545--60236653 Score: 200
Period size: 57 Copynumber: 1.9 Consensus size: 57
60236535 TGTAGCGGTG
*
60236545 GAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGCAGCA
1 GAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGCAGCA
*
60236602 GAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAG
1 GAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTAGCGGCGGAGAGCAG
60236654 ATCGAAGATA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.29, C:0.18, G:0.36, T:0.17
Consensus pattern (57 bp):
GAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGCAGCA
Found at i:60237372 original size:8 final size:7
Alignment explanation
Indices: 60237342--60237371 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
60237332 AATACAACCC
60237342 AAAATAA
1 AAAATAA
60237349 AAAATAA
1 AAAATAA
60237356 AAAATAA
1 AAAATAA
60237363 ATAAATAA
1 A-AAATAA
60237371 A
1 A
60237372 TGAAGAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
AAAATAA
Found at i:60237689 original size:2 final size:2
Alignment explanation
Indices: 60237669--60237714 Score: 65
Period size: 2 Copynumber: 23.0 Consensus size: 2
60237659 TTCTTTATTT
* * *
60237669 TA TA TA CA TA CA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60237711 TA TA
1 TA TA
60237715 CACATAATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:60238113 original size:2 final size:2
Alignment explanation
Indices: 60238106--60238130 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
60238096 TATGCACATA
60238106 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
60238131 CATTTTTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60238319 original size:2 final size:2
Alignment explanation
Indices: 60238312--60238343 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
60238302 TCTGTTTATG
*
60238312 TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60238344 ATTTACCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:60238739 original size:6 final size:7
Alignment explanation
Indices: 60238721--60238746 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
60238711 CACTCCCTTT
60238721 TAAAAAA
1 TAAAAAA
60238728 TAAAAAA
1 TAAAAAA
60238735 TAAAAAA
1 TAAAAAA
60238742 TAAAA
1 TAAAA
60238747 TTTCAAAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAAAAA
Found at i:60242210 original size:19 final size:19
Alignment explanation
Indices: 60242186--60242277 Score: 136
Period size: 19 Copynumber: 5.0 Consensus size: 19
60242176 AAATCATATC
60242186 ATCTAAGATTGCATATCAT
1 ATCTAAGATTGCATATCAT
60242205 ATCTAAGATTGCA-ATCAT
1 ATCTAAGATTGCATATCAT
60242223 ATCTAAGATTG--TATCAT
1 ATCTAAGATTGCATATCAT
*
60242240 ATCTAAGATTGCATATCAC
1 ATCTAAGATTGCATATCAT
* *
60242259 ATTTAAGATTGTATATCAT
1 ATCTAAGATTGCATATCAT
60242278 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
ATCTAAGATTGCATATCAT
Found at i:60242222 original size:35 final size:35
Alignment explanation
Indices: 60242180--60242277 Score: 119
Period size: 35 Copynumber: 2.7 Consensus size: 35
60242170 ATTACAAAAT
60242180 CATATCATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATCTAAGATTG-ATATCATATCTAAGATTG
60242216 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATC--ATCTAAGATTGATATCATATCTAAGATTG
*
60242251 CATATCACATTTAAGATTGTATATCAT
1 CATAT--CATCTAAGATTG-ATATCAT
60242278 TGAAGATTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 12
0.81 0.01 0.18
Matches are distributed among these distances:
35 22 0.41
36 14 0.26
37 11 0.20
38 7 0.13
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (35 bp):
CATATCATCTAAGATTGATATCATATCTAAGATTG
Found at i:60242256 original size:14 final size:15
Alignment explanation
Indices: 60242201--60242256 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
60242191 AGATTGCATA
60242201 TCATATCTAAGATTG
1 TCATATCTAAGATTG
60242216 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
60242234 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
60242251 -CATATC
1 TCATATC
60242257 ACATTTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:60242283 original size:17 final size:16
Alignment explanation
Indices: 60242181--60242285 Score: 52
Period size: 17 Copynumber: 5.9 Consensus size: 16
60242171 TTACAAAATC
*
60242181 ATATCATCTAAGATTGC
1 ATATCAT-TAAGATTGT
*
60242198 ATATCATATCTAAGATTGC
1 ATATC--AT-TAAGATTGT
60242217 A-ATCATATCTAAGATTGT
1 ATATC--AT-TAAGATTGT
*
60242235 ATCAT-ATCTAAGATTGC
1 AT-ATCAT-TAAGATTGT
60242252 ATATCACATTTAAGATTGT
1 ATAT--CA-TTAAGATTGT
60242271 ATATCATTGAAGATT
1 ATATCATT-AAGATT
60242286 ATATTTCCAT
Statistics
Matches: 76, Mismatches: 3, Indels: 18
0.78 0.03 0.19
Matches are distributed among these distances:
16 4 0.05
17 26 0.34
18 17 0.22
19 26 0.34
20 3 0.04
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.38
Consensus pattern (16 bp):
ATATCATTAAGATTGT
Found at i:60242679 original size:45 final size:45
Alignment explanation
Indices: 60242624--60242897 Score: 223
Period size: 45 Copynumber: 6.1 Consensus size: 45
60242614 GGAAGGCGAT
* *
60242624 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
60242669 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* ** * * * *
60242714 ATTTACT-TCTTCAATTTGCTCCTCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * * *
60242758 ATCTGTTATCTCCAATTTTCTCCCCGTTTAATACAAAGATGTCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * * *
60242803 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAA
* * *
60242848 ATCTGCTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
60242895 ATC
1 ATC
60242898 ATCTTGGATC
Statistics
Matches: 183, Mismatches: 37, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
43 6 0.03
44 42 0.23
45 103 0.56
46 1 0.01
47 19 0.10
48 5 0.03
49 7 0.04
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:60242969 original size:78 final size:78
Alignment explanation
Indices: 60242840--60243071 Score: 358
Period size: 78 Copynumber: 3.0 Consensus size: 78
60242830 TAAACACATG
* * *
60242840 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCTTGG
1 AAGGTCAGATATGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
*
60242905 ATCTGCTTCAATA
66 ATATGCTTCAATA
* * *
60242918 AAGGTCCA-ATATGTTGTGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCTAAATCATCTTG
1 AAGGT-CAGATATGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
*
60242982 GATATGCTTCAATG
65 GATATGCTTCAATA
*
60242996 AAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
1 AAGGTCAGATATGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
*
60243061 ATTTGCTTCAA
66 ATATGCTTCAA
60243072 CGTAAACACG
Statistics
Matches: 139, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
77 2 0.01
78 135 0.97
79 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
AAGGTCAGATATGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
ATATGCTTCAATA
Found at i:60243166 original size:87 final size:87
Alignment explanation
Indices: 60243012--60243488 Score: 792
Period size: 87 Copynumber: 5.5 Consensus size: 87
60243002 AGATCTGCTG
* * * *
60243012 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATTTGCTTCAACGTAA
1 TGTCTTCGATCTGCTCCCTG-CCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAA
60243077 ACACGTGAAAGCCAAATCAGCTA
65 ACACGTGAAAGCCAAATCAGCTA
* *
60243100 TATCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGCAAA
1 TGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAA
* *
60243165 CAAGTGAAAACCAAATCAGCTA
66 CACGTGAAAGCCAAATCAGCTA
* *
60243187 TGTCCTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGCAAA
1 TGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAA
*
60243252 CACGTGAAAGCGAAATCAGCTA
66 CACGTGAAAGCCAAATCAGCTA
* *
60243274 TGTCTTCGATCTGCTCCTTGCCAATACAGAGACGTCAAATCATCTTAGATTTGCTTCAACGTAAA
1 TGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAA
*
60243339 CACGTGAAAGCCAAATCAACTA
66 CACGTGAAAGCCAAATCAGCTA
*
60243361 TGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAAGGTAAA
1 TGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAA
60243426 CACGTGAAAGCCAAATCAGCTA
66 CACGTGAAAGCCAAATCAGCTA
* *
60243448 TGTCCTCGATCTGCTCCCTGCCAATACAGAGACTCCAAATC
1 TGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATC
60243489 TGCTGTCTTT
Statistics
Matches: 364, Mismatches: 25, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
87 346 0.95
88 18 0.05
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (87 bp):
TGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAA
CACGTGAAAGCCAAATCAGCTA
Found at i:60243505 original size:44 final size:44
Alignment explanation
Indices: 60243453--60243620 Score: 248
Period size: 44 Copynumber: 3.8 Consensus size: 44
60243443 AGCTATGTCC
* * *
60243453 TCGATCTGCTCCCTGCCAATACAGAGACT-CCAAATCTGCTGTCT
1 TCGATCTGCTCTCTGCCAATACAGAGA-TGCCAAATCTGTTATCT
* *
60243497 TTGATCTGCTCTCTGCCAATATAGAGATGCCAAATCTGTTATCT
1 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTATCT
* *
60243541 TCAATCTGCTCTCTGCTAATACAGAGATGCCAAATCTGTTATCT
1 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTATCT
*
60243585 TCGATCTGCTCTCTGACAATACAGAGATGCCAAATC
1 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC
60243621 ATCTTGGATC
Statistics
Matches: 111, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
43 1 0.01
44 110 0.99
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.31
Consensus pattern (44 bp):
TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTATCT
Found at i:60250247 original size:40 final size:40
Alignment explanation
Indices: 60250202--60250331 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
60250192 CGGAATATAA
60250202 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
60250242 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
60250282 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
60250322 CCGGATATAA
1 CCGGATATAA
60250332 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60250352 original size:80 final size:80
Alignment explanation
Indices: 60250218--60250367 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
60250208 ATAACCACGT
* * *
60250218 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
60250283 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** ** *
60250298 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCATTAACGTCTTCGGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAACGCCTTCGGGGCTTAGC
60250362 CCGGAT
65 CCGGAT
60250368 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 58 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:60259056 original size:37 final size:37
Alignment explanation
Indices: 60259003--60259124 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
60258993 TATAAAAGAA
*
60259003 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
60259040 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
60259077 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
60259114 GTCTCACCCGG
1 GTCTTACCCGG
60259125 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:60259281 original size:49 final size:49
Alignment explanation
Indices: 60259226--60259489 Score: 456
Period size: 49 Copynumber: 5.4 Consensus size: 49
60259216 TTTTACATTA
*
60259226 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
60259275 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
60259324 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
60259373 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* * * *
60259422 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* *
60259471 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
60259490 CATATATGTA
Statistics
Matches: 208, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 208 1.00
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
Found at i:60262255 original size:40 final size:40
Alignment explanation
Indices: 60262210--60262339 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
60262200 CGGAATATAA
60262210 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
60262250 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
60262290 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
60262330 CCGGATATAA
1 CCGGATATAA
60262340 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60262360 original size:80 final size:80
Alignment explanation
Indices: 60262226--60262375 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
60262216 ATAACCACGT
* * *
60262226 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
60262291 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** ** *
60262306 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCATTAACGTCTTCGGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAACGCCTTCGGGGCTTAGC
60262370 CCGGAT
65 CCGGAT
60262376 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 58 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:60266649 original size:22 final size:21
Alignment explanation
Indices: 60266614--60266689 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
60266604 AAAGGATATC
* *
60266614 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
60266635 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
60266658 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
60266677 TGC-AATCATATCT
1 TACAAATCATATCT
60266690 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:60266674 original size:19 final size:19
Alignment explanation
Indices: 60266650--60266740 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
60266640 AATCATATCT
60266650 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
60266669 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
60266687 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
60266704 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
*
60266723 TCTAAGATTGTATATCAT
1 TCTAAGATTGCATATCAT
60266741 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:60266706 original size:35 final size:36
Alignment explanation
Indices: 60266650--60266735 Score: 138
Period size: 35 Copynumber: 2.4 Consensus size: 36
60266640 AATCATATCT
*
60266650 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCATATCACA
60266687 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
60266723 TCTAAGATTGTAT
1 TCTAAGATTGTAT
60266736 ATCATTGAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
35 19 0.40
36 18 0.38
37 10 0.21
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGTATCATATCTAAGATTGCATATCACA
Found at i:60266719 original size:14 final size:15
Alignment explanation
Indices: 60266664--60266719 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
60266654 AGATTGCATA
60266664 TCATATCTAAGATTG
1 TCATATCTAAGATTG
60266679 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
60266697 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
60266714 -CATATC
1 TCATATC
60266720 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:60266893 original size:21 final size:20
Alignment explanation
Indices: 60266855--60266894 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
60266845 GAACTTGGAC
**
60266855 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
60266875 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
60266895 TCTGGGCCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:60279733 original size:19 final size:17
Alignment explanation
Indices: 60279690--60279736 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 17
60279680 GAGAAAAACC
60279690 TTAAAAAATATTTAAAA
1 TTAAAAAATATTTAAAA
60279707 TTGCAAAAAATCATTTTAAAA
1 TT--AAAAAAT-A-TTTAAAA
60279728 TTAAAAAAT
1 TTAAAAAAT
60279737 TACAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.08
19 14 0.54
20 1 0.04
21 9 0.35
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (17 bp):
TTAAAAAATATTTAAAA
Found at i:60279734 original size:20 final size:19
Alignment explanation
Indices: 60279692--60279735 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
60279682 GAAAAACCTT
*
60279692 AAAAAATATTTAAAATTGC
1 AAAAAATATTTAAAATTGA
60279711 AAAAAATCATTTTAAAATT-A
1 AAAAAAT-A-TTTAAAATTGA
60279731 AAAAA
1 AAAAA
60279736 TTACAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 7 0.32
20 6 0.27
21 9 0.41
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (19 bp):
AAAAAATATTTAAAATTGA
Found at i:60280022 original size:19 final size:19
Alignment explanation
Indices: 60279983--60280049 Score: 57
Period size: 19 Copynumber: 3.3 Consensus size: 19
60279973 AATTTTTTAA
60279983 TTATTTAAATAATAAAAATAAT
1 TTATTTAAAT-AT--AAATAAT
60280005 GTTATTTAAAT-TAAATAA-
1 -TTATTTAAATATAAATAAT
*
60280023 TCATTTAAATCATAAATAAT
1 TTATTTAAAT-ATAAATAAT
60280043 ATTATTT
1 -TTATTT
60280050 TATTATTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 9 0.24
19 13 0.34
21 6 0.16
23 10 0.26
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (19 bp):
TTATTTAAATATAAATAAT
Found at i:60280030 original size:17 final size:18
Alignment explanation
Indices: 60280008--60280042 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
60279998 AAATAATGTT
60280008 ATTTAAAT-TAAATAATC
1 ATTTAAATATAAATAATC
60280025 ATTTAAATCATAAATAAT
1 ATTTAAAT-ATAAATAAT
60280043 ATTATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (18 bp):
ATTTAAATATAAATAATC
Found at i:60280131 original size:25 final size:24
Alignment explanation
Indices: 60280092--60280138 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
60280082 GATTTATCAC
60280092 TTAAAATTTTAAAATATTAAAAATA
1 TTAAAATTTTAAAAT-TTAAAAATA
60280117 TTAAAATTTCT-AAATTTAAAAA
1 TTAAAATTT-TAAAATTTAAAAA
60280139 AAACTTAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 7 0.33
25 13 0.62
26 1 0.05
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
TTAAAATTTTAAAATTTAAAAATA
Found at i:60286259 original size:3 final size:3
Alignment explanation
Indices: 60286244--60286286 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
60286234 TTTGGGAATA
* *
60286244 AAG AAG GAG AAG AAG AAG GA- AAG AAG -AG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
60286287 GAGGCCGGCA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 3 0.09
3 31 0.91
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:60286274 original size:19 final size:20
Alignment explanation
Indices: 60286243--60286289 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 20
60286233 TTTTGGGAAT
60286243 AAAGAAGGAGAAGAAGAAGG
1 AAAGAAGGAGAAGAAGAAGG
60286263 AAAGAA-GAGAAGAAGAA-G
1 AAAGAAGGAGAAGAAGAAGG
60286281 -AAGAAGGAG
1 AAAGAAGGAG
60286290 GCCGGCACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.19
18 4 0.15
19 11 0.42
20 6 0.23
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (20 bp):
AAAGAAGGAGAAGAAGAAGG
Found at i:60286328 original size:24 final size:23
Alignment explanation
Indices: 60286301--60286349 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
60286291 CCGGCACTTG
60286301 AGAGAAGAAAAAAGAAAAAGAAAA
1 AGAGAAGAAAAAAGAAAAA-AAAA
* * *
60286325 AGAGAAGGAGAAGGAAAAAAAAA
1 AGAGAAGAAAAAAGAAAAAAAAA
60286348 AG
1 AG
60286350 GTAAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (23 bp):
AGAGAAGAAAAAAGAAAAAAAAA
Found at i:60287006 original size:12 final size:13
Alignment explanation
Indices: 60286991--60287026 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
60286981 ATTTTTTGCT
60286991 AAAATAATATA-A
1 AAAATAATATACA
*
60287003 AAAATAAAATACA
1 AAAATAATATACA
60287016 AAAATAATATA
1 AAAATAATATA
60287027 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAATAATATACA
Found at i:60287036 original size:149 final size:151
Alignment explanation
Indices: 60286839--60287408 Score: 821
Period size: 149 Copynumber: 3.8 Consensus size: 151
60286829 GAGTTTTTTG
* * * * * *
60286839 CTAAAATAATATAAAAAAATAAAATATGAAAGTAGTATATTTTAAAAAATAAAATTCGAAAAT-A
1 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAATAA
* *
60286903 AAAAATACGAATAAAGTGGC-AAAGTTAGGGTTATTTATTAAATTAATATAAAAAAAACTTAAAT
66 AAAAATACGAATAAAGT-GCTAAAATCAGGGTTATTTATTAAATTAATATAAAAAAAACTTAAAT
* * * *
60286967 AATACATTTGAATCATTTTTTG
130 AATACATTTGAAACATTATGTA
* *
60286989 CTAAAATAATATAAA-AAATAAAATACAAAAATAATATATTTTAAAAAATAATATACGAAAAT-A
1 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAATAA
* * *
60287052 AAAAATACAAATAAAGTGCTAAAATCAGGGTTATTTATTAAA--AATATAAAAAATACCTAAATA
66 AAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAATTAATATAAAAAAAACTTAAATA
60287115 ATACATTTGAAACATTATGTA
131 ATACATTTGAAACATTATGTA
* *
60287136 CCAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATATGAAAATAA
1 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAATAA
* ** *
60287201 AAAAATACGAATAAAGTGCTAAAATCAGGGTTGTTTATTAAAAAAATAT-AAAAACACTTAAATA
66 AAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAATTAATATAAAAAAAACTTAAATA
60287265 ATACATTTGAAACATTATGTA
131 ATACATTTGAAACATTATGTA
*
60287286 CTAAAATAATATAAAGAAATAAAATATGAAAATAATATATTTTAAAAAATAAGATACGAAAAATA
1 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACG-AAAAT-
* * *
60287351 AAAAAAATACGAAGAAAGTGTTAAAATTAGGGTTATTTATTAAATTAATATAAAAAAA
64 AAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAATTAATATAAAAAAA
60287409 CTTGTATAGG
Statistics
Matches: 379, Mismatches: 33, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
147 50 0.13
148 46 0.12
149 119 0.31
150 104 0.27
151 10 0.03
152 45 0.12
153 5 0.01
ACGTcount: A:0.58, C:0.05, G:0.08, T:0.29
Consensus pattern (151 bp):
CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAATAA
AAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAATTAATATAAAAAAAACTTAAATA
ATACATTTGAAACATTATGTA
Found at i:60287178 original size:297 final size:301
Alignment explanation
Indices: 60286841--60287407 Score: 842
Period size: 297 Copynumber: 1.9 Consensus size: 301
60286831 GTTTTTTGCT
* * *
60286841 AAAATAATATAAAAAAATAAAATATGAAAGTAGTATATTTTAAAAAATAAAAT-TCGAAAAT-AA
1 AAAATAATATAAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAAAATAT-GAAAATAAA
* * **
60286904 AAAATACGAATAAAGTGGC-AAAGTTAGGGTTATTTATTAAATTAATATAAAAAAAACTTAAATA
65 AAAATACGAATAAAGT-GCTAAAATCAGGGTTATTTATTAAAAAAATAT-AAAAAAACTTAAATA
* * * *
60286968 ATACATTTGAATCATTTTTTGCTAAAATAATATAAA-AAATAAAATACAAAAATAATATATTTTA
128 ATACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAAATACAAAAATAATATATTTTA
* *
60287032 AAAAATAATATACG-AAAAT-AAAAAATACAAATAAAGTGCTAAAATCAGGGTTATTTATTAAA-
193 AAAAATAAGATACGAAAAATAAAAAAATACAAAGAAAGTGCTAAAATCAGGGTTATTTATTAAAT
60287094 AATATAAAAAATACCTAAATAATACATTTGAAACATTATGTACC
258 AATATAAAAAATACCTAAATAATACATTTGAAACATTATGTACC
* *
60287138 AAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATATGAAAATAAAA
1 AAAATAATATAAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAAAATATGAAAATAAAA
* *
60287203 AAATACGAATAAAGTGCTAAAATCAGGGTTGTTTATTAAAAAAATATAAAAACACTTAAATAATA
66 AAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAAACTTAAATAATA
**
60287268 CATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAAATATGAAAATAATATATTTTAAAA
131 CATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAAATACAAAAATAATATATTTTAAAA
* * *
60287333 AATAAGATACGAAAAATAAAAAAAATACGAAGAAAGTGTTAAAATTAGGGTTATTTATTAAATTA
196 AATAAGATACGAAAAAT-AAAAAAATACAAAGAAAGTGCTAAAATCAGGGTTATTTATTAAA-TA
60287398 ATATAAAAAA
259 ATATAAAAAA
60287408 ACTTGTATAG
Statistics
Matches: 239, Mismatches: 22, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
297 102 0.43
298 82 0.34
299 5 0.02
301 39 0.16
303 11 0.05
ACGTcount: A:0.58, C:0.05, G:0.08, T:0.29
Consensus pattern (301 bp):
AAAATAATATAAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAAAATATGAAAATAAAA
AAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAAACTTAAATAATA
CATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAAATACAAAAATAATATATTTTAAAA
AATAAGATACGAAAAATAAAAAAATACAAAGAAAGTGCTAAAATCAGGGTTATTTATTAAATAAT
ATAAAAAATACCTAAATAATACATTTGAAACATTATGTACC
Found at i:60287479 original size:7 final size:6
Alignment explanation
Indices: 60287458--60287487 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
60287448 ATATTTTTTT
60287458 AAAATA AAAATA AAAATAA AAAATA AAAAT
1 AAAATA AAAATA AAAAT-A AAAATA AAAAT
60287488 TAATTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:60287481 original size:13 final size:12
Alignment explanation
Indices: 60287458--60287487 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
60287448 ATATTTTTTT
60287458 AAAATAAAAATA
1 AAAATAAAAATA
60287470 AAAATAAAAAATA
1 AAAAT-AAAAATA
60287483 AAAAT
1 AAAAT
60287488 TAATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (12 bp):
AAAATAAAAATA
Found at i:60289504 original size:72 final size:72
Alignment explanation
Indices: 60289385--60289525 Score: 221
Period size: 72 Copynumber: 2.0 Consensus size: 72
60289375 CGAGCGATCA
* * *
60289385 CATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCGGGCAATGACTATTTCCCGGGCTC
1 CATTCACATTCGACTGATACTTCTTATCATCCGGATTTGCCGAGCAATGACTATTTCCCAGGCTC
60289450 GTCATCG
66 GTCATCG
* *
60289457 CATTCACATTCGGA-TGATACTTCTTATCATCTGGATTTTCCGAGCAATGACTATTTCCCAGGCT
1 CATTCACATTC-GACTGATACTTCTTATCATCCGGATTTGCCGAGCAATGACTATTTCCCAGGCT
60289521 CGTCA
65 CGTCA
60289526 GGGGGCGGAT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
72 61 0.97
73 2 0.03
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.33
Consensus pattern (72 bp):
CATTCACATTCGACTGATACTTCTTATCATCCGGATTTGCCGAGCAATGACTATTTCCCAGGCTC
GTCATCG
Found at i:60290078 original size:17 final size:17
Alignment explanation
Indices: 60290058--60290095 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
60290048 AATACATTAC
60290058 AACATTAATCT-AATTGG
1 AACATTAAT-TAAATTGG
60290075 AACATTAATTAAATTGG
1 AACATTAATTAAATTGG
60290092 AACA
1 AACA
60290096 AATGGCATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32
Consensus pattern (17 bp):
AACATTAATTAAATTGG
Found at i:60294185 original size:26 final size:26
Alignment explanation
Indices: 60294149--60294208 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
60294139 AATAACTAAC
*
60294149 AATAATTAGGGTTTTTTACTAACAAT
1 AATAATAAGGGTTTTTTACTAACAAT
60294175 AATAATAAGGGTTTTTTACTAACAAT
1 AATAATAAGGGTTTTTTACTAACAAT
60294201 AATAATAA
1 AATAATAA
60294209 CTAATAGCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (26 bp):
AATAATAAGGGTTTTTTACTAACAAT
Found at i:60294368 original size:25 final size:26
Alignment explanation
Indices: 60294323--60294375 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
60294313 TTCTTTCTTT
60294323 TTTCCTTCTCCTTTTTCTTCTCCTCC
1 TTTCCTTCTCCTTTTTCTTCTCCTCC
* *
60294349 TTTCTTTC-CCTTTATT-TTCTTCTCC
1 TTTCCTTCTCCTTT-TTCTTCTCCTCC
60294374 TT
1 TT
60294376 GCTGCTGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTCCTTCTCCTTTTTCTTCTCCTCC
Found at i:60294542 original size:18 final size:19
Alignment explanation
Indices: 60294521--60294563 Score: 70
Period size: 18 Copynumber: 2.3 Consensus size: 19
60294511 TTTTTTTTAC
*
60294521 TTTTTTTCGTTTTTAGC-T
1 TTTTTTTCGTTTCTAGCAT
60294539 TTTTTTTCGTTTCTAGCAT
1 TTTTTTTCGTTTCTAGCAT
60294558 TTTTTT
1 TTTTTT
60294564 ACTGTGCATG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.07, C:0.12, G:0.09, T:0.72
Consensus pattern (19 bp):
TTTTTTTCGTTTCTAGCAT
Found at i:60295222 original size:29 final size:29
Alignment explanation
Indices: 60295190--60295262 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
60295180 CTTTAACATT
* *
60295190 TTTATACCTTTTAATTTTATTATGCACTC-
1 TTTATACC-TCTAATTTTATTATGCACACA
60295219 TTTATAACCTCTAATTTTATTATGCACACA
1 TTTAT-ACCTCTAATTTTATTATGCACACA
*
60295249 TTTATA-TTCTAATT
1 TTTATACCTCTAATT
60295263 ACATAATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
28 7 0.18
29 24 0.62
30 8 0.21
ACGTcount: A:0.29, C:0.16, G:0.03, T:0.52
Consensus pattern (29 bp):
TTTATACCTCTAATTTTATTATGCACACA
Found at i:60297405 original size:24 final size:24
Alignment explanation
Indices: 60297373--60297421 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
60297363 ATTGAACCAA
*
60297373 AACTAACTGTTATATCCTTATAAT
1 AACTAACTGTTAGATCCTTATAAT
60297397 AACTAACTGTTAGATCCTTATAAT
1 AACTAACTGTTAGATCCTTATAAT
60297421 A
1 A
60297422 TTCTCACTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (24 bp):
AACTAACTGTTAGATCCTTATAAT
Done.