Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 228 of 427
Found at i:64399752 original size:20 final size:20
Alignment explanation
Indices: 64399686--64399752 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
64399676 ATTTTGATAA
*
64399686 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
64399706 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
64399726 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
64399746 ACATGAT
1 ACATGAT
64399753 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:64399882 original size:23 final size:24
Alignment explanation
Indices: 64399803--64399967 Score: 257
Period size: 23 Copynumber: 7.0 Consensus size: 24
64399793 AGGAAGTGCA
*
64399803 AAAAGGGCTCATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
64399827 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
64399851 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
64399875 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
64399898 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
64399921 AAAAGGGCTT-TGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
*
64399944 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
64399968 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 64 0.48
24 62 0.47
25 7 0.05
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:64399897 original size:47 final size:48
Alignment explanation
Indices: 64399803--64399967 Score: 257
Period size: 47 Copynumber: 3.5 Consensus size: 48
64399793 AGGAAGTGCA
*
64399803 AAAAGGGCTCATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
64399851 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
64399898 AAAAGGGCTT-TGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
64399944 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
64399968 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 3, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
46 31 0.28
47 48 0.44
48 31 0.28
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:64400195 original size:31 final size:31
Alignment explanation
Indices: 64400160--64400223 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
64400150 TGTTTACAGT
*
64400160 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
64400191 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
64400222 AA
1 AA
64400224 TATTGAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:64401377 original size:6 final size:6
Alignment explanation
Indices: 64401368--64401395 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
64401358 TTGCTTTTCC
64401368 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
64401396 CAAGTTCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:64408953 original size:48 final size:48
Alignment explanation
Indices: 64408899--64409029 Score: 149
Period size: 48 Copynumber: 2.7 Consensus size: 48
64408889 GTCTCATATT
* *
64408899 GATGCCAATGCAATATCCCAGATATGGTCTTACATGGGA-TCAAAAATC
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACAT-GGACTCAAAAATC
* * * * * *
64408947 GCTGCCAATGCCATGTTCCAGACATGGTCCTACATGGACTCACATATC
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGACTCAAAAATC
*
64408995 GATGCCAATGCCATGTCCTAG-TCATGGTCTTACAT
1 GATGCCAATGCCATGTCCCAGAT-ATGGTCTTACAT
64409030 TAGATAACAC
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
47 3 0.04
48 65 0.96
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGACTCAAAAATC
Found at i:64413547 original size:68 final size:70
Alignment explanation
Indices: 64413475--64413672 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
64413465 ACACCCTGTA
* * * *
64413475 GTAGCTAGGTCACATGTGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
64413537 ATAAAT
65 ATAAAT
* *
64413543 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
64413608 ATAAAT
65 ATAAAT
* * * *
64413614 GTAGCTGGGTCTCATGCGTGATTCCAAGTGACGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCACATGCGTGATACCAAGTGA-AGACACCATGTAGACAAGAGAGCTACG
64413673 AGACAAATCG
Statistics
Matches: 116, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
68 23 0.20
69 3 0.03
70 1 0.01
71 89 0.77
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (70 bp):
GTAGCTAGGTCACATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:64413597 original size:71 final size:71
Alignment explanation
Indices: 64413509--64413672 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
64413499 GAGATGTATC
64413509 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64413574 AGGACA
66 AGGACA
* *
64413580 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCTCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
64413645 CGGACA
66 AGGACA
64413651 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64413673 AGACAAATCG
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64415462 original size:29 final size:29
Alignment explanation
Indices: 64415428--64415513 Score: 102
Period size: 29 Copynumber: 3.0 Consensus size: 29
64415418 GGTCTAACGT
64415428 GCCATATAAATGTGATTTGGGCCTAATGG
1 GCCATATAAATGTGATTTGGGCCTAATGG
** * *
64415457 GCCATATTCAGGTGATTCGGGCCTAATGG
1 GCCATATAAATGTGATTTGGGCCTAATGG
* * *
64415486 GCCATATGAATATGA-TTGGGCTTAATGG
1 GCCATATAAATGTGATTTGGGCCTAATGG
64415514 TTCAAATACA
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 11 0.23
29 36 0.77
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
GCCATATAAATGTGATTTGGGCCTAATGG
Found at i:64422190 original size:28 final size:28
Alignment explanation
Indices: 64422151--64422246 Score: 90
Period size: 28 Copynumber: 3.4 Consensus size: 28
64422141 TAATTTTGCA
*
64422151 CACACACAGTGCCTTACATCAGATCTCG
1 CACACATAGTGCCTTACATCAGATCTCG
* *
64422179 CACACAAAGTGCTCGCTTA-AT-A-ATTTCG
1 CACACATAGTG--C-CTTACATCAGATCTCG
* * *
64422207 GACACATAGTGCCTTACACCCGATCTCG
1 CACACATAGTGCCTTACATCAGATCTCG
64422235 CACACATAGTGC
1 CACACATAGTGC
64422247 TTGGTTACCA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
25 4 0.07
26 2 0.04
28 40 0.74
29 1 0.02
30 3 0.06
31 4 0.07
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (28 bp):
CACACATAGTGCCTTACATCAGATCTCG
Found at i:64422268 original size:56 final size:56
Alignment explanation
Indices: 64422151--64422272 Score: 147
Period size: 56 Copynumber: 2.2 Consensus size: 56
64422141 TAATTTTGCA
* * *
64422151 CACACACAGTGCCTTACATCAGATCTCGCACACAAAGTGCTCGCTTAATAATTTCG
1 CACACATAGTGCCTTACACCAGATCTCGCACACAAAGTGCTCGCTTAACAATTTCG
* * * * * *
64422207 GACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTTGGTTACCAATCTT-G
1 CACACATAGTGCCTTACACCAGATCTCGCACACAAAGTGCTCGCTTAACAAT-TTCG
64422263 CACACATAGT
1 CACACATAGT
64422273 ACATATATTC
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
56 53 0.96
57 2 0.04
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (56 bp):
CACACATAGTGCCTTACACCAGATCTCGCACACAAAGTGCTCGCTTAACAATTTCG
Found at i:64436878 original size:28 final size:29
Alignment explanation
Indices: 64436833--64436911 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 29
64436823 CCACGTGATT
* * * *
64436833 CAAGCCCGCACACATAGTGCCATATAGTC
1 CAAGCTCGCACACTTAGTGCCATACAGTA
*
64436862 CAA-CTCGCACACTTAGTGCCATACATTA
1 CAAGCTCGCACACTTAGTGCCATACAGTA
*
64436890 CAAGCTCGCACACTCAGTGCCA
1 CAAGCTCGCACACTTAGTGCCA
64436912 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 23 0.53
29 20 0.47
ACGTcount: A:0.30, C:0.35, G:0.15, T:0.19
Consensus pattern (29 bp):
CAAGCTCGCACACTTAGTGCCATACAGTA
Found at i:64436903 original size:29 final size:28
Alignment explanation
Indices: 64436810--64436911 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 28
64436800 TACTCAATCA
* *
64436810 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTGCCA--TACATTCAAGCT
* * *
64436839 CGCACACATAGTGCCATATAGTCCAA-CT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
64436867 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
*
64436896 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
64436912 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
27 2 0.03
28 23 0.38
29 36 0.59
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:64444849 original size:29 final size:28
Alignment explanation
Indices: 64444761--64444862 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
64444751 TACTCAATCA
* *
64444761 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
64444790 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
64444819 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
64444848 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
64444863 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 53 0.91
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:64454998 original size:40 final size:39
Alignment explanation
Indices: 64454833--64455016 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
64454823 AAATTGAATG
* * *
64454833 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
64454873 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
64454913 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
64454953 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
64454992 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
64455017 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:64455041 original size:80 final size:81
Alignment explanation
Indices: 64454873--64455061 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
64454863 GCTGGAAATT
* * * *
64454873 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
64454938 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
64454954 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
64455017 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
64455033 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
64455062 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:64456665 original size:35 final size:35
Alignment explanation
Indices: 64456489--64456668 Score: 153
Period size: 35 Copynumber: 5.1 Consensus size: 35
64456479 TACATACTTG
* * * *
64456489 TATGGCCAAATACACATGGTTCATTATATCATCACA
1 TATGGCCAAATATACA-AGTTCAATATAACATCACA
* * * * *
64456525 TATGGCCGAATATACAAGTACAATATACCATGATA
1 TATGGCCAAATATACAAGTTCAATATAACATCACA
* * * *
64456560 TATGACCGAATATACAAGTACAATAAAACATCACA
1 TATGGCCAAATATACAAGTTCAATATAACATCACA
** * * * *
64456595 CGTAGTCAAATATTCAAGTTTAATATAACATCACA
1 TATGGCCAAATATACAAGTTCAATATAACATCACA
* * *
64456630 TGTGGCCAAATATACAAGTTCAATACATCATCACA
1 TATGGCCAAATATACAAGTTCAATATAACATCACA
64456665 TATG
1 TATG
64456669 TACATACCTA
Statistics
Matches: 113, Mismatches: 31, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
35 99 0.88
36 14 0.12
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.27
Consensus pattern (35 bp):
TATGGCCAAATATACAAGTTCAATATAACATCACA
Found at i:64462285 original size:10 final size:9
Alignment explanation
Indices: 64462263--64462287 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
64462253 CAACGACTTC
64462263 AAAAACATT
1 AAAAACATT
64462272 AAAAACATT
1 AAAAACATT
64462281 AAAAACA
1 AAAAACA
64462288 GGACAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.72, C:0.12, G:0.00, T:0.16
Consensus pattern (9 bp):
AAAAACATT
Found at i:64474084 original size:40 final size:40
Alignment explanation
Indices: 64474039--64474244 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
64474029 CGGAATACAA
*
64474039 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * * *
64474079 CCGGATATAACGAGTTGAACAAATGCCTTCGGGTGTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
64474119 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
64474159 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** ** * *
64474199 CCGGATATAATTA-TTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTT-GCACGAATGCCTTCGGGTCTTAGC
64474239 CCGGAT
1 CCGGAT
64474245 GTCATTCAAT
Statistics
Matches: 137, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 132 0.96
41 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:64474186 original size:80 final size:80
Alignment explanation
Indices: 64474039--64474246 Score: 231
Period size: 80 Copynumber: 2.6 Consensus size: 80
64474029 CGGAATACAA
* * * * *
64474039 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGAGTTGAACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAACGACTAGAACAAATG
* *
64474104 CCTTCGGGTGTTAGC
66 CCTTCGGGTCTTAAC
* * * *
64474119 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTA-ACGACTAGAACAAAT
64474183 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTCTTAAC
** ** * *
64474199 CCGGATATAATTA-TTAGCATAAATGTCTTCGGGACTTAGCCCGGATGT
1 CCGGATATAACAACTT-GCACGAATGCCTTCGGGTCTTAGCCCGGATGT
64474247 CATTCAATTG
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 105 0.97
81 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAACGACTAGAACAAATG
CCTTCGGGTCTTAAC
Found at i:64477123 original size:27 final size:27
Alignment explanation
Indices: 64477092--64477187 Score: 97
Period size: 27 Copynumber: 3.6 Consensus size: 27
64477082 CGCATGTTAG
*
64477092 AAAAGAATAGCCTTTTTGGCGCATTAC
1 AAAAGAATAGCCTTTTTGGCGAATTAC
* * *
64477119 AAAAGAATAGCCTTTGTGGTGAAGTT-T
1 AAAAGAATAGCCTTTTTGGCGAA-TTAC
* * *
64477146 AAAAGAACATCTTTTTTGGC-ATATTAC
1 AAAAGAATAGCCTTTTTGGCGA-ATTAC
64477173 AAAAGAATAGCCTTT
1 AAAAGAATAGCCTTT
64477188 ATGGAAAACC
Statistics
Matches: 53, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
26 3 0.06
27 48 0.91
28 2 0.04
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (27 bp):
AAAAGAATAGCCTTTTTGGCGAATTAC
Found at i:64480697 original size:63 final size:63
Alignment explanation
Indices: 64480598--64480724 Score: 236
Period size: 63 Copynumber: 2.0 Consensus size: 63
64480588 TGTTTCCAAA
* *
64480598 TTTTTGTGACTATTTCCTAAACTTTCCAAATGATTTCAATTTGGTCCTCAATCGTCACTAAGG
1 TTTTTGTGACTATTTCCTAAACTTTCCAAATGATTTCAAATTGGTCCTCAATCATCACTAAGG
64480661 TTTTTGTGACTATTTCCTAAACTTTCCAAATGATTTCAAATTGGTCCTCAATCATCACTAAGG
1 TTTTTGTGACTATTTCCTAAACTTTCCAAATGATTTCAAATTGGTCCTCAATCATCACTAAGG
64480724 T
1 T
64480725 ATTTACGATT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (63 bp):
TTTTTGTGACTATTTCCTAAACTTTCCAAATGATTTCAAATTGGTCCTCAATCATCACTAAGG
Found at i:64482551 original size:27 final size:28
Alignment explanation
Indices: 64482486--64482554 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
64482476 AATGAGATTG
*
64482486 GCACTAAGTGTGCGAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTGAATTGTATA
*
64482514 GCACTAAGTGTGCGAGTTGACTAT-TA-A
1 GCACTAAGTGTGCGAGTTGAAT-TGTATA
64482541 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64482555 GACTTACTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 15 0.39
28 22 0.58
29 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTGAATTGTATA
Found at i:64482563 original size:27 final size:27
Alignment explanation
Indices: 64482486--64482564 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 27
64482476 AATGAGATTG
* * *
64482486 GCACTAAGTGTGCGAGTTTAAT-TGTATA
1 GCACTAAGTGTGCGACTTGACTAT-TA-A
*
64482514 GCACTAAGTGTGCGAGTTGACTATTAA
1 GCACTAAGTGTGCGACTTGACTATTAA
64482541 GCACTAAGTGTGCGGACTT-ACTAT
1 GCACTAAGTGTGC-GACTTGACTAT
64482565 ATATTTTCGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
27 19 0.41
28 26 0.57
29 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTGACTATTAA
Found at i:64490260 original size:27 final size:28
Alignment explanation
Indices: 64490195--64490263 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
64490185 AATGAGATTG
*
64490195 GCACTAAGTGTGCGAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTGAATTGTATA
*
64490223 GCACTAAGTGTGCGAGTTGACTAT-TA-A
1 GCACTAAGTGTGCGAGTTGAAT-TGTATA
64490250 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64490264 GACTTACTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 15 0.39
28 22 0.58
29 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTGAATTGTATA
Found at i:64490272 original size:27 final size:27
Alignment explanation
Indices: 64490195--64490273 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 27
64490185 AATGAGATTG
* * *
64490195 GCACTAAGTGTGCGAGTTTAAT-TGTATA
1 GCACTAAGTGTGCGACTTGACTAT-TA-A
*
64490223 GCACTAAGTGTGCGAGTTGACTATTAA
1 GCACTAAGTGTGCGACTTGACTATTAA
64490250 GCACTAAGTGTGCGGACTT-ACTAT
1 GCACTAAGTGTGC-GACTTGACTAT
64490274 ATATTTTCGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
27 19 0.41
28 26 0.57
29 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTGACTATTAA
Found at i:64493789 original size:25 final size:25
Alignment explanation
Indices: 64493753--64493825 Score: 112
Period size: 25 Copynumber: 2.9 Consensus size: 25
64493743 GGAGGAAGTG
*
64493753 CAAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTAAC
*
64493778 CGAAAAA-GGCTTTGCCCCAGTTAAT
1 C-AAAAAGGGCTTTGCCCCAGTTAAC
64493803 CAAAAAGGGCTTTGCCCCAGTTA
1 CAAAAAGGGCTTTGCCCCAGTTA
64493826 TTAAAAGAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.11
25 34 0.77
26 5 0.11
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTAAC
Found at i:64493837 original size:24 final size:23
Alignment explanation
Indices: 64493753--64493837 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 23
64493743 GGAGGAAGTG
*
64493753 CAAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAA-GGCTTTGCCCCAG-TTAT
64493778 CGAAAAAGGCTTTGCCCCAGTTAAT
1 C-AAAAAGGCTTTGCCCCAGTT-AT
64493803 CAAAAAGGGCTTTGCCCCAGTTAT
1 CAAAAA-GGCTTTGCCCCAGTTAT
*
64493827 TAAAAGAGGCT
1 CAAAA-AGGCT
64493838 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
24 17 0.31
25 32 0.59
26 5 0.09
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (23 bp):
CAAAAAGGCTTTGCCCCAGTTAT
Found at i:64493848 original size:50 final size:50
Alignment explanation
Indices: 64493753--64493851 Score: 130
Period size: 50 Copynumber: 2.0 Consensus size: 50
64493743 GGAGGAAGTG
**
64493753 CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAAGGCTTTGCCCCAGTTAAT
1 CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAAGGCTAGGCCCCAGTTAAT
**
64493803 CAAAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTTAA
1 CAAAAAGGGCTTTGCCCCAGTTTACCGAAAA-AGGCTAGGCC-CCAGTTAA
64493852 ATGATAAAGC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
48 4 0.09
49 11 0.26
50 28 0.65
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (50 bp):
CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAAGGCTAGGCCCCAGTTAAT
Found at i:64494420 original size:22 final size:22
Alignment explanation
Indices: 64494379--64494420 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
64494369 TATTTTATTA
* *
64494379 TTCTTATAATAACTCTAAATTT
1 TTCTGATAATAACTCAAAATTT
*
64494401 TTCTGATAATAATTCAAAAT
1 TTCTGATAATAACTCAAAAT
64494421 GGGCTAGACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.45
Consensus pattern (22 bp):
TTCTGATAATAACTCAAAATTT
Found at i:64501744 original size:16 final size:16
Alignment explanation
Indices: 64501723--64501753 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64501713 ATTTTGATAT
64501723 ACATGATATGATATGC
1 ACATGATATGATATGC
*
64501739 ACATGATATGTTATG
1 ACATGATATGATATG
64501754 AGATGCACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (16 bp):
ACATGATATGATATGC
Found at i:64501753 original size:21 final size:21
Alignment explanation
Indices: 64501729--64501768 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64501719 ATATACATGA
* *
64501729 TATGATATGCACATGATATGT
1 TATGAGATGCACAAGATATGT
64501750 TATGAGATGCACAAGATAT
1 TATGAGATGCACAAGATAT
64501769 ATTCATTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (21 bp):
TATGAGATGCACAAGATATGT
Found at i:64501868 original size:24 final size:25
Alignment explanation
Indices: 64501814--64501886 Score: 110
Period size: 25 Copynumber: 2.9 Consensus size: 25
64501804 GGAGGAAGTG
* *
64501814 CAAAAAAGGCTTTGCCCCAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTAAC
*
64501839 CAAAAAGGGCTTTGCCCCAGTTAAT
1 CAAAAAGGGCTTTGCCCCAGTTAAC
*
64501864 CAAAAAGGGCTTTGCCCTAGTTA
1 CAAAAAGGGCTTTGCCCCAGTTA
64501887 TTAACAGAGG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTAAC
Found at i:64502445 original size:22 final size:22
Alignment explanation
Indices: 64502404--64502445 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
64502394 TATTTTATTC
* *
64502404 TTCTTATAATAACTCTAAATTT
1 TTCTGATAATAACTCAAAATTT
*
64502426 TTCTGATAATAATTCAAAAT
1 TTCTGATAATAACTCAAAAT
64502446 GGGCTAGACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.45
Consensus pattern (22 bp):
TTCTGATAATAACTCAAAATTT
Found at i:64504379 original size:43 final size:43
Alignment explanation
Indices: 64504331--64504481 Score: 171
Period size: 43 Copynumber: 3.5 Consensus size: 43
64504321 TATCGTAGAT
* * *
64504331 ATGGTCTTACATGTTATCTCATATCGATTCCAATGTCCCATAC
1 ATGGTCTTACATGTAATCTCATATCGATGCCAATGTCCCAGAC
* * *
64504374 ATGGTCTTACATGAAATCAT-GTAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATC-TCATATCGATGCCAATGTCCCAGAC
** * **
64504417 ATGGTCTTACACATAATCACA-ATAAAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCTCATAT-CGATGCCAATGTCCCAGAC
64504460 ATGGTCTTACATGTAATCTCAT
1 ATGGTCTTACATGTAATCTCAT
64504482 CTCGGAAATC
Statistics
Matches: 87, Mismatches: 17, Indels: 7
0.78 0.15 0.06
Matches are distributed among these distances:
42 1 0.01
43 85 0.98
44 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCTCATATCGATGCCAATGTCCCAGAC
Found at i:64508005 original size:29 final size:29
Alignment explanation
Indices: 64507963--64508054 Score: 125
Period size: 29 Copynumber: 3.2 Consensus size: 29
64507953 GTGAGCATGA
* *
64507963 ATAT-AAGGTGATTTGGGCCTAACGGGCC
1 ATATAAAGGTGATTTGGGCCTGATGGGCC
64507991 ATATAAAGGTGATTTGGGCCTGATGGGCC
1 ATATAAAGGTGATTTGGGCCTGATGGGCC
* * *
64508020 ATATGAATGTGAATTGGGCC-GATGGGCC
1 ATATAAAGGTGATTTGGGCCTGATGGGCC
64508048 ATATAAA
1 ATATAAA
64508055 TGAGATTGGG
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 18 0.32
29 39 0.68
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTGATGGGCC
Found at i:64508056 original size:28 final size:29
Alignment explanation
Indices: 64507970--64508064 Score: 113
Period size: 29 Copynumber: 3.3 Consensus size: 29
64507960 TGAATATAAG
* * * *
64507970 GTGATTTGGGCCTAACGGGCCATATAAAG
1 GTGAATTGGGCCTGATGGGCCATATAAAT
* *
64507999 GTGATTTGGGCCTGATGGGCCATATGAAT
1 GTGAATTGGGCCTGATGGGCCATATAAAT
64508028 GTGAATTGGGCC-GATGGGCCATATAAAT
1 GTGAATTGGGCCTGATGGGCCATATAAAT
*
64508056 GAG-ATTGGG
1 GTGAATTGGG
64508065 GCAAATGGGC
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 6 0.10
28 17 0.29
29 36 0.61
ACGTcount: A:0.25, C:0.14, G:0.35, T:0.26
Consensus pattern (29 bp):
GTGAATTGGGCCTGATGGGCCATATAAAT
Found at i:64508072 original size:28 final size:28
Alignment explanation
Indices: 64507986--64508079 Score: 91
Period size: 28 Copynumber: 3.3 Consensus size: 28
64507976 TGGGCCTAAC
* * *
64507986 GGGCCATATAAAGGTGATTTGGGCCTGAT
1 GGGCCATATAAATGTGA-TTGGGGCAGAT
* *
64508015 GGGCCATATGAATGTGAATT-GGGCCGAT
1 GGGCCATATAAATGTG-ATTGGGGCAGAT
* *
64508043 GGGCCATATAAATGAGATTGGGGCAAAT
1 GGGCCATATAAATGTGATTGGGGCAGAT
*
64508071 GGGCTATAT
1 GGGCCATAT
64508080 GCATGTATGT
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
27 3 0.06
28 34 0.63
29 16 0.30
30 1 0.02
ACGTcount: A:0.28, C:0.13, G:0.34, T:0.26
Consensus pattern (28 bp):
GGGCCATATAAATGTGATTGGGGCAGAT
Found at i:64510361 original size:48 final size:49
Alignment explanation
Indices: 64510309--64510437 Score: 145
Period size: 49 Copynumber: 2.7 Consensus size: 49
64510299 CATCAAAGTT
* * *
64510309 GATGCCATGTCCCAGACAGGTCTTACATTGACTTTCAT-AATCGAG-GCC
1 GATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATCAATCG-GTGCC
** * * * * *
64510357 GATGCTGTGTCCTAGATAGGTCTTACACTGGCTCTCATCTATTGGTGTC
1 GATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATCAATCGGTGCC
64510406 GATGCCATGTCCCAGATAGGTCTTACACTGAC
1 GATGCCATGTCCCAGATAGGTCTTACACTGAC
64510438 ACACAAGAAG
Statistics
Matches: 65, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
48 32 0.49
49 33 0.51
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (49 bp):
GATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATCAATCGGTGCC
Found at i:64510562 original size:46 final size:46
Alignment explanation
Indices: 64510498--64510621 Score: 148
Period size: 46 Copynumber: 2.7 Consensus size: 46
64510488 ATCTCGAGAC
* *
64510498 CGATGCATGTCCCAGACATGTCTTACACTAGCTGTCGTC-TCA-AT-GT
1 CGATGCATGTCCTAGACATGTCTTACACTAGC--TC-TCATAATATGGT
* *
64510544 TGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAATATGGT
1 CGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATAATATGGT
64510590 CGATGCATGT-CTCAGACATGTCTTACACTAGC
1 CGATGCATGTCCT-AGACATGTCTTACACTAGC
64510622 ACACATATCA
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
43 2 0.03
44 4 0.06
45 4 0.06
46 58 0.85
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (46 bp):
CGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATAATATGGT
Found at i:64512881 original size:23 final size:23
Alignment explanation
Indices: 64512832--64512884 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
64512822 TTGGTGGCTT
*
64512832 TGCTGCGTTACTACAAGAAGCTT
1 TGCTGCGTTACTACAAGAAGCTA
** *
64512855 TGCTGCGTTACTATTAGCAGCTA
1 TGCTGCGTTACTACAAGAAGCTA
64512878 TGCTGCG
1 TGCTGCG
64512885 ATATTGGTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.32
Consensus pattern (23 bp):
TGCTGCGTTACTACAAGAAGCTA
Found at i:64513071 original size:33 final size:33
Alignment explanation
Indices: 64513003--64513095 Score: 125
Period size: 33 Copynumber: 2.8 Consensus size: 33
64512993 AGGCCCATAT
*
64513003 TGTTACTGCATAGGGCTTAGG-CCAGACTGTAC
1 TGTTACTGAATAGGGCTTAGGCCCAGACTGTAC
* *
64513035 TGTTACTGGATAGGGCTTAGGCCCAGACTGTGC
1 TGTTACTGAATAGGGCTTAGGCCCAGACTGTAC
* * *
64513068 TGTTATTAAATAGGGCTCAGGCCCAGAC
1 TGTTACTGAATAGGGCTTAGGCCCAGAC
64513096 CATTACTGTA
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
32 20 0.37
33 34 0.63
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (33 bp):
TGTTACTGAATAGGGCTTAGGCCCAGACTGTAC
Found at i:64517297 original size:47 final size:47
Alignment explanation
Indices: 64517139--64517289 Score: 136
Period size: 46 Copynumber: 3.3 Consensus size: 47
64517129 TGAGACGGGT
* * * * * *
64517139 GCTAGTGTAAGACATCTCTGGGACATGCATCAGCCT-CAAGACG-TAA
1 GCTAGTGTAAGACATGTCTGGGACATGCGT-TGACTACGAGATGATAA
*
64517185 GCTAGTGTAAGACATGTCTGGGACATGCGTTGGCTACGAGATGAT-A
1 GCTAGTGTAAGACATGTCTGGGACATGCGTTGACTACGAGATGATAA
*
64517231 G-TCAGTGTAAGACCATGTCTGGGACATG-GCTTCGACT-TGAGAT-ATAA
1 GCT-AGTGTAAGA-CATGTCTGGGACATGCG-TT-GACTACGAGATGATAA
64517278 GCTAGTGTAAGA
1 GCTAGTGTAAGA
64517290 TCGTGTCTAA
Statistics
Matches: 89, Mismatches: 8, Indels: 15
0.79 0.07 0.13
Matches are distributed among these distances:
45 4 0.04
46 47 0.53
47 34 0.38
48 4 0.04
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCGTTGACTACGAGATGATAA
Found at i:64518034 original size:12 final size:12
Alignment explanation
Indices: 64518013--64518046 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
64518003 CTAATTTTGT
64518013 ACACACGGGTAA
1 ACACACGGGTAA
* *
64518025 ACACATGGGTAG
1 ACACACGGGTAA
64518037 ACACACGGGT
1 ACACACGGGT
64518047 GTATGTCTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.24, G:0.29, T:0.12
Consensus pattern (12 bp):
ACACACGGGTAA
Found at i:64518328 original size:28 final size:28
Alignment explanation
Indices: 64518288--64518345 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 28
64518278 CACACGGGCT
64518288 AGGACACGGGC-GTGCCATGGCCGTGTGA
1 AGGACACGGGCGGTGCCA-GGCCGTGTGA
*
64518316 AGGACATGGGCGTGTGCCAGGCCGTGTGA
1 AGGACACGGGCG-GTGCCAGGCCGTGTGA
64518345 A
1 A
64518346 AACCCCTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 10 0.37
29 11 0.41
30 6 0.22
ACGTcount: A:0.19, C:0.22, G:0.43, T:0.16
Consensus pattern (28 bp):
AGGACACGGGCGGTGCCAGGCCGTGTGA
Found at i:64527551 original size:47 final size:48
Alignment explanation
Indices: 64527386--64527595 Score: 161
Period size: 46 Copynumber: 4.5 Consensus size: 48
64527376 TTTGTGACAG
* **
64527386 CTAGTGTAAGACCATGTTTGGGATGTAGCATCGGCATTGAGACG--AGT
1 CTAGTGTAAGACCATGTCTGGGACATAGCATCGGC-TTGAGACGTAAGT
* * *
64527433 GCTAGTGTAAGA-CATGTCTAGGACAT-GTATCAGCCTTGAGACGTAAG-
1 -CTAGTGTAAGACCATGTCTGGGACATAGCATC-GGCTTGAGACGTAAGT
* * *
64527480 CCAATGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATG-ATAGT
1 CTAGTGTAAGACCATGTCTGGGACATAGCATCGGCT-TGAGACGTA-AGT
* * * **
64527527 C-AGTGTAAGACCATGTCTGGGACATGGCTTCGACTTGAGATATAAG-
1 CTAGTGTAAGACCATGTCTGGGACATAGCATCGGCTTGAGACGTAAGT
**
64527573 CTAGTGTAAGACTTTGTCTGGGA
1 CTAGTGTAAGACCATGTCTGGGA
64527596 TAAGGCATCG
Statistics
Matches: 134, Mismatches: 18, Indels: 21
0.77 0.10 0.12
Matches are distributed among these distances:
45 4 0.03
46 55 0.41
47 54 0.40
48 21 0.16
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGGACATAGCATCGGCTTGAGACGTAAGT
Found at i:64529944 original size:50 final size:50
Alignment explanation
Indices: 64529830--64530452 Score: 610
Period size: 50 Copynumber: 12.4 Consensus size: 50
64529820 TTGGTACGCT
* * * * * *
64529830 TAGTAGCCTGCACTTAGAACTACACATGTGATC-AACAATCCGATACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
*
64529879 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
* * * * * * *
64529929 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CTATCTGATACACG
* * * * * * *
64529980 TAGTAGCTTGCACTTAGTATTACACATGTAATCGAACTATCT-AGTACAGG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGA-TACACG
* * * **
64530030 TAGTAGCTTGCACTTAGTACTACACACGTGAACTAACCATCTGATTTACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
* * * * * * *
64530080 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGTTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CTATCTGATACACG
* * * * *
64530131 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCCGATACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
* * *
64530180 TAGTAGCCTGCACTTAGAACTACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
*** * *
64530230 TAGTAGCCTGCACTTAGTACTACACATACGACCTAACTATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
* *
64530280 TAGTAGCCTGCATTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
* * * * * * * *
64530330 TAGTAGCCTGCACTTAGTACTATACACGTGA-TTGAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CTATCTGATACACG
* *
64530381 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
*
64530431 TAGTAGCCTTCACTTAGTACTA
1 TAGTAGCCTGCACTTAGTACTA
64530453 TACATGTGTT
Statistics
Matches: 468, Mismatches: 93, Indels: 25
0.80 0.16 0.04
Matches are distributed among these distances:
49 72 0.15
50 286 0.61
51 109 0.23
52 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
Found at i:64530071 original size:151 final size:150
Alignment explanation
Indices: 64529822--64530360 Score: 706
Period size: 150 Copynumber: 3.6 Consensus size: 150
64529812 GAAGCTATTT
* *
64529822 GGTACGCTTAGTAGCCTGCACTTAGAACTACACATGTGATCAACAATCCGATACACATAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGATCAACAATCCGATACACATAGTAGCC
64529887 TGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
64529952 ACACGTGATTGAAGTTGTCG
131 ACACGTGATTGAAGTTGTCG
* * * * * **
64529972 GGTACGCATAGTAGCTTGCACTTAGTATTACACATGTAATCGAACTAT-CTAGTACAGGTAGTAG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGATC-AACAATCCGA-TACACATAGTAG
* * **
64530036 CTTGCACTTAGTACTACACACGTGAACTAACCATCTGATTTACGTAGTAGCCTGCACTTAGTACT
64 CCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACT
64530101 ACACACGTGATTGAAGTTGTCG
129 ACACACGTGATTGAAGTTGTCG
* * *
64530123 GTTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGATACACATAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGATCAACAATCCGATACACATAGTAGCC
* *
64530188 TGCACTTAGAACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
*** * * * *
64530253 ACATACGACCT-AA-CTATCT
131 ACACGTGA-TTGAAGTTGTCG
*** * * * * * *
64530272 GGTACATGTAGTAGCCTGCATTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGATC-AACAATCCGATACACATAGTAGC
*
64530337 CTGCACTTAGTACTATACACGTGA
65 CTGCACTTAGTACTACACACGTGA
64530361 TTGAAGTTGT
Statistics
Matches: 335, Mismatches: 49, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
149 37 0.11
150 162 0.48
151 136 0.41
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGATCAACAATCCGATACACATAGTAGCC
TGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
ACACGTGATTGAAGTTGTCG
Found at i:64530387 original size:301 final size:301
Alignment explanation
Indices: 64529824--64530411 Score: 774
Period size: 301 Copynumber: 2.0 Consensus size: 301
64529814 AGCTATTTGG
* * *
64529824 TACGCTTAGTAGCCTGCACTTAGAACTACACATGTGATCAACAATCCGATACACATAGTAGCCTG
1 TACGCATAGTAGCCTGCACTTAGAACTACACATGCGACCAACAATCCGATACACATAGTAGCCTG
*
64529889 CACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACAC
66 CACTTAGAACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACAC
** * * * * * * * * *
64529954 ACGTGATTGAAGTTGTCGGGTACGCATAGTAGCTTGCACTTAGTATTACACATGTAATCGAACTA
131 ACACGACTGAAGCTATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACGTAACCGAACCA
* * **
64530019 TCTAGTACAGGTAGTAGCTTGCACTTAGTACTACACACGTGAACTAACCATCTGATTTACGTAGT
196 TCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACTAACCATCTGAGGTACGTAGT
64530084 AGCCTGCACTTAGTACTACACACGTGATTGAAGTTGTCGGT
261 AGCCTGCACTTAGTACTACACACGTGATTGAAGTTGTCGGT
*
64530125 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGATACACATAGTAGCCTG
1 TACGCATAGTAGCCTGCACTTAGAACTACACATGCGACCAACAATCCGATACACATAGTAGCCTG
*
64530190 CACTTAGAACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACAC
66 CACTTAGAACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACAC
* * ** * * *
64530255 ATACGACCT-AA-CTATCTGGTACATGTAGTAGCCTGCATTTAGTACTACACACGTGACCTAACC
131 ACACGA-CTGAAGCTATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACGTAACCGAACC
* * ** *
64530318 ATCT-GATACACGTAGTAGCCTGCACTTAGTACTATACACGTG-ATTGAA-GTTGTCG-GGTACG
195 ATCTAG-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACT-AACCATCT-GAGGTACG
*
64530379 CATAGTAGCCTGCACTTAGTACTACACATGTGA
257 --TAGTAGCCTGCACTTAGTACTACACACGTGA
64530412 CCTAACTATC
Statistics
Matches: 247, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
299 9 0.04
300 78 0.32
301 159 0.64
302 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (301 bp):
TACGCATAGTAGCCTGCACTTAGAACTACACATGCGACCAACAATCCGATACACATAGTAGCCTG
CACTTAGAACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACAC
ACACGACTGAAGCTATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACGTAACCGAACCA
TCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACTAACCATCTGAGGTACGTAGT
AGCCTGCACTTAGTACTACACACGTGATTGAAGTTGTCGGT
Found at i:64532161 original size:12 final size:13
Alignment explanation
Indices: 64532134--64532173 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
64532124 GTTTTTGTTG
64532134 TTATTTCTTCTTT
1 TTATTTCTTCTTT
64532147 TTATTTCTT-TTT
1 TTATTTCTTCTTT
64532159 TTATTTCTTCTTT
1 TTATTTCTTCTTT
64532172 TT
1 TT
64532174 TTGCGATTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.46
13 14 0.54
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.80
Consensus pattern (13 bp):
TTATTTCTTCTTT
Found at i:64534573 original size:24 final size:23
Alignment explanation
Indices: 64534529--64534584 Score: 76
Period size: 24 Copynumber: 2.4 Consensus size: 23
64534519 TTTTGCTTTC
*
64534529 TTATTTAATTAACTTTGTATTCT
1 TTATTTTATTAACTTTGTATTCT
*
64534552 TTATTTTATTAACTTTTTTATTCT
1 TTATTTTATTAAC-TTTGTATTCT
*
64534576 TGATTTTAT
1 TTATTTTAT
64534585 CTTTATCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 12 0.41
24 17 0.59
ACGTcount: A:0.23, C:0.07, G:0.04, T:0.66
Consensus pattern (23 bp):
TTATTTTATTAACTTTGTATTCT
Found at i:64536984 original size:21 final size:21
Alignment explanation
Indices: 64536955--64536998 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
64536945 AATTTATATG
*
64536955 ATTTCTTACAATTTTTTTATA
1 ATTTCTTACAATTTTTTAATA
* *
64536976 ATTTTTTACTATTTTTTAATA
1 ATTTCTTACAATTTTTTAATA
64536997 AT
1 AT
64536999 ATTGAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTTCTTACAATTTTTTAATA
Found at i:64541886 original size:49 final size:50
Alignment explanation
Indices: 64541705--64541899 Score: 178
Period size: 50 Copynumber: 3.9 Consensus size: 50
64541695 GCTACTACGT
* * * * *** *
64541705 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACTC-GACAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGA-TGGTTA
* * * *
64541756 GATCACGTGTGTAGTACTAAGTGCAGGCTACAACGTGTATCAGATGGTTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTA
* * * *
64541806 GGTCACATGTGTAGTAATAAGTGTAGGCTACTACGTGTACCGGATTGTT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTA
* * * *
64541855 GGTCGCATGTGTAGTACTAAGTGCAGACTACTATGCGTACCAGAT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
64541900 AGCTTTGGTT
Statistics
Matches: 116, Mismatches: 27, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 38 0.33
50 44 0.38
51 34 0.29
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTA
Found at i:64547926 original size:40 final size:40
Alignment explanation
Indices: 64547864--64547940 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
64547854 ACGGTACCAT
* *
64547864 TTGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCATAC
1 TTGGTGTGTAGGGCTGGATGGGTCGATTTTATCCCCATAC
*
64547904 TTGGTGTGTAGGGCTGGGTGGGTCGATTTTATCCCCA
1 TTGGTGTGTAGGGCTGGATGGGTCGATTTTATCCCCA
64547941 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.13, C:0.14, G:0.35, T:0.38
Consensus pattern (40 bp):
TTGGTGTGTAGGGCTGGATGGGTCGATTTTATCCCCATAC
Found at i:64550052 original size:16 final size:15
Alignment explanation
Indices: 64550031--64550060 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
64550021 GAATGGAGTA
64550031 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
64550047 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
64550061 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:64559071 original size:40 final size:40
Alignment explanation
Indices: 64558994--64559217 Score: 265
Period size: 40 Copynumber: 5.5 Consensus size: 40
64558984 ACCCAAGTAT
* *
64558994 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
64559033 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
64559073 TTTCGGGACTTAGCCCGGATATAGTCACTAGGACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
64559113 CTTCGGGACTTAGCCCGGGTACAG-CAACTACTCGCACAAATAC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
64559156 CTTCGAGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
64559196 CTTCGGGACTTAGCCTGGATAT
1 CTTCGGGACTTAGCCCGGATAT
64559218 CATCCGAATA
Statistics
Matches: 157, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
39 12 0.08
40 112 0.71
41 1 0.01
43 32 0.20
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:64559193 original size:83 final size:80
Alignment explanation
Indices: 64558994--64559216 Score: 270
Period size: 83 Copynumber: 2.8 Consensus size: 80
64558984 ACCCAAGTAT
* * * * *
64558994 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATACAGT
* *
64559058 CACTAGCATAAATGC
66 CACTAGCACAAATAC
* * * *
64559073 TTTCGGGACTTAGCCCGGATATAGTCACTAGGACAAATGCCTTCGGGACTTAGCCCGGGTACAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATACAGT
64559137 CAACTACTCGCACAAATAC
66 C-ACTA---GCACAAATAC
* * *
64559156 CTTCGAGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCTGGATA
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATA
64559217 TCATCCGAAT
Statistics
Matches: 121, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
79 12 0.10
80 47 0.39
83 62 0.51
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATACAGT
CACTAGCACAAATAC
Found at i:64563658 original size:14 final size:14
Alignment explanation
Indices: 64563639--64563668 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
64563629 GAATATTATG
64563639 ATCATTTTAGGCTC
1 ATCATTTTAGGCTC
64563653 ATCATTTTAGGCTC
1 ATCATTTTAGGCTC
64563667 AT
1 AT
64563669 ATACGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.43
Consensus pattern (14 bp):
ATCATTTTAGGCTC
Found at i:64568810 original size:39 final size:40
Alignment explanation
Indices: 64568671--64568893 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
64568661 GCTACTCGTT
* *
64568671 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
64568711 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACT-GCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
64568750 CAAATG-CTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
64568789 -AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
64568828 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
64568869 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
64568894 CATCATTCGA
Statistics
Matches: 168, Mismatches: 8, Indels: 14
0.88 0.04 0.07
Matches are distributed among these distances:
38 34 0.20
39 48 0.29
40 73 0.43
41 13 0.08
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:64568853 original size:117 final size:119
Alignment explanation
Indices: 64568672--64568893 Score: 319
Period size: 117 Copynumber: 1.9 Consensus size: 119
64568662 CTACTCGTTC
*
64568672 AAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
*
64568737 TTTAGTAAC-T-GCACAAATG-CTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 TATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
64568789 AAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 AAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
64568852 GATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
64568894 CATCATTCGA
Statistics
Matches: 93, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
116 3 0.03
117 61 0.66
118 4 0.04
119 25 0.27
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (119 bp):
AAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:64576971 original size:40 final size:39
Alignment explanation
Indices: 64576934--64577155 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 39
64576924 GCTACTCGTT
*
64576934 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
64576974 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
*
64577014 CAAATG-CTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
64577052 CAAATGCCTTCGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
64577090 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
64577131 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
64577156 CATCATTCGA
Statistics
Matches: 169, Mismatches: 7, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
38 68 0.40
39 19 0.11
40 69 0.41
41 13 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:64577037 original size:38 final size:40
Alignment explanation
Indices: 64576934--64577155 Score: 296
Period size: 38 Copynumber: 5.7 Consensus size: 40
64576924 GCTACTCGTT
* *
64576934 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
64576974 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
64577014 CAAATG-CTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
64577052 CAAATGCCTTC-GGACTT-ACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
64577090 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
64577131 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
64577156 CATCATTCGA
Statistics
Matches: 168, Mismatches: 8, Indels: 12
0.89 0.04 0.06
Matches are distributed among these distances:
38 69 0.41
39 17 0.10
40 69 0.41
41 13 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:64577053 original size:78 final size:79
Alignment explanation
Indices: 64576934--64577155 Score: 310
Period size: 78 Copynumber: 2.8 Consensus size: 79
64576924 GCTACTCGTT
*
64576934 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
64576998 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
*
64577014 CAAATG-CTTCGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTC-GGACTT-ACCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
64577076 TTTAGTAACTCGCA
66 TTTAGTAACTCGCA
* * * * *
64577090 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCG
64577154 GA
64 GA
64577156 CATCATTCGA
Statistics
Matches: 128, Mismatches: 8, Indels: 12
0.86 0.05 0.08
Matches are distributed among these distances:
76 27 0.21
77 13 0.10
78 56 0.44
79 20 0.16
80 12 0.09
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTCGCA
Found at i:64587942 original size:93 final size:93
Alignment explanation
Indices: 64587830--64588001 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
64587820 GCCCATAAGT
* *
64587830 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64587895 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
64587923 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64587988 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
64588002 AAATCCTAGT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64587997 original size:46 final size:46
Alignment explanation
Indices: 64587822--64587997 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
64587812 TGTAACCCGC
* * *
64587822 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
64587868 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
64587918 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
64587961 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
64587998 TGCCAAATCC
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:64590406 original size:30 final size:30
Alignment explanation
Indices: 64590362--64590450 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
64590352 CAAAGATAAC
64590362 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
64590391 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
64590421 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
64590451 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:64590410 original size:15 final size:15
Alignment explanation
Indices: 64590362--64590441 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
64590352 CAAAGATAAC
*
64590362 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
64590376 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
64590391 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
64590406 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
64590421 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
64590436 AAGAAA
1 AAGAAA
64590442 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:64590450 original size:15 final size:15
Alignment explanation
Indices: 64590373--64590450 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
64590363 AGAAAACCGA
64590373 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
64590388 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
64590402 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
64590417 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
64590433 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
64590448 ATA
1 ATA
64590451 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:64593477 original size:93 final size:93
Alignment explanation
Indices: 64593365--64593536 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
64593355 GCCCATAAGT
* *
64593365 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64593430 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
64593458 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64593523 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
64593537 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64593532 original size:46 final size:46
Alignment explanation
Indices: 64593357--64593532 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
64593347 TGTAACCCGC
* * *
64593357 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
64593403 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
64593453 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
64593496 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
64593533 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:64596995 original size:40 final size:40
Alignment explanation
Indices: 64596966--64597117 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
64596956 TTATAGTGAT
*
64596966 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGTAAC
* * * * *
64597006 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGTAAC
* *
64597046 TCGCACAAATGCCTTCGGGAATT-GACCCGGATTTAATCAC
1 TCGCACAAATGCCTTCGGGAATTAG-CCCGGATTTAGTAAC
* * *
64597086 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGAATTAGCCCGGA
64597118 CACCATTCGA
Statistics
Matches: 93, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 66 0.71
41 26 0.28
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGTAAC
Found at i:64597050 original size:80 final size:81
Alignment explanation
Indices: 64596966--64597116 Score: 216
Period size: 80 Copynumber: 1.9 Consensus size: 81
64596956 TTATAGTGAT
* * * * *
64596966 TCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAGTAAC-TCGCACGAATGCCTTCGGGACTT
1 TCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAATAACTTAGCACAAAAGCCTTCGGGACTT
64597029 AACCCGGTTTTGGTAAC
65 AACCCGGTTTTGGTAAC
*
64597046 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAATCACTTAGCACAAAAGCCTTCGGGACTTA
1 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAATAACTTAGCACAAAAGCCTTCGGGACTTA
*
64597111 GCCCGG
66 ACCCGG
64597117 ACACCATTCG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
80 35 0.56
81 27 0.44
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAATAACTTAGCACAAAAGCCTTCGGGACTTA
ACCCGGTTTTGGTAAC
Found at i:64601988 original size:30 final size:30
Alignment explanation
Indices: 64601954--64602013 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
64601944 ATTTAATACG
64601954 AACTTTGGAAAAATTACA-TATTTGCCCCTA
1 AACTTTGGAAAAATTACACT-TTTGCCCCTA
* * *
64601984 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
64602014 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:64609531 original size:30 final size:30
Alignment explanation
Indices: 64609497--64609557 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
64609487 CATTTAATAC
64609497 AAACTTTGGAAAAATTACA-TATTTGCCCCT
1 AAACTTTGGAAAAATTACACT-TTTGCCCCT
* * *
64609527 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
64609557 A
1 A
64609558 GGTTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:64615031 original size:35 final size:35
Alignment explanation
Indices: 64614992--64615150 Score: 174
Period size: 35 Copynumber: 4.5 Consensus size: 35
64614982 GTATGTACAT
* *
64614992 ATGTGATGATGTATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTCGGCCAC
* * * * *
64615027 ATGTGATGTTATATTAAACTTGAATATTCGACTAC
1 ATGTGATGATATATTGAACTTGTATATTCGGCCAC
* * * * *
64615062 ATGTGATGTTTTATTGAACTTGTATATTTGGTCAT
1 ATGTGATGATATATTGAACTTGTATATTCGGCCAC
* * *
64615097 ATATGATGATATATTGTACTTGTATATTCGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTCGGCCAC
*
64615132 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
64615151 CATGTGTATT
Statistics
Matches: 100, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 100 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTCGGCCAC
Found at i:64615077 original size:70 final size:70
Alignment explanation
Indices: 64614992--64615150 Score: 192
Period size: 70 Copynumber: 2.3 Consensus size: 70
64614982 GTATGTACAT
* *
64614992 ATGTGATGATGTATTGAACTTGTATATTTGGCCACATGTGATGTTATATTAAACTTGAATATTCG
1 ATGTGATGATGTATTGAACTTGTATATTTGGCCACATATGATGATATATTAAACTTGAATATTCG
64615057 ACTAC
66 ACTAC
* * * * ** *
64615062 ATGTGATGTTTTATTGAACTTGTATATTTGGTCATATATGATGATATATTGTACTTGTATATTCG
1 ATGTGATGATGTATTGAACTTGTATATTTGGCCACATATGATGATATATTAAACTTGAATATTCG
* * *
64615127 GCCAT
66 ACTAC
* *
64615132 ATGTGATGATATAATGAAC
1 ATGTGATGATGTATTGAAC
64615151 CATGTGTATT
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
70 74 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (70 bp):
ATGTGATGATGTATTGAACTTGTATATTTGGCCACATATGATGATATATTAAACTTGAATATTCG
ACTAC
Found at i:64619069 original size:68 final size:67
Alignment explanation
Indices: 64618997--64619176 Score: 181
Period size: 68 Copynumber: 2.6 Consensus size: 67
64618987 CATCATGTGT
* * *
64618997 ACAAGAGAGCTACGAGATACTATGTAGTAGCTAGGTCACATGTGTGA-T-ACGGGATGTGTC-CC
1 ACAAGAGAGCTACGAGATA-TAT-T-GTAGCTAGGTCACATGTGTGATTCAAGGGAAG-GACACC
64619059 ATGTAG
62 ATGTAG
* * * *
64619065 ACAAGAGAGCTACGGGAGAGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGATAT-ATTGTAGCTAGGTCACATGTGTGATT-CAAGGGAAGGACACC
64619130 ATGTAG
62 ATGTAG
*
64619136 ACAAGAGAGCTACGAGATAAATTG--GCTAGGTCACATGTGTG
1 ACAAGAGAGCTACGAGATATATTGTAGCTAGGTCACATGTGTG
64619177 GTACTAAGTG
Statistics
Matches: 94, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
66 16 0.17
68 36 0.38
69 8 0.09
70 8 0.09
71 26 0.28
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGATATATTGTAGCTAGGTCACATGTGTGATTCAAGGGAAGGACACCATGT
AG
Found at i:64636038 original size:25 final size:25
Alignment explanation
Indices: 64636010--64636088 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
64636000 ACTCGGCCCT
64636010 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
*** *** *
64636035 ATCACAT-TGGCCA-TTAGGCCTT-
1 ATCACATATATACACTTTCACATTC
64636057 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
64636082 ATCACAT
1 ATCACAT
64636089 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:64636137 original size:49 final size:48
Alignment explanation
Indices: 64635960--64636329 Score: 557
Period size: 49 Copynumber: 7.7 Consensus size: 48
64635950 CCCTTCGGGA
* * * *
64635960 CTTATCACAT-TTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64636007 CCTATCACATA-TATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
64636054 CTTATCACATA-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64636101 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64636150 CTTATCACATTTGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64636199 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64636248 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64636297 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA-TTATACACTTTCACATTCATC
64636330 GCGTAGAATC
Statistics
Matches: 305, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 98 0.32
49 206 0.68
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (48 bp):
CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64640587 original size:45 final size:45
Alignment explanation
Indices: 64640535--64640621 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
64640525 TATGTGCTCT
*
64640535 GAACTCATTGATTTGTGGTCTGAGTTCATGATATATGTGACATTC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATTC
*
64640580 GAACTCATTGAGTTGTGGTCTGAGTTCGTGATATATGTGACA
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACA
64640622 CATGTTTTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.38
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATTC
Found at i:64645056 original size:43 final size:43
Alignment explanation
Indices: 64645000--64645116 Score: 132
Period size: 42 Copynumber: 2.7 Consensus size: 43
64644990 ACATATCGTA
* * *
64645000 CAATGCCAATGTCCCAGACTTGGTCTTACAT-GTAATCACATAT
1 CAATGCCACTGTCCCAGACTTGGTCTTAC-TCATAAACACATAT
* *
64645043 CAATGCCACTGTCCCAGA-TAGGGCTTACTCATAAACACATAT
1 CAATGCCACTGTCCCAGACTTGGTCTTACTCATAAACACATAT
* *
64645085 CGATGCCAAC-GTCCCAGACGTGGTCTTACTCA
1 CAATGCC-ACTGTCCCAGACTTGGTCTTACTCA
64645117 CACACATATA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
41 1 0.02
42 32 0.52
43 29 0.47
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (43 bp):
CAATGCCACTGTCCCAGACTTGGTCTTACTCATAAACACATAT
Found at i:64650905 original size:22 final size:22
Alignment explanation
Indices: 64650878--64650922 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
64650868 GCCAAATGTG
64650878 AATATGCTTGGAAAATAAGTCT
1 AATATGCTTGGAAAATAAGTCT
64650900 AATATGCTTGGAAAATAAGTCT
1 AATATGCTTGGAAAATAAGTCT
64650922 A
1 A
64650923 CTAGTTCGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.31
Consensus pattern (22 bp):
AATATGCTTGGAAAATAAGTCT
Found at i:64651043 original size:45 final size:45
Alignment explanation
Indices: 64650982--64651118 Score: 211
Period size: 45 Copynumber: 3.0 Consensus size: 45
64650972 TAGGATTCTG
* * *
64650982 ATATGTGTTTTTGTGTAAGACGACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
* * *
64651027 ATATGTGTTTTCGTGTAAGACCACATCTAGGATGTTGGCATCAAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
*
64651072 ATATGTGTTTTCGTGTAAGACCATGTCTGGGATGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
64651117 AT
1 AT
64651119 GTGGTTACAA
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
Found at i:64652352 original size:16 final size:16
Alignment explanation
Indices: 64652333--64652363 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64652323 CTTCTTCACT
64652333 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
64652349 TACTTACTTACTTAA
1 TACTCACTTACTTAA
64652364 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:64652369 original size:20 final size:20
Alignment explanation
Indices: 64652330--64652369 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
64652320 AAACTTCTTC
* *
64652330 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
64652350 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
64652370 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:64652684 original size:53 final size:53
Alignment explanation
Indices: 64652565--64652808 Score: 232
Period size: 53 Copynumber: 4.6 Consensus size: 53
64652555 CCTACCATTT
* * * * *
64652565 CCATGACTTGTCATGCTCTTACGTGGTATCCTT---TTA-AAACTTACCATTG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAACTTACCAATG
* *
64652614 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTCACCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAACTTACCAATG
* * * * *
64652667 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATT
1 CCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAACTTACCAATG
* * * *
64652722 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTA-CAATTT
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA-CTTACCAA-TG
*
64652776 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCATGCCTTGACATGGTCTTACATGGTATCCTT
64652809 AAACCCTAAT
Statistics
Matches: 161, Mismatches: 22, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
49 29 0.18
52 5 0.03
53 48 0.30
54 38 0.24
55 39 0.24
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (53 bp):
CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAACTTACCAATG
Found at i:64653180 original size:30 final size:30
Alignment explanation
Indices: 64653146--64653204 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
64653136 TCCTTGACCC
64653146 AAACTTTGACAAAATTACA-TTTTTGCCCCT
1 AAACTTTGACAAAATTACACTTTTT-CCCCT
* * *
64653176 AAACTTTTACATATTTACACTTTTTCCCC
1 AAACTTTGACAAAATTACACTTTTTCCCC
64653205 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.41
Consensus pattern (30 bp):
AAACTTTGACAAAATTACACTTTTTCCCCT
Found at i:64653537 original size:18 final size:18
Alignment explanation
Indices: 64653514--64653556 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
64653504 TCGGGACTCC
64653514 AAAAACGTAAAGAACATT
1 AAAAACGTAAAGAACATT
*
64653532 AAAAACATAAAGAACATT
1 AAAAACGTAAAGAACATT
64653550 AAAAACG
1 AAAAACG
64653557 GGGCTTGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.65, C:0.12, G:0.09, T:0.14
Consensus pattern (18 bp):
AAAAACGTAAAGAACATT
Found at i:64653552 original size:10 final size:10
Alignment explanation
Indices: 64653521--64653552 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
64653511 TCCAAAAACG
64653521 TAAAGAACAT
1 TAAAGAACAT
64653531 TAAA-AACA-
1 TAAAGAACAT
64653539 TAAAGAACAT
1 TAAAGAACAT
64653549 TAAA
1 TAAA
64653553 AACGGGGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 4 0.20
9 8 0.40
10 8 0.40
ACGTcount: A:0.66, C:0.09, G:0.06, T:0.19
Consensus pattern (10 bp):
TAAAGAACAT
Found at i:64655949 original size:26 final size:26
Alignment explanation
Indices: 64655919--64655971 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
64655909 TTCTAGAGAG
64655919 TATGATACCGAGATATACCTATTAGA
1 TATGATACCGAGATATACCTATTAGA
64655945 TATGATACCGAGATATACCTATTAGA
1 TATGATACCGAGATATACCTATTAGA
64655971 T
1 T
64655972 TTGTTCTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (26 bp):
TATGATACCGAGATATACCTATTAGA
Found at i:64662297 original size:30 final size:28
Alignment explanation
Indices: 64662261--64662361 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
64662251 GACAAGATTG
* * *
64662261 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATATA
*
64662291 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
64662319 GCACTAAGTGTGCGAGTTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATATA
64662348 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64662362 GATTCACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 26 0.41
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:64669682 original size:28 final size:28
Alignment explanation
Indices: 64669613--64669713 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
64669603 GACAAGATTG
* * * *
64669613 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
64669643 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
64669671 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
64669700 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64669714 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:64669707 original size:29 final size:28
Alignment explanation
Indices: 64669642--64669713 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
64669632 AAAATTGTAC
*
64669642 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
64669670 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
64669699 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64669714 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:64675228 original size:34 final size:34
Alignment explanation
Indices: 64675205--64675271 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
64675195 TTATCAGAGG
*
64675205 CAATATCAATGTGGGCCTTAGCCCATTACAGTAA
1 CAATATCAATATGGGCCTTAGCCCATTACAGTAA
* *
64675239 CAGTATCAGTATGGGCCTTAGCCCAATT-CAGTA
1 CAATATCAATATGGGCCTTAGCCC-ATTACAGTA
64675272 TAGTATCAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 26 0.90
35 3 0.10
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (34 bp):
CAATATCAATATGGGCCTTAGCCCATTACAGTAA
Found at i:64679085 original size:14 final size:14
Alignment explanation
Indices: 64679066--64679093 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
64679056 ATGAGTGGGC
64679066 ATTACATGATAGAG
1 ATTACATGATAGAG
64679080 ATTACATGATAGAG
1 ATTACATGATAGAG
64679094 CTATTGGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (14 bp):
ATTACATGATAGAG
Found at i:64680951 original size:53 final size:52
Alignment explanation
Indices: 64680798--64680952 Score: 166
Period size: 53 Copynumber: 3.0 Consensus size: 52
64680788 TATGTTCCAC
* * * * **
64680798 AAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTAT
1 AAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATGAGTTAT
* * * * * *
64680850 AAGGCAAAGATCCCATGTAAGACCATGCCAAGGCATGACAATGGTGAGTTCAT
1 AAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATGAGTT-AT
* * *
64680903 AAGGCAAGGATACCACGTAGGACCATGTCAAGACATGGCAACGATGAGTT
1 AAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATGAGTT
64680953 TAAAAAGGAA
Statistics
Matches: 81, Mismatches: 21, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
52 38 0.47
53 43 0.53
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.19
Consensus pattern (52 bp):
AAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATGAGTTAT
Found at i:64689619 original size:59 final size:60
Alignment explanation
Indices: 64689523--64689655 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
64689513 GACAAGATTG
* * *
64689523 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
64689583 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
64689642 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64689656 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:64689668 original size:29 final size:29
Alignment explanation
Indices: 64689553--64689655 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
64689543 AAAATTGTAC
*
64689553 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
64689582 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
64689612 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
64689641 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64689656 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:64691575 original size:53 final size:54
Alignment explanation
Indices: 64691397--64691589 Score: 201
Period size: 55 Copynumber: 3.6 Consensus size: 54
64691387 GGGTTTAAGC
* * *
64691397 ATACCAAGTAAGACCATGCCAA-AGCATGGCATTGGTAAGTTCTACAAGGCAAGG
1 ATACCATGTAAGACCATGCCAAGA-CATGGCATTGGTAAGTTCTATAAGGCAAAG
* * * * * *
64691451 AAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAAG
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGT-AAGTTCTATAAGGCAAAG
* * * * * *
64691506 ATCCCATGTAAGACCATGCCAAGGCATGGTAATGGTGAGTTC-ATAAGGCAACG
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAAG
* *
64691559 ATACCACGTAAGACCATGTCAAGACATGGCA
1 ATACCATGTAAGACCATGCCAAGACATGGCA
64691590 ACAGTAAGTT
Statistics
Matches: 111, Mismatches: 26, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
53 36 0.32
54 32 0.29
55 43 0.39
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (54 bp):
ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAAG
Found at i:64697077 original size:28 final size:28
Alignment explanation
Indices: 64697045--64697107 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
64697035 GTGCATGCAA
* *
64697045 TAACAGTCTGGACCTTAGCCCTATATAG
1 TAACAGTCTGGACCTAAGCCCAATATAG
* *
64697073 TAACAGTGTGGGCCTAAGCCCAATATAG
1 TAACAGTCTGGACCTAAGCCCAATATAG
64697101 TAACAGT
1 TAACAGT
64697108 ACAGTGTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (28 bp):
TAACAGTCTGGACCTAAGCCCAATATAG
Found at i:64697170 original size:21 final size:22
Alignment explanation
Indices: 64697131--64697176 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
64697121 ATTATGCATC
*
64697131 CCACCCAAATCCAATCAACACA
1 CCACCCAAATCCAACCAACACA
*
64697153 CCACCCATA-CCAACCAACACA
1 CCACCCAAATCCAACCAACACA
64697174 CCA
1 CCA
64697177 TGTAGGGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.43, C:0.50, G:0.00, T:0.07
Consensus pattern (22 bp):
CCACCCAAATCCAACCAACACA
Found at i:64697303 original size:27 final size:27
Alignment explanation
Indices: 64697263--64697322 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
64697253 AGCTATCAGA
64697263 AACAGTAAGTGTGGCA-AAGCCACCAGT
1 AACAGTAAGTGTGGCATAA-CCACCAGT
* * *
64697290 ATCAGTAATTGTGGTATAACCACCAGT
1 AACAGTAAGTGTGGCATAACCACCAGT
64697317 AACAGT
1 AACAGT
64697323 GAATGTGACA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
AACAGTAAGTGTGGCATAACCACCAGT
Found at i:64697531 original size:27 final size:26
Alignment explanation
Indices: 64697487--64697698 Score: 253
Period size: 27 Copynumber: 7.9 Consensus size: 26
64697477 GGGCTATTCA
* * * *
64697487 TCATTTTTCCGTATAGGGATATCACGG
1 TCATTTTACCCTACAGGG-TATTACGG
* * *
64697514 TTATTTTACCCTACAGGGCCATTACTG
1 TCATTTTACCCTACAGGG-TATTACGG
*
64697541 TCATTTTACCCTACAGGGATATTACGC
1 TCATTTTACCCTACAGGG-TATTACGG
*
64697568 TCATTTTACCCTACAGGGGTATTACGA
1 TCATTTTACCCTACA-GGGTATTACGG
*
64697595 TCATTTTATCCTACAGGGGTATTACGG
1 TCATTTTACCCTACA-GGGTATTACGG
*
64697622 TCATTTTACCCTACAGAGGTATTACGA
1 TCATTTTACCCTACAG-GGTATTACGG
*
64697649 TCATTTTACCCTATAGGGTATTACGG
1 TCATTTTACCCTACAGGGTATTACGG
64697675 TCATTTTACCCTACAGGGTCATTA
1 TCATTTTACCCTACAGGGT-ATTA
64697699 TAGTTATTTT
Statistics
Matches: 161, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 28 0.17
27 130 0.81
28 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGTATTACGG
Found at i:64710245 original size:79 final size:78
Alignment explanation
Indices: 64710145--64710369 Score: 299
Period size: 79 Copynumber: 2.8 Consensus size: 78
64710135 GCTACTCGTT
*
64710145 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
64710210 ATTTAGTGACTCGCA
64 ATTTAGTAACTCACA
* *
64710225 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
64710290 TTTAGTAACTCACA
65 TTTAGTAACTCACA
* * * * *
64710304 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCG
64710368 GA
63 GA
64710370 CATCATTCGA
Statistics
Matches: 129, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 71 0.55
80 48 0.37
81 9 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTCACA
Found at i:64710329 original size:119 final size:120
Alignment explanation
Indices: 64710145--64710369 Score: 314
Period size: 119 Copynumber: 1.9 Consensus size: 120
64710135 GCTACTCGTT
* *
64710145 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
* * * *
64710210 ATTTAGTGAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
66 ATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* **
64710264 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCACACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCC
64710327 GGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64710370 CATCATTCGA
Statistics
Matches: 93, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
118 3 0.03
119 73 0.78
120 17 0.18
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
ATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:64710369 original size:40 final size:40
Alignment explanation
Indices: 64710145--64710369 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
64710135 GCTACTCGTT
* *
64710145 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
64710185 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
64710225 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
64710264 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
64710304 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
64710345 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64710370 CATCATTCGA
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
39 37 0.23
40 112 0.70
41 10 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:64718112 original size:38 final size:38
Alignment explanation
Indices: 64718061--64718189 Score: 177
Period size: 38 Copynumber: 3.4 Consensus size: 38
64718051 GCGTGGTATT
* *
64718061 TGGAACATATCCGGACTTGAGGTCTGCAGGCTACGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
* *
64718099 TGGAACATATCCGGACTTGAGGTCCGCAAGCTATGTAC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
* * *
64718137 TGGAATATATCCAGACTTGAGGTCCGTAGGCTATGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
*
64718175 TGGAAATATATCCGG
1 TGG-AACATATCCGG
64718190 GCCTAAAGTT
Statistics
Matches: 80, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
38 70 0.88
39 10 0.12
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (38 bp):
TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
Found at i:64722876 original size:47 final size:47
Alignment explanation
Indices: 64722825--64722958 Score: 166
Period size: 47 Copynumber: 2.9 Consensus size: 47
64722815 TCGGCTTCGC
* * *
64722825 CACATATATAC-TCTTCCACGTTCATCACATTGGCCATTCTACCATAT
1 CACATATATGCATGTTCCAC-TTCATCACATTGGCCATTCGACCATAT
* *
64722872 CACATATATGCATGTTCGCA-TTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTC-CACTTCATCACATTGGCCATTCGACCATAT
*
64722919 CACATATATGCATGTT-CACATTCAGCACATTGGCCATTCG
1 CACATATATGCATGTTCCAC-TTCATCACATTGGCCATTCG
64722959 GCCTTATCTC
Statistics
Matches: 77, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
45 2 0.03
47 69 0.90
48 4 0.05
49 2 0.03
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
CACATATATGCATGTTCCACTTCATCACATTGGCCATTCGACCATAT
Found at i:64722959 original size:47 final size:47
Alignment explanation
Indices: 64722845--64722991 Score: 204
Period size: 47 Copynumber: 3.1 Consensus size: 47
64722835 CTCTTCCACG
** * *
64722845 TTCATCACATTGGCCATTCTACCATATCACATATATGCATGTTCGCA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
64722892 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * * **
64722939 TTCAGCACATTGGCCATTCGGCCTTATCTCAAATATACACATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
64722986 TTCATC
1 TTCATC
64722992 TCATAAAATC
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:64724908 original size:29 final size:29
Alignment explanation
Indices: 64724875--64724939 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
64724865 GTGACGAGAT
64724875 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64724904 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
64724933 CGGCACT
1 TGGCACT
64724940 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:64732917 original size:29 final size:29
Alignment explanation
Indices: 64732884--64732948 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
64732874 GTGACGAGAT
64732884 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64732913 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
64732942 CGGCACT
1 TGGCACT
64732949 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:64735347 original size:53 final size:53
Alignment explanation
Indices: 64735267--64735375 Score: 218
Period size: 53 Copynumber: 2.1 Consensus size: 53
64735257 AAGTTGTCGA
64735267 ACTATTACAGATCGACTATTCGGTTAGGTAGCTTTTTCTCTTATCCGAATTAG
1 ACTATTACAGATCGACTATTCGGTTAGGTAGCTTTTTCTCTTATCCGAATTAG
64735320 ACTATTACAGATCGACTATTCGGTTAGGTAGCTTTTTCTCTTATCCGAATTAG
1 ACTATTACAGATCGACTATTCGGTTAGGTAGCTTTTTCTCTTATCCGAATTAG
64735373 ACT
1 ACT
64735376 CCCTAAGCTC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (53 bp):
ACTATTACAGATCGACTATTCGGTTAGGTAGCTTTTTCTCTTATCCGAATTAG
Found at i:64747640 original size:28 final size:28
Alignment explanation
Indices: 64747609--64747765 Score: 145
Period size: 28 Copynumber: 5.5 Consensus size: 28
64747599 CTGACTGATT
*
64747609 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
64747637 TCGCACACATAGTGCCTCAATTACTA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
64747666 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
64747694 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCGATTAAAGAAC
* * *
64747723 TGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
64747751 TTGCACACACAGTGC
1 TCGCACACATAGTGC
64747766 CTCATAACTC
Statistics
Matches: 101, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
27 1 0.01
28 55 0.54
29 44 0.44
30 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:64747669 original size:29 final size:29
Alignment explanation
Indices: 64747636--64747737 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 29
64747626 GATTAAAGAA
64747636 CTCGCACACATAGTGCCTCAATTACTAAT
1 CTCGCACACATAGTGCCTCAATTACTAAT
* **
64747665 CTCGCACACATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACTAAT
* *
64747693 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTAAT
*
64747722 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
64747738 TCGGTTGAAG
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 23 0.38
29 38 0.62
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACTAAT
Found at i:64747676 original size:57 final size:57
Alignment explanation
Indices: 64747609--64747769 Score: 250
Period size: 57 Copynumber: 2.8 Consensus size: 57
64747599 CTGACTGATT
* * *
64747609 TCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACTAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTAATC
*
64747666 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTAATC
* * * *
64747723 TGGCACACATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
64747770 TAACTCAAGC
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 96 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTAATC
Found at i:64747842 original size:40 final size:40
Alignment explanation
Indices: 64747797--64748051 Score: 447
Period size: 40 Copynumber: 6.4 Consensus size: 40
64747787 CCTTCGAGGT
* *
64747797 TTAGCCCGGATATATCACTAGCACGAATGCTTTTCAGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
64747837 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
64747877 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
* *
64747917 TTAGCCTGGATATATCACTAGCACGAATGCTCTTCGGACC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
**
64747957 TTAGCCCGGATATATCACTAGCAATAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
64747997 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
64748037 TTAGCCTGGATATAT
1 TTAGCCCGGATATAT
64748052 ATATAACTCT
Statistics
Matches: 204, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 204 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
Found at i:64750772 original size:38 final size:38
Alignment explanation
Indices: 64750716--64750844 Score: 186
Period size: 38 Copynumber: 3.4 Consensus size: 38
64750706 GCGTGGTATT
**
64750716 TGGAACATATCCGGACTTGAGGTCCGCAGGCTACATGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
**
64750754 TGGAACATATCCATACTTGAGGTCCGCAGGCTATGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
* *
64750792 TGGAATATATCTGGACTTGAGGTCCGCAGGCTATGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
*
64750830 TGGAAATATATCCGG
1 TGG-AACATATCCGG
64750845 GCCTAAAGTC
Statistics
Matches: 81, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
38 71 0.88
39 10 0.12
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (38 bp):
TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
Found at i:64760814 original size:28 final size:28
Alignment explanation
Indices: 64760783--64760850 Score: 127
Period size: 28 Copynumber: 2.4 Consensus size: 28
64760773 GGTTATTGAC
64760783 CACTAAGTGTGCGAGTTTAAATATCGAG
1 CACTAAGTGTGCGAGTTTAAATATCGAG
*
64760811 CACTAAGTGTACGAGTTTAAATATCGAG
1 CACTAAGTGTGCGAGTTTAAATATCGAG
64760839 CACTAAGTGTGC
1 CACTAAGTGTGC
64760851 AAACTCAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAAATATCGAG
Found at i:64774178 original size:39 final size:39
Alignment explanation
Indices: 64774134--64774245 Score: 181
Period size: 39 Copynumber: 2.9 Consensus size: 39
64774124 AGACATATTT
* * * *
64774134 CAGCACGTAGACTGCGGACCTTAAGTCTGGATATAATTC
1 CAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTC
64774173 CAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTC
1 CAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTC
64774212 CAGCACATAGCCTGCGGACCCTAAG-CCGGATATA
1 CAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
64774246 CATCACTAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
38 9 0.13
39 60 0.87
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (39 bp):
CAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTC
Found at i:64801343 original size:15 final size:16
Alignment explanation
Indices: 64801323--64801352 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64801313 CGGTGCCTTG
64801323 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
64801338 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
64801353 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Done.