Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 22 of 427
Found at i:6016412 original size:12 final size:11
Alignment explanation
Indices: 6016369--6016412 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 11
6016359 ATAAAAATAA
6016369 AAATTAAAATT
1 AAATTAAAATT
*
6016380 AAAATTAATATT
1 -AAATTAAAATT
*
6016392 AAATAAAAATT
1 AAATTAAAATT
6016403 AAATTGAAAA
1 AAATT-AAAA
6016413 CAACTCTCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 13 0.48
12 14 0.52
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (11 bp):
AAATTAAAATT
Found at i:6018568 original size:147 final size:147
Alignment explanation
Indices: 6018301--6018578 Score: 556
Period size: 147 Copynumber: 1.9 Consensus size: 147
6018291 AAATTTTTCA
6018301 GGCCATAGCCTGGCCCATGAACACCTCTACCCATCTCTGGCATTGACACTCAAGCCAAGTAACAT
1 GGCCATAGCCTGGCCCATGAACACCTCTACCCATCTCTGGCATTGACACTCAAGCCAAGTAACAT
6018366 GGATCAACAGTGGAAAACCTTAAGCACAAAGGCTGGAGGTTACCTTGCACAAACAATGACAGAGC
66 GGATCAACAGTGGAAAACCTTAAGCACAAAGGCTGGAGGTTACCTTGCACAAACAATGACAGAGC
6018431 ATGGTTCATGGTTCATG
131 ATGGTTCATGGTTCATG
6018448 GGCCATAGCCTGGCCCATGAACACCTCTACCCATCTCTGGCATTGACACTCAAGCCAAGTAACAT
1 GGCCATAGCCTGGCCCATGAACACCTCTACCCATCTCTGGCATTGACACTCAAGCCAAGTAACAT
6018513 GGATCAACAGTGGAAAACCTTAAGCACAAAGGCTGGAGGTTACCTTGCACAAACAATGACAGAGC
66 GGATCAACAGTGGAAAACCTTAAGCACAAAGGCTGGAGGTTACCTTGCACAAACAATGACAGAGC
6018578 A
131 A
6018579 GCACCAAGAG
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
147 131 1.00
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.19
Consensus pattern (147 bp):
GGCCATAGCCTGGCCCATGAACACCTCTACCCATCTCTGGCATTGACACTCAAGCCAAGTAACAT
GGATCAACAGTGGAAAACCTTAAGCACAAAGGCTGGAGGTTACCTTGCACAAACAATGACAGAGC
ATGGTTCATGGTTCATG
Found at i:6024163 original size:21 final size:21
Alignment explanation
Indices: 6024139--6024178 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
6024129 AAAACTATGT
* *
6024139 TAAAAGAAATGAAGAAGGAAG
1 TAAAACAAAAGAAGAAGGAAG
*
6024160 TAAAACAAAAGGAGAAGGA
1 TAAAACAAAAGAAGAAGGA
6024179 GAAGAGAATG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.28, T:0.07
Consensus pattern (21 bp):
TAAAACAAAAGAAGAAGGAAG
Found at i:6031707 original size:26 final size:25
Alignment explanation
Indices: 6031678--6031728 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
6031668 TTATTTTTAT
*
6031678 TTTTATTAAAATATATTTAACAATAA
1 TTTTATTAAAATATA-ATAACAATAA
*
6031704 TTTTATTAAAATTTAATAACAATAA
1 TTTTATTAAAATATAATAACAATAA
6031729 CAATAATCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (25 bp):
TTTTATTAAAATATAATAACAATAA
Found at i:6031911 original size:16 final size:16
Alignment explanation
Indices: 6031882--6031951 Score: 79
Period size: 16 Copynumber: 4.4 Consensus size: 16
6031872 TGAATTACTT
* *
6031882 ATTACAGTTTTATTCC
1 ATTACAGCTCTATTCC
* *
6031898 ATTACCGCTCTATTAC
1 ATTACAGCTCTATTCC
*
6031914 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
6031930 ATTACAG-TCCTATTCC
1 ATTACAGCT-CTATTCC
6031946 ATTACA
1 ATTACA
6031952 CTGAACCAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
15 1 0.02
16 44 0.98
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:6034076 original size:18 final size:18
Alignment explanation
Indices: 6034053--6034087 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
6034043 ACATTGCAGC
6034053 ACTGTGCTGTATAGTTTT
1 ACTGTGCTGTATAGTTTT
6034071 ACTGTGCTGTATAGTTT
1 ACTGTGCTGTATAGTTT
6034088 ATGTATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.11, G:0.23, T:0.49
Consensus pattern (18 bp):
ACTGTGCTGTATAGTTTT
Found at i:6042407 original size:33 final size:33
Alignment explanation
Indices: 6042334--6042444 Score: 125
Period size: 33 Copynumber: 3.2 Consensus size: 33
6042324 GCGGGGTGGT
* *
6042334 GATTATTTCGAAGATGCTCACGAAGATTAATTTTGAA
1 GATTATTTCGAAGATGCTCATGAAG----ATTTTGCA
*
6042371 GATTATTTCGAAGATGCTTATGAAGATTTTGCA
1 GATTATTTCGAAGATGCTCATGAAGATTTTGCA
* *
6042404 GATTATTTCGCAGATGCTCATAAAGATTTT-CAA
1 GATTATTTCGAAGATGCTCATGAAGATTTTGC-A
6042437 GATTATTT
1 GATTATTT
6042445 TAGAAGGCTT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
32 1 0.01
33 43 0.64
37 23 0.34
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (33 bp):
GATTATTTCGAAGATGCTCATGAAGATTTTGCA
Found at i:6047144 original size:24 final size:24
Alignment explanation
Indices: 6047117--6047165 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
6047107 AAAATCTATC
6047117 TTAATTGTTATTATAAATTTAGAT
1 TTAATTGTTATTATAAATTTAGAT
6047141 TTAATTGTTATTATAAATTTAGAT
1 TTAATTGTTATTATAAATTTAGAT
6047165 T
1 T
6047166 GGTTTCGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (24 bp):
TTAATTGTTATTATAAATTTAGAT
Found at i:6052959 original size:15 final size:15
Alignment explanation
Indices: 6052939--6052967 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6052929 TTGATTAAAA
6052939 TGTAAGTATTTATGC
1 TGTAAGTATTTATGC
6052954 TGTAAGTATTTATG
1 TGTAAGTATTTATG
6052968 TTGTCTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.48
Consensus pattern (15 bp):
TGTAAGTATTTATGC
Found at i:6054789 original size:83 final size:83
Alignment explanation
Indices: 6054650--6054818 Score: 329
Period size: 83 Copynumber: 2.0 Consensus size: 83
6054640 ATACAAGATA
6054650 AAAGAAATTTAGGAAAGGAAGAAAAAGAGTGCAAGGAAAAAATAAATGGATAATGGAACATTTAG
1 AAAGAAATTTAGGAAAGGAAGAAAAAGAGTGCAAGGAAAAAATAAATGGATAATGGAACATTTAG
6054715 CACATTAAATATGTGTTT
66 CACATTAAATATGTGTTT
*
6054733 AAAGAAATTTAGTAAAGGAAGAAAAAGAGTGCAAGGAAAAAATAAATGGATAATGGAACATTTAG
1 AAAGAAATTTAGGAAAGGAAGAAAAAGAGTGCAAGGAAAAAATAAATGGATAATGGAACATTTAG
6054798 CACATTAAATATGTGTTT
66 CACATTAAATATGTGTTT
6054816 AAA
1 AAA
6054819 AATAATAAAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 85 1.00
ACGTcount: A:0.51, C:0.05, G:0.21, T:0.23
Consensus pattern (83 bp):
AAAGAAATTTAGGAAAGGAAGAAAAAGAGTGCAAGGAAAAAATAAATGGATAATGGAACATTTAG
CACATTAAATATGTGTTT
Found at i:6054981 original size:7 final size:7
Alignment explanation
Indices: 6054969--6054996 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
6054959 ATATGATTAA
6054969 ATTATTT
1 ATTATTT
6054976 ATTATTT
1 ATTATTT
6054983 ATTATTT
1 ATTATTT
6054990 ATTATTT
1 ATTATTT
6054997 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
ATTATTT
Found at i:6055054 original size:71 final size:74
Alignment explanation
Indices: 6054913--6055055 Score: 175
Period size: 74 Copynumber: 2.0 Consensus size: 74
6054903 TCTTATTAAA
* * * * * *
6054913 TTATATATTATTTTATTAAATTGTATTTAATAATACTTATGTTAAAATATGATTAAATTATTTAT
1 TTATATATTATTTTATTAAATTATATTTAATAATAATTATATTAAAATAT-ATTAAAATAATAAT
*
6054978 TATTTATTAT
65 CATTTATTAT
* *
6054988 TTAT-TATTTTTTTATTAAATTATATTTAATAATAATTTTATTAAAAT-T-TTAAAATAATAATC
1 TTATATATTATTTTATTAAATTATATTTAATAATAATTATATTAAAATATATTAAAATAATAATC
6055050 ATTTAT
66 ATTTAT
6055056 CTAAAAAAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
71 16 0.27
73 1 0.02
74 38 0.64
75 4 0.07
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (74 bp):
TTATATATTATTTTATTAAATTATATTTAATAATAATTATATTAAAATATATTAAAATAATAATC
ATTTATTAT
Found at i:6055167 original size:39 final size:39
Alignment explanation
Indices: 6055108--6055213 Score: 158
Period size: 44 Copynumber: 2.6 Consensus size: 39
6055098 TTTCCTTATG
6055108 CTATTACAACATCTATTCCATTCAACCAAACACAAGAATA
1 CTATTACAAC-TCTATTCCATTCAACCAAACACAAGAATA
6055148 CTATTACAACTCTATTCCATTCCATTCAACCAAACACAAGAATA
1 CTATTACAACTC---T--ATTCCATTCAACCAAACACAAGAATA
6055192 CTATTACAACTCTATTCCATTC
1 CTATTACAACTCTATTCCATTC
6055214 CATTCAACCA
Statistics
Matches: 61, Mismatches: 0, Indels: 11
0.85 0.00 0.15
Matches are distributed among these distances:
39 11 0.18
40 10 0.16
41 1 0.02
42 1 0.02
44 38 0.62
ACGTcount: A:0.40, C:0.29, G:0.02, T:0.29
Consensus pattern (39 bp):
CTATTACAACTCTATTCCATTCAACCAAACACAAGAATA
Found at i:6055175 original size:44 final size:44
Alignment explanation
Indices: 6055122--6055227 Score: 212
Period size: 44 Copynumber: 2.4 Consensus size: 44
6055112 TACAACATCT
6055122 ATTCCATTCAACCAAACACAAGAATACTATTACAACTCTATTCC
1 ATTCCATTCAACCAAACACAAGAATACTATTACAACTCTATTCC
6055166 ATTCCATTCAACCAAACACAAGAATACTATTACAACTCTATTCC
1 ATTCCATTCAACCAAACACAAGAATACTATTACAACTCTATTCC
6055210 ATTCCATTCAACCAAACA
1 ATTCCATTCAACCAAACA
6055228 ACTGAATTAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.42, C:0.30, G:0.02, T:0.26
Consensus pattern (44 bp):
ATTCCATTCAACCAAACACAAGAATACTATTACAACTCTATTCC
Found at i:6055306 original size:16 final size:16
Alignment explanation
Indices: 6055235--6055306 Score: 92
Period size: 16 Copynumber: 4.6 Consensus size: 16
6055225 ACAACTGAAT
*
6055235 TATT-CATTACAGGTC
1 TATTCCATTACAGCTC
*
6055250 TATTCTATTACAGCTC
1 TATTCCATTACAGCTC
*
6055266 TATTCCATTACAACTC
1 TATTCCATTACAGCTC
* *
6055282 TATTACATTGCAGCTC
1 TATTCCATTACAGCTC
6055298 TATTCCATT
1 TATTCCATT
6055307 CCTCCCAACC
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
15 4 0.08
16 44 0.92
ACGTcount: A:0.26, C:0.25, G:0.07, T:0.42
Consensus pattern (16 bp):
TATTCCATTACAGCTC
Found at i:6055863 original size:19 final size:17
Alignment explanation
Indices: 6055825--6055856 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
6055815 TAATTTTAAA
6055825 TAAATTTATTTTTTTGT
1 TAAATTTATTTTTTTGT
6055842 TAAATTT-TTTTTTTG
1 TAAATTTATTTTTTTG
6055857 GACTTAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (17 bp):
TAAATTTATTTTTTTGT
Found at i:6056527 original size:17 final size:16
Alignment explanation
Indices: 6056486--6056527 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
6056476 CATGAAATTT
6056486 AAATATT-TTATTAAA
1 AAATATTATTATTAAA
6056501 ACAATA-TATTATCTAAA
1 A-AATATTATTAT-TAAA
6056518 AAATATTATT
1 AAATATTATT
6056528 TTATTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 2 0.09
16 12 0.52
17 9 0.39
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (16 bp):
AAATATTATTATTAAA
Found at i:6056531 original size:19 final size:18
Alignment explanation
Indices: 6056488--6056532 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 18
6056478 TGAAATTTAA
6056488 ATATTTTATTAAAACAAT
1 ATATTTTATTAAAACAAT
6056506 ATA--TTATCTAAAA-AAT
1 ATATTTTAT-TAAAACAAT
6056522 ATTATTTTATT
1 A-TATTTTATT
6056533 TAATTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
16 8 0.35
17 7 0.30
18 4 0.17
19 4 0.17
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATTTTATTAAAACAAT
Found at i:6060561 original size:2 final size:2
Alignment explanation
Indices: 6060556--6060597 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
6060546 ATACACACAC
*
6060556 AT AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6060598 GTCTTTGAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:6067541 original size:21 final size:21
Alignment explanation
Indices: 6067516--6067555 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6067506 GATGGTTTTA
* *
6067516 AATTAATTTTTGATTCAAAAT
1 AATTAATTTTCGAGTCAAAAT
6067537 AATTAATTTTCGAGTCAAA
1 AATTAATTTTCGAGTCAAA
6067556 TCGAATTCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.42
Consensus pattern (21 bp):
AATTAATTTTCGAGTCAAAAT
Found at i:6069984 original size:17 final size:19
Alignment explanation
Indices: 6069959--6069998 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
6069949 ACTTATCACT
*
6069959 AAATGTTGA-AAACATTTA
1 AAATGTTGATAAAAATTTA
6069977 AAAT-TTGATAAAAATTTA
1 AAATGTTGATAAAAATTTA
6069995 AAAT
1 AAAT
6069999 ATTTAAACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (19 bp):
AAATGTTGATAAAAATTTA
Found at i:6070296 original size:14 final size:15
Alignment explanation
Indices: 6070277--6070306 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
6070267 ATATAATAAA
6070277 AAAGATAA-AAAATT
1 AAAGATAATAAAATT
6070291 AAAGATAATAAAATT
1 AAAGATAATAAAATT
6070306 A
1 A
6070307 TTTTATGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (15 bp):
AAAGATAATAAAATT
Found at i:6070633 original size:16 final size:16
Alignment explanation
Indices: 6070612--6070653 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
6070602 AAAAACTAAA
*
6070612 ATTTTTATAAAAATTT
1 ATTTTTATAAAAATTC
*
6070628 ATTTTTA-CAAAATTC
1 ATTTTTATAAAAATTC
*
6070643 ATTTTTTTAAA
1 ATTTTTATAAA
6070654 TTTTTTTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTTATAAAAATTC
Found at i:6070659 original size:9 final size:10
Alignment explanation
Indices: 6070643--6070667 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
6070633 TACAAAATTC
6070643 ATTTTTTTAA
1 ATTTTTTTAA
6070653 ATTTTTTTAA
1 ATTTTTTTAA
6070663 ATTTT
1 ATTTT
6070668 AATTATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
ATTTTTTTAA
Found at i:6070924 original size:10 final size:9
Alignment explanation
Indices: 6070908--6070942 Score: 52
Period size: 10 Copynumber: 3.7 Consensus size: 9
6070898 AAGATGTGAA
6070908 AAATAAAAT
1 AAATAAAAT
6070917 AGAATAAAAT
1 A-AATAAAAT
6070927 AAATAAAAAT
1 AAAT-AAAAT
6070937 AAATAA
1 AAATAA
6070943 CACATAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 6 0.25
10 18 0.75
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (9 bp):
AAATAAAAT
Found at i:6077040 original size:114 final size:112
Alignment explanation
Indices: 6076727--6077196 Score: 457
Period size: 114 Copynumber: 4.3 Consensus size: 112
6076717 TGTCTAGGAT
* * * * *** *
6076727 GTCTCATCTGAAGCTATCTCGGCTGCACAAATGTCTCCAGGAGCAGCTGGGGGAGGGCCTCCTCA
1 GTCTCATCCGATGCCATCTCGGCTGCCCAAA-GTCTCCAGGAGGTTCT-GGGGAGGGTCTCCTCA
* * *
6076792 GGTTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGACTCATCAAGCAA
64 GGCTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAG
* * *
6076841 ATCTCTTCCGATGCCATCTCGGCTGCCCAAA--CCCCAGGAGTGTT-TGAGGGAGGGTCTCCTCA
1 GTCTCATCCGATGCCATCTCGGCTGCCCAAAGTCTCCAGGAG-GTTCTG-GGGAGGGTCTCCTCA
* * ** *
6076903 GGCTCAGCCTTCTGAACTGTTGGGTGCTGCCTCTGGATTCATCAAGGAG
64 GGCTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAG
* *
6076952 GTCTCATCTGATGCCATCTCGGTTGCCCAAATGTCTCCAGGAGGTTCTGGGGAAGGGTCTCCTCA
1 GTCTCATCCGATGCCATCTCGGCTGCCCAAA-GTCTCCAGGAGGTTCTGGGG-AGGGTCTCCTCA
* *
6077017 GGCTCAGTATTCTGGACTGTTGGGCACTGCCTCTGGGTTCATCAAGCAG
64 GGCTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAG
** * *
6077066 GTCTCATCCGATGCCATCTCAACTGCCCAAAGCTCTCCAGGA-G---T------GG-CTACTGAG
1 GTCTCATCCGATGCCATCTCGGCTGCCCAAAG-TCTCCAGGAGGTTCTGGGGAGGGTCTCCTCAG
* ** *
6077120 G-TCCAGCATTCTGGACTGTTCGGTGCTGCCTCTGGATTGATCAAGCAG
65 GCT-CAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAG
* * *
6077168 GTCTCATCTGATGCCGTCTCAGCTGCCCA
1 GTCTCATCCGATGCCATCTCGGCTGCCCA
6077197 TAATGTGGCT
Statistics
Matches: 301, Mismatches: 46, Indels: 30
0.80 0.12 0.08
Matches are distributed among these distances:
101 1 0.00
102 72 0.24
103 2 0.01
110 2 0.01
111 91 0.30
113 8 0.03
114 125 0.42
ACGTcount: A:0.18, C:0.29, G:0.27, T:0.26
Consensus pattern (112 bp):
GTCTCATCCGATGCCATCTCGGCTGCCCAAAGTCTCCAGGAGGTTCTGGGGAGGGTCTCCTCAGG
CTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAG
Found at i:6077873 original size:19 final size:19
Alignment explanation
Indices: 6077851--6077889 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
6077841 TGAAAGGAGA
6077851 TTCAATAAATCTTCTTTGT
1 TTCAATAAATCTTCTTTGT
6077870 TTCAATAAATCTTCTTTGT
1 TTCAATAAATCTTCTTTGT
6077889 T
1 T
6077890 CTTATTTCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.05, T:0.54
Consensus pattern (19 bp):
TTCAATAAATCTTCTTTGT
Found at i:6080406 original size:18 final size:18
Alignment explanation
Indices: 6080383--6080484 Score: 114
Period size: 18 Copynumber: 5.7 Consensus size: 18
6080373 GGTTGGAGGT
6080383 GATTTGAGTAAGCTTGGC
1 GATTTGAGTAAGCTTGGC
* *
6080401 GATTTGAGTAAGCTCGGA
1 GATTTGAGTAAGCTTGGC
* * *
6080419 GATTTGTGCATGCTTGGC
1 GATTTGAGTAAGCTTGGC
* * *
6080437 GATTTCAGTACGCTTGGA
1 GATTTGAGTAAGCTTGGC
* *
6080455 GGTTTGAGTAAGCTCGGC
1 GATTTGAGTAAGCTTGGC
6080473 GATTTGAGTAAG
1 GATTTGAGTAAG
6080485 ATTGATGATC
Statistics
Matches: 66, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.22, C:0.13, G:0.33, T:0.32
Consensus pattern (18 bp):
GATTTGAGTAAGCTTGGC
Found at i:6082797 original size:6 final size:6
Alignment explanation
Indices: 6082786--6082813 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
6082776 CCAACCCAAC
6082786 CCAAAT CCAAAT CCAAAT CCAAAT CCAA
1 CCAAAT CCAAAT CCAAAT CCAAAT CCAA
6082814 GTAACGGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14
Consensus pattern (6 bp):
CCAAAT
Found at i:6094643 original size:21 final size:21
Alignment explanation
Indices: 6094617--6094659 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
6094607 AATGAAAAAT
* *
6094617 AAAGAAAATAAAAGAAAGTTA
1 AAAGAAAATAAAAAAAAATTA
6094638 AAAGAAAATAAAAAAAAATTA
1 AAAGAAAATAAAAAAAAATTA
6094659 A
1 A
6094660 TTGCTCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (21 bp):
AAAGAAAATAAAAAAAAATTA
Found at i:6094651 original size:11 final size:10
Alignment explanation
Indices: 6094612--6094656 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
6094602 ATGAGAATGA
6094612 AAAAT-AAAG
1 AAAATAAAAG
6094621 AAAATAAAAG
1 AAAATAAAAG
*
6094631 AAAGTTAAAAG
1 AAA-ATAAAAG
*
6094642 AAAATAAAAA
1 AAAATAAAAG
6094652 AAAAT
1 AAAAT
6094657 TAATTGCTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 5 0.16
10 17 0.55
11 9 0.29
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.13
Consensus pattern (10 bp):
AAAATAAAAG
Found at i:6096667 original size:15 final size:15
Alignment explanation
Indices: 6096649--6096677 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6096639 TTAAATATCT
6096649 ATTTTTAATATTTTA
1 ATTTTTAATATTTTA
6096664 ATTTTTAATATTTT
1 ATTTTTAATATTTT
6096678 TTATACTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTAATATTTTA
Found at i:6098168 original size:46 final size:46
Alignment explanation
Indices: 6098021--6098154 Score: 232
Period size: 46 Copynumber: 2.9 Consensus size: 46
6098011 TGTAACCCGC
* * *
6098021 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
6098067 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
6098113 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
6098155 AACCATCCTA
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 84 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:6100577 original size:30 final size:30
Alignment explanation
Indices: 6100533--6100621 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
6100523 CAAAGATAAC
6100533 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
6100562 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
6100592 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
6100622 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:6100581 original size:15 final size:15
Alignment explanation
Indices: 6100533--6100612 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
6100523 CAAAGATAAC
*
6100533 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
6100547 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
6100562 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
6100577 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
6100592 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
6100607 AAGAAA
1 AAGAAA
6100613 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:6100621 original size:15 final size:15
Alignment explanation
Indices: 6100544--6100621 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
6100534 AGAAAACCGA
6100544 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
6100559 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
6100573 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
6100588 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
6100604 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
6100619 ATA
1 ATA
6100622 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:6103715 original size:46 final size:46
Alignment explanation
Indices: 6103568--6103701 Score: 232
Period size: 46 Copynumber: 2.9 Consensus size: 46
6103558 TGTAACCCGC
* * *
6103568 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
6103614 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
6103660 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
6103702 AACCATCCTA
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 84 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:6105635 original size:19 final size:18
Alignment explanation
Indices: 6105611--6105646 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
6105601 GTCAACAAAT
6105611 AATTTAAAAATTATAAAAA
1 AATTTAAAAATT-TAAAAA
6105630 AATTTAAAAATTTAAAA
1 AATTTAAAAATTTAAAA
6105647 TTAAAAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AATTTAAAAATTTAAAAA
Found at i:6110780 original size:13 final size:13
Alignment explanation
Indices: 6110762--6110789 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6110752 TCCGCCACAA
6110762 AGGGCCTTCCTTT
1 AGGGCCTTCCTTT
6110775 AGGGCCTTCCTTT
1 AGGGCCTTCCTTT
6110788 AG
1 AG
6110790 AATACGTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.11, C:0.29, G:0.25, T:0.36
Consensus pattern (13 bp):
AGGGCCTTCCTTT
Found at i:6114121 original size:10 final size:10
Alignment explanation
Indices: 6114094--6114131 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
6114084 ATTAATTCTA
*
6114094 AAAGATAAAT
1 AAAGATAATT
6114104 ACAA-ATAATT
1 A-AAGATAATT
6114114 AAAGATAATT
1 AAAGATAATT
6114124 AAAGATAA
1 AAAGATAA
6114132 AAGCTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAATT
Found at i:6114744 original size:26 final size:26
Alignment explanation
Indices: 6114715--6114822 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
6114705 TGGTACAAAT
*
6114715 TGATAATGGGTTAGGTAAGTGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
6114741 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6114767 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
6114793 TGATAATGGTTTAGGAAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6114819 TGAT
1 TGAT
6114823 GGACATTAGC
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:6114919 original size:64 final size:64
Alignment explanation
Indices: 6114818--6114952 Score: 261
Period size: 64 Copynumber: 2.1 Consensus size: 64
6114808 AAAATGTTCC
6114818 ATGATGGACATTAGCATTTTAATAGTCAATGAATGATGGGCATTAACATTTTAATAGTTAATGG
1 ATGATGGACATTAGCATTTTAATAGTCAATGAATGATGGGCATTAACATTTTAATAGTTAATGG
*
6114882 ATGATGGACATTAGCATTTTAATAGTTAATGAATGATGGGCATTAACATTTTAATAGTTAATGG
1 ATGATGGACATTAGCATTTTAATAGTCAATGAATGATGGGCATTAACATTTTAATAGTTAATGG
6114946 ATGATGG
1 ATGATGG
6114953 GCATGATAAG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 70 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (64 bp):
ATGATGGACATTAGCATTTTAATAGTCAATGAATGATGGGCATTAACATTTTAATAGTTAATGG
Found at i:6114953 original size:32 final size:32
Alignment explanation
Indices: 6114818--6114956 Score: 215
Period size: 32 Copynumber: 4.3 Consensus size: 32
6114808 AAAATGTTCC
* * *
6114818 ATGATGGACATTAGCATTTTAATAGTCAATGA
1 ATGATGGGCATTAACATTTTAATAGTTAATGA
*
6114850 ATGATGGGCATTAACATTTTAATAGTTAATGG
1 ATGATGGGCATTAACATTTTAATAGTTAATGA
* *
6114882 ATGATGGACATTAGCATTTTAATAGTTAATGA
1 ATGATGGGCATTAACATTTTAATAGTTAATGA
*
6114914 ATGATGGGCATTAACATTTTAATAGTTAATGG
1 ATGATGGGCATTAACATTTTAATAGTTAATGA
6114946 ATGATGGGCAT
1 ATGATGGGCAT
6114957 GATAAGCATT
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 97 1.00
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.36
Consensus pattern (32 bp):
ATGATGGGCATTAACATTTTAATAGTTAATGA
Found at i:6117490 original size:25 final size:23
Alignment explanation
Indices: 6117445--6117490 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
6117435 TAATGTTAAA
*
6117445 ATAGAAAAAGTAAATATAATATG
1 ATAGAAAAAGTAAATAAAATATG
*
6117468 ATAGTAAATAAGTAATTAAAATA
1 ATAG-AAA-AAGTAAATAAAATA
6117491 ATACTATACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 3 0.16
25 12 0.63
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.28
Consensus pattern (23 bp):
ATAGAAAAAGTAAATAAAATATG
Found at i:6117649 original size:3 final size:3
Alignment explanation
Indices: 6117641--6117694 Score: 74
Period size: 3 Copynumber: 17.7 Consensus size: 3
6117631 GCATGTATAT
*
6117641 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA ATTA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA
6117686 ATAA ATA AT
1 AT-A ATA AT
6117695 GCTACGAAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 2 0.04
3 39 0.85
4 5 0.11
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6119257 original size:26 final size:26
Alignment explanation
Indices: 6119228--6119280 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6119218 TTTACAGTTT
6119228 TACCCCTAGTAGATAAATT-ACCGAAA
1 TACCCCTAG-AGATAAATTGACCGAAA
* *
6119254 TACCCCTAGAGCTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
6119280 T
1 T
6119281 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.40, C:0.25, G:0.11, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:6122391 original size:17 final size:17
Alignment explanation
Indices: 6122355--6122394 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
6122345 TAATTTTTTA
6122355 AAAATT-TTAAAGATAT
1 AAAATTATTAAAGATAT
6122371 -AAATTATTAAA-ATAGT
1 AAAATTATTAAAGATA-T
6122387 AAAATTAT
1 AAAATTAT
6122395 ATTTTTACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 8 0.38
16 6 0.29
17 7 0.33
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (17 bp):
AAAATTATTAAAGATAT
Found at i:6124135 original size:31 final size:31
Alignment explanation
Indices: 6124099--6124187 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 31
6124089 TTTCTTTAAA
6124099 TGTATATAATTGAATTAAAATGAAAGTTTCG
1 TGTATATAATTGAATTAAAATGAAAGTTTCG
* * * * * * *
6124130 TGTATATATTTTAATCACAATAAAAATTTCT
1 TGTATATAATTGAATTAAAATGAAAGTTTCG
* *
6124161 TGTATATAATTGTACT-AAATGAAAGTT
1 TGTATATAATTGAATTAAAATGAAAGTT
6124188 CATATATTAA
Statistics
Matches: 43, Mismatches: 15, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
30 8 0.19
31 35 0.81
ACGTcount: A:0.42, C:0.06, G:0.11, T:0.42
Consensus pattern (31 bp):
TGTATATAATTGAATTAAAATGAAAGTTTCG
Found at i:6135889 original size:2 final size:2
Alignment explanation
Indices: 6135882--6135909 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6135872 TGCTATAAAG
6135882 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6135910 AATTTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6139703 original size:21 final size:21
Alignment explanation
Indices: 6139677--6139717 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
6139667 AGACGAGCGA
* *
6139677 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
6139698 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
6139718 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:6143596 original size:37 final size:37
Alignment explanation
Indices: 6143554--6143624 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
6143544 ATGAAATTAC
* *
6143554 AATTTGAGTATTATAATTATTATTCAATACATCTTTT
1 AATTTGAGTATAATAATTATTATTCAATAAATCTTTT
*
6143591 AATTTGAGTATAATAATTATTTTTCAATAAATCT
1 AATTTGAGTATAATAATTATTATTCAATAAATCT
6143625 CCTATTGTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.38, C:0.07, G:0.06, T:0.49
Consensus pattern (37 bp):
AATTTGAGTATAATAATTATTATTCAATAAATCTTTT
Found at i:6144760 original size:20 final size:20
Alignment explanation
Indices: 6144735--6144775 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
6144725 TGACTCTTGA
6144735 AATCAGATCAATTGGAAATT
1 AATCAGATCAATTGGAAATT
6144755 AATCAGATCAATTGGAAATT
1 AATCAGATCAATTGGAAATT
6144775 A
1 A
6144776 GAAGTAAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.29
Consensus pattern (20 bp):
AATCAGATCAATTGGAAATT
Found at i:6146623 original size:12 final size:12
Alignment explanation
Indices: 6146606--6146632 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
6146596 GTGTTCTTTA
6146606 TTTTATTTTATT
1 TTTTATTTTATT
6146618 TTTTATTTTATT
1 TTTTATTTTATT
6146630 TTT
1 TTT
6146633 CACAAATTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTATTTTATT
Found at i:6153375 original size:18 final size:19
Alignment explanation
Indices: 6153342--6153378 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
6153332 GATATGATAC
*
6153342 TAAAATTATTTAAAAAAAT
1 TAAAATTATATAAAAAAAT
6153361 TAAAA-TATATAAAAAAAT
1 TAAAATTATATAAAAAAAT
6153379 CAGGGAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAAATTATATAAAAAAAT
Found at i:6153667 original size:22 final size:21
Alignment explanation
Indices: 6153632--6153707 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
6153622 AAAAGGTATC
* *
6153632 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
6153653 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
6153676 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
6153695 TGC-AATCATATCT
1 TACAAATCATATCT
6153708 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:6153724 original size:35 final size:37
Alignment explanation
Indices: 6153661--6153739 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
6153651 ATTACAAAAT
6153661 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
6153697 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
6153732 CATATCAT
1 CATATCAT
6153740 TAAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:6153737 original size:14 final size:15
Alignment explanation
Indices: 6153682--6153737 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
6153672 AGATTGCATA
6153682 TCATATCTAAGATTG
1 TCATATCTAAGATTG
6153697 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
6153715 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
6153732 -CATATC
1 TCATATC
6153738 ATTAAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:6153747 original size:17 final size:19
Alignment explanation
Indices: 6153668--6153739 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
6153658 AATCATATCT
6153668 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
6153687 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
6153705 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
6153722 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
6153740 TAAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:6154136 original size:45 final size:45
Alignment explanation
Indices: 6154081--6154354 Score: 295
Period size: 45 Copynumber: 6.1 Consensus size: 45
6154071 GGAAGGCGAT
* * *
6154081 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGATATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
*
6154126 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
6154171 ATCTGCT-TCTTCAATCTACTCCCTGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
*
6154215 ATCTGTTATC-TCTGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTC-GATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * * * *
6154260 ATCTGTCATCTTGGATCTACT-TCGGTGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGA-G-ATGCCAA
*
6154305 ATCTGTTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAA
1 ATCTGTTA--TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
6154352 ATC
1 ATC
6154355 ATCTTGGATC
Statistics
Matches: 186, Mismatches: 34, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
43 4 0.02
44 48 0.26
45 103 0.55
46 1 0.01
47 18 0.10
48 8 0.04
49 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:6154212 original size:89 final size:89
Alignment explanation
Indices: 6154081--6154354 Score: 311
Period size: 89 Copynumber: 3.0 Consensus size: 89
6154071 GGAAGGCGAT
* * *
6154081 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGATATGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCT-TCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTCGATCTGC
*
6154146 TCCCCGTCTAATACAGAGACGCCAA
65 TCCCCGTCTAATACAGAGATGCCAA
* * *
6154171 ATCTGCTTCTTCAATCTACTCCCTGTCTAATACAGAGATGCCAAATCTGTTATC-TCTGATTTGC
1 ATCTGCTTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTC-GATCTGC
6154235 TCCCCGTCTAATACAGAGATGCCAA
65 TCCCCGTCTAATACAGAGATGCCAA
* * * * * * * * *
6154260 ATCTGTCATCTTGGATCTACT-TCGGTGTAA-ACACATGAAGGTCAGATCTGTTATGTCTTCGAT
1 ATCTG-CTTCTTCGATCTACTCCCCGTCTAATACAGA-G-ATGCCAAATCTGTTA--TCTTCGAT
*
6154323 CTGCTCTCCGTCTAATACAGAGATGCCAA
61 CTGCTCCCCGTCTAATACAGAGATGCCAA
6154352 ATC
1 ATC
6154355 ATCTTGGATC
Statistics
Matches: 158, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
88 6 0.04
89 84 0.53
90 31 0.20
92 35 0.22
93 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (89 bp):
ATCTGCTTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCT
CCCCGTCTAATACAGAGATGCCAA
Found at i:6154423 original size:78 final size:78
Alignment explanation
Indices: 6154294--6154666 Score: 543
Period size: 78 Copynumber: 4.8 Consensus size: 78
6154284 GTGTAAACAC
*
6154294 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
6154359 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
6154372 ATGAAGGTCCA-TTCTGTTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
6154436 TTGGTTCTGCTTCA
65 TTGGATCTGCTTCA
* *
6154450 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGATATGCCAAATCACC
1 ATGAAGGT-CAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
6154514 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * * * * *
6154528 ATGAAGGTCAGATCTGCTGTGTCTTTGATTTGCTCCTCGTCTAATACAGAGATGTCAAATTATCT
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
6154593 TGGATCTGCTGCA
66 TGGATCTGCTTCA
* * * **
6154606 ATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
6154667 TGTTTCTTCG
Statistics
Matches: 264, Mismatches: 29, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
77 2 0.01
78 260 0.98
79 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:6155001 original size:214 final size:217
Alignment explanation
Indices: 6154627--6155175 Score: 843
Period size: 214 Copynumber: 2.5 Consensus size: 217
6154617 ATCTGTTGTG
*
6154627 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
1 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGATA
* * * * *
6154692 ATATAGAGATGCCAAATCATCTTAGATCTACTTTAGCGTAAACACGTGAAAGCCAACTCTGCTAT
66 ATACAGAGATGCCAAATCATCTTAGATCTACTTCAGCGTAAACACCTGAAAGCCAAATCTACTAT
** *
6154757 GTCTTTGATCTGCTCCTTGTCAACGCAAGGATACCAAATCATCTTGGATCTACTTCGATGTGAAG
131 GTCTTCAATCTGCTCCTTGTCAACGCAAGGATACCAAATCATCTTGGATCTACTTCGATGTGAAA
6154822 ACATCCGAAGGTTAGA-T-CTA
196 ACATCCGAAGGTTAGACTGCTA
*
6154842 -CTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGATA
1 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGATA
* * *
6154906 GTACAGAGATGCCAAATCATCTTATATCTACTTCAGCGTAAACACTTGAAAGCCAAATCTACTAT
66 ATACAGAGATGCCAAATCATCTTAGATCTACTTCAGCGTAAACACCTGAAAGCCAAATCTACTAT
* *
6154971 GTCTTCAATCTGCTCCTTGTCAATGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAA
131 GTCTTCAATCTGCTCCTTGTCAACGCAAGGATACCAAATCATCTTGGATCTACTTCGATGTGAAA
6155036 ACATCCGAAGGTTAGATCTGCTA
196 ACATCCGAAGGTTAGA-CTGCTA
* *
6155059 TGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTAA
1 --TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGA
** * ** *
6155124 TAATACAGAGATGTTAAATCATCTTGGATCCGCTTCAGAGTAAACACCTGAA
64 TAATACAGAGATGCCAAATCATCTTAGATCTACTTCAGCGTAAACACCTGAA
6155176 GGTTAAATCT
Statistics
Matches: 302, Mismatches: 26, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
214 196 0.65
216 1 0.00
217 3 0.01
220 102 0.34
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (217 bp):
TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGATA
ATACAGAGATGCCAAATCATCTTAGATCTACTTCAGCGTAAACACCTGAAAGCCAAATCTACTAT
GTCTTCAATCTGCTCCTTGTCAACGCAAGGATACCAAATCATCTTGGATCTACTTCGATGTGAAA
ACATCCGAAGGTTAGACTGCTA
Found at i:6156269 original size:24 final size:24
Alignment explanation
Indices: 6156237--6156295 Score: 118
Period size: 24 Copynumber: 2.5 Consensus size: 24
6156227 GAAAATAAAA
6156237 TATAAGTGGCAAGATAGGGGGATT
1 TATAAGTGGCAAGATAGGGGGATT
6156261 TATAAGTGGCAAGATAGGGGGATT
1 TATAAGTGGCAAGATAGGGGGATT
6156285 TATAAGTGGCA
1 TATAAGTGGCA
6156296 TCCGTATAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (24 bp):
TATAAGTGGCAAGATAGGGGGATT
Found at i:6157415 original size:2 final size:2
Alignment explanation
Indices: 6157408--6157433 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6157398 TACCTAAATT
6157408 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
6157434 AGGGAAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6159492 original size:16 final size:16
Alignment explanation
Indices: 6159471--6159503 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
6159461 GGTATTAAGA
6159471 ACACCAATATATTTCT
1 ACACCAATATATTTCT
6159487 ACACCAATATATTTCT
1 ACACCAATATATTTCT
6159503 A
1 A
6159504 GTTCCATTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.36
Consensus pattern (16 bp):
ACACCAATATATTTCT
Found at i:6167949 original size:20 final size:21
Alignment explanation
Indices: 6167926--6167981 Score: 69
Period size: 20 Copynumber: 2.6 Consensus size: 21
6167916 AATCCTACAT
*
6167926 AAATATTTACATAT-ATATTA
1 AAATATATACATATAATATTA
*
6167946 AAATAAATACATAATAATATTA
1 AAATATATACAT-ATAATATTA
6167968 AAAGTATATACATA
1 AAA-TATATACATA
6167982 AAAAAGTGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 10 0.33
21 2 0.07
22 10 0.33
23 8 0.27
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (21 bp):
AAATATATACATATAATATTA
Found at i:6167951 original size:24 final size:22
Alignment explanation
Indices: 6167933--6167982 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
6167923 CATAAATATT
6167933 TACAT-AT-ATATTAAAATAAA
1 TACATAATAATATTAAAATAAA
*
6167953 TACATAATAATATTAAAAGTATA
1 TACATAATAATATTAAAA-TAAA
6167976 TACATAA
1 TACATAA
6167983 AAAAGTGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 5 0.19
21 2 0.08
22 9 0.35
23 10 0.38
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (22 bp):
TACATAATAATATTAAAATAAA
Found at i:6168111 original size:21 final size:21
Alignment explanation
Indices: 6168081--6168146 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
6168071 ATAATACTGC
*
6168081 ATAAACATATACATATATATA
1 ATAAACATATACACATATATA
* * *
6168102 TTAAAGATATATACATATATA
1 ATAAACATATACACATATATA
6168123 ATAAACATATACTA-ATA-ATA
1 ATAAACATATAC-ACATATATA
6168143 ATAA
1 ATAA
6168147 TTATTATTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
20 7 0.19
21 29 0.78
22 1 0.03
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.33
Consensus pattern (21 bp):
ATAAACATATACACATATATA
Found at i:6168382 original size:23 final size:25
Alignment explanation
Indices: 6168356--6168428 Score: 71
Period size: 26 Copynumber: 3.0 Consensus size: 25
6168346 TAATAGAGAT
6168356 AAAATA-GATATAATA-ATATATAC
1 AAAATATGATATAATATATATATAC
* * *
6168379 AAAATATGGTATTATATATATATAT
1 AAAATATGATATAATATATATATAC
*
6168404 ATATATAT-ATATATATATATATATA
1 A-AAATATGATATA-ATATATATATA
6168429 ACATAGTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
23 6 0.15
24 7 0.17
25 11 0.28
26 16 0.40
ACGTcount: A:0.53, C:0.01, G:0.04, T:0.41
Consensus pattern (25 bp):
AAAATATGATATAATATATATATAC
Found at i:6168396 original size:2 final size:2
Alignment explanation
Indices: 6168391--6168524 Score: 93
Period size: 2 Copynumber: 68.0 Consensus size: 2
6168381 AATATGGTAT
*
6168391 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * *
6168432 TA GTA T- TCA -A GA -A TA TG TA CA TGA GA T- TA TA TA AA AA TA
1 TA -TA TA T-A TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA
* *
6168471 TA TA CA TGG TA T- TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6168512 TA TA TA GTA TA TA
1 TA TA TA -TA TA TA
6168525 CATACTAGAG
Statistics
Matches: 107, Mismatches: 13, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
1 7 0.07
2 94 0.88
3 6 0.06
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.43
Consensus pattern (2 bp):
TA
Found at i:6170263 original size:19 final size:19
Alignment explanation
Indices: 6170239--6170279 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
6170229 ATTATTTTTA
6170239 TATTATTATTA-ATTATATT
1 TATTATTA-TACATTATATT
*
6170258 TATTATTATACATTTTATT
1 TATTATTATACATTATATT
6170277 TAT
1 TAT
6170280 GAATTTAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
TATTATTATACATTATATT
Found at i:6170712 original size:19 final size:18
Alignment explanation
Indices: 6170670--6170713 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
6170660 ATGTTATATT
6170670 TTATAATACATTATTATA
1 TTATAATACATTATTATA
* *
6170688 TATATATTACATTTATTTTA
1 T-TATAATACA-TTATTATA
6170708 TTATAA
1 TTATAA
6170714 AATATACATT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
18 1 0.05
19 12 0.57
20 8 0.38
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.55
Consensus pattern (18 bp):
TTATAATACATTATTATA
Found at i:6172909 original size:25 final size:25
Alignment explanation
Indices: 6172833--6172911 Score: 124
Period size: 25 Copynumber: 3.2 Consensus size: 25
6172823 TGATACAAAT
6172833 TGATAATGGTTAGGTAAATGTTCC-
1 TGATAATGGTTAGGTAAATGTTCCA
* *
6172857 CGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
6172883 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
6172908 TGAT
1 TGAT
6172912 GGGAATTTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
24 6 0.12
25 37 0.76
26 6 0.12
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.37
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:6177548 original size:25 final size:26
Alignment explanation
Indices: 6177490--6177569 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
6177480 TGATACAAAT
6177490 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6177516 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
6177541 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6177566 TGAT
1 TGAT
6177570 GGAAAATTTC
Statistics
Matches: 53, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
24 15 0.28
25 15 0.28
26 23 0.43
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:6184524 original size:26 final size:26
Alignment explanation
Indices: 6184495--6184576 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
6184485 TGATACAAAT
6184495 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
6184521 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6184547 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6184573 TGAT
1 TGAT
6184577 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:6193359 original size:20 final size:21
Alignment explanation
Indices: 6193319--6193362 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
6193309 ATCTTAATTA
* *
6193319 TTAAATTCAATAATATGTTTT
1 TTAAATTAAATAATATATTTT
6193340 TTAAATTAAAT-ATATATTTT
1 TTAAATTAAATAATATATTTT
6193360 TTA
1 TTA
6193363 TAGAACTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
TTAAATTAAATAATATATTTT
Found at i:6194869 original size:21 final size:21
Alignment explanation
Indices: 6194844--6194885 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
6194834 AAAAAGGAAA
6194844 GGAAATTGAGCTTTTTGGCAT
1 GGAAATTGAGCTTTTTGGCAT
6194865 GGAAATTGAGCTTTTTGGCAT
1 GGAAATTGAGCTTTTTGGCAT
6194886 TTGAGTTGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.29, T:0.38
Consensus pattern (21 bp):
GGAAATTGAGCTTTTTGGCAT
Found at i:6199831 original size:69 final size:68
Alignment explanation
Indices: 6199740--6200123 Score: 266
Period size: 69 Copynumber: 5.6 Consensus size: 68
6199730 TTTATAGAGC
* ** * *
6199740 ATTTCTGGTGGTTCTTTGTGTCCAG-AACCAGGAGACT-GTTTTCCTTGGAGTAGACGTTGTTTA
1 ATTTCTGATGGTTCTTCATGTCCAGCAA-CAGG-GACTCATTTT-CTTGGAGTAGACGTGGTTTA
6199803 TCTAGA
63 TCTAGA
* * *
6199809 ATTTCTGATGGCTCTTCATGTCCAGCAACAGGGGGCTCCTTTTCTTGGAGTAGACGTGGTTTATC
1 ATTTCTGATGGTTCTTCATGTCCAGCAACA-GGGACTCATTTTCTTGGAGTAGACGTGGTTTATC
*
6199874 TAGC
65 TAGA
** *
6199878 ATTTCTGACAGTTCTTCATGTCCAGCAACAGTGGACTCATTTTCTTGGAGTAGACG-GATATTAT
1 ATTTCTGATGGTTCTTCATGTCCAGCAACAG-GGACTCATTTTCTTGGAGTAGACGTGGT-TTAT
6199942 CTAGCA
64 CTAG-A
* ** * * ** * *
6199948 A---C----GGCTCTTCATGTCCAAAAATAGGGTGCTCAACTTCTTGGAGTCGACGTCGTTTATC
1 ATTTCTGATGGTTCTTCATGTCCAGCAACAGGG-ACTCATTTTCTTGGAGTAGACGTGGTTTATC
*
6200006 TAGC
65 TAGA
* * ** * * * * **
6200010 ATTTCCGACGCCTCTTCATGTCCAGCGACATGGAGCCCATTTTCTTGGAGTTGACGCCGTTTATC
1 ATTTCTGATGGTTCTTCATGTCCAGCAACAGGGA-CTCATTTTCTTGGAGTAGACGTGGTTTATC
*
6200075 TAGC
65 TAGA
* * * * *
6200079 ATTTCCGAGGGATCTTCATGTCCAGCAACATGAAGCTCATTTTCT
1 ATTTCTGATGGTTCTTCATGTCCAGCAACAGGGA-CTCATTTTCT
6200124 AGCATTTTCG
Statistics
Matches: 254, Mismatches: 45, Indels: 32
0.77 0.14 0.10
Matches are distributed among these distances:
62 3 0.01
63 43 0.17
64 1 0.00
65 1 0.00
67 1 0.00
68 3 0.01
69 193 0.76
70 9 0.04
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.34
Consensus pattern (68 bp):
ATTTCTGATGGTTCTTCATGTCCAGCAACAGGGACTCATTTTCTTGGAGTAGACGTGGTTTATCT
AGA
Found at i:6200079 original size:132 final size:132
Alignment explanation
Indices: 6199818--6200065 Score: 338
Period size: 132 Copynumber: 1.9 Consensus size: 132
6199808 AATTTCTGAT
** *** *
6199818 GGCTCTTCATGTCCAGCAACAGGGGGCTCCTTTTCTTGGAGTAGACGTGGTTTATCTAGCATTTC
1 GGCTCTTCATGTCCAAAAACAGGGGGCTCAACTTCTTGGAGTAGACGTCGTTTATCTAGCATTTC
* * *
6199883 TGACAGTTCTTCATGTCCAGCAACAGTGGACTCATTTTCTTGGAGTAGACGGATATTATCTAGCA
66 CGACAGCTCTTCATGTCCAGCAACAGTGGACCCATTTTCTTGGAGTAGACGGATATTATCTAGCA
6199948 AC
131 AC
* * *
6199950 GGCTCTTCATGTCCAAAAATAGGGTGCTCAACTTCTTGGAGTCGACGTCGTTTATCTAGCATTTC
1 GGCTCTTCATGTCCAAAAACAGGGGGCTCAACTTCTTGGAGTAGACGTCGTTTATCTAGCATTTC
* *
6200015 CGAC-GCCTCTTCATGTCCAGCGACA-TGGAGCCCATTTTCTTGGAGTTGACG
66 CGACAG-CTCTTCATGTCCAGCAACAGTGGA-CCCATTTTCTTGGAGTAGACG
6200066 CCGTTTATCT
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
131 5 0.05
132 95 0.95
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (132 bp):
GGCTCTTCATGTCCAAAAACAGGGGGCTCAACTTCTTGGAGTAGACGTCGTTTATCTAGCATTTC
CGACAGCTCTTCATGTCCAGCAACAGTGGACCCATTTTCTTGGAGTAGACGGATATTATCTAGCA
AC
Found at i:6200148 original size:48 final size:48
Alignment explanation
Indices: 6200073--6200169 Score: 140
Period size: 48 Copynumber: 2.0 Consensus size: 48
6200063 ACGCCGTTTA
*
6200073 TCTAGCATTTCCGAGGGATCTTCATGTCCAGCAACATGAAGCTCATTT
1 TCTAGCATTTCCGAGGGATCTTCATGTCCAACAACATGAAGCTCATTT
* * * * *
6200121 TCTAGCATTTTCGAGGGCTCTTGATGTCTAACAACATGGAGCTCATTT
1 TCTAGCATTTCCGAGGGATCTTCATGTCCAACAACATGAAGCTCATTT
6200169 T
1 T
6200170 TTTGGAGTCG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (48 bp):
TCTAGCATTTCCGAGGGATCTTCATGTCCAACAACATGAAGCTCATTT
Found at i:6200223 original size:117 final size:117
Alignment explanation
Indices: 6200004--6200240 Score: 287
Period size: 117 Copynumber: 2.0 Consensus size: 117
6199994 ACGTCGTTTA
* * *
6200004 TCTAGCATTTCCGACGCCTCTTCATGTCCAGCGACATGGAGCCCATTTTCTTGGAGTTGACGCCG
1 TCTAGCATTTCCGACGCCTCTTCATGTCCAACAACATGGAGCCCATTTTCTTGGAGTCGACGCCG
* ** *
6200069 TTTATCTAGCATTTCCGAGGGATCTTCATGTCCAGCAACATGAAGCTCATTT
66 TTTATATAGCATTTCAAAGAGATCTTCATGTCCAGCAACATGAAGCTCATTT
* * * * * * * *
6200121 TCTAGCATTTTCGAGGGCTCTTGATGTCTAACAACATGGAGCTCATTTTTTTGGAGTCGACGTCG
1 TCTAGCATTTCCGACGCCTCTTCATGTCCAACAACATGGAGCCCATTTTCTTGGAGTCGACGCCG
* * * *
6200186 TTTATATAGCATTTCAAAGAGTTC-TCTGTGTCTAGCAACATGGAGCTCATTT
66 TTTATATAGCATTTCAAAGAGATCTTC-ATGTCCAGCAACATGAAGCTCATTT
6200238 TCT
1 TCT
6200241 TGGAGTCGAC
Statistics
Matches: 100, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
116 2 0.02
117 98 0.98
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.35
Consensus pattern (117 bp):
TCTAGCATTTCCGACGCCTCTTCATGTCCAACAACATGGAGCCCATTTTCTTGGAGTCGACGCCG
TTTATATAGCATTTCAAAGAGATCTTCATGTCCAGCAACATGAAGCTCATTT
Found at i:6200602 original size:129 final size:129
Alignment explanation
Indices: 6200306--6200861 Score: 776
Period size: 129 Copynumber: 4.4 Consensus size: 129
6200296 GGAGATCATT
* * * * * *
6200306 TTCTTGGAGTCGATGTCTTTTATCTAGAATTTTTGAGGGCTCTTCATGTCCATCAAC----A--T
1 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
* *
6200365 -TTTC-CTT-GAGTCGACGTCTTTTATCTAGCATTTCCGA-GGCTCTTCGTGTCCATTGATATG
66 CTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATG
* *
6200425 TTCTTTGAGTCGGCGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
1 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
* *
6200490 CTTTCTCTTGTAGTCGATGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATG
66 CTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATG
* * *
6200554 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTTTTCATGTCCATCAACATGTAGTT
1 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
* * * **
6200619 CTTTCTCTTGGAGTAGACGTCTTTTATCTAGAATTTCCGAGGGCTCTTCGTGTATATCGATATG
66 CTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATG
*
6200683 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGCT
1 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
*
6200748 CATTT-TCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCTATATG
66 C-TTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATG
* * * *
6200812 TTGTTTGATTCGACGCCGTTTATCTAGCATTT-TCGAGGTCTCTTCGTGTC
1 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCT-GAGGGCTCTTCATGTC
6200862 GATCGATATG
Statistics
Matches: 389, Mismatches: 36, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
119 51 0.13
123 1 0.00
125 1 0.00
126 4 0.01
127 3 0.01
128 29 0.07
129 297 0.76
130 3 0.01
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.41
Consensus pattern (129 bp):
TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
CTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATG
Found at i:6200911 original size:318 final size:317
Alignment explanation
Indices: 6200244--6201636 Score: 1254
Period size: 318 Copynumber: 4.4 Consensus size: 317
6200234 ATTTTCTTGG
* * * *
6200244 AGTCGACGTCTTTTATCTAGCATTT-TCGAGGGCTCTTCATGTCCGTCAACTTGGAGATCATTT-
1 AGTCGACGCCGTTTATCTAGCATTTCT-GAGGGCTCTTCATGTCCATCAACTTGGAGTTC-TTTC
* * ** * * * * *
6200307 TCTTGGAGTCGATGTCTTTTATCTAGAATTTTTGAGGGCTCTTCATGTCCATCAACATTTTCCTT
64 TCTTGGAGTAGACGTCTTTTATCTAGAATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCTTT
* * * * *
6200372 GAGTCGACGTCTTTTATCTAGCATTTCCGA-GGCTCTTCGTGT-C--C-A-TT-GA-T-ATGTTC
129 GAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTCATTTTC
* * * * *
6200428 TTTGAGTCGGCGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTT
194 TTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAA--T--A--T-GT
* * *
6200493 TCTCTTGTAGTCGATGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATGTTCT
252 TCT-TTG-AGTCGACGCCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATGTTCT
*
6200558 TTG
315 TTA
* * *
6200561 AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTTTTCATGTCCATCAACATGTAGTTCTTTCTC
1 AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTC
**
6200626 TTGGAGTAGACGTCTTTTATCTAGAATTTCCGAGGGCTCTTCGTGTATATCGATATGTTCTTTGA
66 TTGGAGTAGACGTCTTTTATCTAGAATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGA
6200691 GTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGCTCATTTTCT
131 GTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAG-TCATTTTCT
* * *
6200756 TGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCTATATGTTGTTTGAT
195 TGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATGTTCTTTGAG
* * * *
6200821 TCGACGCCGTTTATCTAGCATTTTCGAGGTCTCTTCGTGTCGATCGATATGTTCTTTA
260 TCGACGCCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATGTTCTTTA
* *
6200879 AGTTGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCTATCAACTTGGAGTTCTTTCTC
1 AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTC
* * *
6200944 TTGGAGTTGACGTCTTTTATCTAGTATTTCCGAAGGCTCTTCGTGTCCATCGATATGTTCTTTGA
66 TTGGAGTAGACGTCTTTTATCTAGAATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGA
*
6201009 GTTGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTC-TTTCTC
131 GTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAG-TCATTT-TC
* ** *
6201073 TTGGAGTCGACGTCTTTTATCTAGCATTTTCGAGGGCTCTTTGTGTCCATCGATATGTTCTTTGA
194 TTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATGTTCTTTGA
* * * *
6201138 GTCGACGCCGTTTATCTAGCATTTCTGAGGGCTTTTCATGTCCATCAACTTGGAGTTCTTTCTCT
259 GTCGACGCCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGA--T--A--T-GTTCT-T
*
6201203 TGG
316 T-A
* * * * * *
6201206 AGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGA--T--A--T-GTTCT-
1 AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTC
* * * * * * *
6201263 TT-GAGTTGACG-CTGTTTATCCAGCATTTCTGAGGGCTCTCCATGTCCATCAACT-TGGAGTTC
66 TTGGAGTAGACGTCT-TTTATCTAGAATTTCCGAGGGCTCTTCGTGTCCATCGA-TAT---GTTC
* * * *
6201325 TTTCTCCTGGAGTCGACGTCTTTTATCTAGCATTTTTGAGGGCTCTTCGTGTCCAT---C---GA
126 --T-T--T-GAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGA
* * * * * ** * **
6201384 -T-ATGTTCTTTGAGTTGACGCCGTTTATCTAGCATTTTTGAGGGCGCTTTTTGTCCATCAACT-
185 GTCATTTTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAA-TA
* * * *
6201446 TGGAGTTCTTTTTGTTGGAGTCGGCGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATC
249 T---GTTC----T-TT-GAGTCGACGCCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATC
**
6201511 GATATGTTCTTGG
305 GATATGTTCTTTA
* * *
6201524 AGTCGACGCCGTTTATCTAGCATTTCTAAGGGCTGC-TCATGTCCACCAACTTGGAGCTCATTT-
1 AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCT-CTTCATGTCCATCAACTTGGAGTTC-TTTC
* * * * * *
6201587 TCTAGGAGTCGACGTCGTTTGTCTA-ACATTTCCGATGGCTCTTCATGTCC
64 TCTTGGAGTAGACGTCTTTTATCTAGA-ATTTCCGAGGGCTCTTCGTGTCC
6201637 GGAAACATGG
Statistics
Matches: 898, Mismatches: 121, Indels: 104
0.80 0.11 0.09
Matches are distributed among these distances:
316 3 0.00
317 136 0.15
318 471 0.52
319 13 0.01
320 13 0.01
321 14 0.02
322 3 0.00
323 6 0.01
324 6 0.01
325 9 0.01
326 9 0.01
327 214 0.24
328 1 0.00
ACGTcount: A:0.16, C:0.22, G:0.21, T:0.40
Consensus pattern (317 bp):
AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTC
TTGGAGTAGACGTCTTTTATCTAGAATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGA
GTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTCATTTTCTT
GGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATGTTCTTTGAGT
CGACGCCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATGTTCTTTA
Found at i:6200965 original size:258 final size:255
Alignment explanation
Indices: 6200121--6201568 Score: 1206
Period size: 258 Copynumber: 5.6 Consensus size: 255
6200111 AAGCTCATTT
* * * * *
6200121 TCTAGCATTT-TCGAGGGCTCTTGATGTCTAACAACATGGAGCTCATTTTTTTGGAGTCGACGTC
1 TCTAGCATTTCT-GAGGGCTCTTCATGTCTATCAACTTGGAGTTC-TTTCTTTGGAGTCGACGTC
* ** * * * *
6200185 GTTTATATAGCATTTCAAAGAGTTC-TCTGTGTCTAGCAACATGGAGCTCATTTTCTTGGAGTCG
64 GTTTATCTAGCATTTCCGAGGGCTCTTC-GTGTCCATCAAC-TGGAG-TCATTTTCTTGGAGTCG
* * * *
6200249 ACGTCTTTTATCTAGCATTTTCGAGGGCTCTTCATGTCCGTCAACTTGGAGATCATTTTCTTGGA
126 ACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGT-C--C-A--T-CA-AT-ATGTTCTTTGA
* * * * * * * *
6200314 GTCGATGTCTTTTATCTAGAATTTTTGAGGGCTCTTCATGTCCATCAACATTTTCCTTGAGTCGA
182 GTCGACGTCTTTTATCTAGCATTTTCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTCGA
* *
6200379 CGTCTTTTA
247 CGCCGTTTA
* * * *
6200388 TCTAGCATTTCCGA-GGCTCTTCGTGTC---C-A-TT-GA-TAT-GTTCTTT-GAGTCGGCGTCG
1 TCTAGCATTTCTGAGGGCTCTTCATGTCTATCAACTTGGAGT-TCTTTCTTTGGAGTCGACGTCG
* * *
6200443 TTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTC-TTTCTCTTGTAGTCGA
65 TTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCAAC-TGGAG-TCATTT-TCTTGGAGTCGA
* * * *
6200507 TGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATGTTCTTTGAGTCGACGCCG
127 CGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATGTTCTTTGAGTCGACGTCT
* * * * *
6200572 TTTATCTAGCA-TTTCTGAGGGCTTTTCATGTCCATCAACATGTAGTTCTTTCTCTTGGAGTAGA
192 TTTATCTAGCATTTTC-GAGGGCTCTTCGTGTCCATC--GA--TA--T-GTTCT-TT-GAGTCGA
* *
6200636 CGTCTTTTA
247 CGCCGTTTA
* * * * * * *
6200645 TCTAGAATTTCCGAGGGCTCTTCGTGTATATCGA--T--A--T-GTTCTTT-GAGTCGACGCCGT
1 TCTAGCATTTCTGAGGGCTCTTCATGTCTATCAACTTGGAGTTCTTTCTTTGGAGTCGACGTCGT
* *
6200702 TTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGCTCATTTTCTTGGAGTCGACG
66 TTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCAAC-TGGAG-TCATTTTCTTGGAGTCGACG
* * * * *
6200767 TCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCTATATGTTGTTTGATTCGACGCCGTT
129 TCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATGTTCTTTGAGTCGACGTCTTT
* * * *
6200832 TATCTAGCATTTTCGAGGTCTCTTCGTGTCGATCGATATGTTCTTTAAGTTGACGCCGTTTA
194 TATCTAGCATTTTCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTCGACGCCGTTTA
* *
6200894 TCTAGCATTTCTGAGGGCTCTTCATGTCTATCAACTTGGAGTTCTTTCTCTTGGAGTTGACGTCT
1 TCTAGCATTTCTGAGGGCTCTTCATGTCTATCAACTTGGAGTTCTTTCT-TTGGAGTCGACGTCG
* * * * * *
6200959 TTTATCTAGTATTTCCGAAGGCTCTTCGTGTCCAT---C--GA-T-ATGTTCTTTGAGTTGACGC
65 TTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCAACTGGAGTCATTTTCTTGGAGTCGACGT
* * *
6201017 CGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTCTTGGAGTCG
130 CTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAA--T--A--T-GTTCT-TT-GAGTCG
*
6201082 ACGTCTTTTATCTAGCATTTTCGAGGGCTCTTTGTGTCCATCGATATGTTCTTTGAGTCGACGCC
186 ACGTCTTTTATCTAGCATTTTCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTCGACGCC
6201147 GTTTA
251 GTTTA
* * *
6201152 TCTAGCATTTCTGAGGGCTTTTCATGTCCATCAACTTGGAGTTCTTTCTCTTGGAGTCGACGTCT
1 TCTAGCATTTCTGAGGGCTCTTCATGTCTATCAACTTGGAGTTCTTTCT-TTGGAGTCGACGTCG
* * *
6201217 TTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCAT---C--GA-T-ATGTTCTTTGAGTTGACG-
65 TTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCAACTGGAGTCATTTTCTTGGAGTCGACGT
* * *
6201274 CTGTTTATCCAGCATTTCTGAGGGCTCTCCATGTCCATCAACT-TGGAGTTCTTTCTCCTGGAGT
130 CT-TTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAA-TAT---GTTC--T-T--T-GAGT
* *
6201338 CGACGTCTTTTATCTAGCATTTTTGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTTGACG
184 CGACGTCTTTTATCTAGCATTTTCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTCGACG
6201403 CCGTTTA
249 CCGTTTA
* * ** * * * *
6201410 TCTAGCATTTTTGAGGGCGCTTTTTGTCCATCAACTTGGAGTTCTTTTTGTTGGAGTCGGCGTCT
1 TCTAGCATTTCTGAGGGCTCTTCATGTCTATCAACTTGGAGTTCTTTCT-TTGGAGTCGACGTCG
* *
6201475 TTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCAT---C--GA-T-ATGTTCTTGGAGTCGACGC
65 TTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCAACTGGAGTCATTTTCTTGGAGTCGACGT
* **
6201533 CGTTTATCTAGCATTTCTAAGGGCTGC-TCATGTCCA
130 CTTTTATCTAGCATTTCCGAGGGCT-CTTCATGTCCA
6201569 CCAACTTGGA
Statistics
Matches: 1020, Mismatches: 113, Indels: 105
0.82 0.09 0.08
Matches are distributed among these distances:
247 3 0.00
248 45 0.04
249 95 0.09
250 4 0.00
251 7 0.01
252 5 0.00
253 3 0.00
254 7 0.01
255 7 0.01
256 17 0.02
257 125 0.12
258 660 0.65
259 9 0.01
260 4 0.00
261 3 0.00
262 2 0.00
263 1 0.00
266 11 0.01
267 12 0.01
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.40
Consensus pattern (255 bp):
TCTAGCATTTCTGAGGGCTCTTCATGTCTATCAACTTGGAGTTCTTTCTTTGGAGTCGACGTCGT
TTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCAACTGGAGTCATTTTCTTGGAGTCGACGTC
TTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATGTTCTTTGAGTCGACGTCTTTTA
TCTAGCATTTTCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTCGACGCCGTTTA
Found at i:6201060 original size:129 final size:129
Alignment explanation
Indices: 6200821--6201636 Score: 1258
Period size: 129 Copynumber: 6.3 Consensus size: 129
6200811 GTTGTTTGAT
* * * * * *
6200821 TCGACGCCGTTTATCTAGCATTTTCGAGGTCTCTTCGTGTCGATCGATATGTTCTTTAAGTTGAC
1 TCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTTGAC
*
6200886 GCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCTATCAACTTGGAGTTCTTTCTCTTGGAG
66 GCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTCTTGGAG
* * *
6200950 TTGACGTCTTTTATCTAGTATTTCCGAAGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTTGAC
1 TCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTTGAC
6201015 GCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTCTTGGAG
66 GCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTCTTGGAG
* * *
6201079 TCGACGTCTTTTATCTAGCATTTTCGAGGGCTCTTTGTGTCCATCGATATGTTCTTTGAGTCGAC
1 TCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTTGAC
*
6201144 GCCGTTTATCTAGCATTTCTGAGGGCTTTTCATGTCCATCAACTTGGAGTTCTTTCTCTTGGAG
66 GCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTCTTGGAG
6201208 TCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTTGAC
1 TCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTTGAC
* * * *
6201273 GCTGTTTATCCAGCATTTCTGAGGGCTCTCCATGTCCATCAACTTGGAGTTCTTTCTCCTGGAG
66 GCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTCTTGGAG
**
6201337 TCGACGTCTTTTATCTAGCATTTTTGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTTGAC
1 TCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTTGAC
* * ** * *
6201402 GCCGTTTATCTAGCATTTTTGAGGGCGCTTTTTGTCCATCAACTTGGAGTTCTTTTTGTTGGAG
66 GCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTCTTGGAG
* * *
6201466 TCGGCGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCTTGGAGTCGAC
1 TCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTTGAC
* * * *
6201531 GCCGTTTATCTAGCATTTCTAAGGGCTGC-TCATGTCCACCAACTTGGAGCTCATTT-TCTAGGA
66 GCCGTTTATCTAGCATTTCTGAGGGCT-CTTCATGTCCATCAACTTGGAGTTC-TTTCTCTTGGA
6201594 G
129 G
* * * * *
6201595 TCGACGTCGTTTGTCTAACATTTCCGATGGCTCTTCATGTCC
1 TCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCC
6201637 GGAAACATGG
Statistics
Matches: 628, Mismatches: 57, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
129 624 0.99
130 4 0.01
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.40
Consensus pattern (129 bp):
TCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCTTTGAGTTGAC
GCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTCTTGGAG
Found at i:6201076 original size:447 final size:446
Alignment explanation
Indices: 6200237--6201312 Score: 1636
Period size: 447 Copynumber: 2.4 Consensus size: 446
6200227 GGAGCTCATT
* * * *
6200237 TTCTTGGAGTCGACGTCTTTTATCTAGCATTT-TCGAGGGCTCTTCATGTCCGTCAACTTGGAGA
1 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCT-GAGGGCTCTTCATGTCCATCAACTTGGAGA
* * ** * *
6200301 TCATTTTCTTGGAGTCGATGTCTTTTATCTAGAATTTTTGAGGGCTCTTCATGTCCATCAACATT
65 TCATTTTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATG
* * * * *
6200366 TTCCTTGAGTCGACGTCTTTTATCTAGCATTTCCGAGGCTCTTCGTGTCCATTGATATGTTCTTT
130 TTCTTTGATTCGACGCCGTTTATCTAGCATTTCCGAGGCTCTTCGTGTCCATCGATATGTTCTTT
* * *
6200431 GAGTCGGCGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCT
195 AAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCT
* * *
6200496 CTTGTAGTCGATGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATGTTCTTTG
260 CTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAAGGCTCTTCATGTCCATCGATATGTTCTTTG
* *
6200561 AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTTTTCATGTCCATCAACATGTAGTTCTTTCTC
325 AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACATGGAGTTCTTTCTC
*
6200626 TTGGAGTAGACGTCTTTTATCTAGAATTTCCGAGGGCTCTTCGTGTATATCGATATG
390 TTGGAGTAGACGTCTTTTATCTAGAATTTCCGAGGGCTCTTCGTGTACATCGATATG
*
6200683 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGCT
1 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGAT
*
6200748 CATTTTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCTATATGT
66 CATTTTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATGT
* * *
6200813 TGTTTGATTCGACGCCGTTTATCTAGCATTTTCGAGGTCTCTTCGTGTCGATCGATATGTTCTTT
131 TCTTTGATTCGACGCCGTTTATCTAGCATTTCCGAGG-CTCTTCGTGTCCATCGATATGTTCTTT
* *
6200878 AAGTTGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCTATCAACTTGGAGTTCTTTCT
195 AAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCT
* * *
6200943 CTTGGAGTTGACGTCTTTTATCTAGTATTTCCGAAGGCTCTTCGTGTCCATCGATATGTTCTTTG
260 CTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAAGGCTCTTCATGTCCATCGATATGTTCTTTG
* *
6201008 AGTTGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTC
325 AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACATGGAGTTCTTTCTC
* * * * *
6201073 TTGGAGTCGACGTCTTTTATCTAGCATTTTCGAGGGCTCTTTGTGTCCATCGATATG
390 TTGGAGTAGACGTCTTTTATCTAGAATTTCCGAGGGCTCTTCGTGTACATCGATATG
* *
6201130 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTTTTCATGTCCATCAACTTGGAGTT
1 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGAT
* *
6201195 C-TTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATG
66 CATTT-TCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATG
* * * * *
6201259 TTCTTTGAGTT-GACGCTGTTTATCCAGCATTTCTGAGGGCTCTCCATGTCCATC
130 TTCTTTGA-TTCGACGCCGTTTATCTAGCATTTCCGA-GGCTCTTCGTGTCCATC
6201313 AACTTGGAGT
Statistics
Matches: 572, Mismatches: 53, Indels: 9
0.90 0.08 0.01
Matches are distributed among these distances:
446 150 0.26
447 418 0.73
448 4 0.01
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.41
Consensus pattern (446 bp):
TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGAT
CATTTTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATGT
TCTTTGATTCGACGCCGTTTATCTAGCATTTCCGAGGCTCTTCGTGTCCATCGATATGTTCTTTA
AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTC
TTGGAGTCGACGTCTTTTATCTAGCATTTCCGAAGGCTCTTCATGTCCATCGATATGTTCTTTGA
GTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACATGGAGTTCTTTCTCT
TGGAGTAGACGTCTTTTATCTAGAATTTCCGAGGGCTCTTCGTGTACATCGATATG
Found at i:6201544 original size:387 final size:385
Alignment explanation
Indices: 6200237--6201636 Score: 1303
Period size: 387 Copynumber: 3.6 Consensus size: 385
6200227 GGAGCTCATT
* * * * * * *
6200237 TTCTTGGAGTCGACGTCTTTTATCTAGCATTT-TCGAGGGCTCTTCATGTCCGTCAACTTGGAGA
1 TTCTTTGAGTTGACGCCGTTTATCTAGCATTTCT-GAGGGCGCTTCATGTCCATCAACTTGGAGT
* * ** * * *
6200301 TCATTT-TCTTGGAGTCGATGTCTTTTATCTAGAATTTTTGAGGGCTCTTCATGTCCATCAACAT
65 TC-TTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATAT
* * * * *
6200365 TTTCCTT-GAGTCGACGTCTTTTATCTAGCATTTCCGA-GGCTCTTCGTGT-C--C-A-TT-GA-
129 GTT-CTTGGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAG
* * * * * * *
6200421 TATGTTCTTTGAGTCGGCGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGG
193 TCTTTTCTTGGAGTCGACGTCGTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGA--T--
* * * * * * * * * *
6200486 AGTTCTTTCTCTTGTAGTCGATGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGA-
254 A--T-GTTCT-TT-AAGTTGACGCCGTTTATCCAGCATTTCTGAGGGCTCTCCATGTCCATCAAC
* * * * * *
6200550 -T--ATGTTC--T-T--T-GAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTTTTCATGTCCA
314 TTGGA-GTTCTTTCTCCTGGAGTCGACGTCTTTTATCTAGCATTTCCGAAGGCTCTTCGTGTCCA
* *
6200606 TCAACATGTAGTTCT
378 TC--GA--TA--T-G
* * * * * * * *
6200621 TTCTCTTGGAGTAGACGTCTTTTATCTAGAATTTCCGAGGGCTCTTCGTGT--AT--A--TCGA-
1 TTCT-TT-GAGTTGACGCCGTTTATCTAGCATTTCTGAGGGCGCTTCATGTCCATCAACTTGGAG
* * * * *
6200679 TAT-GTTCT-TT-GAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACT
64 T-TCTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCAT---C-
* * * *
6200741 TGGAGCTCATTTTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATC
124 --GA--T-ATGTTCTTGGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATC
* * * * * * * *
6200806 TA--T--A-TGTTGT-TT-GATTCGACGCCGTTTATCTAGCATTTTCGAGGTCTCTTCGTGTCGA
184 AACTTGGAGTCTTTTCTTGGAGTCGACGTCGTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCA
* * *
6200864 TCGATATGTTCTTTAAGTTGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCTATCAAC
249 TCGATATGTTCTTTAAGTTGACGCCGTTTATCCAGCATTTCTGAGGGCTCTCCATGTCCATCAAC
* * *
6200929 TTGGAGTTCTTTCTCTTGGAGTTGACGTCTTTTATCTAGTATTTCCGAAGGCTCTTCGTGTCCAT
314 TTGGAGTTCTTTCTCCTGGAGTCGACGTCTTTTATCTAGCATTTCCGAAGGCTCTTCGTGTCCAT
6200994 CGATATG
379 CGATATG
*
6201001 TTCTTTGAGTTGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
1 TTCTTTGAGTTGACGCCGTTTATCTAGCATTTCTGAGGGCGCTTCATGTCCATCAACTTGGAGTT
* *
6201066 CTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTTCGAGGGCTCTTTGTGTCCATCGATATGT
66 CTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGT
* *
6201131 TCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTTTTCATGTCCATCAACTTGGAGTTC
131 TCTTGGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAG-TC
*
6201196 TTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGTT
195 TTT-TCTTGGAGTCGACGTCGTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGTT
* *
6201261 CTTTGAGTTGACGCTGTTTATCCAGCATTTCTGAGGGCTCTCCATGTCCATCAACTTGGAGTTCT
259 CTTTAAGTTGACGCCGTTTATCCAGCATTTCTGAGGGCTCTCCATGTCCATCAACTTGGAGTTCT
** *
6201326 TTCTCCTGGAGTCGACGTCTTTTATCTAGCATTTTTGAGGGCTCTTCGTGTCCATCGATATG
324 TTCTCCTGGAGTCGACGTCTTTTATCTAGCATTTCCGAAGGCTCTTCGTGTCCATCGATATG
* **
6201388 TTCTTTGAGTTGACGCCGTTTATCTAGCATTTTTGAGGGCGCTTTTTGTCCATCAACTTGGAGTT
1 TTCTTTGAGTTGACGCCGTTTATCTAGCATTTCTGAGGGCGCTTCATGTCCATCAACTTGGAGTT
* * *
6201453 CTTTTTGTTGGAGTCGGCGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGT
66 CTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGT
* *
6201518 TCTTGGAGTCGACGCCGTTTATCTAGCATTTCTAAGGGCTGC-TCATGTCCACCAACTTGGAGCT
131 TCTTGGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCT-CTTCATGTCCATCAACTTGGAG-T
* * * * *
6201582 CATTTTCTAGGAGTCGACGTCGTTTGTCTAACATTTCCGATGGCTCTTCATGTCC
194 C-TTTTCTTGGAGTCGACGTCGTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCC
6201637 GGAAACATGG
Statistics
Matches: 857, Mismatches: 108, Indels: 99
0.81 0.10 0.09
Matches are distributed among these distances:
377 42 0.05
378 135 0.16
379 6 0.01
380 17 0.02
381 8 0.01
382 4 0.00
383 5 0.01
384 14 0.02
385 12 0.01
386 78 0.09
387 523 0.61
388 6 0.01
389 4 0.00
390 2 0.00
391 1 0.00
ACGTcount: A:0.16, C:0.22, G:0.21, T:0.40
Consensus pattern (385 bp):
TTCTTTGAGTTGACGCCGTTTATCTAGCATTTCTGAGGGCGCTTCATGTCCATCAACTTGGAGTT
CTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGT
TCTTGGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTCT
TTTCTTGGAGTCGACGTCGTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATGTTCT
TTAAGTTGACGCCGTTTATCCAGCATTTCTGAGGGCTCTCCATGTCCATCAACTTGGAGTTCTTT
CTCCTGGAGTCGACGTCTTTTATCTAGCATTTCCGAAGGCTCTTCGTGTCCATCGATATG
Found at i:6201718 original size:123 final size:123
Alignment explanation
Indices: 6201558--6201805 Score: 304
Period size: 123 Copynumber: 2.0 Consensus size: 123
6201548 TCTAAGGGCT
6201558 GCTCATGTCCACCAACTTGGAGCTCATTTTCTAGGAGTCGACG-TCGTTTG-TCTAACATTTCCG
1 GCTCATGTCCACCAACTTGGAGCTCATTTTCTAGGAGTCGACGCT-G-TTGATCTAACATTTCCG
* * ** **
6201621 ATGGCTCTTCATGTCCGGAAACATGGATTTTGTTTTCTTGGAGTCGACCTAGTTTATCTA
64 AGGGCTCTTCATGTCCAGAAACATGGAGCTCATTTTCTTGGAGTCGACCTAGTTTATCTA
* * * **
6201681 GCTCATGTCCAGCAA-TATGGAGCTCATTTTCTTGGAGTTGACGCTGTTGATCTAGTATTTCCGA
1 GCTCATGTCCACCAACT-TGGAGCTCATTTTCTAGGAGTCGACGCTGTTGATCTAACATTTCCGA
** * * *
6201745 GGGCTCTTCATGTCCATCAACATGGAGCTCATTTTCTTGGAGTCGACGTCGTTTATTTA
65 GGGCTCTTCATGTCCAGAAACATGGAGCTCATTTTCTTGGAGTCGACCTAGTTTATCTA
6201804 GC
1 GC
6201806 ATTTCCGATG
Statistics
Matches: 106, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
122 4 0.04
123 101 0.95
124 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.36
Consensus pattern (123 bp):
GCTCATGTCCACCAACTTGGAGCTCATTTTCTAGGAGTCGACGCTGTTGATCTAACATTTCCGAG
GGCTCTTCATGTCCAGAAACATGGAGCTCATTTTCTTGGAGTCGACCTAGTTTATCTA
Found at i:6201793 original size:192 final size:192
Alignment explanation
Indices: 6201517--6201874 Score: 520
Period size: 192 Copynumber: 1.9 Consensus size: 192
6201507 CATCGATATG
* * *
6201517 TTCTTGGAGTCGACGCCGTTTATCTAGCATTTCTAAGGGCTGCTCATGTCCACCAACTTGGAGCT
1 TTCTTGGAGTCGACGCCGTTGATCTAGCATTTCCAAGGGCTGCTCATGTCCACCAACATGGAGCT
*
6201582 CATTTTCTAGGAGTCGACGTCGTTTGTCTAACATTTCCGATGGCTCTTCATGTCCGGAAACATGG
66 CATTTTCTAGGAGTCGACGTCGTTTATCTAACATTTCCGATGGCTCTTCATGTCCGGAAACATGG
** **
6201647 ATTTTGTTTTCTTGGAGTCGACCTAGTTTATCTAGCTCATGTCCAGCAATATGGAGCTCATT
131 AGCTCATTTTCTTGGAGTCGACCTAGTTTATCTAGCTCATGTCCAGCAATATGGAGCTCATT
* * * * *
6201709 TTCTTGGAGTTGACGCTGTTGATCTAGTATTTCCGAGGGCT-CTTCATGTCCATCAACATGGAGC
1 TTCTTGGAGTCGACGCCGTTGATCTAGCATTTCCAAGGGCTGC-TCATGTCCACCAACATGGAGC
* * * *
6201773 TCATTTTCTTGGAGTCGACGTCGTTTATTTAGCATTTCCGATGGCTCTTCATGTCCGGTAACATG
65 TCATTTTCTAGGAGTCGACGTCGTTTATCTAACATTTCCGATGGCTCTTCATGTCCGGAAACATG
** *
6201838 GAGCTCATTTTCTTGGTTTCGACCTTGTTTATCTAGC
130 GAGCTCATTTTCTTGGAGTCGACCTAGTTTATCTAGC
6201875 ATTTCCGGCT
Statistics
Matches: 145, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
191 1 0.01
192 144 0.99
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.37
Consensus pattern (192 bp):
TTCTTGGAGTCGACGCCGTTGATCTAGCATTTCCAAGGGCTGCTCATGTCCACCAACATGGAGCT
CATTTTCTAGGAGTCGACGTCGTTTATCTAACATTTCCGATGGCTCTTCATGTCCGGAAACATGG
AGCTCATTTTCTTGGAGTCGACCTAGTTTATCTAGCTCATGTCCAGCAATATGGAGCTCATT
Found at i:6201810 original size:69 final size:69
Alignment explanation
Indices: 6201683--6202056 Score: 339
Period size: 69 Copynumber: 5.5 Consensus size: 69
6201673 TTTATCTAGC
* * * * *
6201683 TCATGTCCAGCAATATGGAGCTCATTTTCTTGGAGTTGACG-CTGTTGATCTAGTATTTCCGAGG
1 TCATGTCCAGCAACATGGAGCTCATTTTCTTGGAGTAGACGTC-GTTTATCTAGCATTTCCGACG
6201747 GCTCT
65 GCTCT
* * * *
6201752 TCATGTCCATCAACATGGAGCTCATTTTCTTGGAGTCGACGTCGTTTATTTAGCATTTCCGATGG
1 TCATGTCCAGCAACATGGAGCTCATTTTCTTGGAGTAGACGTCGTTTATCTAGCATTTCCGACGG
6201817 CTCT
66 CTCT
* * ** * * *
6201821 TCATGTCCGGTAACATGGAGCTCATTTTCTTGGTTTCGACCTTGTTTATCTAGCATTT-C--CGG
1 TCATGTCCAGCAACATGGAGCTCATTTTCTTGGAGTAGACGTCGTTTATCTAGCATTTCCGACGG
6201883 CTCT
66 CTCT
** * * * * * * *
6201887 TCACCTCCAGGAACATGTG-GCTC-TTTTCCTTGGAGGAGAGGTTGTTGATCTAGCGTTTCTGAC
1 TCATGTCCAGCAACATG-GAGCTCATTTT-CTTGGAGTAGACGTCGTTTATCTAGCATTTCCGAC
6201950 GGCTCT
64 GGCTCT
* * * * * * *
6201956 TCGTGTCCAGCGACA-GGTGGCTCTTTTTCTTGGAGTAGAGGTCGTTTATTTAGCATTTCAGACG
1 TCATGTCCAGCAACATGG-AGCTCATTTTCTTGGAGTAGACGTCGTTTATCTAGCATTTCCGACG
*
6202020 GTTCT
65 GCTCT
* * *
6202025 TCATGTCCAGCAACAGGGGGCTCTTTTTCTTG
1 TCATGTCCAGCAACATGGAGCTCATTTTCTTG
6202057 AAGAAAACGA
Statistics
Matches: 252, Mismatches: 43, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
65 4 0.02
66 45 0.18
67 2 0.01
68 2 0.01
69 192 0.76
70 7 0.03
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (69 bp):
TCATGTCCAGCAACATGGAGCTCATTTTCTTGGAGTAGACGTCGTTTATCTAGCATTTCCGACGG
CTCT
Found at i:6206118 original size:46 final size:46
Alignment explanation
Indices: 6206068--6206243 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
6206058 TGGTTGAGCA
6206068 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
6206114 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
6206159 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
6206207 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
6206244 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:6206224 original size:93 final size:93
Alignment explanation
Indices: 6206065--6206236 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
6206055 GGATGGTTGA
* * *
6206065 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
6206130 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
6206158 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
6206223 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
6206237 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:6208271 original size:2 final size:2
Alignment explanation
Indices: 6208264--6208320 Score: 87
Period size: 2 Copynumber: 28.5 Consensus size: 2
6208254 GATGGGAGTT
* *
6208264 TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
6208306 TA TA TA TA TT TA TA T
1 TA TA TA TA TA TA TA T
6208321 TTGTTTATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6211140 original size:26 final size:26
Alignment explanation
Indices: 6211040--6211149 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
6211030 CATGAAATTC
6211040 TTATCATGAAACATTTACCTAAACC-A
1 TTATCATGAAACATTTACCT-AACCTA
*
6211066 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
6211092 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
6211118 TTATCATGGAACATTTACCTAACCTT
1 TTATCATGAAACATTTACCTAACCTA
6211144 TTATCA
1 TTATCA
6211150 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 4 0.05
26 76 0.95
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:6213474 original size:24 final size:25
Alignment explanation
Indices: 6213433--6213488 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
6213423 ATTATTACTA
*
6213433 ATTATTATTATTGCTAGTAT-TGTT
1 ATTATTATTAATGCTAGTATATGTT
*
6213457 ATTATTATTAAT-CTTAGTGTATGTT
1 ATTATTATTAATGC-TAGTATATGTT
6213482 -TTATTAT
1 ATTATTAT
6213489 ATGTATGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 1 0.04
24 23 0.82
25 4 0.14
ACGTcount: A:0.27, C:0.04, G:0.11, T:0.59
Consensus pattern (25 bp):
ATTATTATTAATGCTAGTATATGTT
Found at i:6213550 original size:3 final size:3
Alignment explanation
Indices: 6213542--6213578 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
6213532 TTTATTCTAA
6213542 TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6213579 ATTTAGTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.12
3 28 0.88
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:6213550 original size:14 final size:14
Alignment explanation
Indices: 6213533--6213579 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
6213523 TTTAATTACT
*
6213533 TTATTCTAATATTA
1 TTATTATAATATTA
*
6213547 TTATTATATTATTA
1 TTATTATAATATTA
6213561 TTATTAT--TATTA
1 TTATTATAATATTA
6213573 -TATTATA
1 TTATTATA
6213580 TTTAGTTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 6 0.20
12 5 0.17
14 19 0.63
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (14 bp):
TTATTATAATATTA
Found at i:6213858 original size:16 final size:16
Alignment explanation
Indices: 6213839--6213899 Score: 59
Period size: 16 Copynumber: 3.6 Consensus size: 16
6213829 TTTTTTTAAA
6213839 ATATTATATTTTTCAT
1 ATATTATATTTTTCAT
*
6213855 ATATTATGTATTTTTTTAT
1 ATATTA--TA-TTTTTCAT
* *
6213874 ATATTATATTATTCGT
1 ATATTATATTTTTCAT
*
6213890 ATATTTTATT
1 ATATTATATT
6213900 ATATTATATT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
16 20 0.54
17 2 0.05
18 2 0.05
19 13 0.35
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (16 bp):
ATATTATATTTTTCAT
Found at i:6213869 original size:19 final size:18
Alignment explanation
Indices: 6213818--6213880 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 18
6213808 TTAATACTCT
*
6213818 TATATTAAGTATTTTTTTAA
1 TATATTATGTA-TTTTTT-A
* *
6213838 AATATTA--TATTTTTCA
1 TATATTATGTATTTTTTA
6213854 TATATTATGTATTTTTTTA
1 TATATTATGTA-TTTTTTA
6213873 TATATTAT
1 TATATTAT
6213881 ATTATTCGTA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
16 7 0.19
17 5 0.14
18 4 0.11
19 14 0.39
20 6 0.17
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (18 bp):
TATATTATGTATTTTTTA
Found at i:6213878 original size:35 final size:36
Alignment explanation
Indices: 6213818--6213894 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 36
6213808 TTAATACTCT
*
6213818 TATATTAAGTATTTTTTTAAAATATTATATTTTTCA
1 TATATTAAGTATTTTTTTAAAATATTATATTATTCA
* * *
6213854 TATATTATGTATTTTTTT-ATATATTATATTATTCG
1 TATATTAAGTATTTTTTTAAAATATTATATTATTCA
6213889 TATATT
1 TATATT
6213895 TTATTATATT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 20 0.54
36 17 0.46
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (36 bp):
TATATTAAGTATTTTTTTAAAATATTATATTATTCA
Found at i:6213885 original size:24 final size:24
Alignment explanation
Indices: 6213854--6213934 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 24
6213844 ATATTTTTCA
6213854 TATATTATGTATTTTTTTATATAT
1 TATATTATGTATTTTTTTATATAT
** * *
6213878 TATATTAT-TCGTATATT-T-TAT
1 TATATTATGTATTTTTTTATATAT
* *
6213899 TATATTATAT-TTTTTTTAAATAAT
1 TATATTATGTATTTTTTTATAT-AT
6213923 TATATTATGTAT
1 TATATTATGTAT
6213935 ATATTTGTAA
Statistics
Matches: 43, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
21 15 0.35
22 2 0.05
23 6 0.14
24 19 0.44
25 1 0.02
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.63
Consensus pattern (24 bp):
TATATTATGTATTTTTTTATATAT
Found at i:6213891 original size:26 final size:24
Alignment explanation
Indices: 6213854--6214048 Score: 76
Period size: 26 Copynumber: 8.1 Consensus size: 24
6213844 ATATTTTTCA
*
6213854 TATATTATGTAT-TTTTTTATATAT
1 TATATTATGTATATTTTAT-TATAT
6213878 TATATTATTCGTATATTTTATTATAT
1 TATATTA-T-GTATATTTTATTATAT
* *
6213904 TATATT-T-T-T-TTTAAATA-AT
1 TATATTATGTATATTTTATTATAT
* *
6213923 TATATTATGTATATATTTGTAAATAT
1 TATATTATGTATAT-TTTAT-TATAT
* * *
6213949 CATACTAT-TCATATATTT-TTATGT
1 TATATTATGT-ATAT-TTTATTATAT
*
6213973 TAT-TTCATTTATATATTT-TTATAT
1 TATATT-ATGTATAT-TTTATTATAT
*
6213997 TATTAGTTATATATATTTTA-TACTAT
1 TA-TA-TTATGTATATTTTATTA-TAT
6214023 T-TCATGTATGTAT-TTTT-TTATAT
1 TAT-AT-TATGTATATTTTATTATAT
6214046 TAT
1 TAT
6214049 CCTTATTATT
Statistics
Matches: 133, Mismatches: 16, Indels: 44
0.69 0.08 0.23
Matches are distributed among these distances:
19 8 0.06
20 7 0.05
21 2 0.02
22 2 0.02
23 6 0.05
24 41 0.31
25 18 0.14
26 42 0.32
27 7 0.05
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (24 bp):
TATATTATGTATATTTTATTATAT
Found at i:6213938 original size:45 final size:45
Alignment explanation
Indices: 6213854--6213940 Score: 115
Period size: 45 Copynumber: 1.9 Consensus size: 45
6213844 ATATTTTTCA
* * *
6213854 TATATTATGTATTTTTTTATATATTATATTATTCGTATATTTTAT
1 TATATTATATATTTTTTTAAATATTATATTATTCATATATTTTAT
6213899 TATATTATAT-TTTTTTTAAATAATTATATTATGT-ATATATTT
1 TATATTATATATTTTTTTAAAT-ATTATATTAT-TCATATATTT
6213941 GTAAATATCA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 10 0.27
45 26 0.70
46 1 0.03
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.63
Consensus pattern (45 bp):
TATATTATATATTTTTTTAAATATTATATTATTCATATATTTTAT
Found at i:6213990 original size:24 final size:24
Alignment explanation
Indices: 6213959--6214048 Score: 94
Period size: 24 Copynumber: 3.7 Consensus size: 24
6213949 CATACTATTC
*
6213959 ATATATTTTTATGTTATTTCATTT
1 ATATATTTTTATATTATTTCATTT
*
6213983 ATATATTTTTATATTA-TT-AGTT
1 ATATATTTTTATATTATTTCATTT
*
6214005 ATATATATTTTATACTATTTCATGTAT
1 ATATAT-TTTTATATTATTTCAT-T-T
* *
6214032 GTATTTTTTTATATTAT
1 ATATATTTTTATATTAT
6214049 CCTTATTATT
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
22 9 0.17
23 11 0.20
24 17 0.31
25 1 0.02
26 11 0.20
27 5 0.09
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.63
Consensus pattern (24 bp):
ATATATTTTTATATTATTTCATTT
Found at i:6215566 original size:26 final size:26
Alignment explanation
Indices: 6215537--6215646 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
6215527 TGATACAAAT
6215537 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
6215563 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
6215589 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
6215615 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6215641 TGATAA
1 TGATAA
6215647 GAAATTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:6216236 original size:26 final size:26
Alignment explanation
Indices: 6216207--6216259 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6216197 TTTACAGTTT
6216207 TACCCCTAGGAGATAAATT-ACCAAAA
1 TACCCCTAGG-GATAAATTGACCAAAA
* *
6216233 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCAAAA
6216259 T
1 T
6216260 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCAAAA
Found at i:6216753 original size:137 final size:137
Alignment explanation
Indices: 6216507--6216793 Score: 538
Period size: 137 Copynumber: 2.1 Consensus size: 137
6216497 GAGTAGTCTC
6216507 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
*
6216572 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCCCTGGCCCAGTACC
6216637 ACTGTTA
131 ACTGTTA
6216644 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
*
6216709 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCCCTGGCTCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCCCTGGCCCAGTACC
6216774 ACTGTTA
131 ACTGTTA
**
6216781 CCTGAATGGGCTT
1 CCCAAATGGGCTT
6216794 AGGCCCAATG
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCCCTGGCCCAGTACC
ACTGTTA
Found at i:6221879 original size:26 final size:26
Alignment explanation
Indices: 6221850--6221959 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
6221840 TGATACAAAT
6221850 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
6221876 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
6221902 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
6221928 TGATAATGGCTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6221954 TGATAA
1 TGATAA
6221960 GAAATTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:6222550 original size:26 final size:26
Alignment explanation
Indices: 6222520--6222572 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6222510 TTTATAGTTT
6222520 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
6222546 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
6222572 T
1 T
6222573 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:6223066 original size:137 final size:137
Alignment explanation
Indices: 6222820--6223106 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
6222810 GAGTAGTCTC
6222820 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
6222885 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
6222950 ACTGTTA
131 ACTGTTA
6222957 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
*
6223022 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCTCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
6223087 ACTGTTA
131 ACTGTTA
**
6223094 CCTGAATGGGCTT
1 CCCAAATGGGCTT
6223107 AGGCCCAATG
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:6235271 original size:150 final size:149
Alignment explanation
Indices: 6234978--6235439 Score: 567
Period size: 150 Copynumber: 3.1 Consensus size: 149
6234968 TGATGTTTTT
* * *
6234978 ATTTCTGTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAG--ACATGCTG
1 ATTTCTGTTTT--CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCTG
* * *
6235041 AGGTAATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
64 AGGT-ATTTTCAATTTATGTTTTTC---AAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCT
* *
6235106 CAGG--ACACGCTGAGGTAATTTCA
125 CAGGTCACATGCTGAGGTATTTTCA
* * * * *
6235129 ATTTCTGTTTGTCAAAAATCAACTCGTATTGCAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGA
1 ATTTCTGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCTGA
* * *
6235194 GGTATTTTCAATTTATGTTTTTCAAAAATCAATTCATATTACTAGAGGAGAGTTGAGCCTCAGGT
65 GGTATTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGGT
*
6235259 CACATGCCGAGGTATTTTCA
130 CACATGCTGAGGTATTTTCA
* * *
6235279 ATTTATG-TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCGCATGCTGAG
1 ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCTGAG
* * * * *
6235343 GTATTTTCAATTCCTAT-TTTTTAAAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCTTCAA
66 GTATTTTCAATT--TATGTTTTTCAAAAA-TCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAG
6235407 GTCACATGCTGAGGTATTTTCA
128 GTCACATGCTGAGGTATTTTCA
6235429 ATTTCTGTTTT
1 ATTTCTGTTTT
6235440 TCAATTTCTG
Statistics
Matches: 267, Mismatches: 35, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
148 97 0.36
149 12 0.04
150 116 0.43
151 31 0.12
152 11 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (149 bp):
ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCTGAG
GTATTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGGTC
ACATGCTGAGGTATTTTCA
Found at i:6235440 original size:77 final size:75
Alignment explanation
Indices: 6234978--6235440 Score: 533
Period size: 77 Copynumber: 6.2 Consensus size: 75
6234968 TGATGTTTTT
* *
6234978 ATTTCTGTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAG--ACATGCTG
1 ATTTCTGTTTT-TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATGCTG
6235041 AGGTAATTTTCA
65 AGGT-ATTTTCA
* * *
6235053 ATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACACGC
1 ATTTCTGT-TTT--TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATGC
*
6235116 TGAGGTAATTTCA
63 TGAGGTATTTTCA
* * * * * * * *
6235129 ATTTCTGTTTGTCAAAAATCAACTCGTATTGCAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGA
1 ATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATGCTGA
6235194 GGTATTTTCA
66 GGTATTTTCA
* * * * * * * *
6235204 ATTTATGTTTTTCAAAAATCAATTCATATTACTAGAGGAGAGTTGAGCCTCAGGTCACATGCCGA
1 ATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATGCTGA
6235269 GGTATTTTCA
66 GGTATTTTCA
* * * * *
6235279 ATTTATG--TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCGCATGCTGA
1 ATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATGCTGA
6235342 GGTATTTTCA
66 GGTATTTTCA
* * * * *
6235352 ATTCCTATTTTTTAAAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCTTCAAGTCACATGCT
1 ATTTCT-GTTTTTAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATGCT
6235417 GAGGTATTTTCA
64 GAGGTATTTTCA
6235429 ATTTCTGTTTTT
1 ATTTCTGTTTTT
6235441 CAATTTCTGC
Statistics
Matches: 341, Mismatches: 38, Indels: 17
0.86 0.10 0.04
Matches are distributed among these distances:
73 100 0.29
74 1 0.00
75 101 0.30
76 32 0.09
77 107 0.31
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (75 bp):
ATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATGCTGA
GGTATTTTCA
Found at i:6235442 original size:14 final size:14
Alignment explanation
Indices: 6235423--6235457 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
6235413 TGCTGAGGTA
*
6235423 TTTTCAATTTCTGT
1 TTTTCAATTTCTGC
6235437 TTTTCAATTTCTGC
1 TTTTCAATTTCTGC
6235451 TTTTCAA
1 TTTTCAA
6235458 AAAATCAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGC
Found at i:6235550 original size:88 final size:89
Alignment explanation
Indices: 6235346--6235755 Score: 399
Period size: 88 Copynumber: 4.6 Consensus size: 89
6235336 TGCTGAGGTA
* * *
6235346 TTTTCAATTCCTAT-TTTTTAAAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAG-CTTCAAGT
1 TTTTCAATT--TATATTTTTCAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-AAGT
6235409 CACATGCTGAGGTATTTTCAATTTCTGT
62 CACATGCTGAGGTATTTTCAATTTCTGT
* ** *
6235437 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-AG-GAC
1 TTTTCAATTTATATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGTCAC
* *
6235500 ACGCTGAGGTATTTTCAATTTGTGTT
65 ATGCTGAGGTATTTTCAATTTCTG-T
*
6235526 TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTTCAC
1 TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAG-TCAC
** *
6235591 ATG-TCGAGGTATTTTCAAAATCTGC
65 ATGCT-GAGGTATTTTCAATTTCTGT
* * * * * *
6235616 TTTTCAAATTA-A-GTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAACCTT-GGCTCAT
1 TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAG-TCAC
* * *
6235678 GTGCTGAGCTATTTTCAATTTCTAT
65 ATGCTGAGGTATTTTCAATTTCTGT
* * * * * **
6235703 TTTT-AATGTCTAGTTTT-AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 TTTTCAATTTATATTTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGC
6235756 TCAGGATCAC
Statistics
Matches: 267, Mismatches: 40, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
86 3 0.01
87 29 0.11
88 132 0.49
89 24 0.09
90 42 0.16
91 37 0.14
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (89 bp):
TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGTCACA
TGCTGAGGTATTTTCAATTTCTGT
Found at i:6235737 original size:176 final size:178
Alignment explanation
Indices: 6235361--6235755 Score: 448
Period size: 176 Copynumber: 2.2 Consensus size: 178
6235351 AATTCCTATT
* *
6235361 TTTTAAAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAG-CTTCAAGTCACATGCTGAGGTATT
1 TTTT-AAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAAGTCACATGCTGAGGTATT
** * * ** *
6235425 TTCAATTTCTGTTTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
65 TTCAAAATCTGCTTTTCAAATTAAGC-TTTCAAAAAACCAACTCATATTGCGAGAGGTGAGTTGA
* * * * * *
6235490 GCCTTAGGACACGCTGAGGTATTTTCAATTTGTGTTTTTTCAATTTATAT
129 ACCTTAGGACACGCTGAGCTATTTTCAATTTCTGATTTTTCAATGTATAG
*
6235540 TTTTCAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GAGTTCACATG-TCGAGGTA
1 TTTT-AAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAAG-TCACATGCT-GAGGTA
6235602 TTTTCAAAATCTGCTTTTCAAATTAAG-TTTC-AAAAACCAACTCATATTGCGAGAGGTGAGTTG
63 TTTTCAAAATCTGCTTTTCAAATTAAGCTTTCAAAAAACCAACTCATATTGCGAGAGGTGAGTTG
* * *
6235665 AACCTT-GGCTCATGTGCTGAGCTATTTTCAATTTCT-ATTTTT-AATGTCTAG
128 AACCTTAGG-ACA--CGCTGAGCTATTTTCAATTTCTGATTTTTCAATGTATAG
* * **
6235716 TTTTAAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 TTTTAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGC
6235756 TCAGGATCAC
Statistics
Matches: 185, Mismatches: 24, Indels: 17
0.82 0.11 0.08
Matches are distributed among these distances:
175 6 0.03
176 75 0.41
177 9 0.05
178 49 0.26
179 46 0.25
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.37
Consensus pattern (178 bp):
TTTTAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAAGTCACATGCTGAGGTATTT
TCAAAATCTGCTTTTCAAATTAAGCTTTCAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAAC
CTTAGGACACGCTGAGCTATTTTCAATTTCTGATTTTTCAATGTATAG
Found at i:6237356 original size:24 final size:25
Alignment explanation
Indices: 6237315--6237370 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
6237305 ATTATTACTA
*
6237315 ATTATTATTATTGCTAGTAT-TGTT
1 ATTATTATTAATGCTAGTATATGTT
*
6237339 ATTATTATTAAT-CTTAGTGTATGTT
1 ATTATTATTAATGC-TAGTATATGTT
6237364 -TTATTAT
1 ATTATTAT
6237371 ATGTATGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 1 0.04
24 23 0.82
25 4 0.14
ACGTcount: A:0.27, C:0.04, G:0.11, T:0.59
Consensus pattern (25 bp):
ATTATTATTAATGCTAGTATATGTT
Found at i:6237426 original size:25 final size:25
Alignment explanation
Indices: 6237397--6237490 Score: 75
Period size: 25 Copynumber: 3.6 Consensus size: 25
6237387 TTTTATATAC
*
6237397 AATATTATTTTAATTACT-TTATTCT
1 AATATTATTTT-ATTACTATTATTAT
* *
6237422 AATATTATATTATTATTATTATTAT
1 AATATTATTTTATTACTATTATTAT
*
6237447 ATTATTATTATTATTA-TATTTAGTTAT
1 AATATTATT-TTATTACTA-TTA-TTAT
6237474 ATATATGTATATTTATT
1 A-ATAT-TAT-TTTATT
6237491 TTAAATGTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
24 5 0.09
25 25 0.45
26 9 0.16
27 5 0.09
28 3 0.05
29 8 0.14
30 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (25 bp):
AATATTATTTTATTACTATTATTAT
Found at i:6237437 original size:3 final size:3
Alignment explanation
Indices: 6237424--6237463 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
6237414 TTTATTCTAA
6237424 TAT TA- TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6237464 ATTTAGTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 4 0.11
3 31 0.89
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:6237446 original size:17 final size:17
Alignment explanation
Indices: 6237424--6237466 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
6237414 TTTATTCTAA
6237424 TATTATATTATTATTAT
1 TATTATATTATTATTAT
6237441 TATTATATTATTATTAT
1 TATTATATTATTATTAT
6237458 TATTATATT
1 TATTATATT
6237467 TAGTTATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TATTATATTATTATTAT
Found at i:6237466 original size:14 final size:14
Alignment explanation
Indices: 6237432--6237460 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
6237422 AATATTATAT
6237432 TATTATTATTATTA
1 TATTATTATTATTA
6237446 TATTATTATTATTA
1 TATTATTATTATTA
6237460 T
1 T
6237461 TATATTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TATTATTATTATTA
Done.