Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 226 of 427
Found at i:63670812 original size:28 final size:28
Alignment explanation
Indices: 63670743--63670821 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
63670733 GAATCATTCC
* *
63670743 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
63670771 ATATCTCGCGCACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* * *
63670799 ATATTTCGTACACTGAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
63670822 ATTTGATTGC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:63680171 original size:42 final size:42
Alignment explanation
Indices: 63680067--63680215 Score: 131
Period size: 43 Copynumber: 3.5 Consensus size: 42
63680057 CAATGCCAAC
* * * *
63680067 GTCCCAGACGTGGTCTTACATGTAATCAAATATCAATGCCACT
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCA-T
* * * *
63680110 GTCCCAGATAGGGTTTTACACGAAATCATATA-CGATGCCGAT
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCC-AT
* * *
63680152 GTCCCAGACATGGTCTTACACATAAATCACAA-ATTGATGCCAAC
1 GTCCCAGACATGGTCTTACAC-GAAATCA-AATATCGATGCC-AT
*
63680196 GTCCCAGACATAGTCTTACA
1 GTCCCAGACATGGTCTTACA
63680216 AGATAACACA
Statistics
Matches: 85, Mismatches: 17, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
42 25 0.29
43 33 0.39
44 27 0.32
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCAT
Found at i:63682030 original size:21 final size:22
Alignment explanation
Indices: 63681994--63682039 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
63681984 ATAATGCATC
*
63681994 CCACCCAAATCCAACCAGCACA
1 CCACCCAAATCCAACCAACACA
*
63682016 CCACCCATA-CCAACCAACACA
1 CCACCCAAATCCAACCAACACA
63682037 CCA
1 CCA
63682040 TGTGGGGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.41, C:0.52, G:0.02, T:0.04
Consensus pattern (22 bp):
CCACCCAAATCCAACCAACACA
Found at i:63685684 original size:40 final size:40
Alignment explanation
Indices: 63685599--63685749 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
63685589 AATTGAATGA
* * *
63685599 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
63685639 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
63685680 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
63685719 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
63685750 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:63685763 original size:40 final size:40
Alignment explanation
Indices: 63685636--63685765 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
63685626 ATGCTGGAAA
* * * *
63685636 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
63685676 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
63685716 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
63685756 TTATATCCGG
1 TTATATCCGG
63685766 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:63693700 original size:40 final size:40
Alignment explanation
Indices: 63693615--63693765 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
63693605 AATTGAATGA
* * *
63693615 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
63693655 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
63693696 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
63693735 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
63693766 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:63693779 original size:40 final size:40
Alignment explanation
Indices: 63693652--63693781 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
63693642 ATGCTGGAAA
* * * *
63693652 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
63693692 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
63693732 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
63693772 TTATATCCGG
1 TTATATCCGG
63693782 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:63696953 original size:50 final size:50
Alignment explanation
Indices: 63696850--63697282 Score: 331
Period size: 50 Copynumber: 8.6 Consensus size: 50
63696840 ATGGTACGCA
* * *
63696850 TAGTAGCCTGCACTTAGTACTACACA--TGAGCCTTAACAATTTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CC-TAACAATGTGATACACG
* * *
63696900 TAGTTGCCTACACTTAGTACTACACACGTGACCTAACCATGTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATGTGATACACG
* * * * * * *
63696950 TAGTAGCCTGTACATAGTACTACACACGTGATCGAAGCTATCGAGTATGCAC-
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAAT-GTG-ATACACG
* * * *
63697002 -AGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATATGCTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATGTGATACACG
* * * * * *
63697051 TAGTAGCCCGCAGTTAGTACTACACATGTGACCTAACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATGTGATACACG
* * * * * * *
63697101 TAATAGACTGCACTTAGTACTACACACATG-CTCAAAGCTATCGGGTATGCA--
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC-CTAA-CAAT-GTG-ATACACG
* * *** * *
63697152 TAGTAGCCTGCACTTAGTACTATAGATACGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATGTGATACACG
* * ** * *
63697202 TAGTATCCTGTACTTAGTACTACACAAATGACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATGTGATACACG
* *
63697252 TAGTAGCCTGCACGTAGTACTAGACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
63697283 TCAAAGCTAT
Statistics
Matches: 300, Mismatches: 69, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
48 6 0.02
49 3 0.01
50 210 0.70
51 65 0.22
52 7 0.02
53 9 0.03
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATGTGATACACG
Found at i:63697119 original size:151 final size:151
Alignment explanation
Indices: 63696851--63697294 Score: 586
Period size: 151 Copynumber: 2.9 Consensus size: 151
63696841 TGGTACGCAT
* * *
63696851 AGTAGCCTGCACTTAGTACTACACATGAG-CCTTAACAATTTGGTACATGTAGTTGCCTACACTT
1 AGTAGCCTGCACTTAGTACTACACATGAGACC-TAACAATATGGTACATGTAGTAGCCTGCACTT
* * *
63696915 AGTACTACACACGTGACCTAACCATGTGATACACGTAGTAGCCTGTACATAGTACTACACACGTG
65 AGTACTACACAAGTGACCTAACCATCTGATACACGTAGTAGCCTGCACATAGTACTACACACGTG
*
63696980 ATCGAAGCTATCGAGTATGCAC
130 ATCAAAGCTATCGAGTATGCAC
* * * *
63697002 AGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATATGCTACATGTAGTAGCCCGCAGTTA
1 AGTAGCCTGCACTTAGTACTACACATGAGACCTAACAATATGGTACATGTAGTAGCCTGCACTTA
* * * * * * *
63697067 GTACTACACATGTGACCTAACCATCTGATACATGTAATAGACTGCACTTAGTACTACACACATGC
66 GTACTACACAAGTGACCTAACCATCTGATACACGTAGTAGCCTGCACATAGTACTACACACGTGA
* *
63697132 TCAAAGCTATCGGGTATGCAT
131 TCAAAGCTATCGAGTATGCAC
* * * * * *
63697153 AGTAGCCTGCACTTAGTACTATAGAT-ACGACCTAACAATCTGGTACACGTAGTATCCTGTACTT
1 AGTAGCCTGCACTTAGTACTACACATGA-GACCTAACAATATGGTACATGTAGTAGCCTGCACTT
* * * *
63697217 AGTACTACACAAATGACCTAACCATTTGATACACGTAGTAGCCTGCACGTAGTACTAGACACGTG
65 AGTACTACACAAGTGACCTAACCATCTGATACACGTAGTAGCCTGCACATAGTACTACACACGTG
63697282 ATCAAAGCTATCG
130 ATCAAAGCTATCG
63697295 GTACGTAACT
Statistics
Matches: 252, Mismatches: 39, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
151 250 0.99
152 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (151 bp):
AGTAGCCTGCACTTAGTACTACACATGAGACCTAACAATATGGTACATGTAGTAGCCTGCACTTA
GTACTACACAAGTGACCTAACCATCTGATACACGTAGTAGCCTGCACATAGTACTACACACGTGA
TCAAAGCTATCGAGTATGCAC
Found at i:63711108 original size:73 final size:73
Alignment explanation
Indices: 63711016--63711165 Score: 246
Period size: 73 Copynumber: 2.1 Consensus size: 73
63711006 TATGGCCAGC
* * *
63711016 ACATAGGCTATTTTCCAAGCCTTTTTGTCACCCTTTACGTTCACACACACAAACATGGATCTAGA
1 ACATAGGCTATTTTCCAAGCCTTTTTGTCACCCTTTACATGCACACACACAAACATGGATCCAGA
63711081 AGCATTCA
66 AGCATTCA
* * *
63711089 ACATAGGCTATTTTTCAAGCCTTTTTGTCACTCTTTACATGCACACACACAAACATGGTTCCAGA
1 ACATAGGCTATTTTCCAAGCCTTTTTGTCACCCTTTACATGCACACACACAAACATGGATCCAGA
63711154 AGCATTCA
66 AGCATTCA
63711162 ACAT
1 ACAT
63711166 CCTTAATTAT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.31
Consensus pattern (73 bp):
ACATAGGCTATTTTCCAAGCCTTTTTGTCACCCTTTACATGCACACACACAAACATGGATCCAGA
AGCATTCA
Found at i:63712845 original size:50 final size:50
Alignment explanation
Indices: 63712767--63713413 Score: 584
Period size: 50 Copynumber: 12.8 Consensus size: 50
63712757 ACCGAAGCTC
* * * *
63712767 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * *
63712817 TCTGGTACACGTAGTAGCCTACAGTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * * * *
63712867 TCTGATGCACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* ** *
63712918 TCAGGTATGCATAGTAGCCTGCACTTAGTACTACACATG-CAGCCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTAACAA
* * * *
63712968 TCTTGTACACATAGTAGCCTGCACTTTGTACTGCACATGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * * * * *
63713018 TTTGATACACGTAGTAGCCTGCACTTAATATTACAAATGTGATCAAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * * *
63713069 T-TGGGTACGCTTAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
1 TCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * *
63713119 TCTGGTACACATAGTTGCCTACACTTAGTATTACACACGTGA-TTAAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CAA
* *
63713170 TC-GAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTG-GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * *
63713220 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * * *
63713270 TCCGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAAATA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACA-A
* * *
63713321 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
** * *
63713370 TCGTCTTAAACACATAGTAGCCTGCACATAGTACTATACATGTG
1 TC-TGGT--ACACATAGTAGCCTGCACTTAGTACTACACATGTG
63713414 TTCTCAGAAT
Statistics
Matches: 482, Mismatches: 100, Indels: 28
0.79 0.16 0.05
Matches are distributed among these distances:
49 4 0.01
50 292 0.61
51 154 0.32
52 32 0.07
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:63712964 original size:101 final size:99
Alignment explanation
Indices: 63712778--63713413 Score: 485
Period size: 101 Copynumber: 6.3 Consensus size: 99
63712768 CTGGTACGCA
* * * * * *
63712778 TAGTAGCCTGCACTTAGTACTACACATGCGACTTATCAATCTGGTACACGTAGTAGCCTACAGTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACATAGTAGCCTGCACTT
63712843 AGTACTACACACGTGA-CCTAACCATCTGATGCACG
66 AGTACTACACA--TGAGCCTAACCATCTGATGCACG
* * * * * * **
63712878 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGCTATCAGGTATGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATCTGGTACACATAGTAGCCTGCACT
* * *
63712943 TAGTACTACACATGCAGCCTAACAATCTTG-TACACA
65 TAGTACTACACATG-AGCCTAACCATC-TGATGCACG
* * * * * *
63712979 TAGTAGCCTGCACTTTGTACTGCACATGTGACCTAACCATTTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACATAGTAGCCTGCACTT
* * * * * * * * *
63713044 AATATTACAAATGTGATCAAAGCTAT-TG-GGTACG
66 AGTACTACACATGAG-CCTAA-CCATCTGATGCACG
* * * *
63713078 CTTAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACATAGTTGCCTACAC
1 --TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACATAGTAGCCTGCAC
* * * ** * *
63713143 TTAGTATTACACACGTGATTAAAGCTATC-GA-GTACG
64 TTAGTACTACACATGAGCCT-AA-CCATCTGATGCACG
* * *
63713179 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGATACACGTAGTAGCCTGCAC
1 --TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACATAGTAGCCTGCAC
* *
63713244 TTAGTACTACACACGTGA-CCTAACCATCCGATACACG
64 TTAGTACTACACA--TGAGCCTAACCATCTGATGCACG
* * * * * *
63713281 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAAATATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACA-ATCTGGTACACATAGTAGCCTGCACT
* * * * ** *
63713346 TAGTACTACACATGCGACCTAAAATCGTCTTAAACACA
65 TAGTACTACACATGAG-CCT--AACCATCTGATGCACG
* *
63713384 TAGTAGCCTGCACATAGTACTATACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
63713414 TTCTCAGAAT
Statistics
Matches: 426, Mismatches: 90, Indels: 37
0.77 0.16 0.07
Matches are distributed among these distances:
99 9 0.02
100 102 0.24
101 271 0.64
102 6 0.01
103 38 0.09
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACATAGTAGCCTGCACTT
AGTACTACACATGAGCCTAACCATCTGATGCACG
Found at i:63713033 original size:151 final size:151
Alignment explanation
Indices: 63712759--63713359 Score: 647
Period size: 151 Copynumber: 4.0 Consensus size: 151
63712749 CCCTTGTAAC
* * *
63712759 CGAAGCTCTCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTATCAATCTGGTA
1 CGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
* * * * *
63712824 CACGTAGTAGCCTACAGTTAGTACTACACACGTGACCTAACCATCTGATGCACGTAGTAGCCTAC
66 CACATAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGCCTGC
*
63712889 ACTTAGTACTACACACGTGAT
131 ACTTAGTACTACACATGTGAT
* * *
63712910 CGAAGCTATCAGGTATGCATAGTAGCCTGCACTTAGTACTACACATGC-AGCCTAACAATCTTGT
1 CGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCTAACAATCTGGT
* * * *
63712974 ACACATAGTAGCCTGCACTTTGTACTGCACATGTGACCTAACCATTTGATACACGTAGTAGCCTG
65 ACACATAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGCCTG
* * *
63713039 CACTTAATATTACAAATGTGAT
130 CACTTAGTACTACACATGTGAT
* * *
63713061 CAAAGCTAT-TGGGTACGCTTAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGT
1 CGAAGCTATCT-GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGT
* * * * * * *
63713125 ACACATAGTTGCCTACACTTAGTATTACACACGTGA-TTAAAGC-TATCGAGTACGCATAGTAGC
65 ACACATAGTAGCCTACACTTAGTACTACACACGTGACCT-AACCAT-TTGA-TACACGTAGTAGC
* *
63713188 CTGCACTTAGTACTACACATGCGAC
127 CTGCACTTAGTACTACACATGTGAT
* * * * * * * * * *
63713213 CTAA-CAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCCGATA
1 CGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
* * * ** * * * *
63713277 CACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-AAAAATATCGGGTACGCATAGTAGCCT
66 CACATAGTAGCCTACACTTAGTACTACACACGTGACCTAACCAT-T-TGATACACGTAGTAGCCT
63713341 GCACTTAGTACTACACATG
129 GCACTTAGTACTACACATG
63713360 CGACCTAAAA
Statistics
Matches: 379, Mismatches: 61, Indels: 20
0.82 0.13 0.04
Matches are distributed among these distances:
150 5 0.01
151 337 0.89
152 37 0.10
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (151 bp):
CGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
CACATAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGCCTGC
ACTTAGTACTACACATGTGAT
Found at i:63713279 original size:252 final size:252
Alignment explanation
Indices: 63712828--63713405 Score: 795
Period size: 252 Copynumber: 2.3 Consensus size: 252
63712818 CTGGTACACG
* * * * * *
63712828 TAGTAGCCTACAGTTAGTACTACACACGTGACCTAACCATCTGATGCACGTAGTAGCCTACACTT
1 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGATACACATAGTAGCCTACACTT
* *
63712893 AGTACTACACACGTGATCGAAGCTATCAGGTATGCATAGTAGCCTGCACTTAGTACTACACATGC
66 AGTACTACACACGTGATCAAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
* * * **
63712958 AGCCTAACAATCTTGTACACATAGTAGCCTGCACTTTGTACTGCACATGTGACCTAACCATTTGA
131 AGCCTAACAATCTTGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCCGA
* * ** * *
63713023 TACACGTAGTAGCCTGCACTTAATATTACAAATGTGATCAAAGCTATTGGGTACGCT
196 TACACGTAGTAGCCTGCACTTAATACTACAAACGTGATCAAAAATATCGGGTACGCA
* *
63713080 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACATAGTTGCCTACACTT
1 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGATACACATAGTAGCCTACACTT
* *
63713145 AGTATTACACACGTGATTAAAGCTATC-GAGTACGCATAGTAGCCTGCACTTAGTACTACACATG
66 AGTACTACACACGTGATCAAAGCTATCAG-GTACGCATAGTAGCCTGCACTTAGTACTACACATG
*
63713209 C-GACCTAACAATC-TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
130 CAG-CCTAACAATCTTG-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
* *
63713272 CGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAAATATCGGGTACGCA
193 CGATACACGTAGTAGCCTGCACTTAATACTACAAACGTGATCAAAAATATCGGGTACGCA
* * * *
63713332 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-AATCGTCTTAAACACATAGTAGCCTGCA
1 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA---TCTGATACACATAGTAGCCTACA
*
63713396 CATAGTACTA
63 CTTAGTACTA
63713406 TACATGTGTT
Statistics
Matches: 286, Mismatches: 34, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
251 6 0.02
252 254 0.89
254 26 0.09
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (252 bp):
TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGATACACATAGTAGCCTACACTT
AGTACTACACACGTGATCAAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
AGCCTAACAATCTTGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCCGA
TACACGTAGTAGCCTGCACTTAATACTACAAACGTGATCAAAAATATCGGGTACGCA
Found at i:63717842 original size:119 final size:120
Alignment explanation
Indices: 63717619--63717843 Score: 314
Period size: 119 Copynumber: 1.9 Consensus size: 120
63717609 TCGAATGATG
* * *
63717619 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
* *
63717684 GTGTGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
66 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* **
63717739 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGCAT
*
63717801 TTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTG
64 TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTG
63717844 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
118 1 0.01
119 73 0.78
120 19 0.20
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:63717857 original size:40 final size:39
Alignment explanation
Indices: 63717620--63717843 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 39
63717610 CGAATGATGT
* * *
63717620 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
63717660 CCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63717699 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
63717740 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63717778 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63717819 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63717844 AACGAGTAGC
Statistics
Matches: 158, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
39 36 0.23
40 113 0.72
41 9 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63717865 original size:79 final size:79
Alignment explanation
Indices: 63717619--63717876 Score: 310
Period size: 79 Copynumber: 3.3 Consensus size: 79
63717609 TCGAATGATG
* * * *
63717619 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCAT
*
63717682 TTGTGTGAGTTACTAAA
64 TTGTGCGAG-TACTAAA
63717699 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATT
*
63717762 GGTGCGAGTCACTAAA
65 TGTGCGAGT-ACTAAA
* *
63717778 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
** *
63717843 GAACGAGTAGCTATA
66 GTGCGAGTA-CTAAA
* *
63717858 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
63717877 TACGTGATTT
Statistics
Matches: 157, Mismatches: 14, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 86 0.55
80 63 0.40
81 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTACTAAA
Found at i:63721274 original size:40 final size:40
Alignment explanation
Indices: 63721189--63721339 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
63721179 AATTGAATGA
* * *
63721189 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
63721229 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
63721270 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
63721309 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
63721340 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:63721353 original size:40 final size:40
Alignment explanation
Indices: 63721226--63721355 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
63721216 ATGCTGGAAA
* * * *
63721226 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
63721266 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
63721306 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
63721346 TTATATCCGG
1 TTATATCCGG
63721356 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:63729278 original size:40 final size:40
Alignment explanation
Indices: 63729193--63729343 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
63729183 AATTGAATGA
* * *
63729193 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
63729233 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
63729274 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
63729313 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
63729344 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:63729357 original size:40 final size:40
Alignment explanation
Indices: 63729230--63729359 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
63729220 ATGCTGGAAA
* * * *
63729230 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
63729270 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
63729310 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
63729350 TTATATCCGG
1 TTATATCCGG
63729360 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:63732858 original size:28 final size:29
Alignment explanation
Indices: 63732816--63732902 Score: 115
Period size: 29 Copynumber: 3.0 Consensus size: 29
63732806 AAGTCTACAT
* *
63732816 ACATGCATATAGCCCATTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
63732844 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
63732873 ACATTCATATGGCCCATCTA-GCCCGAATC
1 ACATTCATATGGCCCAT-TAGGCCCAAATC
63732902 A
1 A
63732903 ATTGCAAGCC
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
28 21 0.40
29 29 0.56
30 2 0.04
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:63736675 original size:21 final size:22
Alignment explanation
Indices: 63736632--63736677 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
63736622 ATAATGCATC
*
63736632 CCACCCAAATCCAGCCAACACA
1 CCACCCAAATCCAACCAACACA
* *
63736654 CCACCCATA-CCAACCAATACA
1 CCACCCAAATCCAACCAACACA
63736675 CCA
1 CCA
63736678 TGTAGGGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.41, C:0.50, G:0.02, T:0.07
Consensus pattern (22 bp):
CCACCCAAATCCAACCAACACA
Found at i:63741421 original size:42 final size:41
Alignment explanation
Indices: 63741327--63741488 Score: 130
Period size: 43 Copynumber: 3.8 Consensus size: 41
63741317 TAATGCCAAC
* * *** *
63741327 GTCCCAGACATGGTCTTATATGTAATCAAATATCGATGCCACT
1 GTCCCAGACAGGGTCTTACACAAAATCAAATA-CGATG-CAAT
* * *
63741370 GTCCTAGACAGGGTCTTACACAAAGTCAAATACGATGTCGAT
1 GTCCCAGACAGGGTCTTACACAAAATCAAATACGATG-CAAT
* *
63741412 GTCCCAGACATGGTCTTACACATAAATCTCAAAT-CGATGCCAAC
1 GTCCCAGACAGGGTCTTACACA-AAA--TCAAATACGATG-CAAT
*
63741456 GTCCCAGAC-GTGGTCTTACACAAAATCACATAC
1 GTCCCAGACAG-GGTCTTACACAAAATCAAATAC
63741489 CGAAATCCTA
Statistics
Matches: 96, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
41 5 0.05
42 28 0.29
43 30 0.31
44 27 0.28
45 6 0.06
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (41 bp):
GTCCCAGACAGGGTCTTACACAAAATCAAATACGATGCAAT
Found at i:63741474 original size:86 final size:85
Alignment explanation
Indices: 63741327--63741488 Score: 204
Period size: 86 Copynumber: 1.9 Consensus size: 85
63741317 TAATGCCAAC
* ** *
63741327 GTCCCAGACATGGTCTTATATGTAATCAAATATCGATGCCACTGTCCTAGACAGGGTCTTACACA
1 GTCCCAGACATGGTCTTACACATAATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACA
*
63741392 AAGTCAAATACGATGTCGAT
66 AAATCAAATACGATGTCGAT
*
63741412 GTCCCAGACATGGTCTTACACATAAATCTCAA-ATCGATGCCAAC-GTCCCAGAC-GTGGTCTTA
1 GTCCCAGACATGGTCTTACACAT-AATC-AAATATCGATGCC-ACTGTCCCAGACAG-GGTCTTA
*
63741474 CACAAAATCACATAC
62 CACAAAATCAAATAC
63741489 CGAAATCCTA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 21 0.32
86 41 0.62
87 4 0.06
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACACATAATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACA
AAATCAAATACGATGTCGAT
Found at i:63742886 original size:17 final size:15
Alignment explanation
Indices: 63742849--63742880 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
63742839 ACATGGAAAG
*
63742849 TAAAATGAAGTAAGC
1 TAAAATGAAGTAAAC
63742864 TAAAATGAAGTAAAC
1 TAAAATGAAGTAAAC
63742879 TA
1 TA
63742881 TAAAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.16, T:0.22
Consensus pattern (15 bp):
TAAAATGAAGTAAAC
Found at i:63756112 original size:19 final size:19
Alignment explanation
Indices: 63756088--63756125 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
63756078 AAATAGCTAG
63756088 ATCAAGCTACAACAACCTT
1 ATCAAGCTACAACAACCTT
63756107 ATCAAGCTACAACAACCTT
1 ATCAAGCTACAACAACCTT
63756126 CCAAGATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.32, G:0.05, T:0.21
Consensus pattern (19 bp):
ATCAAGCTACAACAACCTT
Found at i:63759532 original size:27 final size:26
Alignment explanation
Indices: 63759487--63759600 Score: 77
Period size: 27 Copynumber: 4.2 Consensus size: 26
63759477 CCCTGTTTAG
* *
63759487 AATACTTTAGTTTACTAAAATTACCAA
1 AATACCTTAGTTT-GTAAAATTACCAA
* **
63759514 AATACGCTTAGTTTGTAAAAATACTGA
1 AATAC-CTTAGTTTGTAAAATTACCAA
* * **
63759541 AATACCCTCGATTTGTAAAATTACTGA
1 AATACCTTAG-TTTGTAAAATTACCAA
*
63759568 AATACCTTCTA-CTTGTAAAATTACCAA
1 AATACC-T-TAGTTTGTAAAATTACCAA
*
63759595 AGTACC
1 AATACC
63759601 CCCGATTTAC
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
26 3 0.04
27 58 0.84
28 7 0.10
29 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (26 bp):
AATACCTTAGTTTGTAAAATTACCAA
Found at i:63759616 original size:27 final size:27
Alignment explanation
Indices: 63759597--63759691 Score: 172
Period size: 27 Copynumber: 3.5 Consensus size: 27
63759587 ATTACCAAAG
*
63759597 TACCCCCGATTTACAGAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
63759624 TACCCCCGATTTACATAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
63759651 TACCCCCGATTTACATAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
*
63759678 TACCCCCGTTTTAC
1 TACCCCCGATTTAC
63759692 CCTCGACTTA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.27, C:0.32, G:0.05, T:0.36
Consensus pattern (27 bp):
TACCCCCGATTTACATAATTACCATTT
Found at i:63759644 original size:54 final size:54
Alignment explanation
Indices: 63759586--63759691 Score: 167
Period size: 54 Copynumber: 2.0 Consensus size: 54
63759576 CTACTTGTAA
63759586 AATTACCAAAGTACCCCCGATTTACAGAATTACCATTTTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAGAATTACCATTTTACCCCCGATTTACAT
*** * *
63759640 AATTACCATTTTACCCCCGATTTACATAATTACCATTTTACCCCCGTTTTAC
1 AATTACCAAAGTACCCCCGATTTACAGAATTACCATTTTACCCCCGATTTAC
63759692 CCTCGACTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.30, C:0.30, G:0.06, T:0.34
Consensus pattern (54 bp):
AATTACCAAAGTACCCCCGATTTACAGAATTACCATTTTACCCCCGATTTACAT
Found at i:63759664 original size:38 final size:38
Alignment explanation
Indices: 63759649--63759729 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
63759639 TAATTACCAT
* * *
63759649 TTTACCCCCGATTTACATAATTACCATTTTACCCCCGT
1 TTTACCCCCGACTTACAGAATTACCATTTTACCCCCGA
* * * *
63759687 TTTACCCTCGACTTACAGAATTATCGTTTTACCCTCGA
1 TTTACCCCCGACTTACAGAATTACCATTTTACCCCCGA
63759725 TTTAC
1 TTTAC
63759730 AGAATTATTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.23, C:0.31, G:0.07, T:0.38
Consensus pattern (38 bp):
TTTACCCCCGACTTACAGAATTACCATTTTACCCCCGA
Found at i:63759820 original size:27 final size:27
Alignment explanation
Indices: 63759686--63759821 Score: 157
Period size: 27 Copynumber: 5.0 Consensus size: 27
63759676 TTTACCCCCG
* *
63759686 TTTTACCCTCGACTTACAGAATTA-TCG
1 TTTTACCCTCGATTTACAGAATTACT-A
* *
63759713 TTTTACCCTCGATTTACAGAATTATTTT
1 TTTTACCCTCGATTTACAGAATTA-CTA
* * * *
63759741 TTTTACCATTGATTTATAGAATTACTG
1 TTTTACCCTCGATTTACAGAATTACTA
*
63759768 TTTTACCCTTGATTTACAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
*
63759795 TTTTACCCTCGATTTACAAAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
63759822 AAATAGCCTT
Statistics
Matches: 95, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
27 73 0.77
28 21 0.22
29 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAGAATTACTA
Found at i:63759842 original size:27 final size:27
Alignment explanation
Indices: 63759812--63760050 Score: 192
Period size: 27 Copynumber: 8.8 Consensus size: 27
63759802 CTCGATTTAC
* *
63759812 AAAATTACTAAAATAGCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
63759839 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
63759866 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * ***
63759893 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * **
63759920 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* * * *
63759947 AAAGTTACAAAAATACCCTTGACTTTCT
1 AAAATTACCAAAATACCCTTG-GTTTGT
* * **
63759975 AAAAATTA-TAGAAATACCATTGGTTTAC
1 -AAAATTACCA-AAATACCCTTGGTTTGT
* * *
63760003 AAAATTACTAAAATACCTTTGGCTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
** * *
63760030 TGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
63760051 TAGGATGAAA
Statistics
Matches: 168, Mismatches: 40, Indels: 8
0.78 0.19 0.04
Matches are distributed among these distances:
27 143 0.85
28 9 0.05
29 16 0.10
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:63759965 original size:54 final size:53
Alignment explanation
Indices: 63759771--63760019 Score: 180
Period size: 54 Copynumber: 4.6 Consensus size: 53
63759761 ATTACTGTTT
* * *** * ** *
63759771 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACA-AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
* *
63759825 TAGCCTTGGTTTGTA-AAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTTGG-TT-TACAAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAA
** *
63759879 TACCCTTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTT-ACAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
* * * * * * *
63759933 TACCCCTGATTTACAAAGTTACAAAAATACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTGGTTTACAAA-TTACCAAAATACCC-TCAATTTGT-AAAATTACCA-AAA
* *
63759989 TACCATTGGTTTACAAAATTACTAAAATACC
1 TACCCTTGGTTTAC-AAATTACCAAAATACC
63760020 TTTGGCTTGT
Statistics
Matches: 155, Mismatches: 29, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
52 1 0.01
53 6 0.04
54 99 0.64
55 11 0.07
56 35 0.23
57 3 0.02
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (53 bp):
TACCCTTGGTTTACAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
Found at i:63760111 original size:27 final size:27
Alignment explanation
Indices: 63760068--63760141 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
63760058 AAATGACTAA
*
63760068 AATACCCCTATTA-GGTAAAAAGATCGT
1 AATACCCCT-GTAGGGTAAAAAGATCGT
**
63760095 AA-AGCCCCTGTAGGGTAAAGTGATCGT
1 AATA-CCCCTGTAGGGTAAAAAGATCGT
*
63760122 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
63760142 TGACGAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 3 0.08
27 35 0.90
28 1 0.03
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGATCGT
Found at i:63761873 original size:29 final size:28
Alignment explanation
Indices: 63761803--63761877 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
63761793 ATACTCGATT
* *
63761803 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
63761831 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
63761860 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
63761878 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:63761894 original size:29 final size:29
Alignment explanation
Indices: 63761861--63761934 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
63761851 CCTTCGAGCT
63761861 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
63761890 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63761919 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
63761935 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:63769747 original size:29 final size:28
Alignment explanation
Indices: 63769677--63769751 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
63769667 ATACTCGATT
* *
63769677 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
63769705 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
63769734 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
63769752 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:63769768 original size:29 final size:29
Alignment explanation
Indices: 63769735--63769808 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
63769725 CCTTCGAGCT
63769735 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
63769764 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63769793 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
63769809 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:63772287 original size:25 final size:25
Alignment explanation
Indices: 63772258--63772305 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63772248 TTATAACATG
* * *
63772258 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
63772283 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
63772306 GTTTATGCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:63772372 original size:20 final size:20
Alignment explanation
Indices: 63772349--63772432 Score: 150
Period size: 20 Copynumber: 4.2 Consensus size: 20
63772339 TAAACATGGT
63772349 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
63772369 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
63772389 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
63772409 ATGTATGATATGCACATGAG
1 ATGTATGATATGCACATGAC
63772429 ATGT
1 ATGT
63772433 TCATAAATGT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:63772389 original size:11 final size:11
Alignment explanation
Indices: 63772353--63772427 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
63772343 CATGGTATGT
63772353 ATGATATGCAC
1 ATGATATGCAC
* *
63772364 ATGACATG--T
1 ATGATATGCAC
63772373 ATGATATGCAC
1 ATGATATGCAC
*
63772384 ATGATATG--T
1 ATGATATGCAC
63772393 ATGATATGCAC
1 ATGATATGCAC
* *
63772404 ATGACATG--T
1 ATGATATGCAC
63772413 ATGATATGCAC
1 ATGATATGCAC
63772424 ATGA
1 ATGA
63772428 GATGTTCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:63772558 original size:25 final size:24
Alignment explanation
Indices: 63772479--63772672 Score: 243
Period size: 25 Copynumber: 8.0 Consensus size: 24
63772469 AGGAAGTGCA
63772479 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
* *
63772502 AAAGGGCTTATGCCCTAATTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
63772525 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
63772550 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
63772575 GAAGGGCTTATGCCCCAGTTGTGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
63772600 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
63772624 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
63772648 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
63772673 GATAAAGCAG
Statistics
Matches: 153, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
23 41 0.27
24 31 0.20
25 81 0.53
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:63772899 original size:31 final size:31
Alignment explanation
Indices: 63772864--63772927 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
63772854 CGTTTACAGT
* *
63772864 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
**
63772895 AAAGGCTTCAGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
63772926 AA
1 AA
63772928 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:63780678 original size:14 final size:16
Alignment explanation
Indices: 63780659--63780702 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
63780649 GGCAATCCAT
63780659 ATTTATTT-ATTTT-A
1 ATTTATTTAATTTTGA
63780673 ATTTATTTAATTTTGA
1 ATTTATTTAATTTTGA
*
63780689 ATTAAGTTTAATTT
1 ATTTA-TTTAATTT
63780703 ATGTTGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 8 0.31
15 5 0.19
16 5 0.19
17 8 0.31
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (16 bp):
ATTTATTTAATTTTGA
Found at i:63782986 original size:30 final size:30
Alignment explanation
Indices: 63782950--63783008 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
63782940 ATTAAGTAAA
63782950 CTAGGAATTCTTTTAGACTGAATTCTGAAT
1 CTAGGAATTCTTTTAGACTGAATTCTGAAT
63782980 CTAGGAATTCTTTTAGACTGAATTCTGAA
1 CTAGGAATTCTTTTAGACTGAATTCTGAA
63783009 ATAAATATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.39
Consensus pattern (30 bp):
CTAGGAATTCTTTTAGACTGAATTCTGAAT
Found at i:63787626 original size:14 final size:15
Alignment explanation
Indices: 63787609--63787637 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63787599 TTTTGAAAAG
63787609 TATTTTTGAA-GTGT
1 TATTTTTGAATGTGT
63787623 TATTTTTGAATGTGT
1 TATTTTTGAATGTGT
63787638 GGTCTGCCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (15 bp):
TATTTTTGAATGTGT
Found at i:63795568 original size:40 final size:40
Alignment explanation
Indices: 63795523--63795689 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
63795513 CGGAATATAA
*
63795523 CCGGATATAATCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * * *
63795563 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** ** *
63795603 CCGGATATAGCCACTAGCACATTTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63795643 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63795682 CCGGATAT
1 CCGGATAT
63795690 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 13 0.12
40 90 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63806417 original size:20 final size:20
Alignment explanation
Indices: 63806392--63806429 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
63806382 GTTTATTCGC
*
63806392 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
63806412 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
63806430 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:63812870 original size:49 final size:49
Alignment explanation
Indices: 63812801--63813098 Score: 510
Period size: 49 Copynumber: 6.1 Consensus size: 49
63812791 GTACATAATA
* * *
63812801 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTGAAAATGTAT
* *
63812850 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTGAAAATGTAT
63812899 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTGAAAA--TAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTGAAAATGTAT
*
63812946 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTGAAAATATAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTGAAAATGTAT
63812995 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTGAAAATGTAT
* *
63813044 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTGAAAATGTAT
63813093 ATATAT
1 ATATAT
63813099 ATGTGGTAAA
Statistics
Matches: 241, Mismatches: 6, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
47 47 0.20
49 194 0.80
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.29
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTGAAAATGTAT
Found at i:63812968 original size:145 final size:145
Alignment explanation
Indices: 63812797--63813096 Score: 512
Period size: 145 Copynumber: 2.1 Consensus size: 145
63812787 GTCTGTACAT
* * *
63812797 AATA-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAAAATGTATATATATGTGAT
1 AATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTAAAAATATATATATATGTGAT
* *
63812861 AAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGA
66 AAGGCCTAATGGCCGACGTGATGAACGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGA
63812926 CGTGATGAACGTGAA
131 CGTGATGAACGTGAA
*
63812941 AATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTGAAAATATATATATATGTGAT
1 AATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTAAAAATATATATATATGTGAT
63813006 AAGGCCTAATGGCCGACGTGATGAACGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGA
66 AAGGCCTAATGGCCGACGTGATGAACGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGA
*
63813071 CGTGATGAATGTGAA
131 CGTGATGAACGTGAA
* *
63813086 AGTGTATATAT
1 AATATATATAT
63813097 ATATGTGGTA
Statistics
Matches: 146, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
144 4 0.03
145 142 0.97
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.28
Consensus pattern (145 bp):
AATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTAAAAATATATATATATGTGAT
AAGGCCTAATGGCCGACGTGATGAACGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGA
CGTGATGAACGTGAA
Found at i:63813222 original size:37 final size:36
Alignment explanation
Indices: 63813167--63813253 Score: 129
Period size: 37 Copynumber: 2.3 Consensus size: 36
63813157 AACTTGGAAA
* *
63813167 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCAATGACTACATGTGGAGAT
63813205 TATGTCCGGGTACGACCCAATGACTACATGTGGAGAT
1 TATGTCCGGGTA-GACCCAATGACTACATGTGGAGAT
63813242 TATGTCCGGGTA
1 TATGTCCGGGTA
63813254 AGACTTCGTA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.89
38 4 0.09
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCAATGACTACATGTGGAGAT
Found at i:63816819 original size:40 final size:40
Alignment explanation
Indices: 63816774--63817001 Score: 282
Period size: 40 Copynumber: 5.7 Consensus size: 40
63816764 GCCACTAGCT
* *
63816774 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
63816814 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
63816853 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
63816893 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * ** * *
63816933 CGAATGCCTTCGGGACTTAGCCCGG-AATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
63816973 CAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 CAAATGCCT-TCGGGACTTAGCCCGGTTAT
63817002 CATCCGAACA
Statistics
Matches: 168, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 39 0.23
40 128 0.76
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:63816894 original size:79 final size:80
Alignment explanation
Indices: 63816774--63816958 Score: 282
Period size: 79 Copynumber: 2.3 Consensus size: 80
63816764 GCCACTAGCT
* ** * *
63816774 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
63816839 -TATAATAACTCGCA
66 ATATAATAACTCGCA
*
63816853 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
63816918 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
63816933 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63816959 ATTAGCCACT
Statistics
Matches: 96, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 59 0.61
80 37 0.39
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:63816986 original size:80 final size:77
Alignment explanation
Indices: 63816774--63816998 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 77
63816764 GCCACTAGCT
* *
63816774 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTA-ACTTGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-AAT--TAGACTAGCACAAATGCCTTCGGGACTTAGCCCG
63816838 GTATAATAACTCGCA
63 GTATAATAACTCGCA
* *
63816853 CAAATGCCTTCGGGACTTAGCCCGGATATAATAG-CTCGCACAAACGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGA-AT--TAGACTAGCACAAATGCCTTCGGGACTTAGCCCG
* *
63816917 GATATAGTAGCTCGCA
63 G-TATAATAACTCGCA
* *
63816933 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAG--ACTAGCACAAATGCCT-TCGGGACTTAGCCCG
63816997 GT
63 GT
63816999 TATCATCCGA
Statistics
Matches: 128, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
77 3 0.02
79 63 0.49
80 62 0.48
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (77 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA
TAATAACTCGCA
Found at i:63822176 original size:26 final size:26
Alignment explanation
Indices: 63822140--63822247 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
63822130 TGAAATGCTC
*
63822140 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
63822166 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
63822192 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
63822218 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
63822244 ATCA
1 ATCA
63822248 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:63824662 original size:40 final size:40
Alignment explanation
Indices: 63824607--63824827 Score: 331
Period size: 40 Copynumber: 5.5 Consensus size: 40
63824597 TATTCGAATG
* *
63824607 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
63824647 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
63824687 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
63824727 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* *
63824767 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGATT
63824807 ATATCC-GGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
63824828 ATACTTGGGT
Statistics
Matches: 168, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 15 0.09
40 151 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:63832725 original size:24 final size:25
Alignment explanation
Indices: 63832692--63832738 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
63832682 AACTAACATC
*
63832692 ACATAGCTC-AAATATTCATCAATG
1 ACATAACTCAAAATATTCATCAATG
63832716 ACATAACTCAAAATATTCATCAA
1 ACATAACTCAAAATATTCATCAA
63832739 AATCAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.47, C:0.21, G:0.04, T:0.28
Consensus pattern (25 bp):
ACATAACTCAAAATATTCATCAATG
Found at i:63839088 original size:42 final size:41
Alignment explanation
Indices: 63839025--63839136 Score: 127
Period size: 43 Copynumber: 2.7 Consensus size: 41
63839015 TTACTGAGGC
*
63839025 TACATGTAAGACCATATCTGGGATATGTCATCAATATGAGACT
1 TACATGTAAGACCATATCTGGGATATGT-ATCAATACGAGA-T
* * * *
63839068 T-CGTGTAAGACCATAGCTGGGCTATTGGTATCGATACGAGAT
1 TACATGTAAGACCATATCTGGGATA-T-GTATCAATACGAGAT
*
63839110 TACATGTAAGACCATATCTGAGATATG
1 TACATGTAAGACCATATCTGGGATATG
63839137 GCATTGGTAA
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
41 1 0.02
42 23 0.40
43 31 0.54
44 2 0.04
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.29
Consensus pattern (41 bp):
TACATGTAAGACCATATCTGGGATATGTATCAATACGAGAT
Found at i:63841288 original size:14 final size:15
Alignment explanation
Indices: 63841269--63841304 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
63841259 TTCGAATGTC
63841269 CACACA-GCCTGTGA
1 CACACAGGCCTGTGA
63841283 CACACATGGCCTGTGA
1 CACACA-GGCCTGTGA
63841299 CACACA
1 CACACA
63841305 TAGCCAGGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
16 14 0.70
ACGTcount: A:0.31, C:0.36, G:0.19, T:0.14
Consensus pattern (15 bp):
CACACAGGCCTGTGA
Found at i:63841294 original size:16 final size:16
Alignment explanation
Indices: 63841275--63841305 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
63841265 TGTCCACACA
63841275 GCCTGTGACACACATG
1 GCCTGTGACACACATG
63841291 GCCTGTGACACACAT
1 GCCTGTGACACACAT
63841306 AGCCAGGCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.32, G:0.23, T:0.19
Consensus pattern (16 bp):
GCCTGTGACACACATG
Found at i:63844220 original size:15 final size:15
Alignment explanation
Indices: 63844202--63844271 Score: 52
Period size: 15 Copynumber: 4.7 Consensus size: 15
63844192 AACACTTATC
*
63844202 CTATTAGACACATCA
1 CTATCAGACACATCA
63844217 CTATCAGACACATCA
1 CTATCAGACACATCA
* ** * *
63844232 TTAAT-AGGGAGATAA
1 CT-ATCAGACACATCA
63844247 CTATCAGACACATCA
1 CTATCAGACACATCA
**
63844262 AAATCAGACA
1 CTATCAGACA
63844272 TTTCTTCTTC
Statistics
Matches: 40, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
14 2 0.05
15 36 0.90
16 2 0.05
ACGTcount: A:0.44, C:0.23, G:0.11, T:0.21
Consensus pattern (15 bp):
CTATCAGACACATCA
Found at i:63854900 original size:5 final size:6
Alignment explanation
Indices: 63854887--63854939 Score: 79
Period size: 6 Copynumber: 8.5 Consensus size: 6
63854877 ATAATTTAAT
*
63854887 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAATAA
63854937 AAA
1 AAA
63854940 ATATATAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 38 0.88
8 5 0.12
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:63854973 original size:9 final size:9
Alignment explanation
Indices: 63854959--63855054 Score: 59
Period size: 9 Copynumber: 10.7 Consensus size: 9
63854949 TTTATACAAA
*
63854959 TAATTTGAT
1 TAATTTGGT
63854968 TAATTTGGT
1 TAATTTGGT
*
63854977 TAATTCGGT
1 TAATTTGGT
*
63854986 TAATTTGGG
1 TAATTTGGT
*
63854995 TAATTCAGG-
1 TAATT-TGGT
* *
63855004 TAATTCGGG
1 TAATTTGGT
*
63855013 TAATTCGGT
1 TAATTTGGT
* *
63855022 TAATTCGAT
1 TAATTTGGT
* *
63855031 TGATTCGGT
1 TAATTTGGT
**
63855040 TAATTCAGT
1 TAATTTGGT
63855049 TAATTT
1 TAATTT
63855055 TATACTTATT
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
8 2 0.03
9 68 0.94
10 2 0.03
ACGTcount: A:0.26, C:0.07, G:0.21, T:0.46
Consensus pattern (9 bp):
TAATTTGGT
Found at i:63854988 original size:18 final size:18
Alignment explanation
Indices: 63854967--63855045 Score: 88
Period size: 18 Copynumber: 4.4 Consensus size: 18
63854957 AATAATTTGA
* *
63854967 TTAATTTGGTTAATTCGG
1 TTAATTCGGGTAATTCGG
*
63854985 TTAATTTGGGTAATTCAGG
1 TTAATTCGGGTAATTC-GG
63855004 -TAATTCGGGTAATTCGG
1 TTAATTCGGGTAATTCGG
** *
63855021 TTAATTCGATTGATTCGG
1 TTAATTCGGGTAATTCGG
63855039 TTAATTC
1 TTAATTC
63855046 AGTTAATTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
17 2 0.04
18 50 0.93
19 2 0.04
ACGTcount: A:0.24, C:0.09, G:0.23, T:0.44
Consensus pattern (18 bp):
TTAATTCGGGTAATTCGG
Found at i:63854998 original size:27 final size:27
Alignment explanation
Indices: 63854959--63855053 Score: 84
Period size: 27 Copynumber: 3.5 Consensus size: 27
63854949 TTTATACAAA
* *
63854959 TAATTTGATTAATTTGGTTAATTCGGT
1 TAATTTGGTTAATTAGGTTAATTCGGT
* *
63854986 TAATTTGGGTAATTCAGG-TAATTCGGG
1 TAATTTGGTTAATT-AGGTTAATTCGGT
* * * *
63855013 TAATTCGGTTAATTCGATTGATTCGGT
1 TAATTTGGTTAATTAGGTTAATTCGGT
**
63855040 TAATTCAGTTAATT
1 TAATTTGGTTAATT
63855054 TTATACTTAT
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
26 1 0.02
27 52 0.95
28 2 0.04
ACGTcount: A:0.26, C:0.07, G:0.21, T:0.45
Consensus pattern (27 bp):
TAATTTGGTTAATTAGGTTAATTCGGT
Found at i:63855324 original size:5 final size:5
Alignment explanation
Indices: 63855316--63855349 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
63855306 AAATAAAAAA
63855316 TTATT TTATT TTATT TTATT TTATT TTATT TTAT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTAT
63855350 GGTTGGTATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:63861205 original size:23 final size:24
Alignment explanation
Indices: 63861178--63861222 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
63861168 CAAATTATTA
*
63861178 ATTTGAATTTTA-AGTTCGAATTG
1 ATTTGAATTTTACAATTCGAATTG
63861201 ATTTGAATTTTACAATTCGAAT
1 ATTTGAATTTTACAATTCGAAT
63861223 AACAGATTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (24 bp):
ATTTGAATTTTACAATTCGAATTG
Found at i:63861352 original size:20 final size:19
Alignment explanation
Indices: 63861301--63861352 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
63861291 AAAAATTACA
*
63861301 AAAAATTCAAAATATTTTT
1 AAAAATTCAAAATATTTAT
* *
63861320 TAAACTTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
63861339 AAAAATTCCAAAAT
1 AAAAATT-CAAAAT
63861353 TGATTTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 21 0.78
20 6 0.22
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:63862538 original size:16 final size:16
Alignment explanation
Indices: 63862517--63862547 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
63862507 AGAAACGTCC
63862517 TTACCTAAGCTTACAA
1 TTACCTAAGCTTACAA
63862533 TTACCTAAGCTTACA
1 TTACCTAAGCTTACA
63862548 CCTATAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.32
Consensus pattern (16 bp):
TTACCTAAGCTTACAA
Found at i:63863048 original size:42 final size:42
Alignment explanation
Indices: 63862998--63863085 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
63862988 ATATTTCTAG
*
63862998 TGGATATTAAAATCATAAAGTATATTAAACTTCTTATAATAA
1 TGGATATTAAAATCATAAAGTACATTAAACTTCTTATAATAA
*
63863040 TGGATATTAAAATTATAAAGTACATTAAACTTCTTATAATAA
1 TGGATATTAAAATCATAAAGTACATTAAACTTCTTATAATAA
63863082 TGGA
1 TGGA
63863086 CATCTGCTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.38
Consensus pattern (42 bp):
TGGATATTAAAATCATAAAGTACATTAAACTTCTTATAATAA
Found at i:63863088 original size:24 final size:24
Alignment explanation
Indices: 63863021--63863088 Score: 67
Period size: 24 Copynumber: 3.1 Consensus size: 24
63863011 CATAAAGTAT
*
63863021 ATTAAACTTCTTATAATAATGGAT
1 ATTAAACTTCTTATAATAATGGAC
* *
63863045 ATTAAA---ATTAT-A-AA-GTAC
1 ATTAAACTTCTTATAATAATGGAC
63863063 ATTAAACTTCTTATAATAATGGAC
1 ATTAAACTTCTTATAATAATGGAC
63863087 AT
1 AT
63863089 CTGCTTAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 12
0.66 0.10 0.24
Matches are distributed among these distances:
18 8 0.24
19 2 0.06
20 1 0.03
21 8 0.24
22 1 0.03
23 2 0.06
24 11 0.33
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.38
Consensus pattern (24 bp):
ATTAAACTTCTTATAATAATGGAC
Found at i:63866664 original size:39 final size:39
Alignment explanation
Indices: 63866601--63866764 Score: 199
Period size: 39 Copynumber: 4.2 Consensus size: 39
63866591 GAATTTAAAC
* * * *
63866601 CCGG-TATAATACCAGCTCAAAGCCTGCGGGA-CTTTAG-
1 CCGGATATAATTCCAGCACATAGCCTGC-GGACCTTAAGT
* * *
63866638 CCTGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CC-GGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* *
63866678 CCGGATATAATTCCAGCATATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
63866717 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
63866756 CCGGATATA
1 CCGGATATA
63866765 CATCACTGAA
Statistics
Matches: 110, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
37 2 0.02
38 5 0.05
39 101 0.92
40 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:63868415 original size:22 final size:23
Alignment explanation
Indices: 63868390--63868454 Score: 80
Period size: 22 Copynumber: 2.9 Consensus size: 23
63868380 AAAAATAAGG
63868390 AAAATATAATAACAATAATAG-A
1 AAAATATAATAACAATAATAGTA
* * *
63868412 AAAATACAACAATAATAATAGTA
1 AAAATATAATAACAATAATAGTA
63868435 AAAGATATAATAAC-ATAATA
1 AAA-ATATAATAACAATAATA
63868455 ATATAATAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
22 18 0.51
23 10 0.29
24 7 0.20
ACGTcount: A:0.66, C:0.06, G:0.05, T:0.23
Consensus pattern (23 bp):
AAAATATAATAACAATAATAGTA
Found at i:63868536 original size:3 final size:3
Alignment explanation
Indices: 63868528--63868552 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
63868518 AAAGTAGTGC
63868528 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
63868553 GATGATCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:63868581 original size:36 final size:36
Alignment explanation
Indices: 63868530--63868622 Score: 109
Period size: 36 Copynumber: 2.5 Consensus size: 36
63868520 AGTAGTGCTA
*
63868530 ATAATAAT-AATAATAATAATAATGATGATCTATTA-
1 ATAATAATGAA-AATAATAATAATGATGATATATTAG
* *
63868565 AGTTATAATGAAAATAATGATAATGATGATATATTAG
1 A-TAATAATGAAAATAATAATAATGATGATATATTAG
63868602 ATAATAATAGTAAAATAATAA
1 ATAATAAT-G-AAAATAATAA
63868623 GTAACAATGA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
35 1 0.02
36 34 0.71
37 4 0.08
38 9 0.19
ACGTcount: A:0.55, C:0.01, G:0.10, T:0.34
Consensus pattern (36 bp):
ATAATAATGAAAATAATAATAATGATGATATATTAG
Found at i:63868668 original size:16 final size:16
Alignment explanation
Indices: 63868647--63868678 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63868637 TTATAATAAT
63868647 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
63868663 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
63868679 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:63868809 original size:15 final size:14
Alignment explanation
Indices: 63868782--63868822 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
63868772 ATACATATGA
*
63868782 AAAATAATGATAGT
1 AAAATAATAATAGT
63868796 AAAATATATAATAGT
1 AAAATA-ATAATAGT
63868811 AATAATAATAAT
1 AA-AATAATAAT
63868823 GGAATGAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 6 0.25
15 14 0.58
16 4 0.17
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (14 bp):
AAAATAATAATAGT
Found at i:63868925 original size:3 final size:3
Alignment explanation
Indices: 63868917--63868948 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
63868907 ACACTACCAT
63868917 ATA ATA ATA ATA ATA AT- ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
63868949 TAGAAATACA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:63868935 original size:17 final size:17
Alignment explanation
Indices: 63868915--63868948 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63868905 ACACACTACC
63868915 ATATAATAATAATAATA
1 ATATAATAATAATAATA
63868932 ATATAATAATAATAATA
1 ATATAATAATAATAATA
63868949 TAGAAATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
ATATAATAATAATAATA
Found at i:63868956 original size:14 final size:14
Alignment explanation
Indices: 63868920--63868950 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
63868910 CTACCATATA
63868920 ATAATAATAATAAT
1 ATAATAATAATAAT
63868934 ATAATAATAATAAT
1 ATAATAATAATAAT
63868948 ATA
1 ATA
63868951 GAAATACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATAATAATAAT
Found at i:63869058 original size:14 final size:16
Alignment explanation
Indices: 63869026--63869063 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
63869016 ATATATGTAC
63869026 ATAA-AATATACACTA
1 ATAATAATATACACTA
63869041 ATAATAATATA-A-TA
1 ATAATAATATACACTA
63869055 ATAATAATA
1 ATAATAATA
63869064 ATATTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 11 0.50
15 5 0.23
16 6 0.27
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAATAATATACACTA
Found at i:63869581 original size:27 final size:28
Alignment explanation
Indices: 63869518--63869597 Score: 99
Period size: 27 Copynumber: 2.8 Consensus size: 28
63869508 ATGATTTTTG
63869518 TTCTTGAATCTCAAAAAAAAAAGAAAAATCCC
1 TTCTTGAATCTC---AAAAAAA-AAAAATCCC
* *
63869550 CTCTTGAATCTCAAAAAAAAAAAA-CTC
1 TTCTTGAATCTCAAAAAAAAAAAATCCC
63869577 TTCTTGAATCTCAAAAAAAAA
1 TTCTTGAATCTCAAAAAAAAA
63869598 TTTCTTCTCT
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
27 22 0.49
28 5 0.11
29 7 0.16
32 11 0.24
ACGTcount: A:0.53, C:0.19, G:0.05, T:0.24
Consensus pattern (28 bp):
TTCTTGAATCTCAAAAAAAAAAAATCCC
Found at i:63869785 original size:1 final size:1
Alignment explanation
Indices: 63869779--63869822 Score: 61
Period size: 1 Copynumber: 44.0 Consensus size: 1
63869769 TGAGATTAGG
* * *
63869779 TTTTTTTCTTTTTTTTTTTTTCTTTTTTTTTTATTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
63869823 GGGTTGGGTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.02, C:0.05, G:0.00, T:0.93
Consensus pattern (1 bp):
T
Found at i:63869798 original size:14 final size:14
Alignment explanation
Indices: 63869779--63869822 Score: 72
Period size: 14 Copynumber: 3.1 Consensus size: 14
63869769 TGAGATTAGG
63869779 TTTTTTTCTTTTTT
1 TTTTTTTCTTTTTT
63869793 TTTTTTTCTTTTTT
1 TTTTTTTCTTTTTT
63869807 TTTTATTT-TTTTTT
1 TTTT-TTTCTTTTTT
63869821 TT
1 TT
63869823 GGGTTGGGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
14 26 0.90
15 3 0.10
ACGTcount: A:0.02, C:0.05, G:0.00, T:0.93
Consensus pattern (14 bp):
TTTTTTTCTTTTTT
Found at i:63870491 original size:205 final size:205
Alignment explanation
Indices: 63870125--63870914 Score: 1318
Period size: 205 Copynumber: 3.9 Consensus size: 205
63870115 CAGATTATTT
* * * * * * * * *
63870125 CTTCGATTTGATCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
** * * * * *
63870190 GCGAAAGCCAAATCAACTATG-ATTCGATTTGTTCCTTGTAAGCATAAGGATGCCAATCCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
63870254 GGATCCGTTTCAGCATAAACATCCGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
63870319 AGATGCCAAA
196 AGATGCCAAA
63870329 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
63870394 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
63870459 GGATCTGCTTCAGCGA-AATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
131 GGATCCGCTTCAGC-ATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
63870523 AAGATGCCAAA
195 AAGATGCCAAA
63870534 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
63870599 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
63870664 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
63870729 AGATGCCAAA
196 AGATGCCAAA
63870739 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
63870804 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * *
63870869 GGATCTGCTTCAG--TGAAATCGTCTGAAGGCGAGATCTGCTATGTGT
131 GGATCCGCTTCAGCAT-AAA-CATCTGAAGGTGAGATCTGCTATGTGT
63870915 GGCCTATTAC
Statistics
Matches: 556, Mismatches: 25, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
203 1 0.00
204 78 0.14
205 476 0.86
206 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (205 bp):
CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
AGATGCCAAA
Found at i:63878941 original size:15 final size:14
Alignment explanation
Indices: 63878899--63878948 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
63878889 ATAACTTTGA
*
63878899 ATGCAAATGATGTG
1 ATGCAAATGATGAG
63878913 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
63878928 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
63878942 ATGCAAA
1 ATGCAAA
63878949 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:63880612 original size:40 final size:39
Alignment explanation
Indices: 63880546--63880692 Score: 140
Period size: 39 Copynumber: 3.8 Consensus size: 39
63880536 AAATTGAATG
*
63880546 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAAATT
* * ****
63880585 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAAATT
* *
63880625 ATATCCGGGCTAAGACCCGAAGGC-ATTCG-TGCGAGTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCTG-GA-AATT
*
63880664 CTATCCGGGCTAAGACCCGAAGGC-ATTTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTTG
63880693 TGCACGTGAT
Statistics
Matches: 88, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
37 1 0.01
38 2 0.02
39 44 0.50
40 41 0.47
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGAAATT
Found at i:63880679 original size:39 final size:39
Alignment explanation
Indices: 63880584--63880711 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
63880574 TGCTGGAAAT
* * *
63880584 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
*
63880624 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-AT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
63880663 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
63880703 TATATCCGG
1 TATATCCGG
63880712 TTATATTCCG
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
38 1 0.01
39 34 0.44
40 43 0.55
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:63888697 original size:40 final size:40
Alignment explanation
Indices: 63888533--63888699 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
63888523 AAATTGAATG
* * * **
63888533 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* ** * **
63888572 ATATCCGGGTTAAGACCCGAAGGCAAATGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
63888612 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
63888652 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
63888692 ATATCCGG
1 ATATCCGG
63888700 TTATTTCCGA
Statistics
Matches: 103, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:63902688 original size:27 final size:26
Alignment explanation
Indices: 63902640--63902720 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
63902630 GCGAGGCTGC
*
63902640 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
63902667 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
63902693 CATATATATATGTGGCGAAGCCACCAGA
1 C--AGATAT-TGTGACGAAGCCACCAGA
63902721 TTGCAACGAG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.05
27 21 0.48
28 5 0.11
29 16 0.36
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63902800 original size:67 final size:69
Alignment explanation
Indices: 63902667--63902806 Score: 176
Period size: 67 Copynumber: 2.1 Consensus size: 69
63902657 TCACCAGATA
* * * * *
63902667 CAGATATTGTGGCTAGGCCACCAGAACATATATATATGTGGCGAAGCCACCAGATTGCAACGAGG
1 CAGATATTGTGACGAAGCCACCAGAACATATATATATGTCGCGAAGCCACCAAATTGCAACGAGG
*
63902732 CTGG
66 CTGC
* * **
63902736 CAGATATTGTGACGAAGTCACCAGAACA-A-ATATATGTCGCGAGGCCACCAAATTGCAGTGAGG
1 CAGATATTGTGACGAAGCCACCAGAACATATATATATGTCGCGAAGCCACCAAATTGCAACGAGG
63902799 CTGC
66 CTGC
63902803 CAGA
1 CAGA
63902807 ATGCTTCCTC
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
67 36 0.59
68 1 0.02
69 24 0.39
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.19
Consensus pattern (69 bp):
CAGATATTGTGACGAAGCCACCAGAACATATATATATGTCGCGAAGCCACCAAATTGCAACGAGG
CTGC
Found at i:63903452 original size:27 final size:27
Alignment explanation
Indices: 63903441--63903513 Score: 128
Period size: 27 Copynumber: 2.7 Consensus size: 27
63903431 ACCCCACAAA
*
63903441 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
63903468 GGTATTTCAATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
63903495 GGTATTTCGATAATTCTAC
1 GGTATTTCGATAATTCTAC
63903514 AACTTATCCA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTATTTCGATAATTCTACCCTACAGG
Found at i:63905970 original size:29 final size:28
Alignment explanation
Indices: 63905913--63905982 Score: 95
Period size: 29 Copynumber: 2.5 Consensus size: 28
63905903 TACCTGTATC
* *
63905913 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
63905941 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
*
63905970 TGGCCCGTTAGGC
1 TGGCCCATTAGGC
63905983 TTAGTCACGT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 14 0.38
29 23 0.62
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:63906088 original size:18 final size:19
Alignment explanation
Indices: 63906065--63906100 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
63906055 ATGGGCCCAA
63906065 TAGCCCA-TCTGGCCCATT
1 TAGCCCATTCTGGCCCATT
63906083 TAGCCCATTCTGGCCCAT
1 TAGCCCATTCTGGCCCAT
63906101 ATGGTCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.17, C:0.39, G:0.17, T:0.28
Consensus pattern (19 bp):
TAGCCCATTCTGGCCCATT
Found at i:63913091 original size:28 final size:28
Alignment explanation
Indices: 63913041--63913131 Score: 85
Period size: 28 Copynumber: 3.2 Consensus size: 28
63913031 TTCACATACC
* * * *
63913041 TGTATCTGGCCCATTAAGACCAATCATA
1 TGTATATGGCCCATTAGGCCCAATCACA
*
63913069 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCC-AATCACA
* *
63913098 TGTATATGGCCCGTTAGGCCCAGTCACA
1 TGTATATGGCCCATTAGGCCCAATCACA
*
63913126 TTTATA
1 TGTATA
63913132 ATCATGCTCA
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
27 1 0.02
28 26 0.51
29 23 0.45
30 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (28 bp):
TGTATATGGCCCATTAGGCCCAATCACA
Found at i:63913104 original size:29 final size:29
Alignment explanation
Indices: 63913038--63913119 Score: 87
Period size: 29 Copynumber: 2.9 Consensus size: 29
63913028 AATTTCACAT
* * *
63913038 ACCTGTATCTGGCCCATTAAGACC-AATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
**
63913066 ATAT-TCATATGGCCCATTAGGCCCAAATC
1 ACCTGT-ATATGGCCCATTAGGCCCAAATC
*
63913095 ACCTGTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAGGCCCA
63913120 GTCACATTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
27 1 0.02
28 17 0.40
29 24 0.56
30 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (29 bp):
ACCTGTATATGGCCCATTAGGCCCAAATC
Found at i:63913222 original size:18 final size:19
Alignment explanation
Indices: 63913199--63913234 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
63913189 ATGGGCCTAA
*
63913199 TAGCCCA-TCGGACCCATT
1 TAGCCCATTCCGACCCATT
63913217 TAGCCCATTCCGACCCAT
1 TAGCCCATTCCGACCCAT
63913235 ATGGCCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.22, C:0.42, G:0.14, T:0.22
Consensus pattern (19 bp):
TAGCCCATTCCGACCCATT
Found at i:63918341 original size:29 final size:29
Alignment explanation
Indices: 63918279--63918381 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
63918269 GTGACGAGAT
* * *
63918279 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
63918308 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
63918337 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
63918366 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63918382 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:63926284 original size:29 final size:27
Alignment explanation
Indices: 63926242--63926343 Score: 87
Period size: 29 Copynumber: 3.6 Consensus size: 27
63926232 TGACGAGATT
*
63926242 GGCACTGAGTGTGCGAGCTTGTAATGTAC
1 GGCACTAAGTGTGCGAGCTTG-AAT-TAC
* * *
63926271 GGCACTAAGTGTGCGAGTTTGGACTATAT
1 GGCACTAAGTGTGCGAGCTT-GAAT-TAC
* * *
63926300 GGCACTATGTGTGCGGGCTTGAATCAC
1 GGCACTAAGTGTGCGAGCTTGAATTAC
63926327 GTGGCACTAAGTGTGCG
1 --GGCACTAAGTGTGCG
63926344 TGATTGAGTA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 1 0.02
28 3 0.05
29 53 0.91
30 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.34, T:0.27
Consensus pattern (27 bp):
GGCACTAAGTGTGCGAGCTTGAATTAC
Found at i:63928686 original size:29 final size:28
Alignment explanation
Indices: 63928590--63928690 Score: 123
Period size: 28 Copynumber: 3.6 Consensus size: 28
63928580 TACTTGTATT
* * *
63928590 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTTATA
* **
63928618 TGGCCCATTAGGCCCAAATCTCCGTT-TA
1 TGGCCCATTAGGCCC-AATCACATTTATA
63928646 TGGCCCATTAGGCCCGAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTTATA
63928675 TGGCCCATTAGGCCCA
1 TGGCCCATTAGGCCCA
63928691 GCCACCTTTA
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
28 39 0.64
29 22 0.36
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTTATA
Found at i:63936124 original size:10 final size:10
Alignment explanation
Indices: 63936101--63936140 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 10
63936091 TTTTAAGTCT
63936101 ATTTTTGATCG
1 ATTTTTGAT-G
63936112 ATTTTTGATG
1 ATTTTTGATG
63936122 ATTTTT-ATG
1 ATTTTTGATG
63936131 -TTTTTG-TG
1 ATTTTTGATG
63936139 AT
1 AT
63936141 CGTTCCTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
8 7 0.26
9 4 0.15
10 7 0.26
11 9 0.33
ACGTcount: A:0.17, C:0.03, G:0.17, T:0.62
Consensus pattern (10 bp):
ATTTTTGATG
Found at i:63945354 original size:24 final size:24
Alignment explanation
Indices: 63945327--63945413 Score: 156
Period size: 24 Copynumber: 3.6 Consensus size: 24
63945317 CTTATTATGT
63945327 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
63945351 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
63945375 TCGTACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
63945399 TCGCACACATAGTGC
1 TCGCACACATAGTGC
63945414 ATTTGAGATT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:63945383 original size:48 final size:48
Alignment explanation
Indices: 63945305--63945413 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
63945295 ACCAAAAGTT
* **
63945305 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
*
63945353 GCACACATAGTGCTATAGTA-AATCGTACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
63945401 GCACACATAGTGC
1 GCACACATAGTGC
63945414 ATTTGAGATT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 52 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:63953098 original size:23 final size:24
Alignment explanation
Indices: 63953040--63953148 Score: 195
Period size: 23 Copynumber: 4.6 Consensus size: 24
63953030 CTTATTATGT
63953040 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
63953064 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
63953088 TCG-ACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
63953111 TCG-ACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
63953134 TCGCACACATAGTGC
1 TCGCACACATAGTGC
63953149 ATTTGAGATT
Statistics
Matches: 82, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
23 45 0.55
24 37 0.45
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:63963145 original size:47 final size:47
Alignment explanation
Indices: 63963086--63963526 Score: 702
Period size: 47 Copynumber: 9.4 Consensus size: 47
63963076 GATGTACAAG
* * *
63963086 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
63963133 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
63963180 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
63963227 GTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
63963274 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
63963321 GTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
63963368 GTGTATATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
63963415 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
63963462 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
63963509 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
63963527 TCCCGAAGGG
Statistics
Matches: 369, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 369 1.00
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:63968660 original size:42 final size:42
Alignment explanation
Indices: 63968598--63968788 Score: 145
Period size: 42 Copynumber: 4.6 Consensus size: 42
63968588 ACTGAGTGTA
* * * *
63968598 CGTGTAAGACCATATCTGGGATATGGGATCGATATGAGATTT
1 CGTGTAAGACCATATCTGGGATATAGCATCAATAAGAGATTT
* *
63968640 TGTGTAAGACCATATTTGGGATATAGCATCAATAAGAGATTT
1 CGTGTAAGACCATATCTGGGATATAGCATCAATAAGAGATTT
* * * * * * * *
63968682 CATGTAAGACCATAACTGAGTTATTGGCATCTATACGAGATTA
1 CGTGTAAGACCATATCTGGGATA-TAGCATCAATAAGAGATTT
* * * * * * *
63968725 CGTGT---ACCATAACTGAGTTATTGGCATCTATACGAGATTA
1 CGTGTAAGACCATATCTGGGATA-TAGCATCAATAAGAGATTT
*
63968765 CGTGTAAGACCATATCTCGGATAT
1 CGTGTAAGACCATATCTGGGATAT
63968789 GACATTGGTA
Statistics
Matches: 124, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
40 40 0.32
42 54 0.44
43 30 0.24
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATAGCATCAATAAGAGATTT
Found at i:63968740 original size:40 final size:40
Alignment explanation
Indices: 63968690--63968770 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
63968680 TTCATGTAAG
63968690 ACCATAACTGAGTTATTGGCATCTATACGAGATTACGTGT
1 ACCATAACTGAGTTATTGGCATCTATACGAGATTACGTGT
63968730 ACCATAACTGAGTTATTGGCATCTATACGAGATTACGTGT
1 ACCATAACTGAGTTATTGGCATCTATACGAGATTACGTGT
63968770 A
1 A
63968771 AGACCATATC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (40 bp):
ACCATAACTGAGTTATTGGCATCTATACGAGATTACGTGT
Found at i:63972972 original size:51 final size:51
Alignment explanation
Indices: 63972912--63973012 Score: 202
Period size: 51 Copynumber: 2.0 Consensus size: 51
63972902 CGAACAGATT
63972912 GGAATGTGTTTTAATACAAGAATGTGAAGTGATAGTTTATGCTTTCAGGTA
1 GGAATGTGTTTTAATACAAGAATGTGAAGTGATAGTTTATGCTTTCAGGTA
63972963 GGAATGTGTTTTAATACAAGAATGTGAAGTGATAGTTTATGCTTTCAGGT
1 GGAATGTGTTTTAATACAAGAATGTGAAGTGATAGTTTATGCTTTCAGGT
63973013 TAAAGTCTCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.38
Consensus pattern (51 bp):
GGAATGTGTTTTAATACAAGAATGTGAAGTGATAGTTTATGCTTTCAGGTA
Found at i:63975132 original size:42 final size:42
Alignment explanation
Indices: 63975086--63975191 Score: 158
Period size: 42 Copynumber: 2.5 Consensus size: 42
63975076 TGAGATTACG
*
63975086 TGTAAGACCATATCTGGGATATGGCATCAATATGAGAATTCA
1 TGTAAGACCATATCTGGGATATGGCATCAATAAGAGAATTCA
* * *
63975128 TGTAAGACCATATCTGCGATATGGCATCGATAAGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCAATAAGAGAATTCA
* *
63975170 TGTAAGACCATACCTGGCATAT
1 TGTAAGACCATATCTGGGATAT
63975192 TCGTATTGAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCAATAAGAGAATTCA
Found at i:63980943 original size:29 final size:29
Alignment explanation
Indices: 63980909--63980995 Score: 79
Period size: 29 Copynumber: 2.9 Consensus size: 29
63980899 TAGTGATTTG
63980909 TGAAAATTGAATTAAATTTAAATTTATGTA
1 TGAAAATT-AATTAAATTTAAATTTATGTA
* *
63980939 T-AAAATT-ATACAAAATTAAATTTCATGTA
1 TGAAAATTAAT-TAAATTTAAATTT-ATGTA
* *
63980968 TGAAAATACACATTAAATTAAAATTTAT
1 TGAAAAT-TA-ATTAAATTTAAATTTAT
63980996 ATTTAATTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
27 2 0.04
28 11 0.24
29 12 0.27
30 6 0.13
31 2 0.04
32 10 0.22
33 2 0.04
ACGTcount: A:0.51, C:0.05, G:0.06, T:0.39
Consensus pattern (29 bp):
TGAAAATTAATTAAATTTAAATTTATGTA
Found at i:63986552 original size:205 final size:205
Alignment explanation
Indices: 63986186--63986975 Score: 1318
Period size: 205 Copynumber: 3.9 Consensus size: 205
63986176 AGATTTATTT
* * * * * * * * *
63986186 CTTCGATTTGATCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
** * * * * *
63986251 GCGAAAGCCAAATCAACTATG-ATTCGATTTGTTCCTTGTAAGCATAAGGATGCCAATCCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
63986315 GGATCCGTTTCAGCATAAACATCCGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
63986380 AGATGCCAAA
196 AGATGCCAAA
63986390 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
63986455 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
63986520 GGATCTGCTTCAGCGA-AATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
131 GGATCCGCTTCAGC-ATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
63986584 AAGATGCCAAA
195 AAGATGCCAAA
63986595 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
63986660 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
63986725 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
63986790 AGATGCCAAA
196 AGATGCCAAA
63986800 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
63986865 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * *
63986930 GGATCTGCTTCAG--TGAAATCGTCTGAAGGCGAGATCTGCTATGTGT
131 GGATCCGCTTCAGCAT-AAA-CATCTGAAGGTGAGATCTGCTATGTGT
63986976 GGCCTATTAC
Statistics
Matches: 556, Mismatches: 25, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
203 1 0.00
204 78 0.14
205 476 0.86
206 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (205 bp):
CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
AGATGCCAAA
Found at i:63995023 original size:15 final size:14
Alignment explanation
Indices: 63994981--63995030 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
63994971 ATAACTTTGA
*
63994981 ATGCAAATGATGTG
1 ATGCAAATGATGAG
63994995 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
63995010 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
63995024 ATGCAAA
1 ATGCAAA
63995031 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:63998880 original size:22 final size:22
Alignment explanation
Indices: 63998829--63998889 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
63998819 ATAAGTAAAT
* *
63998829 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
63998850 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
63998872 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
63998890 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:63998989 original size:3 final size:3
Alignment explanation
Indices: 63998981--63999008 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
63998971 AAAGTAGTGC
63998981 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
63999009 GATGATCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:63999029 original size:36 final size:36
Alignment explanation
Indices: 63998986--63999078 Score: 102
Period size: 36 Copynumber: 2.6 Consensus size: 36
63998976 AGTGCTAATA
*
63998986 ATAATAATAATAATAATAATAATGATGATCTATTA-
1 ATAATAATAATAATAATAATAATGATGATATATTAG
* * *
63999021 AGTTATAATGAA-AATAATGATAATGGTGATATATTAG
1 A-TAATAAT-AATAATAATAATAATGATGATATATTAG
*
63999058 ATAATAATAGTAA-AATAATAA
1 ATAATAATAATAATAATAATAA
63999079 GTAACAATGA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
35 9 0.19
36 35 0.74
37 3 0.06
ACGTcount: A:0.54, C:0.01, G:0.11, T:0.34
Consensus pattern (36 bp):
ATAATAATAATAATAATAATAATGATGATATATTAG
Found at i:63999124 original size:16 final size:16
Alignment explanation
Indices: 63999103--63999134 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63999093 TTATAATAAT
63999103 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
63999119 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
63999135 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:63999267 original size:16 final size:15
Alignment explanation
Indices: 63999238--63999280 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
63999228 TATACGTATG
*
63999238 AAAAATAATGATAGT
1 AAAAATAATAATAGT
63999253 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
63999269 AATAATAATAAT
1 AAAAATAATAAT
63999281 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:63999383 original size:3 final size:3
Alignment explanation
Indices: 63999375--63999404 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
63999365 ACACTACCAT
63999375 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
63999405 TAGAAATACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:63999506 original size:3 final size:3
Alignment explanation
Indices: 63999498--63999526 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
63999488 AAATATACAC
63999498 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
63999527 TTAAAATGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Done.