Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 215 of 427
Found at i:60575313 original size:17 final size:17
Alignment explanation
Indices: 60575291--60575323 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
60575281 ATAAGTAAAT
*
60575291 AAATATTTAAAAAATAG
1 AAATATCTAAAAAATAG
60575308 AAATATCTAAAAAATA
1 AAATATCTAAAAAATA
60575324 AAACATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.27
Consensus pattern (17 bp):
AAATATCTAAAAAATAG
Found at i:60576005 original size:23 final size:23
Alignment explanation
Indices: 60575955--60576008 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
60575945 ATCTTCTAAA
60575955 AGTTTTAATAATACGTAAAATAT
1 AGTTTTAATAATACGTAAAATAT
* **
60575978 TGTTTTAATAATATTTGAAAAT-T
1 AGTTTTAATAATACGT-AAAATAT
60576001 AGTTTTAA
1 AGTTTTAA
60576009 AACAAAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.46
Consensus pattern (23 bp):
AGTTTTAATAATACGTAAAATAT
Found at i:60582996 original size:52 final size:52
Alignment explanation
Indices: 60582929--60583029 Score: 123
Period size: 52 Copynumber: 1.9 Consensus size: 52
60582919 GTATACAACC
* * *
60582929 ATCGATGTCGTG-AAAACTGCCATCCCATGTCACGACACCAAAATTTGAAGCT
1 ATCGATGTCGCGAAAAAC-ACCATCCCATGTAACGACACCAAAATTTGAAGCT
* * * *
60582981 ATCGATGTTGCGAAAAACACCATCCCATGTAATGACACCTAACTTTGAA
1 ATCGATGTCGCGAAAAACACCATCCCATGTAACGACACCAAAATTTGAA
60583030 CCAATAGGGA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
52 36 0.88
53 5 0.12
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.24
Consensus pattern (52 bp):
ATCGATGTCGCGAAAAACACCATCCCATGTAACGACACCAAAATTTGAAGCT
Found at i:60587366 original size:46 final size:46
Alignment explanation
Indices: 60587309--60587396 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
60587299 TTCGACATGT
* *
60587309 TTATGATAATTTTCACGAAAATTCATTAAATCCTTAGAAATCCTTA
1 TTATGACAATTTTCACGAAAATTCATTAAATCCTTAAAAATCCTTA
* * *
60587355 TTATGACAATTTTTATGGAAATTCATTAAATCCTTAAAAATC
1 TTATGACAATTTTCACGAAAATTCATTAAATCCTTAAAAATC
60587397 GTTAACAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.40
Consensus pattern (46 bp):
TTATGACAATTTTCACGAAAATTCATTAAATCCTTAAAAATCCTTA
Found at i:60591755 original size:22 final size:21
Alignment explanation
Indices: 60591730--60591780 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
60591720 GGGCTCACAG
*
60591730 GCCCGTGTGGTCCAAGGGACAC
1 GCCCGTGT-GACCAAGGGACAC
* **
60591752 GCCCATGTGACCCTGGGACAC
1 GCCCGTGTGACCAAGGGACAC
60591773 GCCCGTGT
1 GCCCGTGT
60591781 TGGAGGCCGT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (21 bp):
GCCCGTGTGACCAAGGGACAC
Found at i:60597343 original size:20 final size:20
Alignment explanation
Indices: 60597318--60597356 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
60597308 TAAATTCCAA
60597318 TCCAT-ATTATAATGGTTTTG
1 TCCATAATT-TAATGGTTTTG
*
60597338 TCCATAATTTCATGGTTTT
1 TCCATAATTTAATGGTTTT
60597357 ATCTTGTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.23, C:0.13, G:0.13, T:0.51
Consensus pattern (20 bp):
TCCATAATTTAATGGTTTTG
Found at i:60598191 original size:8 final size:8
Alignment explanation
Indices: 60598160--60598194 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
60598150 GGAAAATAAA
60598160 AAGGAAAGG
1 AAGGAAA-G
*
60598169 AAGGAAGG
1 AAGGAAAG
60598177 AAGGAAAG
1 AAGGAAAG
60598185 AAGGAAAG
1 AAGGAAAG
60598193 AA
1 AA
60598195 CAAAGCCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 18 0.75
9 6 0.25
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (8 bp):
AAGGAAAG
Found at i:60608978 original size:40 final size:40
Alignment explanation
Indices: 60608955--60609139 Score: 232
Period size: 40 Copynumber: 4.7 Consensus size: 40
60608945 CTTAAGTATG
*
60608955 AACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACG
1 AACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACA
* *
60608995 AACAGGGGCAC--ATGTGCAATC-AGGTGTACCGAAGTACA
1 AACAAGGGCACGTATGTGCAATCAAGG-GTACCAAAGTACA
* * *
60609033 AACAGGGGCACGTATGTGTAATCAGGGGTACCAAAGTACA
1 AACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACA
* * ***
60609073 AACAAGGGCACATATGTGCAATCAGGGGTATTGAAGTACA
1 AACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACA
*
60609113 AATAAGGGCACGTATGTGCAATCAAGG
1 AACAAGGGCACGTATGTGCAATCAAGG
60609140 TATAATTTAC
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
37 3 0.02
38 32 0.25
40 89 0.71
41 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (40 bp):
AACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACA
Found at i:60609046 original size:78 final size:79
Alignment explanation
Indices: 60608955--60609139 Score: 273
Period size: 80 Copynumber: 2.3 Consensus size: 79
60608945 CTTAAGTATG
* *
60608955 AACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACGAACAGGGGCAC-ATGTGCAATCAGG
1 AACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACAAACAAGGGCACAATGTGCAATCAGG
*
60609019 TGTACCGAAGTACA
66 GGTACCGAAGTACA
* * *
60609033 AACAGGGGCACGTATGTGTAATCAGGGGTACCAAAGTACAAACAAGGGCACATATGTGCAATCAG
1 AACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACAAACAAGGGCACA-ATGTGCAATCAG
**
60609098 GGGTATTGAAGTACA
65 GGGTACCGAAGTACA
*
60609113 AATAAGGGCACGTATGTGCAATCAAGG
1 AACAAGGGCACGTATGTGCAATCAAGG
60609140 TATAATTTAC
Statistics
Matches: 93, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
78 46 0.49
80 47 0.51
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (79 bp):
AACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACAAACAAGGGCACAATGTGCAATCAGG
GGTACCGAAGTACA
Found at i:60609123 original size:118 final size:119
Alignment explanation
Indices: 60608915--60609136 Score: 284
Period size: 118 Copynumber: 1.9 Consensus size: 119
60608905 TCGAAATGTT
* ** ** *
60608915 AACAGGGGCATGTAAGTGTAATCAAGGCTACTTAAGTATGAACAAGGGCACGTATGTGCAATCAA
1 AACAGGGGCACGTAAGTGTAATCAAGGCTACCAAAGTACAAACAAGGGCACATATGTGCAATCAA
* *
60608980 GGGTACCAAAGTACGAACAGGGGCAC-ATGTGCAATCAGGTGTACCGAAGTACA
66 GGGTACCAAAGTACAAACAAGGGCACGATGTGCAATCAGGTGTACCGAAGTACA
* * * *
60609033 AACAGGGGCACGTATGTGTAATCAGGGGTACCAAAGTACAAACAAGGGCACATATGTGCAATCAG
1 AACAGGGGCACGTAAGTGTAATCAAGGCTACCAAAGTACAAACAAGGGCACATATGTGCAATCAA
*** *
60609098 GGGTATTGAAGTACAAATAAGGGCACGTATGTGCAATCA
66 GGGTACCAAAGTACAAACAAGGGCACG-ATGTGCAATCA
60609137 AGGTATAATT
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
118 75 0.87
120 11 0.13
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (119 bp):
AACAGGGGCACGTAAGTGTAATCAAGGCTACCAAAGTACAAACAAGGGCACATATGTGCAATCAA
GGGTACCAAAGTACAAACAAGGGCACGATGTGCAATCAGGTGTACCGAAGTACA
Found at i:60609156 original size:80 final size:77
Alignment explanation
Indices: 60608955--60609141 Score: 257
Period size: 78 Copynumber: 2.4 Consensus size: 77
60608945 CTTAAGTATG
* * *
60608955 AACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACGAACAGGGGCACATGTGCAATCAGGT
1 AACAAGGGCACGTATGTGCAATCAA-GGTACCAAAGTACAAACAAGGGCACATGTGCAATCAGGG
60609020 GTACCGAAGTACA
65 GTACCGAAGTACA
* * *
60609033 AACAGGGGCACGTATGTGTAATCAGGGGTACCAAAGTACAAACAAGGGCACATATGTGCAATCAG
1 AACAAGGGCACGTATGTGCAATCA-AGGTACCAAAGTACAAACAAGGGCAC--ATGTGCAATCAG
**
60609098 GGGTATTGAAGTACA
63 GGGTACCGAAGTACA
*
60609113 AATAAGGGCACGTATGTGCAATCAAGGTA
1 AACAAGGGCACGTATGTGCAATCAAGGTA
60609142 TAATTTACAT
Statistics
Matches: 94, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
78 45 0.48
79 4 0.04
80 45 0.48
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (77 bp):
AACAAGGGCACGTATGTGCAATCAAGGTACCAAAGTACAAACAAGGGCACATGTGCAATCAGGGG
TACCGAAGTACA
Found at i:60620287 original size:20 final size:20
Alignment explanation
Indices: 60620262--60620309 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
60620252 ATTTTGATAT
*
60620262 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATAC
60620282 ACATGATATGTATGATATAC
1 ACATGATATGTATGATATAC
60620302 ACATGATA
1 ACATGATA
60620310 AATTCATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATAC
Found at i:60620401 original size:26 final size:26
Alignment explanation
Indices: 60620357--60620428 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
60620347 GAAGAAGTGC
* *
60620357 AAAAGGGC-TATGCCCTAGTTTACCG
1 AAAAGGGCTTTTGCCCTAGTTTACCA
*
60620382 AAAAGGGCTTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTTGCCCTAGTTTACCA
*
60620408 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCTAGTT
60620429 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 8 0.19
26 34 0.81
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCTAGTTTACCA
Found at i:60620441 original size:25 final size:26
Alignment explanation
Indices: 60620367--60620441 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
60620357 AAAAGGGCTA
* *
60620367 TGCCCTAGTTTACCGAAAAG-GGCTTT
1 TGCCCCAGTTTATC-AAAAGAGGCTTT
*
60620393 TGCCCTAGTTTATCAAAA-AGGGCTTT
1 TGCCCCAGTTTATCAAAAGA-GGCTTT
*
60620419 TGCCCCAG-TTATTAAAAGAGGCT
1 TGCCCCAGTTTATCAAAAGAGGCT
60620442 AGGCCTCCAG
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
25 16 0.37
26 27 0.63
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
TGCCCCAGTTTATCAAAAGAGGCTTT
Found at i:60620686 original size:31 final size:31
Alignment explanation
Indices: 60620648--60620731 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
60620638 TTGTTTCAGT
*
60620648 AAAGGCTTCGACCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
60620679 AAAGGCTTCGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
60620710 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
60620732 CTGAGCTTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:60626743 original size:20 final size:20
Alignment explanation
Indices: 60626718--60626765 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
60626708 ATTTTGATAT
60626718 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
60626738 ACATGATATGTATGATATGT
1 ACATGATATGTATGATATGC
60626758 ACATGATA
1 ACATGATA
60626766 AATTCATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:60626745 original size:11 final size:10
Alignment explanation
Indices: 60626712--60626765 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 10
60626702 TATGAGATTT
60626712 TGATAT-ACA
1 TGATATGACA
*
60626721 TGATATG-TA
1 TGATATGACA
60626730 TGATATGCACA
1 TGATATG-ACA
*
60626741 TGATATG-TA
1 TGATATGACA
60626750 TGATATGTACA
1 TGATATG-ACA
60626761 TGATA
1 TGATA
60626766 AATTCATATA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 22 0.61
11 14 0.39
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37
Consensus pattern (10 bp):
TGATATGACA
Found at i:60626842 original size:26 final size:26
Alignment explanation
Indices: 60626813--60626884 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
60626803 GAGGAAGTTC
*
60626813 AAAAGGGC-TATGCCCCAGTTTACCAA
1 AAAAGGGCTTTTGCCCCAGTTTA-CAA
**
60626839 AAAA-GGCTTTTGCCCCAGTTTATGA
1 AAAAGGGCTTTTGCCCCAGTTTACAA
60626864 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
60626885 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
25 8 0.20
26 33 0.80
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACAA
Found at i:60626866 original size:25 final size:25
Alignment explanation
Indices: 60626823--60626897 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 25
60626813 AAAAGGGCTA
*
60626823 TGCCCCAGTTTACCAAAAAAGGCTTT
1 TGCCCCAGTTTA-TAAAAAAGGCTTT
*
60626849 TGCCCCAGTTTATGAAAAAGGGCTTT
1 TGCCCCAGTTTAT-AAAAAAGGCTTT
*
60626875 TGCCCCAG-TTATTAAAAGAGGCT
1 TGCCCCAGTTTA-TAAAAAAGGCT
60626898 AGGCCTCCAG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
25 11 0.26
26 32 0.74
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (25 bp):
TGCCCCAGTTTATAAAAAAGGCTTT
Found at i:60627141 original size:31 final size:31
Alignment explanation
Indices: 60627103--60627179 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
60627093 TTGTTTCAGT
60627103 AAAGGCTTCGGCCCAATGACATGAATAATGA
1 AAAGGCTTCGGCCCAATGACATGAATAATGA
* * * *
60627134 AAAGGCTTCGGCCTAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAATGACATGAATAATGA
*
60627165 AAAGGCTTTGGCCCA
1 AAAGGCTTCGGCCCA
60627180 GTATATGCTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGACATGAATAATGA
Found at i:60630047 original size:49 final size:49
Alignment explanation
Indices: 60629984--60630114 Score: 158
Period size: 49 Copynumber: 2.7 Consensus size: 49
60629974 ACATTAAAGT
* *
60629984 CGATGCCGTGTCCTAGACAAGTTTTACACTGACTTTCATATATCAAG-GC
1 CGATGCCATGTCCTAGACAAGTCTTACACTGACTTTCATATATC-AGTGC
* * * *
60630033 CGATGCCATCTCCTAGACAAGTCTTACACT-AGCTTTCATCTATCGGTGT
1 CGATGCCATGTCCTAGACAAGTCTTACACTGA-CTTTCATATATCAGTGC
* *
60630082 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
1 CGATGCCATGTCCTAGACAAGTCTTACACTGAC
60630115 ACACAACAAG
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
48 2 0.03
49 67 0.96
50 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCTAGACAAGTCTTACACTGACTTTCATATATCAGTGC
Found at i:60630234 original size:46 final size:46
Alignment explanation
Indices: 60630172--60630289 Score: 175
Period size: 46 Copynumber: 2.6 Consensus size: 46
60630162 TATATCCTGA
**
60630172 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAC-AT
* *
60630219 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTATAACGT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAACAT
*
60630264 GGCCGATGCATGTCCCAGATATGTCT
1 GGCCGATGCATGTCCCAGACATGTCT
60630290 ACATTGGCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
45 1 0.02
46 64 0.98
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAACAT
Found at i:60640208 original size:2 final size:2
Alignment explanation
Indices: 60640201--60640228 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
60640191 GCTCTTGCAC
60640201 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60640229 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60641127 original size:40 final size:40
Alignment explanation
Indices: 60640935--60641120 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
60640925 TCGAATGATG
* * *
60640935 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
60640975 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60641015 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
60641055 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
60641096 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60641121 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60641127 original size:80 final size:80
Alignment explanation
Indices: 60640935--60641153 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 80
60640925 TCGAATGATG
* * **
60640935 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
60640999 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
60641015 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
60641077 TCTGTGCGAGTTACTATAA
64 TC-GTGCGAGTTACTA-AA
* **
60641096 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
60641154 TACGTGATTC
Statistics
Matches: 119, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
79 19 0.16
80 90 0.76
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:60651207 original size:29 final size:29
Alignment explanation
Indices: 60651108--60651266 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
60651098 ACTCCATTTC
* * **
60651108 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
60651137 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
60651165 CGCACAC-CAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
60651194 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
60651223 GCACAGTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
60651252 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
60651267 ATCTCGTCAC
Statistics
Matches: 109, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
28 22 0.20
29 87 0.80
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:60660735 original size:39 final size:40
Alignment explanation
Indices: 60660691--60660782 Score: 141
Period size: 40 Copynumber: 2.3 Consensus size: 40
60660681 TTACAAAATA
*
60660691 TTATCTAATTACAC-ATTTTTGTACAAAATTCATAATATT
1 TTATCTAATTACACTATTTTTGTACAAAATTCATAACATT
* * *
60660730 TTATCTAGTTACACTTTTTTTTTACAAAATTCATAACATT
1 TTATCTAATTACACTATTTTTGTACAAAATTCATAACATT
60660770 TTATCTAATTACA
1 TTATCTAATTACA
60660783 AAATATTTTC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.28
40 34 0.72
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (40 bp):
TTATCTAATTACACTATTTTTGTACAAAATTCATAACATT
Found at i:60668683 original size:29 final size:29
Alignment explanation
Indices: 60668651--60668815 Score: 199
Period size: 29 Copynumber: 5.7 Consensus size: 29
60668641 ATACCCTTCG
** * *
60668651 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
60668680 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
60668709 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
60668738 AGCAT-GCACACTTAGTGCCATATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
60668767 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
60668796 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
60668816 ATCTCGTCAC
Statistics
Matches: 123, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
29 122 0.99
30 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:60668689 original size:58 final size:58
Alignment explanation
Indices: 60668627--60668815 Score: 173
Period size: 58 Copynumber: 3.3 Consensus size: 58
60668617 ATTTAAGCCC
* * * *
60668627 GCACACACAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTCCAGCTT
1 GCACACATAGTGCCATACCCTTCCAGCAT-GCACACCCAGTGCCGTATATTTCCAGCAT
* *** ** *
60668685 GCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCAT
1 GCACACATAGTGCCATACCCTTCCAGCATGCACACCCAGTGCCGTATATTTCCAGCAT
* *** * ** * *
60668743 GCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACATAGTGCCATACCCTTCCAGCATGCACACCCAGTGCCGTATATTTCCAGCAT
*
60668801 GCACACTTAGTGCCA
1 GCACACATAGTGCCA
60668816 ATCTCGTCAC
Statistics
Matches: 113, Mismatches: 17, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
58 112 0.99
59 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (58 bp):
GCACACATAGTGCCATACCCTTCCAGCATGCACACCCAGTGCCGTATATTTCCAGCAT
Found at i:60668718 original size:87 final size:87
Alignment explanation
Indices: 60668626--60668815 Score: 211
Period size: 87 Copynumber: 2.2 Consensus size: 87
60668616 AATTTAAGCC
** * * * * **
60668626 CGCACACACAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTCCAGCTTGCACA
1 CGCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCACGCACA
* *
60668690 CATAGTGTCATATTTTTCCAGCA
65 CATAGTGCCATATATTTCCAGCA
* * * * **
60668713 TGCACACTTAGTGCCTTATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCACGCACAC
*
60668778 TTAGTGCCATATATTTCCAGCA
66 ATAGTGCCATATATTTCCAGCA
60668800 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60668816 ATCTCGTCAC
Statistics
Matches: 83, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
87 82 0.99
88 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (87 bp):
CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCACGCACAC
ATAGTGCCATATATTTCCAGCA
Found at i:60676594 original size:57 final size:57
Alignment explanation
Indices: 60676496--60676651 Score: 201
Period size: 57 Copynumber: 2.8 Consensus size: 57
60676486 CCTTCGAGCT
** * ** * * *
60676496 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCC-TATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
*
60676554 TGCACACTTAGTGCCTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
60676611 CGCACACTTAGTGCC-ATA-TT-CAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCTATATTTCCAGCACGCACACTTAGTGCCA
60676652 ATCTCGTCAC
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
54 21 0.24
55 2 0.02
56 3 0.03
57 50 0.57
58 12 0.14
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (57 bp):
CGCACACTTAGTGCCTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
Found at i:60676616 original size:86 final size:82
Alignment explanation
Indices: 60676496--60676650 Score: 193
Period size: 86 Copynumber: 1.8 Consensus size: 82
60676486 CCTTCGAGCT
* * ** * *
60676496 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCATGCACAC
1 CGCACACCCAGTGCCATATATTTCCAGCACGCACACATAGTGCCATA---TT-CAGCACGCACAC
60676561 TTAGTGCCTATATTTCCAGCA
62 TTAGTGCCTATATTTCCAGCA
** *
60676582 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATTCAGCACGCACACTTAG
1 CGCACACCCAGTGCCATATATTTCCAGCACGCACACATAGTGCCATATTCAGCACGCACACTTAG
60676647 TGCC
66 TGCC
60676651 AATCTCGTCA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
82 19 0.32
83 2 0.03
86 39 0.65
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (82 bp):
CGCACACCCAGTGCCATATATTTCCAGCACGCACACATAGTGCCATATTCAGCACGCACACTTAG
TGCCTATATTTCCAGCA
Found at i:60676651 original size:25 final size:28
Alignment explanation
Indices: 60676496--60676650 Score: 181
Period size: 29 Copynumber: 5.5 Consensus size: 28
60676486 CCTTCGAGCT
** * *
60676496 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCC-TATATTTCCAGCA
* * * *
60676525 TGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTG-CCTATATTTCCAGCA
*
60676554 TGCACACTTAGTGCCTATATTTCCAGCA
1 CGCACACTTAGTGCCTATATTTCCAGCA
60676582 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCC-TATATTTCCAGCA
60676611 CGCACACTTAGTGCC-ATA-TT-CAGCA
1 CGCACACTTAGTGCCTATATTTCCAGCA
60676636 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
60676651 AATCTCGTCA
Statistics
Matches: 115, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
25 20 0.17
26 2 0.02
27 3 0.03
28 27 0.23
29 62 0.54
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCTATATTTCCAGCA
Found at i:60677405 original size:19 final size:19
Alignment explanation
Indices: 60677381--60677419 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
60677371 TTTACTCACC
60677381 TAACAACTTAGTTTCGATT
1 TAACAACTTAGTTTCGATT
60677400 TAACAACTTAGTTTCGATT
1 TAACAACTTAGTTTCGATT
60677419 T
1 T
60677420 GAGATTCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (19 bp):
TAACAACTTAGTTTCGATT
Found at i:60678136 original size:29 final size:28
Alignment explanation
Indices: 60678108--60678207 Score: 121
Period size: 28 Copynumber: 3.5 Consensus size: 28
60678098 CCTCCGAGCT
** * *
60678108 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCC-TATATTTCCAGCA
* *
60678137 TGCACACTTAGTGCCAATATTTCCAGCA
1 CGCACACTTAGTGCCTATATTTCCAGCA
60678165 CGCACACTTAGTGCC-ATAATTTCCAGCA
1 CGCACACTTAGTGCCTAT-ATTTCCAGCA
60678193 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
60678208 AATCTCGTCA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 2 0.03
28 49 0.78
29 12 0.19
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCCTATATTTCCAGCA
Found at i:60678169 original size:28 final size:29
Alignment explanation
Indices: 60678128--60678210 Score: 134
Period size: 28 Copynumber: 2.9 Consensus size: 29
60678118 GTGCCGTATT
**
60678128 TTTCCAGCTTGCACACTTAGTGCCAAT-A
1 TTTCCAGCACGCACACTTAGTGCCAATAA
60678156 TTTCCAGCACGCACACTTAGTGCC-ATAA
1 TTTCCAGCACGCACACTTAGTGCCAATAA
60678184 TTTCCAGCACGCACACTTAGTGCCAAT
1 TTTCCAGCACGCACACTTAGTGCCAAT
60678211 CTCGTCACCA
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
27 2 0.04
28 47 0.92
29 2 0.04
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCAATAA
Found at i:60686058 original size:29 final size:29
Alignment explanation
Indices: 60685957--60686058 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
60685947 CCTCCGAGCT
** * * *
60685957 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
60685986 TGCACACTTAGTGCCA-ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
60686014 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
60686043 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60686059 ATCTCATCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.38
29 40 0.62
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:60686077 original size:57 final size:57
Alignment explanation
Indices: 60685966--60686077 Score: 127
Period size: 57 Copynumber: 2.0 Consensus size: 57
60685956 TCGCACACCC
* * ** * * *
60685966 AGTGCCGTATTTTTCCAGCTTGCACACTTAGTGCCAATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATATCCACCACACACACTT
* *
60686023 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATCTCAT-CACCATACACAC
1 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATAT-ATCCACCACACACAC
60686078 GTATTGCCCG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
57 44 0.98
58 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (57 bp):
AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATATCCACCACACACACTT
Found at i:60692318 original size:41 final size:40
Alignment explanation
Indices: 60692273--60692405 Score: 142
Period size: 41 Copynumber: 3.2 Consensus size: 40
60692263 TGAGGCATGT
* * *
60692273 ATGTGCATTTCAAGGGTATCAAAGTAC-GATCAGGGGAACGC
1 ATGTGCATTTCAGGGGTA-CAAAGTACAAAT-AGGGGAACAC
* *
60692314 ATGTGCATTTCAGGGGTACTGAAGTACAAATAGGGGAACAT
1 ATGTGCATTTCAGGGGTAC-AAAGTACAAATAGGGGAACAC
* * * *
60692355 ATGTGTATTTCAGGGGTACCAAAGTACAAATAGGAGCACAT
1 ATGTGCATTTCAGGGGTA-CAAAGTACAAATAGGGGAACAC
60692396 ATGTGCATTT
1 ATGTGCATTT
60692406 AAGAGAATAA
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
40 1 0.01
41 75 0.95
42 3 0.04
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (40 bp):
ATGTGCATTTCAGGGGTACAAAGTACAAATAGGGGAACAC
Found at i:60693271 original size:12 final size:12
Alignment explanation
Indices: 60693254--60693281 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
60693244 GGTCTAATTA
60693254 TCATTTAAAGTT
1 TCATTTAAAGTT
60693266 TCATTTAAAGTT
1 TCATTTAAAGTT
60693278 TCAT
1 TCAT
60693282 AGCTACTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.50
Consensus pattern (12 bp):
TCATTTAAAGTT
Found at i:60696507 original size:50 final size:50
Alignment explanation
Indices: 60696437--60696665 Score: 190
Period size: 50 Copynumber: 4.5 Consensus size: 50
60696427 ATTTGGTATG
* **
60696437 TAGTAGCCTGCACTTGGTACTACACACGTGACCTAACTATCGGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCGGATACACA
* * *** * * *
60696487 TAATAGCCTGCACTTAGTACTACACACGTTATAGAAGCTATTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CTATCGGATACACA
* * ** * *
60696538 TAGTAGCCTGCATTTAGTACTACACATGCAACCTAACAATC-TAGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCGGA-TACACA
* ** ** *
60696588 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAACCGTCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACTATCGGATACACA
* *
60696640 TAGTAGCCTGCACATAGTACTGCACA
1 TAGTAGCCTGCACTTAGTACTACACA
60696666 TGTGTTCTCA
Statistics
Matches: 142, Mismatches: 32, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
50 69 0.49
51 37 0.26
52 34 0.24
53 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCGGATACACA
Found at i:60696658 original size:52 final size:50
Alignment explanation
Indices: 60696387--60696669 Score: 182
Period size: 50 Copynumber: 5.6 Consensus size: 50
60696377 CTCTGGTACG
* * ** * **
60696387 CATAGCAGCCTGCATTTAGTACTACACATACGACCTAACAAT-TTG-GTA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTAGAACA
** * * * *
60696435 TGTAGTAGCCTGCACTTGGTACTACACACGTGACCTAACTATC-GGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTAGA-ACA
** * * * *** * * * *
60696485 TGTAATAGCCTGCACTTAGTACTACACACGTTATAGAAGCTAT-TGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATCT-AGAACA
* ** *
60696536 CATAGTAGCCTGCATTTAGTACTACACATGCAACCTAACAATCTAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTAGAACA
60696586 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-AACCGTCTTA-AACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA---TC-TAGAACA
* *
60696638 CATAGTAGCCTGCACATAGTACTGCACATGTG
1 CATAGTAGCCTGCACTTAGTACTACACATGTG
60696670 TTCTCACAAC
Statistics
Matches: 185, Mismatches: 39, Indels: 18
0.76 0.16 0.07
Matches are distributed among these distances:
48 34 0.18
49 2 0.01
50 75 0.41
51 35 0.19
52 37 0.20
53 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTAGAACA
Found at i:60699820 original size:15 final size:15
Alignment explanation
Indices: 60699786--60699845 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
60699776 TATAGATAAC
* * *
60699786 AAGAAAACCAGGATT
1 AAGAAATCCAAGATA
*
60699801 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
*
60699816 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
60699831 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
60699846 CAATATCATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.55, C:0.13, G:0.18, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:60703731 original size:101 final size:100
Alignment explanation
Indices: 60703525--60703758 Score: 297
Period size: 101 Copynumber: 2.3 Consensus size: 100
60703515 CCGGTGGCCT
* * * *
60703525 GTACACATAGTAGCCTGCACTTGGTACTACACACATGACCTAACAATCTGGTACACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACATGACCGAACAATCGGGTACACATAGTAGCC
* * * * *
60703590 TGCACTTAGTACTCCACACGTGTCCTAACCATCAG
66 TACACTTAGTACTACACACGCGACCTAACAATCAG
* * * * * **
60703625 ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTATGCATAGTAGC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACATGACCGAA-CAATCGGGTACACATAGTAGC
* *
60703690 CTACACTTAGTACTACACATGCGACCTAACAATCTG
65 CTACACTTAGTACTACACACGCGACCTAACAATCAG
60703726 GTACACATAGTAGCCTGCACTTAGTACTACACA
1 GTACACATAGTAGCCTGCACTTAGTACTACACA
60703759 TGTGTTCTCA
Statistics
Matches: 113, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
100 37 0.33
101 76 0.67
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (100 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACATGACCGAACAATCGGGTACACATAGTAGCC
TACACTTAGTACTACACACGCGACCTAACAATCAG
Found at i:60703760 original size:50 final size:50
Alignment explanation
Indices: 60703525--60703758 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
60703515 CCGGTGGCCT
* *
60703525 GTACACATAGTAGCCTGCACTTGGTACTACACACATGACCTAACAATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG
* * * * *
60703575 GTACACGTAGTAGCCTGCACTTAGTACTCCACACGTGTCCTAACCATCAG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG
* * * * * *
60703625 ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAATCTG
** * * *
60703676 GTATGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG
60703726 GTACACATAGTAGCCTGCACTTAGTACTACACA
1 GTACACATAGTAGCCTGCACTTAGTACTACACA
60703759 TGTGTTCTCA
Statistics
Matches: 155, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
50 116 0.75
51 39 0.25
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (50 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG
Found at i:60704064 original size:11 final size:11
Alignment explanation
Indices: 60704048--60704074 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
60704038 ATCAACTACT
60704048 TCATGGGTACA
1 TCATGGGTACA
60704059 TCATGGGTACA
1 TCATGGGTACA
60704070 TCATG
1 TCATG
60704075 TTCCCATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (11 bp):
TCATGGGTACA
Found at i:60722723 original size:29 final size:29
Alignment explanation
Indices: 60722633--60722792 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
60722623 ACTCGATTTC
* * **
60722633 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
60722662 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
60722690 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
60722720 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
60722749 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
60722778 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
60722793 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:60730767 original size:29 final size:29
Alignment explanation
Indices: 60730677--60730836 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
60730667 ACTCGATTTC
* * **
60730677 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
60730706 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
60730734 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
60730764 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
60730793 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
60730822 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
60730837 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:60734999 original size:24 final size:23
Alignment explanation
Indices: 60734959--60735026 Score: 68
Period size: 24 Copynumber: 3.0 Consensus size: 23
60734949 GATTATGTAG
60734959 AAAGAATAAAGAAATGAAAAAAAA
1 AAAGAA-AAAGAAATGAAAAAAAA
* * *
60734983 AAAGAAAGAGAATATGAAGAAAAC
1 AAAGAAAAAGAA-ATGAAAAAAAA
*
60735007 AAAGAAAAGGAAA--AAAAAAA
1 AAAGAAAAAGAAATGAAAAAAA
60735027 GTGTTCATTC
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
21 6 0.16
23 6 0.16
24 25 0.68
ACGTcount: A:0.76, C:0.01, G:0.16, T:0.06
Consensus pattern (23 bp):
AAAGAAAAAGAAATGAAAAAAAA
Found at i:60735441 original size:29 final size:29
Alignment explanation
Indices: 60735408--60735470 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
60735398 GTGACGAGAT
*
60735408 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
60735437 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
60735466 CGGCA
1 TGGCA
60735471 TTGGGTGTGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:60745820 original size:71 final size:71
Alignment explanation
Indices: 60745734--60745897 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
60745724 CGATTTGTCT
60745734 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
60745799 CTTTCA
66 CTTTCA
60745805 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
60745870 CTTTCA
66 CTTTCA
60745876 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
60745898 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:60745935 original size:71 final size:70
Alignment explanation
Indices: 60745734--60745931 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
60745724 CGATTTGTCT
* * * *
60745734 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
60745799 CTTTCA
65 CTTTCA
* * * *
60745805 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
60745870 CTTTCA
65 CTTTCA
* *
60745876 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
60745932 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:60750597 original size:39 final size:39
Alignment explanation
Indices: 60750554--60750786 Score: 308
Period size: 39 Copynumber: 6.0 Consensus size: 39
60750544 GTGTGAGATA
*
60750554 TATATCCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* * *
60750593 TATATCCGGGCTAAGTCTCAAAGGCATTTGTGCTGGTGC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* *
60750632 TATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* *
60750671 TATACCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* *
60750710 TATATCCGGGCTAAGTCCCGAAGGC-TTTGTGTTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* * * *
60750748 TATATCCAGGCTTAAAGTCCCGTATGC-TTTGTGGTGGTG
1 TATATCCGGGC-T-AAGTCCCGAAGGCATTTGTGCTGGTG
60750787 ATTGAATTTG
Statistics
Matches: 172, Mismatches: 20, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 20 0.12
39 131 0.76
40 21 0.12
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
Found at i:60750777 original size:40 final size:38
Alignment explanation
Indices: 60750524--60750785 Score: 197
Period size: 39 Copynumber: 6.7 Consensus size: 38
60750514 ATTTTAACCG
* * * *
60750524 GGCTAAGACCCGCAGGCCTTGT-GTGAG-ATATATATCCG
1 GGCTAAGTCCCGAAGGCTTTGTGGTG-GTAT-TATATCCA
* * * *
60750562 GGCTAATTCCCGAAGGCATTTGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGGC-TTTGTGGTGGTATTATATCCA
* * * **
60750601 GGCTAAGTCTCAAAGGCATTTGTGCTGGTGCTATATCC-
1 GGCTAAGTCCCGAAGGC-TTTGTGGTGGTATTATATCCA
* * * * *
60750639 GAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATACCCG
1 G-GCTAAGTCCCGAAGGC-TTTGTGGTGGTATTATATCCA
* * * *
60750679 GGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGGC-TTTGTGGTGGTATTATATCCA
*
60750718 GGCTAAGTCCCGAAGGCTTTGTGTTGGTATTATATCCA
1 GGCTAAGTCCCGAAGGCTTTGTGGTGGTATTATATCCA
* *
60750756 GGCTTAAAGTCCCGTATGCTTTGTGGTGGT
1 GGC-T-AAGTCCCGAAGGCTTTGTGGTGGT
60750786 GATTGAATTT
Statistics
Matches: 194, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
38 35 0.18
39 134 0.69
40 25 0.13
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30
Consensus pattern (38 bp):
GGCTAAGTCCCGAAGGCTTTGTGGTGGTATTATATCCA
Found at i:60755158 original size:20 final size:20
Alignment explanation
Indices: 60755133--60755170 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
60755123 GTCACATATA
60755133 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
60755153 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
60755171 TAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:60762872 original size:29 final size:29
Alignment explanation
Indices: 60762840--60762912 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
60762830 CTTCGAGCTC
* *
60762840 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
** *
60762869 GCACACTTAGTGCCATATATTTCCAGCCT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
60762898 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
60762913 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:60764124 original size:24 final size:24
Alignment explanation
Indices: 60764083--60764140 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
60764073 TTTTTTTCCT
*
60764083 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTCTTTTTCTTCAT-TTCTC
*
60764108 TTTCTTTCTTTTT-TTCATTTCTT
1 TTTCTTTCTTTTTCTTCATTTCTC
60764131 TATTCTTTCT
1 T-TTCTTTCT
60764141 ACATAATCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 5 0.17
24 13 0.43
25 12 0.40
ACGTcount: A:0.07, C:0.19, G:0.02, T:0.72
Consensus pattern (24 bp):
TTTCTTTCTTTTTCTTCATTTCTC
Found at i:60771838 original size:2 final size:2
Alignment explanation
Indices: 60771831--60771877 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
60771821 TTAAAATTTC
60771831 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60771873 AT AT A
1 AT AT A
60771878 CAAATTAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:60776552 original size:43 final size:46
Alignment explanation
Indices: 60776497--60776614 Score: 172
Period size: 45 Copynumber: 2.7 Consensus size: 46
60776487 CGGGCTTCAG
*
60776497 GCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCGAG-CTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGATTATTCAAGCCTTTGA
* * *
60776540 GCTTAGTAGGCTATGATGCCGGTGAAAT-ATTATTCAAGCCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGATTATTCAAGCCTTTGA
60776585 GCCTAGCAGGCTATAATGCCGGTGAAATGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA
60776615 AATGTTATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 1 0.02
43 27 0.42
44 4 0.06
45 31 0.48
46 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (46 bp):
GCCTAGCAGGCTATAATGCCGGTGAAATGATTATTCAAGCCTTTGA
Found at i:60777732 original size:27 final size:27
Alignment explanation
Indices: 60777702--60777935 Score: 328
Period size: 27 Copynumber: 8.7 Consensus size: 27
60777692 CCAAAGTACT
*
60777702 CTCGATTTACAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
60777729 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
60777756 CTTGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
60777783 CTCGATTTACAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
60777810 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
60777837 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
60777864 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
60777891 CTC-AGTTTACAGAATTATTGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* * *
60777918 CTCAATTTGCAAAATTAC
1 CTCGATTTACAGAATTAC
60777936 TGAAATACCC
Statistics
Matches: 185, Mismatches: 18, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
26 2 0.01
27 181 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:60777984 original size:27 final size:27
Alignment explanation
Indices: 60777953--60778029 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
60777943 CCCTCGATCA
60777953 ATAAAATTACCAAAATACCCCTGGTTT
1 ATAAAATTACCAAAATACCCCTGGTTT
* *
60777980 GTAAAATTACCAAAATACCCTTGGTTT
1 ATAAAATTACCAAAATACCCCTGGTTT
* * *
60778007 ACAAAATTACCGAAAGACCCCTG
1 ATAAAATTACCAAAATACCCCTG
60778030 TAGGGTAGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.26
Consensus pattern (27 bp):
ATAAAATTACCAAAATACCCCTGGTTT
Found at i:60778042 original size:81 final size:81
Alignment explanation
Indices: 60777957--60778258 Score: 247
Period size: 81 Copynumber: 3.8 Consensus size: 81
60777947 CGATCAATAA
* ** *
60777957 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATA-CCCT-T-GGTTTACAAAATTACC
1 AATTACCGAAATACCCCT-GTAGGGTAAAATTACCAAAATACCCCTGTAGG-GT--AAAATTACC
60778018 GAAAGACCCCTGTAGGGTAG
62 GAAAGACCCCTGTAGGGTAG
** * * ** *
60778038 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGGATTATCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAA
*
60778103 TACCCCTGTAGGGTAG
66 GACCCCTGTAGGGTAG
* * ** * * *
60778119 AATTACCGAAATA-CCCTGTAGGGTAGAATTATCGCAATACCCC-GTAGGGTAGAATTATCAAAA
1 AATTACCGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAA
* **
60778182 TACCTTTGTAGGGTAG
66 GACCCCTGTAGGGTAG
* ** * * * ** *
60778198 AAATATTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCTTTGTGGGGTAAAATTACC
1 AATTACCGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAAAATTACC
60778259 ATTTTGCCCC
Statistics
Matches: 184, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
79 42 0.23
80 55 0.30
81 79 0.43
82 4 0.02
83 2 0.01
84 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.26
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAA
GACCCCTGTAGGGTAG
Found at i:60778193 original size:106 final size:107
Alignment explanation
Indices: 60778011--60778239 Score: 343
Period size: 106 Copynumber: 2.1 Consensus size: 107
60778001 TGGTTTACAA
* * *
60778011 AATTACCGAAAGACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AATTACCGAAATA-CCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACCAAAA
* *
60778076 TACCCCTGTAGGGTAGGATTATCGAAATACCCCTGTAGGGTAG
65 TACCCCTGTAGGGTAGAAATATCGAAATACCCCTGTAGGGTAG
* *
60778119 AATTACCGAAATACCCTGTAGGGTAGAATTATCGCAATACCCC-GTAGGGTAGAATTATCAAAAT
1 AATTACCGAAATACCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACCAAAAT
** *
60778183 ACCTTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
66 ACCCCTGTAGGGTAGAAATATCGAAATACCCCTGTAGGGTAG
*
60778225 AATTACCGAGATACC
1 AATTACCGAAATACC
60778240 TTTGTGGGGT
Statistics
Matches: 110, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
106 70 0.64
107 28 0.25
108 12 0.11
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (107 bp):
AATTACCGAAATACCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACCAAAAT
ACCCCTGTAGGGTAGAAATATCGAAATACCCCTGTAGGGTAG
Found at i:60778250 original size:27 final size:27
Alignment explanation
Indices: 60778011--60778239 Score: 318
Period size: 27 Copynumber: 8.6 Consensus size: 27
60778001 TGGTTTACAA
* *
60778011 AATTACCGAAAGACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
60778038 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
60778065 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
60778092 GATTATCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
60778119 AATTACCGAAATA-CCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
60778145 AATTATCGCAATACCCC-GTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* **
60778171 AATTATCAAAATACCTTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
60778198 AAATATTGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
60778225 AATTACCGAGATACC
1 AATTATCGAAATACC
60778240 TTTGTGGGGT
Statistics
Matches: 176, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 46 0.26
27 130 0.74
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTATCGAAATACCCCTGTAGGGTAG
Found at i:60778495 original size:27 final size:26
Alignment explanation
Indices: 60778457--60778536 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 26
60778447 CGGAGGAAGC
*
60778457 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
60778484 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
60778510 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
60778537 ATTGATCGAT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 9 0.18
27 40 0.82
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:60778659 original size:22 final size:22
Alignment explanation
Indices: 60778627--60778685 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
60778617 CCCGTTATTA
*
60778627 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
60778649 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
60778671 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
60778686 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:60778872 original size:27 final size:27
Alignment explanation
Indices: 60778842--60778918 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
60778832 TATTTTGTTA
* *
60778842 GGTGGCTTTGCCACATTATCTG-ATTCT
1 GGTGGCTCTGCCACAATATCTGTA-TCT
60778869 GGTGGCTCTGCCACAATATCTGTATCT
1 GGTGGCTCTGCCACAATATCTGTATCT
* *
60778896 GGTGGCTCTGTCACGATATCTGT
1 GGTGGCTCTGCCACAATATCTGT
60778919 TCTAGCAGCC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 44 0.98
28 1 0.02
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATATCTGTATCT
Found at i:60779080 original size:6 final size:6
Alignment explanation
Indices: 60779065--60779226 Score: 172
Period size: 6 Copynumber: 26.8 Consensus size: 6
60779055 CTGTCACGTA
* * *
60779065 ATTCTG ATTCTA ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
60779113 ATTCTG TTTCTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
60779162 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
60779210 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
60779227 CATTTTGGTT
Statistics
Matches: 131, Mismatches: 14, Indels: 22
0.78 0.08 0.13
Matches are distributed among these distances:
5 8 0.06
6 115 0.88
7 6 0.05
8 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:60779178 original size:85 final size:85
Alignment explanation
Indices: 60779040--60779226 Score: 329
Period size: 85 Copynumber: 2.2 Consensus size: 85
60779030 TTGCATTCAC
* *
60779040 ATTCTGATTTTGATTCTGTCACGTAATTCTGATTCTAATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTAATTCTGATTCTGTTACTAATACTGATTC
*
60779105 TGATTCTGATTCTGTTTCTG
66 TGATTCTGATTCTGTTACTG
* *
60779125 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTAATTCTGATTCTGTTACTAATACTGATTC
60779190 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
60779210 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
60779227 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTAATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:60779244 original size:30 final size:30
Alignment explanation
Indices: 60779040--60779247 Score: 216
Period size: 30 Copynumber: 7.1 Consensus size: 30
60779030 TTGCATTCAC
* * *
60779040 ATTCTGATTTTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-CAATTCTG
* * *
60779071 ATTCTAATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
60779101 ATTCTGATTCTGATTCTG-T-----TTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
*
60779125 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
*
60779156 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACCAAT-TCTG
**
60779186 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
60779216 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
60779246 AT
1 AT
60779248 AATGTTTCTT
Statistics
Matches: 153, Mismatches: 14, Indels: 21
0.81 0.07 0.11
Matches are distributed among these distances:
24 22 0.14
29 2 0.01
30 80 0.52
31 49 0.32
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:60780006 original size:38 final size:38
Alignment explanation
Indices: 60779963--60780198 Score: 330
Period size: 38 Copynumber: 6.2 Consensus size: 38
60779953 ATGATATTTG
* ** * *
60779963 TATCCGGCTTAAAAACCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGGTTAAATCCCGCAGGCT-TCGTGCTGGTATTA
60780001 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
60780039 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* *
60780077 TATCCGGGTTAAATCTCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * *
60780115 TATCCGGGTTAATTCCCGCAGGCTTCATGCCGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * *
60780153 TATCCGAGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
*
60780191 TATTCGGG
1 TATCCGGG
60780199 CCTTTGAGCC
Statistics
Matches: 177, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
37 1 0.01
38 176 0.99
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
Found at i:60780330 original size:45 final size:46
Alignment explanation
Indices: 60780194--60780363 Score: 192
Period size: 45 Copynumber: 3.8 Consensus size: 46
60780184 GGTATTATAT
* * * *
60780194 TCGGGCCTTT-GAGCCTAGCAGGCTATTATGCTGGTGAGACACTAT
1 TCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATACTAA
*
60780239 TCGGGCCTTTAG-GCCTAGCAGGCTATAATGCCGGTGAGATACTAA
1 TCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATACTAA
* *
60780284 TCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGATGAAATGA-TAA
1 TCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAT-ACTAA
* * *
60780329 TCAGGCC--TCGATCCTAGCAGGCGA-AATGCCGGTGA
1 TCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGA
60780364 TTTGAGAAAA
Statistics
Matches: 110, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
43 10 0.09
44 20 0.18
45 77 0.70
46 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (46 bp):
TCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATACTAA
Found at i:60800132 original size:20 final size:20
Alignment explanation
Indices: 60800107--60800166 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
60800097 CAACATACTT
60800107 TTATTAATGGTCTAATTACC
1 TTATTAATGGTCTAATTACC
60800127 TTATTAATGGTCTAATTACC
1 TTATTAATGGTCTAATTACC
*
60800147 TTATTAACGGTCTAATTACC
1 TTATTAATGGTCTAATTACC
60800167 ATATGGGGAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.43
Consensus pattern (20 bp):
TTATTAATGGTCTAATTACC
Found at i:60801059 original size:23 final size:23
Alignment explanation
Indices: 60801024--60801070 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
60801014 TTAATAATAG
* *
60801024 TGGTATAATTATTATATTAATCCT
1 TGGTATAAATATTAT-TTAACCCT
60801048 TGGT-TAAATATTATTTAACCCT
1 TGGTATAAATATTATTTAACCCT
60801070 T
1 T
60801071 TTAACTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
23 9 0.43
24 4 0.19
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.49
Consensus pattern (23 bp):
TGGTATAAATATTATTTAACCCT
Found at i:60803787 original size:36 final size:37
Alignment explanation
Indices: 60803680--60803800 Score: 208
Period size: 37 Copynumber: 3.3 Consensus size: 37
60803670 TATAAAAGAA
*
60803680 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
60803717 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
60803754 GTCTTACCCGGTCATAATC-CCACACGTAATCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
60803790 GTCTCACCCGG
1 GTCTTACCCGG
60803801 AACATATTCC
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 26 0.32
37 55 0.68
ACGTcount: A:0.22, C:0.34, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:60803957 original size:49 final size:49
Alignment explanation
Indices: 60803902--60804116 Score: 376
Period size: 49 Copynumber: 4.4 Consensus size: 49
60803892 TTTTACATTA
60803902 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
60803951 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
60804000 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
60804049 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
60804098 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
60804117 CATATATGTA
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 160 1.00
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:60806456 original size:2 final size:2
Alignment explanation
Indices: 60806449--60806477 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
60806439 ACATCACTTG
60806449 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
60806478 ACTTTCCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60807768 original size:15 final size:14
Alignment explanation
Indices: 60807736--60807777 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
60807726 TAGTCATGCA
*
60807736 TCTTTCTTCTCTTT
1 TCTTTCTTCTCTTC
60807750 TCTTTCTTGCTCTTC
1 TCTTTCTT-CTCTTC
*
60807765 TCTTTCTTTTCTT
1 TCTTTCTTCTCTT
60807778 TCCTATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.00, C:0.29, G:0.02, T:0.69
Consensus pattern (14 bp):
TCTTTCTTCTCTTC
Found at i:60808962 original size:14 final size:14
Alignment explanation
Indices: 60808945--60808973 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
60808935 GCCTGTTACA
60808945 CTTGCAGATCCCAC
1 CTTGCAGATCCCAC
60808959 CTTGCAGATCCCAC
1 CTTGCAGATCCCAC
60808973 C
1 C
60808974 ATATTTAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.45, G:0.14, T:0.21
Consensus pattern (14 bp):
CTTGCAGATCCCAC
Found at i:60809026 original size:41 final size:41
Alignment explanation
Indices: 60808969--60809054 Score: 163
Period size: 41 Copynumber: 2.1 Consensus size: 41
60808959 CTTGCAGATC
60808969 CCACCATATTTAGATTGTATAAAAGTTGATTATTCACTCAA
1 CCACCATATTTAGATTGTATAAAAGTTGATTATTCACTCAA
*
60809010 CCACCATATTTTGATTGTATAAAAGTTGATTATTCACTCAA
1 CCACCATATTTAGATTGTATAAAAGTTGATTATTCACTCAA
60809051 CCAC
1 CCAC
60809055 AGTGTTCGCG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (41 bp):
CCACCATATTTAGATTGTATAAAAGTTGATTATTCACTCAA
Found at i:60809252 original size:42 final size:42
Alignment explanation
Indices: 60809206--60809333 Score: 131
Period size: 42 Copynumber: 3.0 Consensus size: 42
60809196 CTTTTGTCCC
60809206 TTTCAAAGTCACACCATTGTTGTCCCTTTCTTCTTCATTTTT
1 TTTCAAAGTCACACCATTGTTGTCCCTTTCTTCTTCATTTTT
* * * * *
60809248 TTTC-AAGTTCAGCAACC-CTGTTTTGCACCCTTCTT-TT--GTTCT
1 TTTCAAAG-TCA-C-ACCATTGTTGT-C-CCTTTCTTCTTCATTTTT
60809290 TTTCAAAGTCACACCATTGTTGTCCCTTTCTTCTTCATTTTT
1 TTTCAAAGTCACACCATTGTTGTCCCTTTCTTCTTCATTTTT
60809332 TT
1 TT
60809334 CAAGTTCAAC
Statistics
Matches: 66, Mismatches: 10, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
39 7 0.11
40 6 0.09
41 9 0.14
42 22 0.33
43 9 0.14
44 6 0.09
45 7 0.11
ACGTcount: A:0.16, C:0.27, G:0.09, T:0.49
Consensus pattern (42 bp):
TTTCAAAGTCACACCATTGTTGTCCCTTTCTTCTTCATTTTT
Found at i:60809356 original size:84 final size:84
Alignment explanation
Indices: 60809182--60809354 Score: 285
Period size: 84 Copynumber: 2.1 Consensus size: 84
60809172 CCCTACAAAT
**
60809182 TGTTTTGCACTGTTCTTTTGTCCCTTTCAAAGTCACACCATTGTTGTCCCTTTCTTCTTCATTTT
1 TGTTTTGCACCCTTCTTTTGTCCCTTTCAAAGTCACACCATTGTTGTCCCTTTCTTCTTCATTTT
*
60809247 TTTTCAAGTTCAGCAACCC
66 TTTTCAAGTTCAACAACCC
* *
60809266 TGTTTTGCACCCTTCTTTTGTTCTTTTCAAAGTCACACCATTGTTGTCCCTTTCTTCTTCA-TTT
1 TGTTTTGCACCCTTCTTTTGTCCCTTTCAAAGTCACACCATTGTTGTCCCTTTCTTCTTCATTTT
*
60809330 TTTTCAAGTTCAACAGCCC
66 TTTTCAAGTTCAACAACCC
60809349 TGTTTT
1 TGTTTT
60809355 TGTAAGCCTT
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
83 26 0.31
84 57 0.69
ACGTcount: A:0.15, C:0.27, G:0.10, T:0.48
Consensus pattern (84 bp):
TGTTTTGCACCCTTCTTTTGTCCCTTTCAAAGTCACACCATTGTTGTCCCTTTCTTCTTCATTTT
TTTTCAAGTTCAACAACCC
Found at i:60814495 original size:55 final size:55
Alignment explanation
Indices: 60814411--60814522 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
60814401 CCCCAAAGGA
*
60814411 ATTAAATTAATTTCTTAGTCATCTTGAGAAAATACATTTACTGTGGATAGTATTC
1 ATTAAATTAATTTCTTAGTCATCTTGAGAAAATACATTTACTGTAGATAGTATTC
60814466 ATTAAATTAATTTCTTAGTCATCTTGAGAAAATACATTTACTGTAGATAGTATTC
1 ATTAAATTAATTTCTTAGTCATCTTGAGAAAATACATTTACTGTAGATAGTATTC
60814521 AT
1 AT
60814523 GCAATCTATT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.42
Consensus pattern (55 bp):
ATTAAATTAATTTCTTAGTCATCTTGAGAAAATACATTTACTGTAGATAGTATTC
Found at i:60814504 original size:26 final size:26
Alignment explanation
Indices: 60814420--60814504 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
60814410 AATTAAATTA
60814420 ATTTCTTAGTCATCTTGAGAAAATAC
1 ATTTCTTAGTCATCTTGAGAAAATAC
* * * * *
60814446 ATTTACTGTGGAT-AGTATTCATTAAATTA-
1 ATTT-CT-TAG-TCA-TCTTGA-GAAAATAC
60814475 ATTTCTTAGTCATCTTGAGAAAATAC
1 ATTTCTTAGTCATCTTGAGAAAATAC
60814501 ATTT
1 ATTT
60814505 ACTGTAGATA
Statistics
Matches: 42, Mismatches: 10, Indels: 14
0.64 0.15 0.21
Matches are distributed among these distances:
25 5 0.12
26 13 0.31
27 5 0.12
28 5 0.12
29 9 0.21
30 5 0.12
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (26 bp):
ATTTCTTAGTCATCTTGAGAAAATAC
Found at i:60821873 original size:20 final size:21
Alignment explanation
Indices: 60821840--60821878 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
60821830 TTTTAACATT
60821840 AATAAGTATTTTAA-ATTTTA
1 AATAAGTATTTTAATATTTTA
60821860 AATAA-TATTCTTAATATTT
1 AATAAGTATT-TTAATATTT
60821879 CAGTGAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (21 bp):
AATAAGTATTTTAATATTTTA
Found at i:60823288 original size:23 final size:25
Alignment explanation
Indices: 60823260--60823308 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
60823250 AATAGTGTTG
60823260 TTTTTATT-TTGA-TCACTCTAATT
1 TTTTTATTATTGAGTCACTCTAATT
*
60823283 TTTTTATTAATTTAGTCACTCTAATT
1 TTTTTATT-ATTGAGTCACTCTAATT
60823309 AAGATAATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 8 0.36
25 3 0.14
26 11 0.50
ACGTcount: A:0.24, C:0.12, G:0.04, T:0.59
Consensus pattern (25 bp):
TTTTTATTATTGAGTCACTCTAATT
Found at i:60826919 original size:38 final size:38
Alignment explanation
Indices: 60826877--60826951 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
60826867 CTCAATCATA
*
60826877 TAAACAGTAATTCATTC-GATAACAGTAACTCATCCATT
1 TAAACAGTAATTCATCCAGATAACAGTAACTC-TCCATT
* * *
60826915 TAAACAGTACTTCATCCATATAACAGTAATTCTCCAT
1 TAAACAGTAATTCATCCAGATAACAGTAACTCTCCAT
60826952 ATAACACATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 20 0.62
39 12 0.38
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.32
Consensus pattern (38 bp):
TAAACAGTAATTCATCCAGATAACAGTAACTCTCCATT
Found at i:60826952 original size:18 final size:19
Alignment explanation
Indices: 60826873--60826957 Score: 93
Period size: 18 Copynumber: 4.5 Consensus size: 19
60826863 CACTCTCAAT
*
60826873 CATATAAACAGTAATTCATT
1 CATAT-AACAGTAATTCATC
* *
60826893 C-GATAACAGTAACTCATC
1 CATATAACAGTAATTCATC
* *
60826911 CATTTAAACAGTACTTCATC
1 CATAT-AACAGTAATTCATC
60826931 CATATAACAGTAATTC-TC
1 CATATAACAGTAATTCATC
60826949 CATATAACA
1 CATATAACA
60826958 CATAGCTTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
18 24 0.44
19 13 0.24
20 17 0.31
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.31
Consensus pattern (19 bp):
CATATAACAGTAATTCATC
Found at i:60827178 original size:24 final size:24
Alignment explanation
Indices: 60827146--60827192 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
60827136 ATTAAGCTAA
60827146 AACAGTAAGCTC-TGACGAGCTGAG
1 AACAGTAAGCTCTTG-CGAGCTGAG
60827170 AACAGTAAGCTCTTGCGAGCTGA
1 AACAGTAAGCTCTTGCGAGCTGA
60827193 TATATCGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 20 0.91
25 2 0.09
ACGTcount: A:0.32, C:0.21, G:0.28, T:0.19
Consensus pattern (24 bp):
AACAGTAAGCTCTTGCGAGCTGAG
Found at i:60830466 original size:29 final size:29
Alignment explanation
Indices: 60830433--60830534 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
60830423 GTGACGAGAT
60830433 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
60830462 TGGCACTAAGTGTGCGTGCTGGAAATAT-
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
60830490 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
60830519 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
60830535 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.38
29 40 0.62
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:60838319 original size:29 final size:29
Alignment explanation
Indices: 60838286--60838387 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
60838276 GTGACGAGAT
60838286 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
60838315 TGGCACTAAGTGTGCGTGCTGGAAATAT-
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
60838343 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
60838372 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
60838388 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.38
29 40 0.62
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:60844680 original size:93 final size:93
Alignment explanation
Indices: 60844568--60844739 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60844558 GCCCATAAGT
* *
60844568 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60844633 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
60844661 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60844726 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
60844740 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:60844735 original size:46 final size:46
Alignment explanation
Indices: 60844560--60844735 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
60844550 TGTAACCCGC
* * *
60844560 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
60844606 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
60844656 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
60844699 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60844736 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:60853741 original size:27 final size:28
Alignment explanation
Indices: 60853711--60853780 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
60853701 ATAATAAGTC
*
60853711 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
60853738 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
60853766 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60853781 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:60857910 original size:39 final size:40
Alignment explanation
Indices: 60857847--60858002 Score: 151
Period size: 40 Copynumber: 3.9 Consensus size: 40
60857837 CATGGAAATT
* * *
60857847 GAATGATATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-
1 GAATTATATCCGGGCTAAGA-CCCGAAGGCAATTGTGCTGA
*
60857886 GAATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCT-A
1 GAATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGA
*** *
60857925 GTGGCTACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GA
1 G-AATTATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTGA
* *
60857965 GACATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 GA-ATTATATCCGGGCTAAGACCCGAAGGCAATTGTGC
60858003 ACGTGATTAT
Statistics
Matches: 95, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
39 36 0.38
40 57 0.60
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
GAATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGA
Found at i:60858016 original size:40 final size:40
Alignment explanation
Indices: 60857888--60858018 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
60857878 TTATGCTGGA
* * *
60857888 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
60857928 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
60857968 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
60858008 ATTATATCCGG
1 ATTATATCCGG
60858019 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:60859964 original size:40 final size:40
Alignment explanation
Indices: 60859892--60860152 Score: 420
Period size: 40 Copynumber: 6.6 Consensus size: 40
60859882 TATTCGGATG
*
60859892 ATATCCGGGCTAAGT-CCGAAGGCCTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
60859931 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
60859971 ATATCCGGGCTAAGTCCCGAAGGCCTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
60860011 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
60860051 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
60860091 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
60860131 ATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
60860153 TACTTGGGTT
Statistics
Matches: 207, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 29 0.14
40 176 0.85
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:60867866 original size:192 final size:193
Alignment explanation
Indices: 60867539--60867925 Score: 758
Period size: 192 Copynumber: 2.0 Consensus size: 193
60867529 TGACCACAAA
60867539 TCCGAGATAGAAATAATTGTTTTATAATTATTTTGGGGTTTATGATATGATTGCATGATTGTGTG
1 TCCGAGATAGAAATAATTGTTTTATAATTATTTTGGGGTTTATGATATGATTGCATGATTGTGTG
60867604 AAAATTTCGTGATGAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAA
66 AAAATTTCGTGATGAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAA
60867669 GTTGCAAAATTTGCATCCCAGAAGTTTTTAATATGAAATTG-TTTGGAATATTAATTAGGAGG
131 GTTGCAAAATTTGCATCCCAGAAGTTTTTAATATGAAATTGTTTTGGAATATTAATTAGGAGG
60867731 TCCGAGATAGAAATAATTGTTTTATAATTATTTTGGGGTTTATGATATGATTGCATGATTGTGTG
1 TCCGAGATAGAAATAATTGTTTTATAATTATTTTGGGGTTTATGATATGATTGCATGATTGTGTG
60867796 AAAATTTCGTGATGAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAA
66 AAAATTTCGTGATGAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAA
*
60867861 GTTGCAAAATTTGCATCCCAGAAGTTTTTAGTATGAAATTGTTTTGGAATATTAATTAGGAGG
131 GTTGCAAAATTTGCATCCCAGAAGTTTTTAATATGAAATTGTTTTGGAATATTAATTAGGAGG
60867924 TC
1 TC
60867926 TTAAATAGAA
Statistics
Matches: 193, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
192 170 0.88
193 23 0.12
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.37
Consensus pattern (193 bp):
TCCGAGATAGAAATAATTGTTTTATAATTATTTTGGGGTTTATGATATGATTGCATGATTGTGTG
AAAATTTCGTGATGAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAA
GTTGCAAAATTTGCATCCCAGAAGTTTTTAATATGAAATTGTTTTGGAATATTAATTAGGAGG
Found at i:60869045 original size:41 final size:41
Alignment explanation
Indices: 60869000--60869117 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
60868990 TGAAAGATAA
60869000 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
60869041 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60869071 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60869112 ATGTAG
1 ATGTAG
60869118 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:60869056 original size:71 final size:71
Alignment explanation
Indices: 60868968--60869131 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
60868958 GAGATGTATC
60868968 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60869033 AGGACA
66 AGGACA
60869039 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60869104 AGGACA
66 AGGACA
60869110 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
60869132 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:60876584 original size:41 final size:41
Alignment explanation
Indices: 60876539--60876656 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
60876529 TGAAAGATAA
60876539 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
60876580 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60876610 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60876651 ATGTAG
1 ATGTAG
60876657 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:60876595 original size:71 final size:71
Alignment explanation
Indices: 60876507--60876670 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
60876497 GAGATGTATC
60876507 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60876572 AGGACA
66 AGGACA
60876578 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60876643 AGGACA
66 AGGACA
60876649 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
60876671 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:60878618 original size:27 final size:27
Alignment explanation
Indices: 60878553--60878620 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 27
60878543 GGGCATATTC
*
60878553 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
60878580 GTCATTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCCTACAGGGG-TATTACG
*
60878607 GTCACTTTACCCTA
1 GTCATTTTACCCTA
60878621 ATAGGGGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:60878702 original size:27 final size:27
Alignment explanation
Indices: 60878649--60878887 Score: 194
Period size: 27 Copynumber: 8.8 Consensus size: 27
60878639 TTTCATCCTA
* * **
60878649 CAAGGGTGTTTTGGTAAATCAACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** **
60878676 CAAAGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
60878703 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-C
* * ** *
60878732 CAAGGGTATTTTTGTAACTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
60878759 CAGGGGTATTTTGGTAATTTTACAAATT
1 CAAGGGTATTTTGGTAATTTTACAAA-C
* * *
60878787 GAA-GGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
60878813 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
60878840 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
60878867 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
60878888 GTAAATCGAG
Statistics
Matches: 168, Mismatches: 38, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
26 2 0.01
27 137 0.82
28 16 0.10
29 13 0.08
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:60878899 original size:27 final size:27
Alignment explanation
Indices: 60878680--60878928 Score: 171
Period size: 27 Copynumber: 9.1 Consensus size: 27
60878670 ACAAACCAAA
* * * *
60878680 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
*
60878707 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTATAAA-TCAAG
* * * *
60878736 GGTATTTTTGTAACTTTGTAAATCAGG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * *
60878763 GGTATTTTGGTAATTTTACAAATTGAA-
1 GGTATTTTAGTAATTTTATAAA-TCAAG
** * * *
60878790 GGTATTTCGGTAATTTCACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * *
60878817 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* * *
60878844 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* *
60878871 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*** *
60878898 GGTAAAATAGTAATTCTATAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
60878925 GGTA
1 GGTA
60878929 AAACAGTAAT
Statistics
Matches: 179, Mismatches: 35, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
26 3 0.02
27 145 0.81
28 18 0.10
29 13 0.07
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.39
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:60878929 original size:27 final size:27
Alignment explanation
Indices: 60878879--60879013 Score: 164
Period size: 27 Copynumber: 5.0 Consensus size: 27
60878869 AGGGTATTTT
* * *
60878879 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
60878906 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
60878933 AGTAATTCTATAAATCGACGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
60878960 -GATAATTTTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTATAAATCGAGGGTAAAAC
* * *
60878987 AGTAATTCTGTAAGTTGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
60879014 GGGGGTAAAA
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 92 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:60879047 original size:38 final size:38
Alignment explanation
Indices: 60878969--60879050 Score: 92
Period size: 38 Copynumber: 2.2 Consensus size: 38
60878959 CGATAATTTT
* * * *
60878969 GTAAATCGAGGGTAAAACAGTAATTCTGTAAGTTGAGG
1 GTAAAACGAGGGTAAAACAGTAATTATGTAAATCGAGG
* ** *
60879007 GTAAAACGGGGGTAAAATGGTAATTATGTAAATCGGGG
1 GTAAAACGAGGGTAAAACAGTAATTATGTAAATCGAGG
60879045 GTAAAA
1 GTAAAA
60879051 TGGTAATTCT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.39, C:0.06, G:0.30, T:0.24
Consensus pattern (38 bp):
GTAAAACGAGGGTAAAACAGTAATTATGTAAATCGAGG
Found at i:60879074 original size:65 final size:65
Alignment explanation
Indices: 60878952--60879074 Score: 165
Period size: 65 Copynumber: 1.9 Consensus size: 65
60878942 ATAAATCGAC
* * *
60878952 GGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAGTTGAGGGTAAAACGGG
1 GGTAAAACGATAATTATGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGG
* * * ** *
60879017 GGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCGGGGGTA
1 GGTAAAACGATAATTATGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
60879075 CTTTGGTAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
65 49 1.00
ACGTcount: A:0.37, C:0.07, G:0.29, T:0.28
Consensus pattern (65 bp):
GGTAAAACGATAATTATGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGG
Found at i:60879085 original size:27 final size:27
Alignment explanation
Indices: 60879007--60879074 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
60878997 TAAGTTGAGG
*
60879007 GTAAAACGGGGGTAAAATGGTAATTAT
1 GTAAATCGGGGGTAAAATGGTAATTAT
*
60879034 GTAAATCGGGGGTAAAATGGTAATTCT
1 GTAAATCGGGGGTAAAATGGTAATTAT
60879061 GTAAATCGGGGGTA
1 GTAAATCGGGGGTA
60879075 CTTTGGTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.35, C:0.06, G:0.32, T:0.26
Consensus pattern (27 bp):
GTAAATCGGGGGTAAAATGGTAATTAT
Found at i:60879101 original size:27 final size:26
Alignment explanation
Indices: 60879071--60879169 Score: 92
Period size: 27 Copynumber: 3.7 Consensus size: 26
60879061 GTAAATCGGG
* *
60879071 GGTACTTTGGTAATTTTACAAGTCGAA
1 GGTA-TTTAGTAATTTTACAAATCGAA
*
60879098 GGTATTTTAGTAATTTTACAAATCGAG
1 GGTA-TTTAGTAATTTTACAAATCGAA
* *
60879125 GGTATTTCAGTATTTTTACAAA-CTAA
1 GGTATTT-AGTAATTTTACAAATCGAA
*
60879151 GCGTATTTCGGTAATTTTA
1 G-GTATTT-AGTAATTTTA
60879170 GTAAACTAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 6 0.10
27 55 0.90
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.41
Consensus pattern (26 bp):
GGTATTTAGTAATTTTACAAATCGAA
Found at i:60879183 original size:27 final size:27
Alignment explanation
Indices: 60879080--60879184 Score: 81
Period size: 27 Copynumber: 3.9 Consensus size: 27
60879070 GGGTACTTTG
* * *
60879080 GTAATTTTACAAGTCGAAG-GTATTTTA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
60879107 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
60879134 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
60879161 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
60879185 CTAAACAGGG
Statistics
Matches: 63, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
26 2 0.03
27 53 0.84
28 8 0.13
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:60882012 original size:31 final size:31
Alignment explanation
Indices: 60881970--60882033 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
60881960 CCTTTTCATA
*
60881970 TTTCATTTTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
60882001 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
60882032 TT
1 TT
60882034 ATGTAAACGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:60882290 original size:23 final size:24
Alignment explanation
Indices: 60882226--60882390 Score: 221
Period size: 24 Copynumber: 7.0 Consensus size: 24
60882216 ACTTTATCAT
*
60882226 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
60882251 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
60882275 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
60882297 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
60882321 ATAACTGAGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
60882345 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
60882368 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60882391 TCACTTCCTC
Statistics
Matches: 125, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
22 9 0.07
23 44 0.35
24 60 0.48
25 12 0.10
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:60882367 original size:71 final size:70
Alignment explanation
Indices: 60882226--60882390 Score: 242
Period size: 71 Copynumber: 2.3 Consensus size: 70
60882216 ACTTTATCAT
* * *
60882226 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGCATAAG
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGAGGCAAAAGCCCTTTTGATAACTGGGCATAAG
60882290 CCCTTTA
64 CCCTTTA
* * *
60882297 ATAACTGGGGCGTAAGCCCTTTTGATAACTGAGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGAGGCAAAAGCCCTTTTGATAACT-GGGCATAAGC
60882362 CCTTTA
65 CCTTTA
60882368 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60882391 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
70 36 0.42
71 50 0.58
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (70 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGAGGCAAAAGCCCTTTTGATAACTGGGCATAAGCC
CTTTA
Found at i:60882465 original size:20 final size:20
Alignment explanation
Indices: 60882440--60882506 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
60882430 TTATGATTAC
60882440 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
60882460 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
60882480 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
60882500 ACCATGT
1 ATCATGT
60882507 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:60882471 original size:11 final size:11
Alignment explanation
Indices: 60882440--60882495 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
60882430 TTATGATTAC
60882440 ATCATGTGCAT
1 ATCATGTGCAT
*
60882451 ATCA--TACAT
1 ATCATGTGCAT
60882460 ATCATGTGCAT
1 ATCATGTGCAT
*
60882471 ATCA--TACAT
1 ATCATGTGCAT
*
60882480 GTCATGTGCAT
1 ATCATGTGCAT
60882491 ATCAT
1 ATCAT
60882496 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:60883812 original size:27 final size:27
Alignment explanation
Indices: 60883747--60883814 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
60883737 TGGCATATTC
* *
60883747 GTCATTTTACCATATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
60883774 GTAATTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCCTACAGGGG-TATTACG
*
60883801 GTCACTTTACCCTA
1 GTCATTTTACCCTA
60883815 ATACGGGCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:60883896 original size:27 final size:27
Alignment explanation
Indices: 60883843--60884081 Score: 194
Period size: 27 Copynumber: 8.8 Consensus size: 27
60883833 TTTCATCCTA
* * **
60883843 CAAGGGTGTTTTGGTAAATCAACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** **
60883870 CAAAGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
60883897 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-C
* * ** *
60883926 CAAGGGTATTTTTGTAACTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
60883953 CAGGGGTATTTTGGTAATTTTACAAATT
1 CAAGGGTATTTTGGTAATTTTACAAA-C
* * *
60883981 GAA-GGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
60884007 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
60884034 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
60884061 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
60884082 GTAAATCGAG
Statistics
Matches: 168, Mismatches: 38, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
26 2 0.01
27 137 0.82
28 16 0.10
29 13 0.08
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:60884093 original size:27 final size:27
Alignment explanation
Indices: 60883874--60884122 Score: 171
Period size: 27 Copynumber: 9.1 Consensus size: 27
60883864 ACAAACCAAA
* * * *
60883874 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
*
60883901 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTATAAA-TCAAG
* * * *
60883930 GGTATTTTTGTAACTTTGTAAATCAGG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * *
60883957 GGTATTTTGGTAATTTTACAAATTGAA-
1 GGTATTTTAGTAATTTTATAAA-TCAAG
** * * *
60883984 GGTATTTCGGTAATTTCACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * *
60884011 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* * *
60884038 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* *
60884065 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*** *
60884092 GGTAAAATAGTAATTCTATAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
60884119 GGTA
1 GGTA
60884123 AAACAGTAAT
Statistics
Matches: 179, Mismatches: 35, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
26 3 0.02
27 145 0.81
28 18 0.10
29 13 0.07
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.39
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:60884208 original size:27 final size:27
Alignment explanation
Indices: 60884074--60884209 Score: 164
Period size: 27 Copynumber: 5.0 Consensus size: 27
60884064 GGGTATTTTA
* **
60884074 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
60884101 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
60884128 GTAATTCTATAAATTGACGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
60884155 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
60884182 GTAATTCTGTAAGTTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
60884209 G
1 G
60884210 GGGTAAAATG
Statistics
Matches: 94, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Done.