Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 216 of 427
Found at i:60884231 original size:27 final size:27
Alignment explanation
Indices: 60884201--60884268 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
60884191 TAAGTTGAGG
*
60884201 GTAAAACGGGGGTAAAATGGTAATTAT
1 GTAAATCGGGGGTAAAATGGTAATTAT
*
60884228 GTAAATCGGGGGTAAAATGGTAATTCT
1 GTAAATCGGGGGTAAAATGGTAATTAT
*
60884255 ATAAATCGGGGGTA
1 GTAAATCGGGGGTA
60884269 CTTTGGTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.37, C:0.06, G:0.31, T:0.26
Consensus pattern (27 bp):
GTAAATCGGGGGTAAAATGGTAATTAT
Found at i:60884241 original size:38 final size:38
Alignment explanation
Indices: 60884163--60884244 Score: 101
Period size: 38 Copynumber: 2.2 Consensus size: 38
60884153 CGATAATTCT
* * * *
60884163 GTAAATCGAGGGTAAAACGGTAATTCTGTAAGTTGAGG
1 GTAAAACGAGGGTAAAACGGTAATTATGTAAATCGAGG
* * *
60884201 GTAAAACGGGGGTAAAATGGTAATTATGTAAATCGGGG
1 GTAAAACGAGGGTAAAACGGTAATTATGTAAATCGAGG
60884239 GTAAAA
1 GTAAAA
60884245 TGGTAATTCT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.38, C:0.06, G:0.32, T:0.24
Consensus pattern (38 bp):
GTAAAACGAGGGTAAAACGGTAATTATGTAAATCGAGG
Found at i:60884268 original size:65 final size:65
Alignment explanation
Indices: 60884146--60884268 Score: 165
Period size: 65 Copynumber: 1.9 Consensus size: 65
60884136 ATAAATTGAC
* * * *
60884146 GGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTTGAGGGTAAAACGGG
1 GGTAAAACGATAATTATGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGG
* * * * *
60884211 GGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTATAAATCGGGGGTA
1 GGTAAAACGATAATTATGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
60884269 CTTTGGTAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
65 49 1.00
ACGTcount: A:0.37, C:0.07, G:0.29, T:0.27
Consensus pattern (65 bp):
GGTAAAACGATAATTATGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGG
Found at i:60884295 original size:27 final size:27
Alignment explanation
Indices: 60884274--60884359 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 27
60884264 GGGTACTTTG
*
60884274 GTAATATTACAAGTCGAAGGTATTTCA
1 GTAATATTACAAATCGAAGGTATTTCA
* *
60884301 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATATTACAAATCGAAGGTATTTCA
* * * *
60884328 GTATTTTTACAAA-CTAAGCGTATTTCG
1 GTAATATTACAAATCGAAG-GTATTTCA
60884355 GTAAT
1 GTAAT
60884360 TTTAGTAAAC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
26 3 0.06
27 47 0.94
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (27 bp):
GTAATATTACAAATCGAAGGTATTTCA
Found at i:60884370 original size:28 final size:27
Alignment explanation
Indices: 60884293--60884372 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
60884283 CAAGTCGAAG
* *
60884293 GTATTTCAGTAATTTTACAAA-TCGAGG
1 GTATTTCAGTAATTTTACAAACT-AAGC
*
60884320 GTATTTCAGTATTTTTACAAACTAAGC
1 GTATTTCAGTAATTTTACAAACTAAGC
* *
60884347 GTATTTCGGTAATTTTAGTAAACTAA
1 GTATTTCAGTAATTTTA-CAAACTAA
60884373 AGTATTCTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 37 0.82
28 8 0.18
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAACTAAGC
Found at i:60887734 original size:11 final size:11
Alignment explanation
Indices: 60887718--60887743 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
60887708 ACTTGAACAG
60887718 AAATAAAAATA
1 AAATAAAAATA
60887729 AAATAAAAATA
1 AAATAAAAATA
60887740 AAAT
1 AAAT
60887744 TACTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:60894258 original size:56 final size:56
Alignment explanation
Indices: 60894171--60894342 Score: 258
Period size: 56 Copynumber: 3.1 Consensus size: 56
60894161 TGAAGTAGAA
* *
60894171 ATTTTTTTTTATCATTTTAAGGTCTATGGCATGATTGAATGATTGTGTGAAAATTT
1 ATTTATTTTTATCATTTTAAGGTCTATGGCATGATTGCATGATTGTGTGAAAATTT
* * * *
60894227 ATTTATTTTTATCCTTTTAAGGTTTAGGGCATGATTGCATGATTGTATGAAAATTT
1 ATTTATTTTTATCATTTTAAGGTCTATGGCATGATTGCATGATTGTGTGAAAATTT
*
60894283 A-TT-TTTTTATCATTTTAAGGTCTATGGCATGATTGCATGATTATGTGAAAATTT
1 ATTTATTTTTATCATTTTAAGGTCTATGGCATGATTGCATGATTGTGTGAAAATTT
60894337 CATTTA
1 -ATTTA
60894343 GAAATTTTAT
Statistics
Matches: 102, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
54 46 0.45
55 3 0.03
56 53 0.52
ACGTcount: A:0.27, C:0.07, G:0.17, T:0.49
Consensus pattern (56 bp):
ATTTATTTTTATCATTTTAAGGTCTATGGCATGATTGCATGATTGTGTGAAAATTT
Found at i:60895522 original size:50 final size:50
Alignment explanation
Indices: 60895455--60895604 Score: 183
Period size: 50 Copynumber: 3.0 Consensus size: 50
60895445 TAAGATGGTT
* *
60895455 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCATATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
* * ** * *
60895505 TTAGGTCACATGTGTAGTATTAAGTGCAGGCTACTATGTGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
* * ***
60895555 TTAGGTCATGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
60895605 CTTCGGTTAC
Statistics
Matches: 85, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 85 1.00
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
Found at i:60895588 original size:100 final size:100
Alignment explanation
Indices: 60895410--60895590 Score: 274
Period size: 100 Copynumber: 1.8 Consensus size: 100
60895400 ATTGTGAGAA
*
60895410 CACATGTGTAGAACTATGTGCAGGCTACTATGTGTTAAGATGGTTTTAGGTCACGTGTGTAGTAC
1 CACATGTGTAGAACTAAGTGCAGGCTACTATGTGTTAAGATGG-TTTAGGTCACGTGTGTAGTAC
60895475 TAAGTGCAAGCTACTACATGTACCATATAGTTAGGT
65 TAAGTGCAAGCTACTACATGTACCATATAGTTAGGT
* * * *
60895511 CACATGTGTAGTATTAAGTGCAGGCTACTATGTGTATCAGATGG-TTAGGTCATGTGTGTAGTAC
1 CACATGTGTAGAACTAAGTGCAGGCTACTATGTGT-TAAGATGGTTTAGGTCACGTGTGTAGTAC
* *
60895575 TAAGTGTAGGCTACTA
65 TAAGTGCAAGCTACTA
60895591 TGCGTACCAG
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
100 33 0.46
101 32 0.44
102 7 0.10
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (100 bp):
CACATGTGTAGAACTAAGTGCAGGCTACTATGTGTTAAGATGGTTTAGGTCACGTGTGTAGTACT
AAGTGCAAGCTACTACATGTACCATATAGTTAGGT
Found at i:60895823 original size:16 final size:15
Alignment explanation
Indices: 60895802--60895831 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
60895792 GAATGGAGTA
60895802 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
60895818 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
60895832 TAAAATTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:60900020 original size:125 final size:126
Alignment explanation
Indices: 60899679--60900179 Score: 633
Period size: 126 Copynumber: 4.0 Consensus size: 126
60899669 GCCAAGCAGG
* * * *
60899679 AACTACTGTAGAAAAAAAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGTTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATAC
* * * * *
60899744 TCCTTGAAGCATTTTTAACACTATCTCTTCAGAACTGTCTTCTCAAAGTTATTTTTTCAGA
66 TGCTTGAAGCATTTTTAACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGA
*
60899805 AACTATTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATTA
1 AACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCA-TA
* * * * * *
60899870 -TGCTTGAAGCATTTTTTACGCTATTTTTCCAGAACCATCTTCTCAAAATTATTTTTTTAGG
65 CTGCTTGAAGCATTTTTAACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGA
* *
60899931 AACTA-TCGTAGAAAAAGAGCATCCATGTAGGAG-TTTTTTCAGTACTTTTGCTGACAGTGCATA
1 AACTACT-GTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATA
* * *
60899994 CTACTTGAAGCATTTTTAACATTATTTTTTCAGAATCGTCTTCTC--AATTA-TTTTTCAGA
65 CTGCTTGAAGCATTTTTAACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGA
** * * *
60900053 AACTACTGTATTAAAAGAGCGT-CATGTGGGAGC-TTTTTCAGTACTTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATAC
* * * * * *
60900116 TGCTTGAAGCTTTTTTATCACTATTTTTTCAAAATCGTCTTCTCAATATAATTTTTTCA-A
66 TGCTTGAAGCATTTTTAACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGA
60900176 AACT
1 AACT
60900180 CAACCCTAAA
Statistics
Matches: 328, Mismatches: 39, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
121 77 0.23
122 24 0.07
123 14 0.04
124 9 0.03
125 66 0.20
126 137 0.42
127 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (126 bp):
AACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATAC
TGCTTGAAGCATTTTTAACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGA
Found at i:60900278 original size:34 final size:35
Alignment explanation
Indices: 60900231--60900332 Score: 117
Period size: 34 Copynumber: 3.1 Consensus size: 35
60900221 AATTACTTTA
*
60900231 AAAAAATCTTAAACCCTAATTTAATTAATTTTTTT
1 AAAAACTCTTAAACCCTAATTTAATTAATTTTTTT
**
60900266 AAAAACTC-TAAACCC----TTAATTAATTTACTT
1 AAAAACTCTTAAACCCTAATTTAATTAATTTTTTT
* *
60900296 -AAAACCCTTAAAACCTAATTTAATTAATTTTTTT
1 AAAAACTCTTAAACCCTAATTTAATTAATTTTTTT
60900330 AAA
1 AAA
60900333 TTTAAACTCT
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
29 6 0.11
30 19 0.35
34 20 0.37
35 9 0.17
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (35 bp):
AAAAACTCTTAAACCCTAATTTAATTAATTTTTTT
Found at i:60903042 original size:47 final size:47
Alignment explanation
Indices: 60902974--60903191 Score: 175
Period size: 47 Copynumber: 4.7 Consensus size: 47
60902964 TTTGTGGGCT
*
60902974 AGTGTAAGA-CATGTCTGGGACAT-GCATCAACCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAACGACA-TATGAGAGCC
** * * * *
60903020 AGTGTAAGACCATGTCTGGGACATGGCAT--TGGTATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAACG-A--CATATGAGAGCC
* * * *
60903068 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTG-CGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAAC-GAC-ATATGAGAGCC
*
60903114 AGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGATAT--GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAAC--GACATATGAGAGCC
* *
60903161 AGTATAAGACCATGTCTAGGACATGGCATCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCA
60903192 GCACCTTACC
Statistics
Matches: 138, Mismatches: 21, Indels: 25
0.75 0.11 0.14
Matches are distributed among these distances:
46 29 0.21
47 75 0.54
48 27 0.20
49 7 0.05
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAACGACATATGAGAGCC
Found at i:60903132 original size:94 final size:94
Alignment explanation
Indices: 60902971--60903142 Score: 274
Period size: 94 Copynumber: 1.8 Consensus size: 94
60902961 TTGTTTGTGG
*
60902971 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCACATGATGAGAGCCAGTGTAAGACCATGTC
60903036 TGGGACATGGCATTGGTATTGAGACGAGA
66 TGGGACATGGCATTGGTATTGAGACGAGA
* ** * *
60903065 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTGCGA-GATGATAGTCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCAC-ATGATGAGAGCCAGTGTAAGACCATGT
60903129 CTGGGACATGGCAT
65 CTGGGACATGGCAT
60903143 CAACTTGAGA
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
94 70 0.99
95 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACCACATGATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATTGGTATTGAGACGAGA
Found at i:60903175 original size:94 final size:94
Alignment explanation
Indices: 60902978--60903191 Score: 247
Period size: 94 Copynumber: 2.3 Consensus size: 94
60902968 TGGGCTAGTG
*
60902978 TAAGACATGTCTGGGACATGCATCAACCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACA
1 TAAGACATGTCTGGGACATGCATCAACCACATGATGAGAGCCAGTGTAAGACCATGTCTGGGACA
** * *
60903043 TGGCATTGGTATTGAGACGAGAGCTAGTG
66 TGGCATTGCAATTGAGACGAGAGCCAGTA
* ** * *
60903072 TAAGACATGTCTGGGACATGCATCGACTGCGA-GATGATAGTCAGTGTAAGACCATGTCTGGGAC
1 TAAGACATGTCTGGGACATGCATCAACCAC-ATGATGAGAGCCAGTGTAAGACCATGTCTGGGAC
*
60903136 ATGGCA-T-CAACTTGAGA-TATGAGCCAGTA
65 ATGGCATTGCAA-TTGAGACGA-GAGCCAGTA
*
60903165 TAAGACCATGTCTAGGACATGGCATCA
1 TAAGA-CATGTCTGGGACAT-GCATCA
60903192 GCACCTTACC
Statistics
Matches: 102, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
92 2 0.02
93 19 0.19
94 75 0.74
95 6 0.06
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (94 bp):
TAAGACATGTCTGGGACATGCATCAACCACATGATGAGAGCCAGTGTAAGACCATGTCTGGGACA
TGGCATTGCAATTGAGACGAGAGCCAGTA
Found at i:60911940 original size:30 final size:30
Alignment explanation
Indices: 60911904--60911963 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
60911894 GAGAGCCAGT
60911904 GTAAGACCATGTCTGGGACATGGCATCAGC
1 GTAAGACCATGTCTGGGACATGGCATCAGC
60911934 GTAAGACCATGTCTGGGACATGGCATCAGC
1 GTAAGACCATGTCTGGGACATGGCATCAGC
60911964 CTTGAGACGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.20
Consensus pattern (30 bp):
GTAAGACCATGTCTGGGACATGGCATCAGC
Found at i:60912033 original size:46 final size:47
Alignment explanation
Indices: 60911929--60912100 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 47
60911919 GGACATGGCA
* * *
60911929 TCAGCGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGACGAGAG
1 TCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGACGAGAG
* *
60911977 TTAGTGTAAGA-CATGTCTGGGACATGTATCGGCCTCGAGACGTA-AG
1 TCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACG-AGAG
* * *
60912023 CCAGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGATGATAG
1 TCAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGACGAGAG
*
60912069 TCAATGTAAGACCATGTCTGGGACATGGCATC
1 TCAGTGTAAGACCATGTCTGGGACAT-GCATC
60912101 AACTTGAGAT
Statistics
Matches: 108, Mismatches: 11, Indels: 10
0.84 0.09 0.08
Matches are distributed among these distances:
45 3 0.03
46 62 0.57
47 29 0.27
48 14 0.13
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (47 bp):
TCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACGAGAG
Found at i:60912110 original size:47 final size:48
Alignment explanation
Indices: 60911934--60912146 Score: 190
Period size: 47 Copynumber: 4.5 Consensus size: 48
60911924 TGGCATCAGC
* * ** *
60911934 GTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGACGA-GAGTTAGT
1 GTAAGACCATGTCTGGGACATGGCATCA-CCTCGAGACGATAAGCCAAT
* * *
60911982 GTAAGA-CATGTCTGGGACAT-GTATCGGCCTCGAGACG-TAAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATC-ACCTCGAGACGATAAGCCAAT
** * *
60912028 GTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGAT-AGTCAAT
1 GTAAGACCATGTCTGGGACATGGCATCACCT-CGAGACGATAAGCCAAT
* * * *
60912074 GTAAGACCATGTCTGGGACATGGCATCAACTTGAGA-TATGAGCCAAT
1 GTAAGACCATGTCTGGGACATGGCATCACCTCGAGACGATAAGCCAAT
*
60912121 GTAAGACCATGTCTAGGACATGGCAT
1 GTAAGACCATGTCTGGGACATGGCAT
60912147 TGGTACCTTA
Statistics
Matches: 141, Mismatches: 17, Indels: 15
0.82 0.10 0.09
Matches are distributed among these distances:
45 3 0.02
46 61 0.43
47 64 0.45
48 13 0.09
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACATGGCATCACCTCGAGACGATAAGCCAAT
Found at i:60912118 original size:93 final size:93
Alignment explanation
Indices: 60911934--60912142 Score: 226
Period size: 93 Copynumber: 2.2 Consensus size: 93
60911924 TGGCATCAGC
* * *
60911934 GTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGACGAGAGTTAGTGTAAGACATGTCTGGGA
1 GTAAGACCATGTCTGGGACAT-GCATCAGCCTCGAGACGAGAGTCAATGTAAGACATGTCTGGGA
* ** * *
60911999 CATGTATCGGCCTCGAGACGTAAGCCAGT
65 CATGCATCGAACTCGAGACATAAGCCAAT
* * *
60912028 GTAAGA-CATGTCTGGGACATGCATC-GGCTACGAGATGATAGTCAATGTAAGACCATGTCTGGG
1 GTAAGACCATGTCTGGGACATGCATCAGCCT-CGAGACGAGAGTCAATGTAAGA-CATGTCTGGG
* * *
60912091 ACATGGCATC-AACTTGAGATATGAGCCAAT
64 ACAT-GCATCGAACTCGAGACATAAGCCAAT
*
60912121 GTAAGACCATGTCTAGGACATG
1 GTAAGACCATGTCTGGGACATG
60912143 GCATTGGTAC
Statistics
Matches: 96, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
91 3 0.03
92 22 0.23
93 47 0.49
94 24 0.25
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (93 bp):
GTAAGACCATGTCTGGGACATGCATCAGCCTCGAGACGAGAGTCAATGTAAGACATGTCTGGGAC
ATGCATCGAACTCGAGACATAAGCCAAT
Found at i:60916684 original size:15 final size:15
Alignment explanation
Indices: 60916664--60916697 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
60916654 TTTGCTCTCC
* *
60916664 TATTTTCTTTGTTTT
1 TATTTTCTATCTTTT
60916679 TATTTTCTATCTTTT
1 TATTTTCTATCTTTT
60916694 TATT
1 TATT
60916698 CTATAGTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.09, G:0.03, T:0.76
Consensus pattern (15 bp):
TATTTTCTATCTTTT
Found at i:60921299 original size:40 final size:40
Alignment explanation
Indices: 60921240--60921447 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
60921230 CAATTGAATG
* * * *
60921240 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
60921280 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
60921320 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
60921360 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
60921400 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
60921440 ATATCCGG
1 ATATCCGG
60921448 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:60921378 original size:80 final size:80
Alignment explanation
Indices: 60921241--60921447 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
60921231 AATTGAATGA
* * ** * * *
60921241 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
60921306 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
60921319 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
60921384 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
60921401 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
60921448 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:60923121 original size:8 final size:8
Alignment explanation
Indices: 60923096--60923138 Score: 61
Period size: 8 Copynumber: 5.4 Consensus size: 8
60923086 GTCAAGCACA
60923096 AAGAAGAG
1 AAGAAGAG
60923104 AAGCAA-AG
1 AAG-AAGAG
*
60923112 AAGATGAG
1 AAGAAGAG
60923120 AAGAAGAG
1 AAGAAGAG
60923128 AAGAAGAG
1 AAGAAGAG
60923136 AAG
1 AAG
60923139 GATGATTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 1 0.03
8 28 0.90
9 2 0.06
ACGTcount: A:0.60, C:0.02, G:0.35, T:0.02
Consensus pattern (8 bp):
AAGAAGAG
Found at i:60927596 original size:39 final size:39
Alignment explanation
Indices: 60927542--60927706 Score: 233
Period size: 39 Copynumber: 4.2 Consensus size: 39
60927532 GATATTGATG
* *
60927542 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAAGCTATGTGCTGGAAT
*
60927581 TATATTCC-TACTTAGGGTCCGCAAGCTATGTGCTGGAAT
1 TATA-TCCGGACTTAGGGTCCGCAAGCTATGTGCTGGAAT
*
60927620 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAAGCTATGTGCTGGAAT
* ** *
60927659 TATATCCGGACTTAAGGTCCGCAAGCTACATGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAAGCTATGTGCTGGAAT
*
60927698 TATGTCCGG
1 TATATCCGG
60927707 GCTAAAGTCC
Statistics
Matches: 114, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
38 3 0.03
39 108 0.95
40 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAAGCTATGTGCTGGAAT
Found at i:60931727 original size:34 final size:33
Alignment explanation
Indices: 60931676--60931748 Score: 101
Period size: 34 Copynumber: 2.2 Consensus size: 33
60931666 TCAGTCTAAA
*
60931676 TATCAGTGTGGGACTTAGCCCAATTTCGTAACAG
1 TATCAGTGTGGGACTTAGCCCAATTTAG-AACAG
* * *
60931710 TATCGGTGTGGGGCTTAGCCCATTTTAGAACAG
1 TATCAGTGTGGGACTTAGCCCAATTTAGAACAG
60931743 TATCAG
1 TATCAG
60931749 AAATGCATAC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 10 0.29
34 24 0.71
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (33 bp):
TATCAGTGTGGGACTTAGCCCAATTTAGAACAG
Found at i:60941420 original size:40 final size:40
Alignment explanation
Indices: 60941361--60941619 Score: 382
Period size: 40 Copynumber: 6.5 Consensus size: 40
60941351 CATTTGAATG
*
60941361 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
60941401 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
60941441 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
60941481 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
60941521 ATGTCCGGGCTAAGACCCGAAGGCATTTGTGC--GTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * * *
60941559 ATGTCCGGGTTAAGACCCGAAGGAAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
60941599 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
60941620 AAACTTGGGT
Statistics
Matches: 205, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
38 35 0.17
39 12 0.06
40 158 0.77
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:60949520 original size:40 final size:40
Alignment explanation
Indices: 60949465--60949728 Score: 358
Period size: 40 Copynumber: 6.5 Consensus size: 40
60949455 CATTTGAATG
*
60949465 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
60949505 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
60949545 ATATCC-GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
60949584 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
60949624 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-ATGTGTGGATTCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GT-T-G--T-T
* * * * * *
60949669 ATGTCCGGGTTAAGACCCG-AGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
60949708 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
60949729 AAACTTGGGT
Statistics
Matches: 203, Mismatches: 11, Indels: 21
0.86 0.05 0.09
Matches are distributed among these distances:
37 1 0.00
38 9 0.04
39 48 0.24
40 112 0.55
41 1 0.00
42 2 0.01
44 12 0.06
45 18 0.09
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:60949606 original size:79 final size:80
Alignment explanation
Indices: 60949465--60949728 Score: 358
Period size: 79 Copynumber: 3.3 Consensus size: 80
60949455 CATTTGAATG
*
60949465 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
60949530 TTTGTGCGAGTTGTT
66 TTTGTGCGAGTTGTT
60949545 ATATCC-GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
*
60949609 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGTT
* *
60949624 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-ATGTGTGGATTCTATGTCCGGGTTAAGACCCG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GT-T-G--T-TATATCCGGGCTAAGACCCG
* * * *
60949688 -AGGCAATTGGGCGTGTGGTT
60 AAGGCATTTGTGCGAGTTGTT
60949708 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
60949729 AAACTTGGGT
Statistics
Matches: 167, Mismatches: 9, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
79 78 0.47
80 33 0.20
81 1 0.01
82 2 0.01
83 13 0.08
84 22 0.13
85 18 0.11
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGTT
Found at i:60954159 original size:39 final size:39
Alignment explanation
Indices: 60954115--60954195 Score: 135
Period size: 39 Copynumber: 2.1 Consensus size: 39
60954105 GCAAAAGAGG
* *
60954115 AAGTTGTTGCTAAAGAAGAAGAATTTACTGAAAATAAGA
1 AAGTTGTTACTAAAGAAGAAGAAGTTACTGAAAATAAGA
*
60954154 AAGTTGTTACTGAAGAAGAAGAAGTTACTGAAAATAAGA
1 AAGTTGTTACTAAAGAAGAAGAAGTTACTGAAAATAAGA
60954193 AAG
1 AAG
60954196 AAAAAGAAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.49, C:0.05, G:0.22, T:0.23
Consensus pattern (39 bp):
AAGTTGTTACTAAAGAAGAAGAAGTTACTGAAAATAAGA
Found at i:60954164 original size:21 final size:19
Alignment explanation
Indices: 60954139--60954195 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 19
60954129 GAAGAAGAAT
60954139 TTACTGAAAATAAGAAAGTTG
1 TTACTGAAAATAAGAAAG--G
*
60954160 TTACTGAAGAAGAAG-AA-G
1 TTACTGAA-AATAAGAAAGG
60954178 TTACTGAAAATAAGAAAG
1 TTACTGAAAATAAGAAAG
60954196 AAAAAGAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
17 5 0.16
18 11 0.35
21 10 0.32
22 5 0.16
ACGTcount: A:0.51, C:0.05, G:0.21, T:0.23
Consensus pattern (19 bp):
TTACTGAAAATAAGAAAGG
Found at i:60954196 original size:21 final size:21
Alignment explanation
Indices: 60954133--60954197 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
60954123 GCTAAAGAAG
*
60954133 AAGAATTTACTGAAAATAAGA
1 AAGAAGTTACTGAAAATAAGA
** *
60954154 AAGTTGTTACTG--AAGAAG-
1 AAGAAGTTACTGAAAATAAGA
60954172 AAGAAGTTACTGAAAATAAGA
1 AAGAAGTTACTGAAAATAAGA
60954193 AAGAA
1 AAGAA
60954198 AAAGAAGAAG
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 10 0.29
19 5 0.15
20 5 0.15
21 14 0.41
ACGTcount: A:0.54, C:0.05, G:0.20, T:0.22
Consensus pattern (21 bp):
AAGAAGTTACTGAAAATAAGA
Found at i:60954205 original size:36 final size:37
Alignment explanation
Indices: 60954127--60954211 Score: 100
Period size: 39 Copynumber: 2.3 Consensus size: 37
60954117 GTTGTTGCTA
* ** **
60954127 AAGAAGAAGAATTTACTGAAAATAAGAAAGTTGTTACTG
1 AAGAAGAAGAAGTTACTGAAAATAAGAAA--TGAAAAAG
60954166 AAGAAGAAGAAGTTACTGAAAATAAGAAA-GAAAAAG
1 AAGAAGAAGAAGTTACTGAAAATAAGAAATGAAAAAG
60954202 AAGAAGAAGA
1 AAGAAGAAGA
60954212 TTATGTTGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
36 13 0.32
39 28 0.68
ACGTcount: A:0.58, C:0.04, G:0.22, T:0.16
Consensus pattern (37 bp):
AAGAAGAAGAAGTTACTGAAAATAAGAAATGAAAAAG
Found at i:60959866 original size:36 final size:36
Alignment explanation
Indices: 60959766--60959891 Score: 157
Period size: 36 Copynumber: 3.4 Consensus size: 36
60959756 TCCCAGTTTT
*
60959766 GTGTGATTTCGATTGGACTAGCTCTT-TAGAGCCAT-TG
1 GTGTG-TTTCGGTTGGACTAGCTCTTAT-GAG-CATCTG
* *
60959803 GTGTGTTATCGGGTGGACCAGCTCTTATGAGCATCTG
1 GTGTGTT-TCGGTTGGACTAGCTCTTATGAGCATCTG
* *
60959840 GTGTGTTTCGGTTGGATTAGCTCTTATGAGCATCTA
1 GTGTGTTTCGGTTGGACTAGCTCTTATGAGCATCTG
60959876 GTGTGTTTCGGTTGGA
1 GTGTGTTTCGGTTGGA
60959892 ATATCGATGT
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
36 46 0.58
37 32 0.41
38 1 0.01
ACGTcount: A:0.16, C:0.15, G:0.31, T:0.38
Consensus pattern (36 bp):
GTGTGTTTCGGTTGGACTAGCTCTTATGAGCATCTG
Found at i:60963018 original size:46 final size:46
Alignment explanation
Indices: 60962936--60963052 Score: 130
Period size: 46 Copynumber: 2.5 Consensus size: 46
60962926 AAGTCGACTC
* * *
60962936 CATGTCCCATACATGGTCTTACATTGACTATCATCTCGTAG-CTGATG
1 CATGTCCCAAACAT-GTCTTACACTGACTATCATCTCG-AGCCCGATG
* *
60962983 CATGTCCCAAACATGTCTTACACTGGCT-TACATCTCGAGCCCGTTG
1 CATGTCCCAAACATGTCTTACACTGACTAT-CATCTCGAGCCCGATG
* *
60963029 CATGTCCTAGACATGTCTTACACT
1 CATGTCCCAAACATGTCTTACACT
60963053 AGCCCTCGTC
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
45 3 0.05
46 45 0.74
47 13 0.21
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (46 bp):
CATGTCCCAAACATGTCTTACACTGACTATCATCTCGAGCCCGATG
Found at i:60963525 original size:30 final size:29
Alignment explanation
Indices: 60963485--60963546 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
60963475 ATTCACTTCT
* *
60963485 TTGGTAAAATGACCATTTTGCCCCTAGACC
1 TTGGCAAAATGACCATTTTACCCCTAG-CC
* *
60963515 TTGGCAAAATGACTATTTTACCCTTAGCC
1 TTGGCAAAATGACCATTTTACCCCTAGCC
60963544 TTG
1 TTG
60963547 AAAATTGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (29 bp):
TTGGCAAAATGACCATTTTACCCCTAGCC
Found at i:60966659 original size:27 final size:27
Alignment explanation
Indices: 60966629--60966701 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 27
60966619 TACTGAAATG
60966629 CCCTCGATTTGTAAAATTACCATTTTA
1 CCCTCGATTTGTAAAATTACCATTTTA
**
60966656 CCCTC-AGTTTACAAAATTACCATTTTA
1 CCCTCGA-TTTGTAAAATTACCATTTTA
*
60966683 CCCTCGA-TTGTGAAATTAC
1 CCCTCGATTTGTAAAATTAC
60966702 TAAAATACCC
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 10 0.26
27 28 0.72
28 1 0.03
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (27 bp):
CCCTCGATTTGTAAAATTACCATTTTA
Found at i:60966713 original size:27 final size:26
Alignment explanation
Indices: 60966683--60966872 Score: 138
Period size: 27 Copynumber: 7.1 Consensus size: 26
60966673 TACCATTTTA
* *
60966683 CCCTCGATTGTGAAATTACTAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
60966710 CCCTG-TAGGATAGAATTACCAAAATAC
1 CCCTGAT-TG-TAAAATTACCAAAATAC
*
60966737 CCCTAGTTTGTAAAATTACCAAAATA-
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
60966763 CCCTAGTTTGTAAAATTACCGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* * * *
60966790 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCT-GATTGTAAAATTACCAAAATAC
*
60966816 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-GA-TTGTAAAATTACCAAAATAC
60966844 CCCTGATT-TACAAAATTA-CAGAAATAC
1 CCCTGATTGT--AAAATTACCA-AAATAC
60966871 CC
1 CC
60966873 TTGACTTTTT
Statistics
Matches: 136, Mismatches: 17, Indels: 20
0.79 0.10 0.12
Matches are distributed among these distances:
25 2 0.01
26 34 0.25
27 93 0.68
28 6 0.04
29 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (26 bp):
CCCTGATTGTAAAATTACCAAAATAC
Found at i:60966738 original size:53 final size:53
Alignment explanation
Indices: 60966681--60966845 Score: 156
Period size: 54 Copynumber: 3.1 Consensus size: 53
60966671 ATTACCATTT
* * * *
60966681 TACCCTCGATTGTGAAATTACTAAAATACCCCT-GTAGGATAGAATTACCAAAA
1 TACCCTAGTTTGTGAAATTACCAAAATACCCCTAGTAGG-TAAAATTACCAAAA
* ** *
60966734 TACCCCTAGTTTGTAAAATTACCAAAATA-CCCTAGTTTGTAAAATTACCGAAA
1 TA-CCCTAGTTTGTGAAATTACCAAAATACCCCTAGTAGGTAAAATTACCAAAA
* * * **
60966787 TACCACTGGTTTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTAGTTTGTGAAATTACCAAAATACCCCT-AGTAGGTAAAATTACCAAAA
60966841 TACCC
1 TACCC
60966846 CTGATTTACA
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.02
53 46 0.48
54 47 0.49
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (53 bp):
TACCCTAGTTTGTGAAATTACCAAAATACCCCTAGTAGGTAAAATTACCAAAA
Found at i:60966765 original size:80 final size:80
Alignment explanation
Indices: 60966654--60966845 Score: 192
Period size: 80 Copynumber: 2.4 Consensus size: 80
60966644 ATTACCATTT
* ** *** * * * *
60966654 TACCCTCAGTTTACAAAATTACCATTTTACCCTCGATTGTGAAATTACTAAAATACCCCT-GTAG
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTAGATTGTAAAATTACCAAAATACCACTGGTAG
60966718 GAT-AGAATTACCAAAA
66 G-TGA-AATTACCAAAA
* * * *
60966734 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCGAAATACCACTGGTT
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTAGATTGTAAAATTACCAAAATACCACTGGTA
* *
60966798 TGTGAAATTACCGAAA
65 GGTGAAATTACCAAAA
60966814 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
60966846 CTGATTTACA
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
79 1 0.01
80 87 0.94
81 5 0.05
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (80 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTAGATTGTAAAATTACCAAAATACCACTGGTAG
GTGAAATTACCAAAA
Found at i:60966860 original size:54 final size:53
Alignment explanation
Indices: 60966723--60966873 Score: 196
Period size: 54 Copynumber: 2.8 Consensus size: 53
60966713 TGTAGGATAG
* *
60966723 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAAAATTACCGAAATACCCTAATTTGTAA
* * * *
60966776 AATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCT-AATTTGTAA
** *
60966830 AATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCT
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCT
60966874 TGACTTTTTA
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
53 38 0.46
54 45 0.54
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (53 bp):
AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTAATTTGTAA
Found at i:60966946 original size:110 final size:107
Alignment explanation
Indices: 60966720--60966955 Score: 251
Period size: 110 Copynumber: 2.2 Consensus size: 107
60966710 CCCTGTAGGA
** * *
60966720 TAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCGA
1 TAGAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTACTTTGTAAAATTACAGA
***
60966785 AATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTG
66 AATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTG
* *
60966827 TAAAATTACCAAAATACCCCT-GATTTACAAAATTA-CAGAAATACCCTTGACTTTTTAAAAATT
1 TAGAATTACCAAAATACCCCTAG-TTTACAAAATTACCA-AAATACCC-T-ACTTTGT-AAAATT
* * ** ***
60966890 ATAGAAATACCATTGGTTTACAAAATTACTTAAATACCCTTGGTTTG
61 ACAGAAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTG
* *
60966937 TAGATTTACCAAAACACCC
1 TAGAATTACCAAAATACCC
60966956 TTGTAGGATG
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
106 3 0.03
107 38 0.36
108 1 0.01
109 5 0.05
110 58 0.55
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (107 bp):
TAGAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTACTTTGTAAAATTACAGA
AATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTG
Found at i:60967902 original size:25 final size:24
Alignment explanation
Indices: 60967864--60967933 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
60967854 AGGAAGTGCT
*
60967864 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
60967888 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
60967913 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
60967934 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:60967946 original size:24 final size:24
Alignment explanation
Indices: 60967863--60967946 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
60967853 GAGGAAGTGC
* *
60967863 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
60967888 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
60967912 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
60967936 TAAAAGAGGCT
1 TAAAAG-GGCT
60967947 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:60968015 original size:56 final size:56
Alignment explanation
Indices: 60967948--60968061 Score: 228
Period size: 56 Copynumber: 2.0 Consensus size: 56
60967938 AAAGAGGCTA
60967948 GGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAGAGTTTGGTTGGGTG
1 GGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAGAGTTTGGTTGGGTG
60968004 GGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAGAGTTTGGTTGGGTG
1 GGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAGAGTTTGGTTGGGTG
60968060 GG
1 GG
60968062 TTGAGTTATT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.21, C:0.16, G:0.35, T:0.28
Consensus pattern (56 bp):
GGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAGAGTTTGGTTGGGTG
Found at i:60968253 original size:31 final size:31
Alignment explanation
Indices: 60968204--60968286 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
60968194 CGCTTACAGT
*
60968204 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
60968234 AAAGGCTTCGGCCCAGTGATATGAATTATGA
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
60968265 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
60968287 TCAAGACTGA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 16 0.31
31 35 0.69
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATTATGA
Found at i:60972850 original size:21 final size:21
Alignment explanation
Indices: 60972820--60972859 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
60972810 CACTTGACAT
* *
60972820 AGGGGTACACGCTCGTGTGAA
1 AGGGGCACACGCCCGTGTGAA
60972841 AGGGGCACACGCCCGTGTG
1 AGGGGCACACGCCCGTGTG
60972860 GCCAATTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (21 bp):
AGGGGCACACGCCCGTGTGAA
Found at i:60974147 original size:46 final size:46
Alignment explanation
Indices: 60974062--60974234 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
60974052 TTTCATAGCT
* * *
60974062 GATGCATGTCCCAGACATGTCATACACTGGCT-TATGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCGAGGCC
** * **
60974108 -ATTGCATGTCTTAGACATGTCTTACACTAGCTCTCGTCTCAATACC
1 GA-TGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGAGGCC
* * *
60974154 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGT-CTCGAGGCC
60974202 GATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTC
60974235 ACACACGAAT
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 51 0.49
47 28 0.27
48 24 0.23
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGAGGCC
Found at i:60977590 original size:5 final size:5
Alignment explanation
Indices: 60977580--60977623 Score: 72
Period size: 5 Copynumber: 8.8 Consensus size: 5
60977570 TTTTCTTACA
60977580 ATTTT ATTTT ATTTT A-TTT ATTTT ATTTT ATTTT ATTATT ATTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATT-TT ATTT
60977624 ATTAATTTAC
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.11
5 28 0.76
6 5 0.14
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:60977601 original size:14 final size:15
Alignment explanation
Indices: 60977580--60977623 Score: 72
Period size: 14 Copynumber: 2.9 Consensus size: 15
60977570 TTTTCTTACA
60977580 ATTTTATTTTATTTT
1 ATTTTATTTTATTTT
60977595 A-TTTATTTTATTTT
1 ATTTTATTTTATTTT
60977609 ATTTTATTATTATTT
1 ATTTTATT-TTATTT
60977624 ATTAATTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.52
15 7 0.26
16 6 0.22
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
ATTTTATTTTATTTT
Found at i:60977604 original size:19 final size:19
Alignment explanation
Indices: 60977580--60977616 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
60977570 TTTTCTTACA
60977580 ATTTTATTTTATTTTATTT
1 ATTTTATTTTATTTTATTT
60977599 ATTTTATTTTATTTTATT
1 ATTTTATTTTATTTTATT
60977617 ATTATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (19 bp):
ATTTTATTTTATTTTATTT
Found at i:60978869 original size:49 final size:49
Alignment explanation
Indices: 60978769--60978870 Score: 152
Period size: 49 Copynumber: 2.1 Consensus size: 49
60978759 ACCATCCCAA
* **
60978769 TTTCTCATGGGGCGGTCAAGGAAATCAAAGACCACAACATCCTTTGAGT
1 TTTCTCATAGGGCGGTCAAGGAAATCAAAGACCACAACATCCTCAGAGT
*
60978818 TTTCTCGTAGGGCGGTCAAGGAAATCAAAGACCACAACATCCTCCAG-GT
1 TTTCTCATAGGGCGGTCAAGGAAATCAAAGACCACAACATCCT-CAGAGT
60978867 TTTC
1 TTTC
60978871 AACAACCACC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
49 47 0.98
50 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (49 bp):
TTTCTCATAGGGCGGTCAAGGAAATCAAAGACCACAACATCCTCAGAGT
Found at i:60986772 original size:37 final size:37
Alignment explanation
Indices: 60986719--60986821 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
60986709 CGAATAGTCC
*
60986719 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
60986756 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
60986793 CCACACGTAGTCGTCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
60986822 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:60987020 original size:48 final size:48
Alignment explanation
Indices: 60986962--60987194 Score: 403
Period size: 48 Copynumber: 4.9 Consensus size: 48
60986952 ATATACACAC
*
60986962 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
60987010 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60987058 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
60987106 ATCTCTTACATATTTCACATTAGACATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
60987154 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
60987195 CACATATATA
Statistics
Matches: 176, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 176 1.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:60990553 original size:40 final size:40
Alignment explanation
Indices: 60990468--60990618 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
60990458 AATTGAATGA
* * *
60990468 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
60990508 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
60990549 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
60990588 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
60990619 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:60990632 original size:40 final size:40
Alignment explanation
Indices: 60990504--60990634 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
60990494 TATGCTGGAA
* * *
60990504 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
60990544 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
60990584 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
60990624 ATTATATCCGG
1 ATTATATCCGG
60990635 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:60993923 original size:40 final size:40
Alignment explanation
Indices: 60993838--60993988 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
60993828 AATTGAATGA
* * *
60993838 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
60993878 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
60993919 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
60993958 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
60993989 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:60994002 original size:40 final size:40
Alignment explanation
Indices: 60993875--60994004 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
60993865 ATGCTGGAAA
* * * *
60993875 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
60993915 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
60993955 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
60993995 TTATATCCGG
1 TTATATCCGG
60994005 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:61001938 original size:40 final size:40
Alignment explanation
Indices: 61001853--61002003 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
61001843 AATTGAATGA
* * *
61001853 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
61001893 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
61001934 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
61001973 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
61002004 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:61002017 original size:40 final size:40
Alignment explanation
Indices: 61001889--61002019 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
61001879 TATGCTGGAA
* * *
61001889 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
61001929 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
61001969 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
61002009 ATTATATCCGG
1 ATTATATCCGG
61002020 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:61007965 original size:28 final size:28
Alignment explanation
Indices: 61007934--61008000 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
61007924 CATAGATACG
* *
61007934 TATTTTTATTTTTATTTGATTTTTAC-TA
1 TATTTTTATTTTAATTT-ATTTTAACTTA
**
61007962 TATTTGAATTTTAATTTATTTTAACTTA
1 TATTTTTATTTTAATTTATTTTAACTTA
*
61007990 TTTTTTTATTT
1 TATTTTTATTT
61008001 CAATGTATGA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
27 7 0.23
28 24 0.77
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (28 bp):
TATTTTTATTTTAATTTATTTTAACTTA
Found at i:61007981 original size:16 final size:16
Alignment explanation
Indices: 61007944--61007982 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
61007934 TATTTTTATT
* *
61007944 TTTATTTGATTTTTAC
1 TTTATTTGAATTTTAA
*
61007960 TATATTTGAATTTTAA
1 TTTATTTGAATTTTAA
61007976 TTTATTT
1 TTTATTT
61007983 TAACTTATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (16 bp):
TTTATTTGAATTTTAA
Found at i:61012606 original size:2 final size:2
Alignment explanation
Indices: 61012594--61012628 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
61012584 AAAATGCTTA
*
61012594 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
61012629 AACTCATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:61015106 original size:44 final size:44
Alignment explanation
Indices: 61015042--61015182 Score: 132
Period size: 42 Copynumber: 3.3 Consensus size: 44
61015032 GATGTGTTAT
** *
61015042 CGTGTAAGACCACATATGGGATGTTGGCATCGAT-TTGTGATTTA
1 CGTGTAAGACCATGTATGGGAAGTTGGCATCGATATT-TGATTTA
* * *
61015086 TGTGTAAGACCATGTTTGGGACA-TTGGCATAG-TATTTGATTT-
1 CGTGTAAGACCATGTATGGGA-AGTTGGCATCGATATTTGATTTA
* *
61015128 CGTGTAAGACCCTGTCTGGGACAG-TGGCATCGATATTTGA-TTA
1 CGTGTAAGACCATGTATGGGA-AGTTGGCATCGATATTTGATTTA
*
61015171 CATGTAAGACCA
1 CGTGTAAGACCA
61015183 CGCCTGAGAC
Statistics
Matches: 80, Mismatches: 12, Indels: 11
0.78 0.12 0.11
Matches are distributed among these distances:
42 29 0.36
43 24 0.30
44 27 0.34
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (44 bp):
CGTGTAAGACCATGTATGGGAAGTTGGCATCGATATTTGATTTA
Found at i:61015165 original size:43 final size:43
Alignment explanation
Indices: 61015066--61015182 Score: 139
Period size: 42 Copynumber: 2.7 Consensus size: 43
61015056 TATGGGATGT
* * *
61015066 TGGCATCGAT-TTGTGATTTATGTGTAAGACCATGTTTGGGACAT
1 TGGCATCGATATT-TGATTT-CGTGTAAGACCATGTCTGGGACAG
* *
61015110 TGGCATAG-TATTTGATTTCGTGTAAGACCCTGTCTGGGACAG
1 TGGCATCGATATTTGATTTCGTGTAAGACCATGTCTGGGACAG
* *
61015152 TGGCATCGATATTTGATTACATGTAAGACCA
1 TGGCATCGATATTTGATTTCGTGTAAGACCA
61015183 CGCCTGAGAC
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
42 27 0.44
43 26 0.42
44 9 0.15
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.35
Consensus pattern (43 bp):
TGGCATCGATATTTGATTTCGTGTAAGACCATGTCTGGGACAG
Found at i:61015199 original size:43 final size:43
Alignment explanation
Indices: 61015042--61015200 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
61015032 GATGTGTTAT
* * *
61015042 CGTGTAAGACCACATATGGGATGTTGGCATCGAT-TTGTGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTA
* * * * * *
61015086 TGTGTAAGACCATGTTTGGGACATTGGCATAG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
61015128 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTA
* * *
61015171 CATGTAAGACCACGCCTGAGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
61015201 TGTACGAACT
Statistics
Matches: 92, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 28 0.30
43 36 0.39
44 28 0.30
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:61017753 original size:15 final size:17
Alignment explanation
Indices: 61017735--61017766 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
61017725 TAGCATGTTT
61017735 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
61017750 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
61017767 CAAGTGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:61023967 original size:26 final size:28
Alignment explanation
Indices: 61023912--61023967 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
61023902 ATTTTAATTT
*
61023912 AATTTAATATTAAGATAAGTATTAAACTA
1 AATTTAATATTAAGAT-ACTATTAAACTA
61023941 AATTTAATATTAA-AT-CTATTAAACTA
1 AATTTAATATTAAGATACTATTAAACTA
61023967 A
1 A
61023968 TATTATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 11 0.42
28 2 0.08
29 13 0.50
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.39
Consensus pattern (28 bp):
AATTTAATATTAAGATACTATTAAACTA
Found at i:61026340 original size:18 final size:18
Alignment explanation
Indices: 61026317--61026368 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
61026307 GAAACTCTAT
61026317 ATCCTTCTGGGATTTTAA
1 ATCCTTCTGGGATTTTAA
**
61026335 ATCCTTCTAAGATTTTAA
1 ATCCTTCTGGGATTTTAA
61026353 ATCCTT-TAGGGATTTT
1 ATCCTTCT-GGGATTTT
61026369 GATATAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 1 0.03
18 28 0.97
ACGTcount: A:0.25, C:0.15, G:0.13, T:0.46
Consensus pattern (18 bp):
ATCCTTCTGGGATTTTAA
Found at i:61042276 original size:50 final size:50
Alignment explanation
Indices: 61042157--61042445 Score: 269
Period size: 50 Copynumber: 5.8 Consensus size: 50
61042147 AACTGAAGCT
* * * * * * *
61042157 ATCTGGTA-ACATAATAGCTTGCACTTAGTACTATACATGCGACC-AACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* *
61042205 ACCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAGGTGACCTAACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * **
61042255 ATCTGATACACGTAGTGGCCTGCACTTAGTACTACACACGTGA-TTGAAGTT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CC
* * * * * * *
61042306 GTCGGGTACACATAGTAGCCTGCACTAAGTACTACACATGCGACCTAACT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* *
61042356 ATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACC
*** * *
61042408 ATCTTAAACACATAGTAGCCTGCACATAGTACTACACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
61042446 TGTGTTCTCA
Statistics
Matches: 194, Mismatches: 40, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
48 7 0.04
49 31 0.16
50 83 0.43
51 37 0.19
52 36 0.19
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:61042351 original size:101 final size:101
Alignment explanation
Indices: 61042209--61042394 Score: 300
Period size: 101 Copynumber: 1.8 Consensus size: 101
61042199 CCAACAACCT
* * * *
61042209 GGTACACGTAGTAGCCTGCACTTAGTACTACACAGGTGACCTAACCATCTGATACACGTAGTGGC
1 GGTACACATAGTAGCCTGCACTAAGTACTACACAGGCGACCTAACCATCTGATACACGTAGTAGC
61042274 CTGCACTTAGTACTACACACGTGATTGAAGTTGTCG
66 CTGCACTTAGTACTACACACGTGATTGAAGTTGTCG
* * * *
61042310 GGTACACATAGTAGCCTGCACTAAGTACTACACATGCGACCTAACTATCTGGTACATGTAGTAGC
1 GGTACACATAGTAGCCTGCACTAAGTACTACACAGGCGACCTAACCATCTGATACACGTAGTAGC
61042375 CTGCACTTAGTACTACACAC
66 CTGCACTTAGTACTACACAC
61042395 ATGACCTAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 77 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (101 bp):
GGTACACATAGTAGCCTGCACTAAGTACTACACAGGCGACCTAACCATCTGATACACGTAGTAGC
CTGCACTTAGTACTACACACGTGATTGAAGTTGTCG
Found at i:61048861 original size:16 final size:15
Alignment explanation
Indices: 61048837--61048866 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
61048827 AACTGTTTTA
61048837 TTACAAATTTCACTC
1 TTACAAATTTCACTC
61048852 TTACATAATTTCACT
1 TTACA-AATTTCACT
61048867 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:61049150 original size:49 final size:50
Alignment explanation
Indices: 61049078--61049355 Score: 195
Period size: 50 Copynumber: 5.5 Consensus size: 50
61049068 CTAGTACTCA
* * *
61049078 TAGTAGCCTGCATTTAGTACTACACATGCGACC-AATAAT-TCAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCT-AATACACG
* * * * *
61049127 TAGTAGCCTGAAGTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTAATACACG
* * * *** *** * *
61049177 TAGTGGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCT-AA-CAATCTAATACACG
* * * ** *
61049228 TAGTAGCCTGCACTTAGTACTACACATGCCACCTAACTATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTAATACACG
* ** * *
61049278 TAGTAGTCTGCACTTAGTACTACACACATGACCTAAAACCATCTTAA-ACACA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCT--AACAATC-TAATACACG
*
61049330 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
61049356 TGTGTTCTCA
Statistics
Matches: 180, Mismatches: 41, Indels: 13
0.77 0.18 0.06
Matches are distributed among these distances:
49 30 0.17
50 78 0.43
51 37 0.21
52 34 0.19
53 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTAATACACG
Found at i:61049312 original size:50 final size:50
Alignment explanation
Indices: 61049121--61049355 Score: 206
Period size: 50 Copynumber: 4.6 Consensus size: 50
61049111 AATAATTCAA
* * * * *
61049121 TACACGTAGTAGCCTGAAGTTAGTACTACACACGTGACCTAACCATCTGA
1 TACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACTATCTGG
* * * * * *
61049171 TACACGTAGTGGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACATGACCT-AA-CTATCTGG
* *
61049222 TACGCATAGTAGCCTGCACTTAGTACT--ACACATGCCACCTAACTATCTGG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACATG--ACCTAACTATCTGG
* * * **
61049272 TACATGTAGTAGTCTGCACTTAGTACTACACACATGACCTAAAACCATCTTA
1 TACACGTAGTAGCCTGCACTTAGTACTACACACATGACCT--AACTATCTGG
* * *
61049324 AACACATAGTAGCCTGCACATAGTACTACACA
1 TACACGTAGTAGCCTGCACTTAGTACTACACA
61049356 TGTGTTCTCA
Statistics
Matches: 147, Mismatches: 29, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
49 7 0.05
50 68 0.46
51 30 0.20
52 42 0.29
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACTATCTGG
Found at i:61053808 original size:26 final size:26
Alignment explanation
Indices: 61053744--61053812 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
61053734 CATTCTGACC
* *
61053744 CACAACTGGTGTAAGTAGGCCCATTT
1 CACAACTTGTGTAAGCAGGCCCATTT
61053770 CACAACTTGTGTAAGCAGGCCCATTT
1 CACAACTTGTGTAAGCAGGCCCATTT
*
61053796 CACAGCTCT-TGTAAGCA
1 CACAACT-TGTGTAAGCA
61053813 ATGATGTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
26 38 0.97
27 1 0.03
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
CACAACTTGTGTAAGCAGGCCCATTT
Found at i:61060219 original size:23 final size:23
Alignment explanation
Indices: 61060167--61060213 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
61060157 GAGGGAAAGT
*
61060167 AAAAAAATTGAAGAGAAAAGGTA
1 AAAAAAATTGAAGAGAAAAGGGA
61060190 AAAAAAATTGAAGA-AAAAGGGA
1 AAAAAAATTGAAGAGAAAAGGGA
61060212 AA
1 AA
61060214 GCAAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.68, C:0.00, G:0.21, T:0.11
Consensus pattern (23 bp):
AAAAAAATTGAAGAGAAAAGGGA
Found at i:61060711 original size:40 final size:40
Alignment explanation
Indices: 61060667--61060801 Score: 227
Period size: 40 Copynumber: 3.4 Consensus size: 40
61060657 TTATGAATCC
61060667 ATGAAAAGGTTGAAAAGGATGTATCCGAAAAGGATATCAA
1 ATGAAAAGGTTGAAAAGGATGTATCCGAAAAGGATATCAA
61060707 ATGAAAAGGTTGAAAAGGATGTATCCGAAAAGGATATCAA
1 ATGAAAAGGTTGAAAAGGATGTATCCGAAAAGGATATCAA
* * *
61060747 ATGAAAAGGTTGAAAAAGATGTATCTGAAAAGGATAT-TA
1 ATGAAAAGGTTGAAAAGGATGTATCCGAAAAGGATATCAA
*
61060786 ATGAAAAGGTCGAAAA
1 ATGAAAAGGTTGAAAA
61060802 AATATCAATG
Statistics
Matches: 91, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 16 0.18
40 75 0.82
ACGTcount: A:0.49, C:0.06, G:0.24, T:0.21
Consensus pattern (40 bp):
ATGAAAAGGTTGAAAAGGATGTATCCGAAAAGGATATCAA
Found at i:61060800 original size:24 final size:24
Alignment explanation
Indices: 61060773--61060842 Score: 99
Period size: 23 Copynumber: 3.0 Consensus size: 24
61060763 AGATGTATCT
61060773 GAAAAGGATATTAATGAAAAGGTC
1 GAAAAGGATATTAATGAAAAGGTC
* * *
61060797 GAAAA-AATATCAATGACAAGGTC
1 GAAAAGGATATTAATGAAAAGGTC
61060820 GAAAAGGATATTAATG-AAAGGTC
1 GAAAAGGATATTAATGAAAAGGTC
61060843 CGTATCTCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
23 26 0.67
24 13 0.33
ACGTcount: A:0.50, C:0.07, G:0.23, T:0.20
Consensus pattern (24 bp):
GAAAAGGATATTAATGAAAAGGTC
Found at i:61076765 original size:22 final size:22
Alignment explanation
Indices: 61076723--61076766 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
61076713 ATGTTAAAAT
* *
61076723 TTTTAAAATTTTATTTCAATTA
1 TTTTAAAAATTTAATTCAATTA
61076745 TTTTAAATAATTTAATT-AATTA
1 TTTTAAA-AATTTAATTCAATTA
61076767 AATTTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTTAAAAATTTAATTCAATTA
Found at i:61076792 original size:26 final size:25
Alignment explanation
Indices: 61076744--61076812 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
61076734 TATTTCAATT
* * *
61076744 ATTTTAAATAATTTAATTA-ATTAA
1 ATTTTAAAAAATATATTTAGATTAA
61076768 ATTTTATAAAAATATATTTAGATTAA
1 ATTTTA-AAAAATATATTTAGATTAA
* *
61076794 ATTTTAAAAATTTTATTTA
1 ATTTTAAAAAATATATTTA
61076813 TAGCAAAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
24 6 0.16
25 21 0.55
26 11 0.29
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (25 bp):
ATTTTAAAAAATATATTTAGATTAA
Found at i:61079183 original size:34 final size:34
Alignment explanation
Indices: 61079140--61079209 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
61079130 AGAAATACCA
61079140 CATAGTACTTGATATATTGGAGAATCCTTCTCAT
1 CATAGTACTTGATATATTGGAGAATCCTTCTCAT
61079174 CATAGTACTTGATATATTGGAGAATCCTTCTCAT
1 CATAGTACTTGATATATTGGAGAATCCTTCTCAT
61079208 CA
1 CA
61079210 AGGGTAAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (34 bp):
CATAGTACTTGATATATTGGAGAATCCTTCTCAT
Found at i:61085161 original size:40 final size:40
Alignment explanation
Indices: 61085065--61085255 Score: 238
Period size: 40 Copynumber: 4.8 Consensus size: 40
61085055 CGAATGGTGT
* * * * * *
61085065 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
61085106 CCGGGTCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
61085146 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
61085186 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * *
61085226 CCGGGCTAATTCCCGAATGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
61085256 ATCACTATAA
Statistics
Matches: 132, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 108 0.82
41 24 0.18
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:61085268 original size:80 final size:79
Alignment explanation
Indices: 61085064--61085283 Score: 253
Period size: 80 Copynumber: 2.7 Consensus size: 79
61085054 TCGAATGGTG
* * * *
61085064 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TCACTAAA-CCGGGTCAAGTCCCGAAGGCATT
*
61085129 TGTGCGAGTTACCAAA
64 CGTGCGAGTTACCAAA
* * * * * *
61085145 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCA-CTAAACCGGGTCAAGTCCCGAAGGCATTC
*
61085210 GTGCGAGTTACTAAA
65 GTGCGAGTTACCAAA
* * *
61085225 TCCGGGCTAATTCCCGAATGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTA-AACCGGGTCAA-GTCCCGAAG
61085284 ACAATCGAGT
Statistics
Matches: 116, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 4 0.03
80 81 0.70
81 31 0.27
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTAAACCGGGTCAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAA
Found at i:61085270 original size:40 final size:40
Alignment explanation
Indices: 61085065--61085288 Score: 211
Period size: 40 Copynumber: 5.6 Consensus size: 40
61085055 CGAATGGTGT
** * * * *
61085065 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACCAAAA
* *
61085106 CCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCAATTGTGCGAGTTACCAAAA
* *
61085146 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCAAAA
* * *
61085186 CCGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACCAAAA
* * * * * *
61085226 CCGGGCTAATTCCCGAATGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCAAAA
*
61085266 CCGGGC-AATGTCCCGAAGACAAT
1 CCGGGCTAA-GTCCCGAAGGCAAT
61085289 CGAGTGAGTC
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 4 0.03
40 126 0.80
41 28 0.18
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCAAAA
Found at i:61085279 original size:120 final size:121
Alignment explanation
Indices: 61085065--61085283 Score: 282
Period size: 120 Copynumber: 1.8 Consensus size: 121
61085055 CGAATGGTGT
* * *
61085065 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* * *
61085130 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * *
61085186 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAATGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAAT
* *
61085249 TGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAAG
61085284 ACAATCGAGT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
119 3 0.04
120 55 0.66
121 25 0.30
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:61091240 original size:17 final size:17
Alignment explanation
Indices: 61091185--61091240 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
61091175 TAAATTTAAA
61091185 ATATAATATATAATAAAA-
1 ATATAAT-TAT-ATAAAAT
61091203 ATAT-ATT-TATAAGAAT
1 ATATAATTATATAA-AAT
61091219 A-ATAATTATATAAAAT
1 ATATAATTATATAAAAT
61091235 ATATAA
1 ATATAA
61091241 AATATATTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
14 4 0.12
15 5 0.15
16 9 0.27
17 11 0.33
18 4 0.12
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
ATATAATTATATAAAAT
Found at i:61091263 original size:43 final size:41
Alignment explanation
Indices: 61091185--61091264 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 41
61091175 TAAATTTAAA
* * *
61091185 ATATAATATATAATAAAAATATATTTATAAGAATAATAATT
1 ATATAAAATATAATAAAAATATATTTAGAAAAATAATAATT
61091226 ATATAAAATAT-ATAAAATATATTAGTTTAGAAAAATAAT
1 ATATAAAATATAATAAAA-ATA-TA-TTTAGAAAAATAAT
61091265 GTATAAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 6 0.18
41 13 0.39
42 2 0.06
43 12 0.36
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.38
Consensus pattern (41 bp):
ATATAAAATATAATAAAAATATATTTAGAAAAATAATAATT
Found at i:61091758 original size:18 final size:17
Alignment explanation
Indices: 61091722--61091854 Score: 185
Period size: 18 Copynumber: 7.5 Consensus size: 17
61091712 AATCATATCT
61091722 TCTAAGATTGTATATCATA
1 TCTAAGATTG-A-ATCATA
61091741 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
*
61091759 TCTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
61091776 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
*
61091794 TCTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
61091811 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
* *
61091829 TTTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
61091846 TCTAAGATT
1 TCTAAGATT
61091855 ACATATCATT
Statistics
Matches: 104, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
17 46 0.44
18 47 0.45
19 11 0.11
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (17 bp):
TCTAAGATTGAATCATA
Found at i:61091780 original size:35 final size:35
Alignment explanation
Indices: 61091722--61091863 Score: 239
Period size: 35 Copynumber: 4.0 Consensus size: 35
61091712 AATCATATCT
61091722 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
61091759 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
61091794 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
61091829 TTTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
61091864 TGAAGATTAT
Statistics
Matches: 102, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
35 87 0.85
36 5 0.05
37 10 0.10
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:61091825 original size:70 final size:72
Alignment explanation
Indices: 61091699--61091863 Score: 244
Period size: 70 Copynumber: 2.2 Consensus size: 72
61091689 AAATTAAATC
*
61091699 TCTAAGATTACAAAATCATATCTTCTAAGATTGTATATCATATCTAAGATTGCAATCATATCTAA
1 TCTAAGATTAC-ATATCATA---TCTAAGATTG-ATATCATATCTAAGATTGCAATCATATCTAA
61091764 GATTGTATCATA
61 GATTGTATCATA
* *
61091776 TCTAAGATTGCA-ATCATATCTAAGATTG-TATCATATCTAAGATTGCAATCATATTTAAGATTG
1 TCTAAGATTACATATCATATCTAAGATTGATATCATATCTAAGATTGCAATCATATCTAAGATTG
61091839 TATCATA
66 TATCATA
61091846 TCTAAGATTACATATCAT
1 TCTAAGATTACATATCAT
61091864 TGAAGATTAT
Statistics
Matches: 84, Mismatches: 3, Indels: 8
0.88 0.03 0.08
Matches are distributed among these distances:
70 52 0.62
71 5 0.06
72 10 0.12
75 6 0.07
76 1 0.01
77 10 0.12
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (72 bp):
TCTAAGATTACATATCATATCTAAGATTGATATCATATCTAAGATTGCAATCATATCTAAGATTG
TATCATA
Found at i:61092141 original size:45 final size:45
Alignment explanation
Indices: 61092090--61092189 Score: 123
Period size: 46 Copynumber: 2.2 Consensus size: 45
61092080 ATGTCGACAC
* *
61092090 CATGTCCTAGACATGGTATTACATTGAC-ACATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTATTACACTGACTACATCTCG-AGGCCGATG
* *
61092135 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTATTACACTGAC-TACATCTCGAGGCCGATG
61092181 CATGTCCCA
1 CATGTCCCA
61092190 TGAACTATTC
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
44 10 0.21
45 14 0.29
46 24 0.50
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGTATTACACTGACTACATCTCGAGGCCGATG
Found at i:61092446 original size:47 final size:44
Alignment explanation
Indices: 61092344--61092470 Score: 148
Period size: 47 Copynumber: 2.8 Consensus size: 44
61092334 TCTCGAGGCT
*
61092344 GATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTTAATGAC
1 GATGCATGTCCCAGACATGTCTTACACTAG--CTCGTCATAATGAC
* * *
61092390 GTTGCCATGTCCCGGACATGGTCTTACACTAGCTC-TCATAATGTGGTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCGTCATAA--T-GAC
61092438 GATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTC
61092471 ACGCAAGTGA
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
45 5 0.07
46 21 0.30
47 27 0.39
48 17 0.24
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCGTCATAATGAC
Found at i:61092469 original size:46 final size:46
Alignment explanation
Indices: 61092296--61092470 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
61092286 TCATCTAGAC
* * * *
61092296 CGATGCCATGTCCCAGACATGTCTTATACTGGCT-TACAT-CTCGAGG
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTCT-CATAAT-GTGG
* *
61092342 CTGATG-CATGTCCCAGACATGTCTTACACTAGCACTCGTCTTAA--TGA
1 C-GATGCCATGTCCCAGACATGTCTTACACTAG--CTC-TCATAATGTGG
* *
61092389 CGTTGCCATGTCCCGGACATGGTCTTACACTAGCTCTCATAATGTGG
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGG
61092436 TCGATG-CATGTCCCAGACATGTCTTACACTAGCTC
1 -CGATGCCATGTCCCAGACATGTCTTACACTAGCTC
61092471 ACGCAAGTGA
Statistics
Matches: 106, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
45 5 0.05
46 46 0.43
47 34 0.32
48 18 0.17
49 2 0.02
50 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGG
Found at i:61098548 original size:50 final size:49
Alignment explanation
Indices: 61098393--61098691 Score: 261
Period size: 49 Copynumber: 6.3 Consensus size: 49
61098383 TGTCCTGGAT
61098393 ATGGTCTTACACT-GCCTATCATCATCGAGGCCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTAG-CTATCATCATCGAGGCCGATGCCATGTCCCAGAC
*
61098442 ATGGTCTTATACTAGCTATCATCATCGAGGCCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCCAGAC
* * *
61098491 ATGGTCTTACACTAGCTCTCGCAT-ATTCG-TGCGGATGCCATGTCCCAGAC
1 ATGGTCTTACACTAGCTAT--CATCA-TCGAGGCCGATGCCATGTCCCAGAC
* * * * *
61098541 ATGGTCTTACA-TTGAC-A-CATC-TCGTA-GCCAAT-ACATGTTCTAGAC
1 ATGGTCTTACACTAG-CTATCATCATCG-AGGCCGATGCCATGTCCCAGAC
* * * *
61098586 AT-GTCTTACACT-GGTTTACGTC-TCGAGGTCGATG-CATGTCCCAGAC
1 ATGGTCTTACACTAGCTAT-CATCATCGAGGCCGATGCCATGTCCCAGAC
* * * *
61098632 AT-GTCTTACACTAGC-ACTCGTC-TCAATGTCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTAGCTA-TCATCATCGAGGCCGATGCCATGTCCCAGAC
61098679 ATGGTCTTACACT
1 ATGGTCTTACACT
61098692 GGCTCACACC
Statistics
Matches: 209, Mismatches: 23, Indels: 37
0.78 0.09 0.14
Matches are distributed among these distances:
44 9 0.04
45 17 0.08
46 53 0.25
47 16 0.08
48 10 0.05
49 65 0.31
50 33 0.16
51 6 0.03
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
ATGGTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCCAGAC
Found at i:61098705 original size:46 final size:46
Alignment explanation
Indices: 61098424--61098705 Score: 159
Period size: 46 Copynumber: 6.0 Consensus size: 46
61098414 TCATCGAGGC
* * * *
61098424 CGATGCCATGTCCCAGACATGGTCTTATACTAGCT-ATCATCATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA-C-TC--CAATGT
61098473 CGATGCCATGTCCCAGACATGGTCTTACACTAGCT--CTCGCATATTCGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACTC-CA-A-T-GT
* * ** *
61098521 GCGGATGCCATGTCCCAGACATGGTCTTACA-TTGACACATCTCGTA-GC
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCA-CTCCAATGT
* * * * * * * * *
61098569 CAAT-ACATGTTCTAGACAT-GTCTTACACTGGTTTACGTCTCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAC-TC-CAATGT
* *
61098615 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAC-TC-CAATGT
* *
61098661 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACACCAATG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACTCCAATG
61098706 ACTCAAATGT
Statistics
Matches: 182, Mismatches: 35, Indels: 35
0.72 0.14 0.14
Matches are distributed among these distances:
43 1 0.01
44 11 0.06
45 16 0.09
46 51 0.28
47 17 0.09
48 16 0.09
49 37 0.20
50 29 0.16
51 1 0.01
53 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACTCCAATGT
Found at i:61103852 original size:30 final size:30
Alignment explanation
Indices: 61103817--61103876 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
61103807 CTTAATCAAC
*
61103817 TCTTCTGCTTTACAGGCTCTTTCAGCAAGT
1 TCTTCTGCTTTACAGGCTCTTTCAACAAGT
61103847 TCTTCTGCTTTACAGGCTCTTTCAACAAGT
1 TCTTCTGCTTTACAGGCTCTTTCAACAAGT
61103877 GCTACAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.18, C:0.27, G:0.15, T:0.40
Consensus pattern (30 bp):
TCTTCTGCTTTACAGGCTCTTTCAACAAGT
Found at i:61106326 original size:42 final size:47
Alignment explanation
Indices: 61106221--61106377 Score: 148
Period size: 48 Copynumber: 3.4 Consensus size: 47
61106211 GGTTATGTAC
* * *
61106221 GATCCCATGTAAGACCAT-GTCTGGGACATGGCTTTGGCATCAATATGT
1 GATCCCATGTAAGACCATAGCCTGGGACAT-G-ATTGGCATCGATATGT
* ** * *
61106269 AATTTCGTGCAAGACCATAG-CT-GG-C-T-ATTGGCATCGATATGT
1 GATCCCATGTAAGACCATAGCCTGGGACATGATTGGCATCGATATGT
*
61106311 GATCCCATGTCAGACCAT-GCCTGGGACATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATAGCCTGGGACAT-G-ATTGGCATCGATATGT
61106359 GATCCCATGTAAGACCATA
1 GATCCCATGTAAGACCATA
61106378 TCTAGGATAT
Statistics
Matches: 86, Mismatches: 14, Indels: 17
0.74 0.12 0.15
Matches are distributed among these distances:
41 1 0.01
42 28 0.33
43 2 0.02
44 1 0.01
45 2 0.02
46 1 0.01
47 2 0.02
48 48 0.56
49 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (47 bp):
GATCCCATGTAAGACCATAGCCTGGGACATGATTGGCATCGATATGT
Found at i:61106366 original size:48 final size:48
Alignment explanation
Indices: 61106290--61106398 Score: 164
Period size: 48 Copynumber: 2.2 Consensus size: 48
61106280 AGACCATAGC
* * *
61106290 TGGCTATTGGCATCGATATGTGATCCCATGTCAGACCATGCCTGGGACA
1 TGGC-ATTGGCATCGATATGTGATCCCATGTAAGACCATACCTAGGACA
* *
61106339 TGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATCTAGGATA
1 TGGCATTGGCATCGATATGTGATCCCATGTAAGACCATACCTAGGACA
61106387 TGGCATTGGCAT
1 TGGCATTGGCAT
61106399 ACTACCATGT
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
48 51 0.93
49 4 0.07
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (48 bp):
TGGCATTGGCATCGATATGTGATCCCATGTAAGACCATACCTAGGACA
Found at i:61106391 original size:90 final size:90
Alignment explanation
Indices: 61106221--61106392 Score: 229
Period size: 90 Copynumber: 1.9 Consensus size: 90
61106211 GGTTATGTAC
* * ** *
61106221 GATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCAATATGTAATTTCGTGCAAGACCA
1 GATCCCATGTAAGACCATGCCTGGGACATGGCATTGGCATCAATATGTAATCCCATGCAAGACCA
*
61106286 TAGCTGGCTATTGGCATCGATATGT
66 TAGCTGGATATTGGCATCGATATGT
* * * *
61106311 GATCCCATGTCAGACCATGCCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCA
1 GATCCCATGTAAGACCATGCCTGGGACATGGCATTGGCATCAATATGTAATCCCATGCAAGACCA
*
61106376 TATCTAGGATA-TGGCAT
66 TAGCT-GGATATTGGCAT
61106393 TGGCATACTA
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
90 66 0.94
91 4 0.06
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (90 bp):
GATCCCATGTAAGACCATGCCTGGGACATGGCATTGGCATCAATATGTAATCCCATGCAAGACCA
TAGCTGGATATTGGCATCGATATGT
Found at i:61112658 original size:41 final size:41
Alignment explanation
Indices: 61112566--61112815 Score: 342
Period size: 41 Copynumber: 6.1 Consensus size: 41
61112556 GCAAAAATTG
* * *
61112566 AAAAACACAGAGCAATAGCGGCG-TTTTGCCAAAAATGCCGCT
1 AAAAAC-CAGAGCATTAGCGGCGCTTTTG-GAAAAACGCCGCT
* * *
61112608 AAAAA-CAGAGCAATAGCGACGCTTTTGGCAAAACGCCGCT
1 AAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCT
* *
61112648 AAAAACCAGAGCATTAGCTGCGCTTTTGGGAAAACGCCGCT
1 AAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCT
* *
61112689 AAGAACCAGAGCATTAGCGACGCTTTTGGAAAAACGCCGCT
1 AAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCT
* * *
61112730 AAGAACAAGAGCATTAGCGGCGCTTTTTGAAAAACGCCGCT
1 AAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCT
*
61112771 AAAAACCAGAGCATTAGCGGCGCTTTTTGAAAAACGCCGCT
1 AAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCT
61112812 AAAA
1 AAAA
61112816 GTCATAAAAC
Statistics
Matches: 189, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
40 30 0.16
41 154 0.81
42 5 0.03
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.18
Consensus pattern (41 bp):
AAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCT
Found at i:61112980 original size:25 final size:25
Alignment explanation
Indices: 61112946--61112993 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
61112936 AGATAGTATC
61112946 GAATTTAAAATATAGAATTAATTTT
1 GAATTTAAAATATAGAATTAATTTT
*
61112971 GAATTTAAAATATCGAATTAATT
1 GAATTTAAAATATAGAATTAATT
61112994 ATCATTATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (25 bp):
GAATTTAAAATATAGAATTAATTTT
Found at i:61113020 original size:14 final size:14
Alignment explanation
Indices: 61112998--61113095 Score: 61
Period size: 14 Copynumber: 6.7 Consensus size: 14
61112988 TTAATTATCA
*
61112998 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
61113012 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
61113026 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
* *
61113040 TTAAGGTTTATGAGT
1 TTATGGTTTAAG-GT
*
61113055 TAACTATGGTTTAAGAT
1 T---TATGGTTTAAGGT
* * *
61113072 ATATAGTTTAGGGT
1 TTATGGTTTAAGGT
*
61113086 TTAAGGTTTA
1 TTATGGTTTA
61113096 GGAGTTAACT
Statistics
Matches: 62, Mismatches: 18, Indels: 8
0.70 0.20 0.09
Matches are distributed among these distances:
14 49 0.79
15 3 0.05
17 1 0.02
18 9 0.15
ACGTcount: A:0.29, C:0.01, G:0.24, T:0.46
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:61113033 original size:21 final size:21
Alignment explanation
Indices: 61113009--61113090 Score: 83
Period size: 21 Copynumber: 3.7 Consensus size: 21
61112999 TATAGTTTAA
*
61113009 GGTTTATGGTTTAAGATATAT
1 GGTTTAGGGTTTAAGATATAT
* *
61113030 GGTTTAGGGTTTAAGGTTTAT
1 GGTTTAGGGTTTAAGATATAT
*
61113051 GAGTTAACTATGGTTTAAGATATAT
1 G-GTT---TAGGGTTTAAGATATAT
*
61113076 AGTTTAGGGTTTAAG
1 GGTTTAGGGTTTAAG
61113091 GTTTAGGAGT
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
21 29 0.59
22 3 0.06
24 3 0.06
25 14 0.29
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.44
Consensus pattern (21 bp):
GGTTTAGGGTTTAAGATATAT
Found at i:61113063 original size:46 final size:46
Alignment explanation
Indices: 61113013--61113106 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
61113003 GTTTAAGGTT
* *
61113013 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAAC
61113059 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAAC
61113105 TA
1 TA
61113107 GTATTTGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.30, C:0.02, G:0.26, T:0.43
Consensus pattern (46 bp):
TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAAC
Found at i:61113195 original size:15 final size:15
Alignment explanation
Indices: 61113155--61113232 Score: 65
Period size: 14 Copynumber: 5.3 Consensus size: 15
61113145 TAGGGTTGGA
61113155 GTTTAA-GGTGTAAGG
1 GTTTAAGGGT-TAAGG
*
61113170 GTTT-GGGGTTAAGG
1 GTTTAAGGGTTAAGG
*
61113184 GTTTAAGGGTT-AGT
1 GTTTAAGGGTTAAGG
* *
61113198 GTTTATGGGATAAGG
1 GTTTAAGGGTTAAGG
*
61113213 G-TTAAGAGGTTTAGG
1 GTTTAAG-GGTTAAGG
61113228 GTTTA
1 GTTTA
61113233 GATTAATTAG
Statistics
Matches: 49, Mismatches: 9, Indels: 9
0.73 0.13 0.13
Matches are distributed among these distances:
14 24 0.49
15 22 0.45
16 3 0.06
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.37
Consensus pattern (15 bp):
GTTTAAGGGTTAAGG
Found at i:61113231 original size:7 final size:7
Alignment explanation
Indices: 61113135--61113233 Score: 51
Period size: 7 Copynumber: 13.9 Consensus size: 7
61113125 TGAATTATGA
61113135 GTTTAGG
1 GTTTAGG
*
61113142 GGTTAGG
1 GTTTAGG
61113149 G-TT-GG
1 GTTTAGG
*
61113154 AGTTTAAG
1 -GTTTAGG
*
61113162 GTGTAAGG
1 GT-TTAGG
*
61113170 GTTTGGG
1 GTTTAGG
*
61113177 GTTAAGG
1 GTTTAGG
61113184 GTTTAAGG
1 GTTT-AGG
*
61113192 G-TTAGT
1 GTTTAGG
61113198 GTTTATGG
1 GTTTA-GG
* *
61113206 GATAAGG
1 GTTTAGG
*
61113213 GTTAAGAG
1 GTTTAG-G
61113221 GTTTAGG
1 GTTTAGG
61113228 GTTTAG
1 GTTTAG
61113234 ATTAATTAGT
Statistics
Matches: 69, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
5 2 0.03
6 6 0.09
7 41 0.59
8 20 0.29
ACGTcount: A:0.21, C:0.00, G:0.42, T:0.36
Consensus pattern (7 bp):
GTTTAGG
Found at i:61117948 original size:22 final size:23
Alignment explanation
Indices: 61117906--61117948 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
61117896 TTTCAAAAAT
*
61117906 TAAACATAATATAATATTTAACA
1 TAAAAATAATATAATATTTAACA
*
61117929 TAAAAATAA-ATATTATTTAA
1 TAAAAATAATATAATATTTAA
61117949 TTAAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAAAATAATATAATATTTAACA
Found at i:61118037 original size:43 final size:43
Alignment explanation
Indices: 61118000--61118213 Score: 311
Period size: 43 Copynumber: 5.0 Consensus size: 43
61117990 GCGTTTGTGA
*
61118000 GAAAAGCGCCGCTAAAGGTCATTGTCTTTAGCGGCGTTTTTTG
1 GAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTTG
* *
61118043 GAAAAGCGCCGCCAAAGGTCTTGGTCTTTAGCGGCGTTTTTTG
1 GAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTTG
*
61118086 GAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCGTTTTTTG
1 GAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTTG
* * * * **
61118129 GTAAAGTGCCGCTAAAGGTCATGGTTTTTAGCGGCGTTTGTAA
1 GAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTTG
* * *
61118172 AAAAAGCGCCGCTAAAAGTCATAGTCTTTAGCGGCGTTTTTT
1 GAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTT
61118214 TAAATAAACG
Statistics
Matches: 150, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 150 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (43 bp):
GAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTTG
Found at i:61122237 original size:40 final size:40
Alignment explanation
Indices: 61122163--61122316 Score: 157
Period size: 40 Copynumber: 3.9 Consensus size: 40
61122153 CCGCACCAAG
* * * * * *
61122163 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
61122203 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
** * *
61122243 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * *
61122283 GTCC-TCGGGACTTAGCCCGGATATCACAATTTGC
1 G-CCTTCGGGTCTTAGCCCGGATATAACAACTTGC
61122317 TCATGCACAC
Statistics
Matches: 93, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 91 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:61131448 original size:40 final size:40
Alignment explanation
Indices: 61131374--61131527 Score: 157
Period size: 40 Copynumber: 3.9 Consensus size: 40
61131364 CCGCACCAAG
* * * * * *
61131374 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
61131414 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
** * *
61131454 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * *
61131494 GTCC-TCGGGACTTAGCCCGGATATCACAATTTGC
1 G-CCTTCGGGTCTTAGCCCGGATATAACAACTTGC
61131528 TCATGCACAC
Statistics
Matches: 93, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 91 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:61137933 original size:40 final size:40
Alignment explanation
Indices: 61137859--61138012 Score: 157
Period size: 40 Copynumber: 3.9 Consensus size: 40
61137849 CCGCACCAAG
* * * * * *
61137859 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
61137899 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
** * *
61137939 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * *
61137979 GTCC-TCGGGACTTAGCCCGGATATCACAATTTGC
1 G-CCTTCGGGTCTTAGCCCGGATATAACAACTTGC
61138013 TCATGCACAC
Statistics
Matches: 93, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 91 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:61143412 original size:2 final size:2
Alignment explanation
Indices: 61143405--61143459 Score: 92
Period size: 2 Copynumber: 27.5 Consensus size: 2
61143395 AAAACCCTTT
*
61143405 AC AC AC AC AC AC AC AC AC AG AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
*
61143447 AT AC AC AC AC AC A
1 AC AC AC AC AC AC A
61143460 TATATATATA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.45, G:0.02, T:0.02
Consensus pattern (2 bp):
AC
Found at i:61166918 original size:20 final size:20
Alignment explanation
Indices: 61166895--61166992 Score: 85
Period size: 20 Copynumber: 4.9 Consensus size: 20
61166885 CAGAGTACAT
61166895 AAGTGCAATCAGGGGTACTG
1 AAGTGCAATCAGGGGTACTG
* *
61166915 AAGTACAATCAGGGGCAC-G
1 AAGTGCAATCAGGGGTACTG
*
61166934 AAAGTGCAATCATGGGTA-TCG
1 -AAGTGCAATCAGGGGTACT-G
* * *
61166955 AAGTACAAACAGGGGCACAT-
1 AAGTGCAATCAGGGGTAC-TG
*
61166975 AAGTGCAATTAGGGGTAC
1 AAGTGCAATCAGGGGTAC
61166993 CGGAGTAAAA
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
19 1 0.02
20 57 0.95
21 1 0.02
22 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.31, T:0.17
Consensus pattern (20 bp):
AAGTGCAATCAGGGGTACTG
Found at i:61166939 original size:40 final size:40
Alignment explanation
Indices: 61166895--61167024 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
61166885 CAGAGTACAT
61166895 AAGTGCAATCAGGGGTACTGAAGTACAATCAGGGGCACGA
1 AAGTGCAATCAGGGGTACTGAAGTACAATCAGGGGCACGA
* *
61166935 AAGTGCAATCATGGGTA-TCGAAGTACAAACAGGGGCAC-A
1 AAGTGCAATCAGGGGTACT-GAAGTACAATCAGGGGCACGA
* * * * *
61166974 TAAGTGCAATTAGGGGTACCGGAGTAAAAT-AGGGGCACGT
1 -AAGTGCAATCAGGGGTACTGAAGTACAATCAGGGGCACGA
61167014 AAGTGCAATCA
1 AAGTGCAATCA
61167025 TTCAATAATT
Statistics
Matches: 76, Mismatches: 10, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
39 20 0.26
40 56 0.74
ACGTcount: A:0.36, C:0.16, G:0.31, T:0.17
Consensus pattern (40 bp):
AAGTGCAATCAGGGGTACTGAAGTACAATCAGGGGCACGA
Found at i:61171524 original size:36 final size:36
Alignment explanation
Indices: 61171484--61171556 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
61171474 TGGGTCACAT
*
61171484 TCGTAAATGGATGTATTTTCTCACTTAGTATAGAAA
1 TCGTAAATGAATGTATTTTCTCACTTAGTATAGAAA
61171520 TCGTAAATGAATGTATTTTCTCACTTAGTATAGAAA
1 TCGTAAATGAATGTATTTTCTCACTTAGTATAGAAA
61171556 T
1 T
61171557 GACTTGAGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (36 bp):
TCGTAAATGAATGTATTTTCTCACTTAGTATAGAAA
Found at i:61178280 original size:22 final size:22
Alignment explanation
Indices: 61178255--61178297 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
61178245 AATTTATTTT
61178255 TATTTTATTATATGGTTTGTAA
1 TATTTTATTATATGGTTTGTAA
61178277 TATTTTATTATATGGTTTGTA
1 TATTTTATTATATGGTTTGTA
61178298 TTACGAGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.14, T:0.60
Consensus pattern (22 bp):
TATTTTATTATATGGTTTGTAA
Found at i:61184140 original size:42 final size:42
Alignment explanation
Indices: 61184027--61184140 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 42
61184017 CTGAGACATC
* *
61184027 GTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTAT
1 GTGTAAGACCATGTCTGGGACACAGGCATCGATT-AGATTTAT
*
61184070 GTATAAGACCATGTCTGGGACATC-GGCATCGTATCT-GATTT-T
1 GTGTAAGACCATGTCTGGGACA-CAGGCATCG-AT-TAGATTTAT
* * *
61184112 GTGTAAGACCTTGTTTGGGACAGAGGCAT
1 GTGTAAGACCATGTCTGGGACACAGGCAT
61184141 TGATATTGAA
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
42 25 0.42
43 31 0.52
44 3 0.05
45 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACACAGGCATCGATTAGATTTAT
Found at i:61190663 original size:39 final size:39
Alignment explanation
Indices: 61190599--61190793 Score: 210
Period size: 39 Copynumber: 4.9 Consensus size: 39
61190589 CACCAACATA
* * * * * *
61190599 AAGCCTACGAGACTTTCAGCCCGGATATAGTACCAGTACG
1 AAGCCTACG-GACCTTAAGTCCGGATATAATTCCAGCACG
* * *
61190639 AAACCTACGGACCTTAAGTCCGGATATAGTGCCAGCACG
1 AAGCCTACGGACCTTAAGTCCGGATATAATTCCAGCACG
* * *
61190678 AAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTACGGACCTTAAGTCCGGATATAATTCCAGCACG
* *
61190717 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTACGGACCTTAAGTCCGGATATAATTCCAGCACG
* * * *
61190756 AAGCCTACGGGTCTTTAAGCCCGGATATAATTTCAGCA
1 AAGCCTAC-GGACCTTAAGTCCGGATATAATTCCAGCA
61190794 TATAGCCTGC
Statistics
Matches: 135, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
39 103 0.76
40 32 0.24
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.21
Consensus pattern (39 bp):
AAGCCTACGGACCTTAAGTCCGGATATAATTCCAGCACG
Found at i:61190752 original size:78 final size:79
Alignment explanation
Indices: 61190599--61190824 Score: 233
Period size: 78 Copynumber: 2.9 Consensus size: 79
61190589 CACCAACATA
* * * * * * *
61190599 AAGCCTACGAGA-CTTTCAGCCCGGATATAGTACCAGTACGAAACCTACGGACCTTAAGTCCGGA
1 AAGCCTACG-GATCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
* *
61190663 TATAGTGCCAGCACG
65 TACAATGCCAGCACG
* *
61190678 AAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
1 AAGCCTACGGATCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
*
61190742 ACAATTCCAGCACG
66 ACAATGCCAGCACG
* * * * * * *
61190756 AAGCCTACGGGTCTTTAAGCCCGGATATAATTTCAGCA-TATAGCCTGCGAGTCTTTAAGCCCGG
1 AAGCCTACGGATCTTTAAGCCCGGATACAATTCCAGCACGA-AGCCTGCG-GACCTTAAGTCCGG
61190820 ATACA
64 ATACA
61190825 CATCAAATAT
Statistics
Matches: 122, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
78 68 0.56
79 38 0.31
80 16 0.13
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (79 bp):
AAGCCTACGGATCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
ACAATGCCAGCACG
Found at i:61190793 original size:40 final size:40
Alignment explanation
Indices: 61190599--61190822 Score: 188
Period size: 39 Copynumber: 5.7 Consensus size: 40
61190589 CACCAACATA
* * * * *
61190599 AAGCCTACGAGACTTTCAGCCCGGATATAGTACCAGTACG
1 AAGCCTACGGGACTTTAAGCCCGGATATAATTCCAGCACG
* * * * *
61190639 AAACCTAC-GGACCTTAAGTCCGGATATAGTGCCAGCACG
1 AAGCCTACGGGACTTTAAGCCCGGATATAATTCCAGCACG
* * *
61190678 AAGCCTGC-GGA-TCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTACGGGACT-TTAAGCCCGGATATAATTCCAGCACG
* * * *
61190717 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTACGGGACTTTAAGCCCGGATATAATTCCAGCACG
* * *
61190756 AAGCCTACGGGTCTTTAAGCCCGGATATAATTTCAGCA-T
1 AAGCCTACGGGACTTTAAGCCCGGATATAATTCCAGCACG
* * *
61190795 ATAGCCTGCGAGTCTTTAAGCCCGGATA
1 A-AGCCTACGGGACTTTAAGCCCGGATA
61190823 CACATCAAAT
Statistics
Matches: 157, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 102 0.65
40 55 0.35
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (40 bp):
AAGCCTACGGGACTTTAAGCCCGGATATAATTCCAGCACG
Found at i:61195641 original size:85 final size:84
Alignment explanation
Indices: 61195511--61195665 Score: 222
Period size: 85 Copynumber: 1.8 Consensus size: 84
61195501 TACCATACCA
* * * *
61195511 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCCCAGCTATAGTC
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATAGATGCC-ATAGCCCAGATATAGTC
61195576 TTACACGAAATCTCATATCG
65 TTACACGAAATCTCATATCG
* * *
61195596 ATGCCATATCCTAGATATGGTCTTACACG-AAGTCTCATATAGATGCCATATCCCAGATATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGTAA-TCTCATATAGATGCCATAGCCCAGATATAGTC
61195660 TTACAC
65 TTACAC
61195666 ATAGTCTTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
84 22 0.35
85 40 0.65
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATAGATGCCATAGCCCAGATATAGTCT
TACACGAAATCTCATATCG
Done.