Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 233 of 427
Found at i:65973786 original size:26 final size:26
Alignment explanation
Indices: 65973712--65973797 Score: 115
Period size: 25 Copynumber: 3.4 Consensus size: 26
65973702 TAACTGGAAC
*
65973712 AAAGCCC-TTTCGATAAACTGGGGTA
1 AAAGCCCTTTTCGATAAACTGGGGCA
*
65973737 AAAGCCCTTTT-AATAAACTGGGGCA
1 AAAGCCCTTTTCGATAAACTGGGGCA
*
65973762 AAAGCCCTTTTCGGTAAACTGGGGC-
1 AAAGCCCTTTTCGATAAACTGGGGCA
*
65973787 ATAGCCCTTTT
1 AAAGCCCTTTT
65973798 TGCACTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
25 40 0.74
26 14 0.26
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAGCCCTTTTCGATAAACTGGGGCA
Found at i:65973793 original size:50 final size:47
Alignment explanation
Indices: 65973678--65973797 Score: 123
Period size: 49 Copynumber: 2.4 Consensus size: 47
65973668 ATTATCATAT
* *
65973678 AACTGGAGGCCTAGCCTCTTTTACTAACTGGAACAAAGCCCTTTCGATA
1 AACTGG-GGCATAGCC-CTTTTAATAACTGGAACAAAGCCCTTTCGATA
* * ** *
65973727 AACTGGGGTAAAAGCCCTTTTAATAAACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGG-CATAGCCCTTTTAAT-AACTGGAAC-AAAGCCC-TTTCGATA
65973778 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCATAGCCCTTTT
65973798 TGCACTTCCT
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
48 9 0.16
49 17 0.29
50 17 0.29
51 15 0.26
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (47 bp):
AACTGGGGCATAGCCCTTTTAATAACTGGAACAAAGCCCTTTCGATA
Found at i:65973888 original size:20 final size:20
Alignment explanation
Indices: 65973845--65973891 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
65973835 TTATGAATAC
*
65973845 ATCATTTGCATATCATACAT
1 ATCATGTGCATATCATACAT
65973865 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
65973885 ATCATGT
1 ATCATGT
65973892 ATATCAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:65973955 original size:25 final size:25
Alignment explanation
Indices: 65973927--65973974 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
65973917 ATAATTAAAC
* * *
65973927 CCTAAGGGTATAATGGTCATTTTTA
1 CCTAAGGGCAAAATAGTCATTTTTA
*
65973952 CCTAGGGGCAAAATAGTCATTTT
1 CCTAAGGGCAAAATAGTCATTTT
65973975 CATAATATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (25 bp):
CCTAAGGGCAAAATAGTCATTTTTA
Found at i:65978952 original size:2 final size:2
Alignment explanation
Indices: 65978945--65978973 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
65978935 TGTAAACATG
65978945 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
65978974 TTAAGAACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65982835 original size:40 final size:40
Alignment explanation
Indices: 65982737--65982930 Score: 171
Period size: 40 Copynumber: 4.8 Consensus size: 40
65982727 TCGAATGGTC
* * * *
65982737 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* *
65982778 TCCGGG-TCAATTCCCGAAGGCATTCGTGCGAGTTACCAAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTCGTGCGAGTTA-CTAAA
* * *
65982819 T-CGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
65982858 TCCGGGCTAATTCCCGAAGGCAATT-GTGCGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTA-AA
* * * *
65982899 -CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
65982931 CGCTATATCC
Statistics
Matches: 124, Mismatches: 22, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
39 6 0.05
40 84 0.68
41 34 0.27
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:65982878 original size:80 final size:81
Alignment explanation
Indices: 65982739--65982916 Score: 200
Period size: 80 Copynumber: 2.2 Consensus size: 81
65982729 GAATGGTCTC
* **
65982739 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGC-ATTC
1 CGGGCTAAGTCCCGAAGGCATTCATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT-
65982803 GTGCGAGTTACCAAAAT
65 GTGCGAGTTACCAAAAT
* * * *
65982820 CGGGTTAAGTCCCGAAGGCATTCATGC-GAGTTACTAATTCCGGG-CTAATTCCCGAAGGCAATT
1 CGGGCTAAGTCCCGAAGGCATTCATGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAATT
* * * * *
65982883 GTGCGAATCACTATAAC
65 GTGCGAGTTACCAAAAT
*
65982900 CGGGCTATGTCCCGAAG
1 CGGGCTAAGTCCCGAAG
65982917 ACAATCGAGC
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
79 1 0.01
80 54 0.67
81 26 0.32
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
CGGGCTAAGTCCCGAAGGCATTCATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
TGCGAGTTACCAAAAT
Found at i:65982937 original size:40 final size:40
Alignment explanation
Indices: 65982859--65982942 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
65982849 GTTACTAATT
* * *
65982859 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
65982899 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
65982939 CCGG
1 CCGG
65982943 TTAAATTTCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:65994516 original size:23 final size:22
Alignment explanation
Indices: 65994490--65994543 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
65994480 ATGCATTTCT
*
65994490 ATGATACTTCATGCCAATAATAA
1 ATGATACATCATG-CAATAATAA
* *
65994513 ATGAAATCATCATGCATTAATAA
1 ATGATA-CATCATGCAATAATAA
*
65994536 ATCATACA
1 ATGATACA
65994544 AATATGCATA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 2 0.08
23 17 0.68
24 6 0.24
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (22 bp):
ATGATACATCATGCAATAATAA
Found at i:66005380 original size:23 final size:22
Alignment explanation
Indices: 66005354--66005407 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
66005344 ATGCATTTCT
*
66005354 ATGATACTTCATGCCAATAATAA
1 ATGATACATCATG-CAATAATAA
* *
66005377 ATGAAATCATCATGCATTAATAA
1 ATGATA-CATCATGCAATAATAA
*
66005400 ATCATACA
1 ATGATACA
66005408 AATATGCATA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 2 0.08
23 17 0.68
24 6 0.24
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (22 bp):
ATGATACATCATGCAATAATAA
Found at i:66009692 original size:28 final size:29
Alignment explanation
Indices: 66009594--66009692 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
66009584 TCACAAATTG
* *
66009594 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
66009623 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
66009651 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
66009679 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
66009693 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:66018618 original size:12 final size:11
Alignment explanation
Indices: 66018601--66018634 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
66018591 AGAAATAAAC
66018601 AAAACTTAAAAA
1 AAAAC-TAAAAA
66018613 AAAACTAAACAA
1 AAAACTAAA-AA
66018625 AAAACTAAAA
1 AAAACTAAAA
66018635 CTTATCTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (11 bp):
AAAACTAAAAA
Found at i:66019090 original size:10 final size:9
Alignment explanation
Indices: 66019066--66019141 Score: 57
Period size: 9 Copynumber: 8.2 Consensus size: 9
66019056 TTAAATTTCT
*
66019066 TAAAAATCA
1 TAAAAATTA
66019075 TAAAAATTA
1 TAAAAATTA
*
66019084 TAGAAAATTG
1 TA-AAAATTA
66019094 TACAAAA-TA
1 TA-AAAATTA
*
66019103 TAAAAA-AA
1 TAAAAATTA
*
66019111 TAAATATTAA
1 TAAAAATT-A
66019121 TAGAAAATTA
1 TA-AAAATTA
*
66019131 TAAAAACTA
1 TAAAAATTA
66019140 TA
1 TA
66019142 TGATTACGAA
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
8 10 0.19
9 21 0.39
10 18 0.33
11 5 0.09
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (9 bp):
TAAAAATTA
Found at i:66019242 original size:20 final size:20
Alignment explanation
Indices: 66019213--66019251 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
66019203 TAAAAATATT
66019213 ATAAAAATAT-AAAAGAAATG
1 ATAAAAATATGAAAA-AAATG
*
66019233 ATAAACATATGAAAAAAAT
1 ATAAAAATATGAAAAAAAT
66019252 TAATAAAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.21
Consensus pattern (20 bp):
ATAAAAATATGAAAAAAATG
Found at i:66034819 original size:16 final size:15
Alignment explanation
Indices: 66034798--66034828 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
66034788 GTATTATATC
66034798 AGGCTTTGTGCCTAGT
1 AGGCTTTGTG-CTAGT
66034814 AGGCTTTGTGCTAGT
1 AGGCTTTGTGCTAGT
66034829 GTGTTATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.13, C:0.16, G:0.32, T:0.39
Consensus pattern (15 bp):
AGGCTTTGTGCTAGT
Found at i:66034836 original size:41 final size:41
Alignment explanation
Indices: 66034765--66034844 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
66034755 TCGAGCTCTA
* *
66034765 TGCCTAGTAGGCTTCGTGCCGGTGTATTATATCAGGCTTTG
1 TGCCTAGTAGGCTTCGTGCCAGTGTATTATATCAAGCTTTG
* * *
66034806 TGCCTAGTAGGCTTTGTGCTAGTGTGTTATATCAAGCTT
1 TGCCTAGTAGGCTTCGTGCCAGTGTATTATATCAAGCTT
66034845 CGAGGCTGAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.16, C:0.17, G:0.28, T:0.39
Consensus pattern (41 bp):
TGCCTAGTAGGCTTCGTGCCAGTGTATTATATCAAGCTTTG
Found at i:66043909 original size:43 final size:43
Alignment explanation
Indices: 66043854--66044005 Score: 241
Period size: 43 Copynumber: 3.5 Consensus size: 43
66043844 GCTGGTATTA
* *
66043854 TATTCGGGCCTTCGTGCCTAGCAGGCTTTATGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
* *
66043897 TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
*
66043940 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
* *
66043983 TATTCGGGCCTTTGAGCCTAGCA
1 TATTCGGGCCTTCGTGCCTAGCA
66044006 TGCTATAATG
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 100 1.00
ACGTcount: A:0.13, C:0.24, G:0.31, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
Found at i:66051680 original size:24 final size:25
Alignment explanation
Indices: 66051653--66051700 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
66051643 GAAGAAAATG
66051653 GAGAAAAATG-GA-AGGGAGTGAAGA
1 GAGAAAAATGAGAGA-GGAGTGAAGA
66051677 GAGAAAAATGAGAGAGGAGTGAAG
1 GAGAAAAATGAGAGAGGAGTGAAG
66051701 TGATGTGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
25 11 0.50
26 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.42, T:0.08
Consensus pattern (25 bp):
GAGAAAAATGAGAGAGGAGTGAAGA
Found at i:66052319 original size:27 final size:26
Alignment explanation
Indices: 66052256--66052320 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
66052246 TAATCAAAAT
*
66052256 TTATTTTA-AAATTAAGTAAAATTAA
1 TTATTTTATAATTTAAGTAAAATTAA
** *
66052281 ACATGTTAATAATTTAAGTAAAATTTAA
1 TTAT-TTTATAATTTAAGTAAAA-TTAA
66052309 TTATTTTATAAT
1 TTATTTTATAAT
66052321 ACTTAAATAT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
25 2 0.07
26 3 0.10
27 19 0.63
28 6 0.20
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.46
Consensus pattern (26 bp):
TTATTTTATAATTTAAGTAAAATTAA
Found at i:66056569 original size:40 final size:40
Alignment explanation
Indices: 66056514--66056771 Score: 371
Period size: 40 Copynumber: 6.5 Consensus size: 40
66056504 TGGATGATAA
* * *
66056514 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
66056554 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
66056594 CCAGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
66056634 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66056674 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
66056713 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
66056753 CCGGGCTATGTCTCGAAGG
1 CCGGGCTAAGTCCCGAAGG
66056772 TATTCAAGTG
Statistics
Matches: 199, Mismatches: 13, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
39 38 0.19
40 160 0.80
41 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:66056650 original size:80 final size:80
Alignment explanation
Indices: 66056514--66056771 Score: 421
Period size: 80 Copynumber: 3.2 Consensus size: 80
66056504 TGGATGATAA
* *
66056514 CCGGGCTAAGTCCCGAAGGCATTTGCGCT-AGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAGTTCCGGGCTAAGTCCCGAAGGCATTT
66056578 GTGCGAGTTACCATAT
65 GTGCGAGTTACCATAT
*
66056594 CCAGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
*
66056659 TGTGAGTTACCATAT
66 TGCGAGTTACCATAT
*
66056674 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
*
66056738 TGCGAGTTACTATAT
66 TGCGAGTTACCATAT
* *
66056753 CCGGGCTATGTCTCGAAGG
1 CCGGGCTAAGTCCCGAAGG
66056772 TATTCAAGTG
Statistics
Matches: 166, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
79 76 0.46
80 90 0.54
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACCATAT
Found at i:66056796 original size:119 final size:120
Alignment explanation
Indices: 66056514--66056784 Score: 345
Period size: 119 Copynumber: 2.3 Consensus size: 120
66056504 TGGATGATAA
*** * *
66056514 CCGGGCTAAGTCCCGAAGGCATTTGCGCT-AGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCAAG-TGAGTTACCA-TATCCGGGCTAAGTCCCGAAGGCATT
*
66056577 TGTGCGAGTTACCATATCCAGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAGTT
64 TGTGCGAGTTACCATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
***
66056634 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACCATATCCGGGCTAAGT-CCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCAAGTGAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTTG
* *
66056698 TGCGAGTTACTAGT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
66 TGCGAGTTACCA-TATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
* * *
66056753 CCGGGCTATGTCTCGAAGGTATTCAAGTGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCAAGTGAGT
66056785 AGCTATATCC
Statistics
Matches: 135, Mismatches: 12, Indels: 9
0.87 0.08 0.06
Matches are distributed among these distances:
118 1 0.01
119 89 0.66
120 45 0.33
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTCAAGTGAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACCATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
Found at i:66058858 original size:45 final size:44
Alignment explanation
Indices: 66058800--66058887 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 44
66058790 TGCCAAGCTG
* *
66058800 TGTGATAGGCCGTGT-GCGACACATGGCCTAGGCCATTTTGGGTCA
1 TGTGATAGGCCGTGTAGCCACACA-GG-CTAGGCAATTTTGGGTCA
*
66058845 TGTGCTAGGCCGTGTAGGCCACACAGGCTAGGCAATTTTGGGT
1 TGTGATAGGCCGTGTA-GCCACACAGGCTAGGCAATTTTGGGT
66058888 GTGTAGGCCC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
45 29 0.76
46 2 0.05
47 7 0.18
ACGTcount: A:0.18, C:0.22, G:0.34, T:0.26
Consensus pattern (44 bp):
TGTGATAGGCCGTGTAGCCACACAGGCTAGGCAATTTTGGGTCA
Found at i:66059047 original size:32 final size:32
Alignment explanation
Indices: 66059006--66059100 Score: 172
Period size: 32 Copynumber: 3.0 Consensus size: 32
66058996 AACCTTAAAG
66059006 CATGAAATCTGTCACTCTGTTAGATTGAAAAA
1 CATGAAATCTGTCACTCTGTTAGATTGAAAAA
* *
66059038 CATGAAATCTGTCACTCTGTTGGATTGAAAAG
1 CATGAAATCTGTCACTCTGTTAGATTGAAAAA
66059070 CATGAAATCTGTCACTCTGTTAGATTGAAAA
1 CATGAAATCTGTCACTCTGTTAGATTGAAAA
66059101 TGACATAAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.32
Consensus pattern (32 bp):
CATGAAATCTGTCACTCTGTTAGATTGAAAAA
Found at i:66060911 original size:46 final size:43
Alignment explanation
Indices: 66060859--66060959 Score: 130
Period size: 43 Copynumber: 2.3 Consensus size: 43
66060849 CAAATGTCAT
*
66060859 GACATTAGGATTAACGAGATGTGATTACATGTAAGACCATGTCTGG
1 GACATTAGCATT-A-GA-ATGTGATTACATGTAAGACCATGTCTGG
* * *
66060905 GACATTAGCATTATATTGTGATTACGTGTAAGACCATGTCTGG
1 GACATTAGCATTAGAATGTGATTACATGTAAGACCATGTCTGG
*
66060948 GACATTGGCATT
1 GACATTAGCATT
66060960 GTTATATGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
43 37 0.74
44 1 0.02
45 1 0.02
46 11 0.22
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (43 bp):
GACATTAGCATTAGAATGTGATTACATGTAAGACCATGTCTGG
Found at i:66060970 original size:43 final size:43
Alignment explanation
Indices: 66060880--66061027 Score: 154
Period size: 43 Copynumber: 3.4 Consensus size: 43
66060870 TAACGAGATG
* *
66060880 TGATTACATGTAAGACCATGTCTGGGACATTAGCATT-ATATTG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGATA-TA
* *
66060923 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTTATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGATATA
* * * * * * * * *
66060966 TGATTTCGTATAAGACCCTATCTGGGATAGTGGCCTCGATATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGATATA
*
66061009 TGATAACATGTAAGACCAT
1 TGATTACATGTAAGACCAT
66061028 ATCTAGGATA
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
43 84 0.98
44 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGATATA
Found at i:66062065 original size:15 final size:15
Alignment explanation
Indices: 66062045--66062074 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
66062035 TATTAGTGTC
*
66062045 TTTCCTAACTTAGAG
1 TTTCCTAAATTAGAG
66062060 TTTCCTAAATTAGAG
1 TTTCCTAAATTAGAG
66062075 ACATAGTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (15 bp):
TTTCCTAAATTAGAG
Found at i:66071978 original size:46 final size:46
Alignment explanation
Indices: 66071928--66072100 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
66071918 TGGTTGAGCA
* *
66071928 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
66071974 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
66072021 TTCGAACTTGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
66072067 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66072101 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 57 0.56
47 27 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:66072093 original size:93 final size:93
Alignment explanation
Indices: 66071925--66072095 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
66071915 GGATGGTTGA
* *
66071925 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
66071990 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * * *
66072018 GCATTCGAACTTGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
66072083 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
66072096 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66072362 original size:19 final size:20
Alignment explanation
Indices: 66072325--66072362 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
66072315 ATAAGGTAGT
66072325 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
66072345 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
66072363 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:66075347 original size:40 final size:40
Alignment explanation
Indices: 66075099--66075344 Score: 330
Period size: 40 Copynumber: 6.1 Consensus size: 40
66075089 CGAATGGTGT
* * * * * * *
66075099 CCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
*
66075140 CCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66075180 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66075220 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
66075260 CCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * * *
66075300 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66075340 CCGGG
1 CCGGG
66075345 CTATGTCCAG
Statistics
Matches: 186, Mismatches: 19, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
40 162 0.87
41 24 0.13
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:66080195 original size:27 final size:28
Alignment explanation
Indices: 66080165--66080264 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
66080155 ATAGTGAGTC
66080165 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
66080192 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
66080220 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
66080251 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66080265 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:66080737 original size:2 final size:2
Alignment explanation
Indices: 66080730--66080778 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
66080720 TTACACATGC
66080730 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66080772 AT AT AT A
1 AT AT AT A
66080779 GCCGAATGTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:66081159 original size:13 final size:13
Alignment explanation
Indices: 66081141--66081165 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66081131 CTCATCACCA
66081141 CAACATCAAACAT
1 CAACATCAAACAT
66081154 CAACATCAAACA
1 CAACATCAAACA
66081166 AGAAGGCAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.32, G:0.00, T:0.12
Consensus pattern (13 bp):
CAACATCAAACAT
Found at i:66085573 original size:46 final size:46
Alignment explanation
Indices: 66085523--66085695 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
66085513 TGGTTGAGCA
*
66085523 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
66085569 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
66085616 TTCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
66085662 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66085696 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:66085684 original size:93 final size:93
Alignment explanation
Indices: 66085520--66085690 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
66085510 GGATGGTTGA
* *
66085520 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
66085585 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
66085613 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
66085678 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
66085691 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66085957 original size:19 final size:20
Alignment explanation
Indices: 66085920--66085957 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
66085910 ATAAGGTAGT
66085920 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
66085940 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
66085958 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:66087835 original size:40 final size:40
Alignment explanation
Indices: 66087668--66087835 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
66087658 TCTTCGGAAT
* *
66087668 TTAG-CCGGATATAATCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * * ** * *
66087707 TTAACCCGAATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
66087747 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
66087787 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
66087827 TTAGCCCGG
1 TTAGCCCGG
66087836 GTATCATTCA
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.03
40 101 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:66090659 original size:85 final size:81
Alignment explanation
Indices: 66090570--66090861 Score: 208
Period size: 81 Copynumber: 3.5 Consensus size: 81
66090560 ATTAAATCAA
* * * ** *
66090570 AATAAAATCTATTAAACGACAGGAATAAATCTCGAAATAGAATTATTTGATTAAGTATTCTCGTT
1 AATAAAATCTGTTAAACGACAGGAATAAATCCCGAAACAG-ATT-TTCAATTAA--ATTCTAGTT
* *
66090635 TGGAAATAGAATCAAAATCG
62 TGGAAACAAAATCAAAATCG
* *** * *
66090655 AATAAAATTTGTTAAACGGTGGGAATAAATCCCGAAACAGATTTTCAATTTAATTCTATTTTGGA
1 AATAAAATCTGTTAAACGACAGGAATAAATCCCGAAACAGATTTTCAATTAAATTCTAGTTTGGA
*
66090720 AACAAAATTAAAATCG
66 AACAAAATCAAAATCG
* * * * * *
66090736 AATAAAATCTGTTAAATGGA-GGGTATAAATCCCGAAACAGAGTTTATTTAATTTTAATTTCTCG
1 AATAAAATCTGTTAAA-CGACAGGAATAAATCCCGAAACAGA--TT-TTCAA--TTAAATTCTAG
* * *
66090800 TTCTGGCAACAAAATAAAAATGG
60 TT-TGGAAACAAAATCAAAATCG
** * * * *
66090823 AATAAAATCCATTGAATGGCGGGAATAAATCCCGAAACA
1 AATAAAATCTGTTAAACGACAGGAATAAATCCCGAAACA
66090862 AGTTTTATTT
Statistics
Matches: 166, Mismatches: 33, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
81 59 0.36
82 1 0.01
83 8 0.05
84 7 0.04
85 33 0.20
86 10 0.06
87 48 0.29
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (81 bp):
AATAAAATCTGTTAAACGACAGGAATAAATCCCGAAACAGATTTTCAATTAAATTCTAGTTTGGA
AACAAAATCAAAATCG
Found at i:66090965 original size:87 final size:85
Alignment explanation
Indices: 66090570--66090966 Score: 358
Period size: 87 Copynumber: 4.7 Consensus size: 85
66090560 ATTAAATCAA
* * * * * * **
66090570 AATAAAATCTATTAAAC-GACAGGAATAAATCTCGAAATAGAATTATTTGATTAAGT-ATTCTCG
1 AATAAAATCTGTTAAACGGA-GGGAATAAATCCCGAAACAGATTTATTTAATT-TTTAATTCTCG
* * *
66090633 TTTGGAAATAGAATCAAAATCG
64 TTTGGAAACAAAATAAAAATCG
* * * **
66090655 AATAAAATTTGTTAAACGGTGGGAATAAATCCCGAAACAGA-TT-TTCAA--TTTAATTCTATTT
1 AATAAAATCTGTTAAACGGAGGGAATAAATCCCGAAACAGATTTATTTAATTTTTAATTCTCGTT
*
66090716 TGGAAACAAAATTAAAATCG
66 TGGAAACAAAATAAAAATCG
* *
66090736 AATAAAATCTGTTAAATGGAGGGTATAAATCCCGAAACAGAGTTTATTTAA-TTTTAATTTCTCG
1 AATAAAATCTGTTAAACGGAGGGAATAAATCCCGAAACAGA-TTTATTTAATTTTTAA-TTCTCG
* *
66090800 TTCTGGCAACAAAATAAAAATGG
64 TT-TGGAAACAAAATAAAAATCG
** * * * * *
66090823 AATAAAATCCATTGAATGGCGGGAATAAATCCCGAAACAAGTTTTATTTAATTTTTAATACTCGT
1 AATAAAATCTGTTAAACGGAGGGAATAAATCCCGAAAC-AGATTTATTTAATTTTTAATTCTCGT
* * **
66090888 TTGGAAATATAATAAAAAAGG
65 TTGGAAACAAAATAAAAATCG
* * *
66090909 AAATAAAATCTGTTGAACGGAGGAAATAAATCCCGAAATAGATTTTATTTAATTTTTA
1 -AATAAAATCTGTTAAACGGAGGGAATAAATCCCGAAACAGA-TTTATTTAATTTTTA
66090967 TTATCAAATG
Statistics
Matches: 257, Mismatches: 43, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
80 1 0.00
81 61 0.24
83 5 0.02
84 6 0.02
85 38 0.15
86 25 0.10
87 113 0.44
88 8 0.03
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.32
Consensus pattern (85 bp):
AATAAAATCTGTTAAACGGAGGGAATAAATCCCGAAACAGATTTATTTAATTTTTAATTCTCGTT
TGGAAACAAAATAAAAATCG
Found at i:66091109 original size:20 final size:21
Alignment explanation
Indices: 66091084--66091123 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
66091074 GTTAACGAAA
66091084 AAATATAAATATA-AATAAAG
1 AAATATAAATATATAATAAAG
**
66091104 AAATATTTATATATAATAAA
1 AAATATAAATATATAATAAA
66091124 ATAAATTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (21 bp):
AAATATAAATATATAATAAAG
Found at i:66092607 original size:46 final size:45
Alignment explanation
Indices: 66092537--66092665 Score: 172
Period size: 46 Copynumber: 2.8 Consensus size: 45
66092527 AGGTTATTTG
66092537 TGTGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCT-CGAGA
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTACGAGA
* *
66092581 TGTAAGCCAGGGTAAGACATGTCTGGGACATGCATCGG-CTACGAGA
1 TGT--GCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTACGAGA
* *
66092627 TGTGTCAGTGTAAGACCATGACTGGGACATGGCATTGGC
1 TGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGC
66092666 ACGGATATGT
Statistics
Matches: 73, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
44 13 0.18
45 15 0.21
46 45 0.62
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.23
Consensus pattern (45 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTACGAGA
Found at i:66092859 original size:14 final size:15
Alignment explanation
Indices: 66092819--66092859 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
66092809 TATTTAAAAA
66092819 TTATTTTCTGTG--T
1 TTATTTTCTGTGAAT
*
66092832 TTATTTTGTGTGAAT
1 TTATTTTCTGTGAAT
66092847 TTA-TTTCTGTGAA
1 TTATTTTCTGTGAA
66092860 ATTTTCATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 11 0.46
14 9 0.38
15 4 0.17
ACGTcount: A:0.17, C:0.05, G:0.17, T:0.61
Consensus pattern (15 bp):
TTATTTTCTGTGAAT
Found at i:66093161 original size:44 final size:44
Alignment explanation
Indices: 66093106--66093194 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
66093096 TATAACATAA
66093106 AACATAAAAATATTAAAACCATTTTATGGTCATCTTTTATATTG
1 AACATAAAAATATTAAAACCATTTTATGGTCATCTTTTATATTG
66093150 AACATAAAAATATTAAAACCATTTTATGGTCATCTTTTATATTG
1 AACATAAAAATATTAAAACCATTTTATGGTCATCTTTTATATTG
66093194 A
1 A
66093195 CCGTAACTTC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (44 bp):
AACATAAAAATATTAAAACCATTTTATGGTCATCTTTTATATTG
Found at i:66099490 original size:30 final size:29
Alignment explanation
Indices: 66099454--66099528 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 29
66099444 TTTATAGCCT
*
66099454 TTAAAAATCAATTAAGCCATCTTAAAATAA
1 TTAAAAATCAATTAAGCCATCCTAAAA-AA
* * *
66099484 TTAAAAATCTATTAAACCCTCCTAAAAAA
1 TTAAAAATCAATTAAGCCATCCTAAAAAA
66099513 -TAAAATATCAATTAAG
1 TTAAAA-ATCAATTAAG
66099529 TTTTACCCGC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
28 5 0.13
29 10 0.26
30 23 0.61
ACGTcount: A:0.53, C:0.15, G:0.03, T:0.29
Consensus pattern (29 bp):
TTAAAAATCAATTAAGCCATCCTAAAAAA
Found at i:66101107 original size:25 final size:26
Alignment explanation
Indices: 66101058--66101112 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
66101048 AATGATGACG
66101058 AAAACAATAATAATAGCAATAGTA-T
1 AAAACAATAATAATAGCAATAGTATT
* *
66101083 AAAACGATAATAATA-CATATGGTATT
1 AAAACAATAATAATAGCA-ATAGTATT
66101109 AAAA
1 AAAA
66101113 TATATATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 2 0.08
25 19 0.73
26 5 0.19
ACGTcount: A:0.58, C:0.07, G:0.09, T:0.25
Consensus pattern (26 bp):
AAAACAATAATAATAGCAATAGTATT
Found at i:66103294 original size:16 final size:18
Alignment explanation
Indices: 66103262--66103295 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
66103252 CTCATATAAA
66103262 TTTTGATTATAATTACTT
1 TTTTGATTATAATTACTT
66103280 TTTTGA-TATAA-TACTT
1 TTTTGATTATAATTACTT
66103296 AAAATTACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 5 0.31
18 6 0.38
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (18 bp):
TTTTGATTATAATTACTT
Found at i:66104994 original size:13 final size:14
Alignment explanation
Indices: 66104976--66105006 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
66104966 ATGTATGAAT
66104976 ATATACATATAT-A
1 ATATACATATATCA
66104989 ATATACATATATCA
1 ATATACATATATCA
66105003 ATAT
1 ATAT
66105007 TGATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (14 bp):
ATATACATATATCA
Found at i:66105594 original size:20 final size:20
Alignment explanation
Indices: 66105569--66105612 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
66105559 AGAAGGGGAA
66105569 GGAGAGAAAAGA-GGGAGCGG
1 GGAGAGAAAAGAGGGGAG-GG
*
66105589 GGAGAGAAGAGAGGGGAGGG
1 GGAGAGAAAAGAGGGGAGGG
66105609 GGAG
1 GGAG
66105613 CTCCGGCCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.36, C:0.02, G:0.61, T:0.00
Consensus pattern (20 bp):
GGAGAGAAAAGAGGGGAGGG
Found at i:66106951 original size:13 final size:13
Alignment explanation
Indices: 66106933--66106957 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66106923 TTTGAAACAT
66106933 AGAAATTAAAAGC
1 AGAAATTAAAAGC
66106946 AGAAATTAAAAG
1 AGAAATTAAAAG
66106958 GCTCAACTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.16, T:0.16
Consensus pattern (13 bp):
AGAAATTAAAAGC
Found at i:66107090 original size:67 final size:66
Alignment explanation
Indices: 66106889--66107145 Score: 306
Period size: 67 Copynumber: 3.8 Consensus size: 66
66106879 AGGTGAACTG
** * * * * *
66106889 AGGCTCAACTCATTTTTCGCAATATGGGTTGATTTTTGAAACATAGAAATT-AAAAGC-AGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAA-ATAGAATTTGAAAAACGA-AAAT
66106952 TAAA
64 T-AA
* *
66106956 AGGCTCAACTCACCTCTCGCAATATGAGTTAATAATTTGAAAAGTAG-ATTTCGAAAAACGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAT-CTTTGAAAA-TAGAATTT-GAAAAACGAAAA
66107020 TTAA
63 TTAA
*
66107024 AGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAAAGTAGATTTTGAAAAACGAAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAAA-TAGAATTTGAAAAACGAAAATT
66107089 AA
65 AA
* *
66107091 AGGCTCAACTCACCTCTCGCAATATGAATT-AACTTTTGAAAATAGAATTTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATC-TTTGAAAATAGAATTTGAAAA
66107146 TACCTTAGCG
Statistics
Matches: 169, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
66 14 0.08
67 97 0.57
68 47 0.28
69 10 0.06
70 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (66 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAAATAGAATTTGAAAAACGAAAATTA
A
Found at i:66107245 original size:74 final size:71
Alignment explanation
Indices: 66107091--66107488 Score: 442
Period size: 74 Copynumber: 5.5 Consensus size: 71
66107081 CGAAAATTAA
* * * *
66107091 AGGCTCAACTCACCTCTCGCAATATGAATTAACTTTT-GAAAATAGAATTTGAAAATACCTTAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTAGAAAATAGAA-TTGAAATTACCTCAGC
* *
66107155 GTGCCGCA
64 GTGCCCCG
* *
66107163 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGA--AAATA-GAATTGAAATTACCTCAG
66107228 CGTGCCCCG
63 CGTGCCCCG
* * * * * *
66107237 AGGTTCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAACATA-ATTTGAAATTACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGAAA-ATAGAATTGAAATTACCTCAGCG
* **
66107301 TGTCTTG
65 TGCCCCG
*
66107308 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGA--AAATA-GAATTGAAATTACCTCAG
66107373 CGTGCCCCG
63 CGTGCCCCG
* * * * *
66107382 AGGTTCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAACATA-AATTGAAATTACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGAAA-ATAGAATTGAAATTACCTCAGCG
* **
66107446 TGTCTTG
65 TGCCCCG
*
66107453 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
66107489 CTTGGAAAAC
Statistics
Matches: 276, Mismatches: 40, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
71 114 0.41
72 36 0.13
73 7 0.03
74 116 0.42
75 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.32
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGAAAATAGAATTGAAATTACCTCAGCGT
GCCCCG
Found at i:66107326 original size:145 final size:152
Alignment explanation
Indices: 66107091--66107756 Score: 813
Period size: 160 Copynumber: 4.4 Consensus size: 152
66107081 CGAAAATTAA
* * * * * * *
66107091 AGGCTCAACTCACCTCTCGCAATATGAATTAACTTTTGAAA-ATAGAATTTGAAAATACCTTAGC
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATA-AA-TTGAAATTACCTCAAC
* *** * * * *
66107155 GTGCCGCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TT-TT-A-G-ATTTAATAG-G-AA
64 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTCTTAATGAATTAAAAAGAGAAA
*
66107213 TTGAAATTACCTCAGCGTGCCCCG
129 TTGAAAATACCTCAGCGTGCCCCG
* * *
66107237 AGGTTCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAACATAATTTGAAATTACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGT
* * *
66107302 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT-TT-A-G-ATTTAATAG-G-AATT
66 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTCTTAATGAATTAAAAAGAGAAATT
*
66107360 GAAATTACCTCAGCGTGCCCCG
131 GAAAATACCTCAGCGTGCCCCG
* *
66107382 AGGTTCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGT
66107447 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAG
66 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTCTT-----A-ATGAATTAAAAAG
*
66107512 CAGAAATTGAAAATACCTCAGCGTGCCCTG
124 -AGAAATTGAAAATACCTCAGCGTGCCCCG
*
66107542 AGGCTCAACTCGCTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGT
66107607 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAG
66 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTCTT-----A-ATGAATTAAAAAG
*
66107672 CAGAAATTGAAAATACCTCAGCGTGCCCTG
124 -AGAAATTGAAAATACCTCAGCGTGCCCCG
66107702 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATT
66107757 GGAAGAACAG
Statistics
Matches: 479, Mismatches: 25, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
145 191 0.40
146 36 0.08
147 5 0.01
148 2 0.00
155 1 0.00
156 1 0.00
157 7 0.01
159 1 0.00
160 235 0.49
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (152 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGT
GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTCTTAATGAATTAAAAAGAGAAATT
GAAAATACCTCAGCGTGCCCCG
Found at i:66107631 original size:71 final size:71
Alignment explanation
Indices: 66107515--66107648 Score: 205
Period size: 71 Copynumber: 1.9 Consensus size: 71
66107505 TAAAAAGCAG
* * * *
66107515 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCGCTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
66107580 AAACAT
66 AAACAT
* * *
66107586 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
66107649 CTTGGAAAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 56 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:66107800 original size:92 final size:87
Alignment explanation
Indices: 66107581--66107999 Score: 475
Period size: 92 Copynumber: 4.8 Consensus size: 87
66107571 TGATTTTTGA
* * * * *
66107581 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
66107646 TTTCTTGGAAAACATGAATTAAAAAG
65 TTT-TT-G-AAACATAAATTAAAAAG
* *
66107672 --CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66107735 TTTTGAAACATAAATTGAAATTGGAAG
66 TTTTGAAACATAAATT-AAA----AAG
66107762 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
66107827 TTTTG----A-AAAGT--AGA-
66 TTTTGAAACATAAATTAAAAAG
*
66107841 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
66107906 TCTTTTGAAACATAAATT-GAAAG
65 T-TTTTGAAACATAAATTAAAAAG
* * * * *
66107929 AACAGAAATTGGAAATACCTCAGTATGTGAACC-GAGGTTCAACTCATCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAATACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
66107993 GATTTTT
63 GATTTTT
66108000 TTTTTTTGAA
Statistics
Matches: 288, Mismatches: 21, Indels: 41
0.82 0.06 0.12
Matches are distributed among these distances:
79 63 0.22
80 2 0.01
81 5 0.02
84 1 0.00
85 11 0.04
86 8 0.03
87 8 0.03
88 29 0.10
89 56 0.19
90 37 0.13
91 2 0.01
92 66 0.23
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (87 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAACATAAATTAAAAAG
Found at i:66107893 original size:79 final size:80
Alignment explanation
Indices: 66107762--66108086 Score: 365
Period size: 79 Copynumber: 4.0 Consensus size: 80
66107752 AAATTGGAAG
*
66107762 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66107827 TTTTGAAAAGT-AGA
66 TTTTGAAAAGTAAGA
66107841 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
66107906 TCTTTTGAAACA-TAAATTGAAA
65 T-TTTTGAAA-AGT-AA--G--A
* * * *
66107928 GAACAGAAATTGGAAA-TACCTCAGTATGTGAACC-GAGGTTCAACTCATCTCTCGCAATATGAG
1 -AACAGAAATT-GAAATTACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAG
******
66107991 TTGATTTTTTTTTTTTGAA-A
61 TTGATTTTTGAAAAGT-AAGA
* *
66108011 AACAGAAATTAAAATTACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66108075 TTTTGAAAAGTA
66 TTTTGAAAAGTA
66108087 TAAATTAAAA
Statistics
Matches: 208, Mismatches: 21, Indels: 35
0.79 0.08 0.13
Matches are distributed among these distances:
78 3 0.01
79 100 0.48
80 4 0.02
81 12 0.06
82 19 0.09
83 2 0.01
85 1 0.00
87 1 0.00
88 25 0.12
89 5 0.02
90 34 0.16
91 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (80 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAAGTAAGA
Found at i:66108047 original size:169 final size:164
Alignment explanation
Indices: 66107581--66108109 Score: 582
Period size: 169 Copynumber: 3.1 Consensus size: 164
66107571 TGATTTTTGA
* * * * * *
66107581 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
66107646 TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAA-TACCTCAGCGTGCCCTGAGGCTCAA
65 TTT-TT-G-AAA-A-G---TAAAAA-CAGAAATT-AAAATTACCTCAGCGTGCCC-GAGGCTCAA
*
66107710 CTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTGGAAG
119 CTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTG--A----AAG
*
66107762 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
66107827 TTTTGAAAAGTAGAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
66 TTTTGAAAAGTAAAAACAGAAATTAAAATTACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCG
66107892 CAATATGAGTTGATTCTTTTGAAACATAAATTGAAAG
130 CAATATGAGTTGA-T-TTTTGAAACATAAATTGAAAG
* * * *
66107929 AACAGAAATTGGAAATACCTCAGTATGTGAACC-GAGGTTCAACTCATCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAATACCTCAG--CGTG-ACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
******
66107993 GATTTTTTTTTTTTGAAAAACAGAAATTAAAATTACCTCAGCGTGCCCGAGGCTCAACTCACCTC
63 GATTTTTGAAAAGT-AAAAACAGAAATTAAAATTACCTCAGCGTGCCCGAGGCTCAACTCACCTC
*
66108058 TCGCAATATGAGTTGATTTTTGAAAAGTATAAATT-AAA-
127 TCGCAATATGAGTTGATTTTTG-AAA-CATAAATTGAAAG
66108096 AACAGAAATT-AAAA
1 AACAGAAATTGAAAA
66108110 GACTCAACTC
Statistics
Matches: 313, Mismatches: 25, Indels: 35
0.84 0.07 0.09
Matches are distributed among these distances:
166 3 0.01
167 40 0.13
168 7 0.02
169 82 0.26
170 33 0.11
171 53 0.17
172 8 0.03
173 17 0.05
175 1 0.00
176 1 0.00
177 3 0.01
178 1 0.00
179 2 0.01
180 3 0.01
181 59 0.19
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (164 bp):
AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAAGTAAAAACAGAAATTAAAATTACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTGAAACATAAATTGAAAG
Found at i:66123886 original size:28 final size:29
Alignment explanation
Indices: 66123819--66123919 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
66123809 ATAGTGAATC
*
66123819 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
66123848 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
66123876 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
66123906 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66123920 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:66130588 original size:15 final size:16
Alignment explanation
Indices: 66130570--66130603 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
66130560 TTTAAAGACA
66130570 TTTTTTTTCAAAGA-T
1 TTTTTTTTCAAAGAGT
*
66130585 TTTTTTTTCTAAGAGT
1 TTTTTTTTCAAAGAGT
66130601 TTT
1 TTT
66130604 ACAAATCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.21, C:0.06, G:0.09, T:0.65
Consensus pattern (16 bp):
TTTTTTTTCAAAGAGT
Found at i:66131004 original size:19 final size:19
Alignment explanation
Indices: 66130977--66131024 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
66130967 ATTTTTTTCA
*
66130977 ATAAAAATACA-AAAGATT
1 ATAAAAATACATAAAAATT
*
66130995 TTATAAAATACATAAAAATT
1 ATA-AAAATACATAAAAATT
66131015 ATAAAAATAC
1 ATAAAAATAC
66131025 TTATAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 2 0.08
19 15 0.60
20 8 0.32
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (19 bp):
ATAAAAATACATAAAAATT
Found at i:66133082 original size:24 final size:24
Alignment explanation
Indices: 66133055--66133116 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
66133045 TCACAAAGTT
* * *
66133055 CACTATCACTATCATCATAGTTTG
1 CACTATTACTATCATCATAGCTCG
*
66133079 CACTATTATTATCATCATAGCTCG
1 CACTATTACTATCATCATAGCTCG
66133103 CACTATTACTATCA
1 CACTATTACTATCA
66133117 ACTTTTTCGA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (24 bp):
CACTATTACTATCATCATAGCTCG
Found at i:66136335 original size:16 final size:16
Alignment explanation
Indices: 66136314--66136364 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
66136304 TGTCTGTGGG
66136314 TTTTTAAAAATATATT
1 TTTTTAAAAATATATT
66136330 TTTTTATAAAAT-TATT
1 TTTTTA-AAAATATATT
* *
66136346 GTTTTAATAAATAAATT
1 TTTTTAA-AAATATATT
66136363 TT
1 TT
66136365 ATGTTAGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 1 0.03
16 19 0.66
17 9 0.31
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
TTTTTAAAAATATATT
Found at i:66136340 original size:17 final size:17
Alignment explanation
Indices: 66136313--66136356 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
66136303 TTGTCTGTGG
66136313 GTTTTTA-AAAATATATT
1 GTTTTTATAAAAT-TATT
66136330 -TTTTTATAAAATTATT
1 GTTTTTATAAAATTATT
*
66136346 GTTTTAATAAA
1 GTTTTTATAAA
66136357 TAAATTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
GTTTTTATAAAATTATT
Found at i:66138928 original size:24 final size:24
Alignment explanation
Indices: 66138896--66138941 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
66138886 AATAAATTTC
66138896 TATAGTTTT-TTATACTTTAATATA
1 TATAGTTTTATT-TACTTTAATATA
* *
66138920 TATATTTTTATTTATTTTAATA
1 TATAGTTTTATTTACTTTAATA
66138942 CTTTTATCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 17 0.89
25 2 0.11
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (24 bp):
TATAGTTTTATTTACTTTAATATA
Found at i:66142624 original size:171 final size:169
Alignment explanation
Indices: 66142217--66142677 Score: 599
Period size: 166 Copynumber: 2.7 Consensus size: 169
66142207 AAACAAATGA
* * * * * *
66142217 AACTTAATAGGGACTAATTTGACTA-TTTTTTAGTAAAGGATGAAAAATGTAATTTGATTCCTAG
1 AACTTAATAAGGACTAATTTGCCTATTTTTTTAGTAAAAGATGAAAAATGAAATCTAATTCCTAG
* * * * *
66142281 TATAAAGGCCTATATGTTACTTTTGTCTAATTCTACTATCCTTCAATTCCATGTCACTTACATAA
66 TATAAGGGCCTATATGGTACTTTTGTCTAATCCTACCATCCTTAAATTCCATGTCACTTACATAA
*
66142346 TTTTTTTTTTAACAAAAAGGCGAGTTTGATCTTTGATCT
131 TTTTTTTTCTAACAAAAAGGCGAGTTTGATCTTTGATCT
66142385 AACTT-AT-AGGACTAATTTGCCT-TTTTTTTAGTAAAAGATGAAAAATGAAATCTAATTCCTAG
1 AACTTAATAAGGACTAATTTGCCTATTTTTTTAGTAAAAGATGAAAAATGAAATCTAATTCCTAG
* * *
66142447 TATAAGGGCCTATACGGTACTTTTATGTAATCCTACCATCCTTAAAATATTCCATGTCACTTACA
66 TATAAGGGCCTATATGGTACTTTTGTCTAATCCTACCATCCTT--AA-ATTCCATGTCACTTACA
* * * *
66142512 TAA-TTTTTTTCTGACAAAAGGGTGAGTTTGCTCTTTGATCT
128 TAATTTTTTTTCTAACAAAAAGGCGAGTTTGATCTTTGATCT
* * * * *
66142553 AACTTAATAAGAACTAATTTGCCTATTTTTTTAGTAAAAGAGGCAAAATGCAATCTAATTCCTAA
1 AACTTAATAAGGACTAATTTGCCTATTTTTTTAGTAAAAGATGAAAAATGAAATCTAATTCCTAG
* * * *
66142618 TATAAGGACCTTTATGGTACTTTTGTCTAACCCTACTCATCCTTTAATTCCATGTCACTT
66 TATAAGGGCCTATATGGTACTTTTGTCTAATCCTAC-CATCCTTAAATTCCATGTCACTT
66142678 GCACTTTTTT
Statistics
Matches: 254, Mismatches: 31, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
166 84 0.33
167 2 0.01
168 44 0.17
169 36 0.14
170 15 0.06
171 66 0.26
172 7 0.03
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (169 bp):
AACTTAATAAGGACTAATTTGCCTATTTTTTTAGTAAAAGATGAAAAATGAAATCTAATTCCTAG
TATAAGGGCCTATATGGTACTTTTGTCTAATCCTACCATCCTTAAATTCCATGTCACTTACATAA
TTTTTTTTCTAACAAAAAGGCGAGTTTGATCTTTGATCT
Found at i:66145078 original size:118 final size:118
Alignment explanation
Indices: 66144870--66145106 Score: 411
Period size: 118 Copynumber: 2.0 Consensus size: 118
66144860 CGATTACAAG
* *
66144870 TCCAATACATTAATATTATTTTGCACAGGACCTCACCTATAAAGAGCCCCTAAAACAATGAAGAG
1 TCCAACACATTAATATTATTCTGCACAGGACCTCACCTATAAAGAGCCCCTAAAACAATGAAGAG
* *
66144935 AGGACCCGCTCTTGAATATACTTGCCTATACTTTGCCAACTTACCTTCAGCAC
66 AGGACCAGCTCTTGAATATACTTGCCTATACTCTGCCAACTTACCTTCAGCAC
* *
66144988 TCCAACACATTAATATTATTCTGCACAGGACCTCACCTATAAAGAGCCCCTAAAACGATGAAGTG
1 TCCAACACATTAATATTATTCTGCACAGGACCTCACCTATAAAGAGCCCCTAAAACAATGAAGAG
*
66145053 AGGACTAGCTCTTGAATATACTTGCCTATACTCTGCCAACTTACCTTCAGCAC
66 AGGACCAGCTCTTGAATATACTTGCCTATACTCTGCCAACTTACCTTCAGCAC
66145106 T
1 T
66145107 TAGTCTTCAT
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
118 112 1.00
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.27
Consensus pattern (118 bp):
TCCAACACATTAATATTATTCTGCACAGGACCTCACCTATAAAGAGCCCCTAAAACAATGAAGAG
AGGACCAGCTCTTGAATATACTTGCCTATACTCTGCCAACTTACCTTCAGCAC
Found at i:66149849 original size:2 final size:2
Alignment explanation
Indices: 66149838--66149869 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
66149828 TTACAACACA
66149838 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
66149870 CAAGCCTAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66151919 original size:23 final size:23
Alignment explanation
Indices: 66151891--66151937 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
66151881 ATGTTCGTTT
*
66151891 ATTTAATCTTCAT-GAACATGTTC
1 ATTTAA-CTTAATCGAACATGTTC
*
66151914 ATTTAACTTAATCGAACATTTTC
1 ATTTAACTTAATCGAACATGTTC
66151937 A
1 A
66151938 CGAACATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (23 bp):
ATTTAACTTAATCGAACATGTTC
Found at i:66151947 original size:23 final size:23
Alignment explanation
Indices: 66151921--66151990 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
66151911 TTCATTTAAC
66151921 TTAATCGAACATTTTCACGAACA
1 TTAATCGAACATTTTCACGAACA
* *
66151944 TTAAACGAACATGTTT-ATGAACA
1 TTAATCGAACAT-TTTCACGAACA
* * *
66151967 TATAATTGAATATGTTCACGAACA
1 T-TAATCGAACATTTTCACGAACA
66151991 ATGTTAATAA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
23 20 0.54
24 17 0.46
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.31
Consensus pattern (23 bp):
TTAATCGAACATTTTCACGAACA
Found at i:66151989 original size:24 final size:23
Alignment explanation
Indices: 66151904--66151990 Score: 68
Period size: 23 Copynumber: 3.7 Consensus size: 23
66151894 TAATCTTCAT
** *
66151904 GAACATGTTCATTTAAC-TTAATC
1 GAACATGTTCA-CGAACATTAAAC
*
66151927 GAACATTTTCACGAACATTAAAC
1 GAACATGTTCACGAACATTAAAC
* * **
66151950 GAACATGTTTATGAACATATAATT
1 GAACATGTTCACGAACAT-TAAAC
*
66151974 GAATATGTTCACGAACA
1 GAACATGTTCACGAACA
66151991 ATGTTAATAA
Statistics
Matches: 50, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
22 3 0.06
23 30 0.60
24 17 0.34
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.32
Consensus pattern (23 bp):
GAACATGTTCACGAACATTAAAC
Found at i:66154020 original size:11 final size:11
Alignment explanation
Indices: 66154006--66154081 Score: 52
Period size: 11 Copynumber: 7.0 Consensus size: 11
66153996 CTTTTGACAC
*
66154006 CTTTTTGTTTT
1 CTTTTTATTTT
*
66154017 CTTTTTCTTTT
1 CTTTTTATTTT
*
66154028 ATTTTTATATTT
1 CTTTTTAT-TTT
*
66154040 C-TTTTGTTTT
1 CTTTTTATTTT
66154050 -TTTTTATTTT
1 CTTTTTATTTT
*
66154060 CATATTT-TTTT
1 C-TTTTTATTTT
66154071 -TTTTTACTTTT
1 CTTTTTA-TTTT
66154082 TTATTTTGTT
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 4 0.08
10 11 0.22
11 29 0.57
12 7 0.14
ACGTcount: A:0.09, C:0.08, G:0.03, T:0.80
Consensus pattern (11 bp):
CTTTTTATTTT
Found at i:66154049 original size:27 final size:26
Alignment explanation
Indices: 66154019--66154081 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 26
66154009 TTTGTTTTCT
*
66154019 TTTTCTTTTATTTTTATATTTCTTTTG
1 TTTTCTTTTATTTTCATATTT-TTTTG
* *
66154046 TTTTTTTTTATTTTCATATTTTTTTT
1 TTTTCTTTTATTTTCATATTTTTTTG
66154072 TTTTACTTTT
1 TTTT-CTTTT
66154082 TTATTTTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.26
27 23 0.74
ACGTcount: A:0.11, C:0.06, G:0.02, T:0.81
Consensus pattern (26 bp):
TTTTCTTTTATTTTCATATTTTTTTG
Found at i:66154088 original size:21 final size:21
Alignment explanation
Indices: 66154024--66154081 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 21
66154014 TTTCTTTTTC
*
66154024 TTTTATTTTTATATTTC-T-TT
1 TTTTTTTTTTAT-TTTCATATT
66154044 TGTTTTTTTTTATTTTCATATT
1 T-TTTTTTTTTATTTTCATATT
66154066 TTTTTTTTTTACTTTT
1 TTTTTTTTTTA-TTTT
66154082 TTATTTTGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 5 0.15
21 21 0.64
22 7 0.21
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.81
Consensus pattern (21 bp):
TTTTTTTTTTATTTTCATATT
Found at i:66155063 original size:28 final size:28
Alignment explanation
Indices: 66155032--66155092 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
66155022 AGATAAACCA
66155032 ATCATAATTAAAAAAATATATT-TATTAT
1 ATCATAATT-AAAAAATATATTATATTAT
66155060 ATCATAATTAAAAAATATATTATATTAT
1 ATCATAATTAAAAAATATATTATATTAT
66155088 ATCAT
1 ATCAT
66155093 TTTAAAGTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 12 0.38
28 20 0.62
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (28 bp):
ATCATAATTAAAAAATATATTATATTAT
Found at i:66155156 original size:9 final size:8
Alignment explanation
Indices: 66155108--66155179 Score: 54
Period size: 9 Copynumber: 8.4 Consensus size: 8
66155098 AGTTAATAAT
66155108 AAAAAATAA
1 AAAAAAT-A
66155117 AACAAAATA
1 AA-AAAATA
*
66155126 AACAAAATG
1 AA-AAAATA
* *
66155135 AAATAAGA
1 AAAAAATA
66155143 AAAAAATCA
1 AAAAAAT-A
*
66155152 AAAAAGTAA
1 AAAAAAT-A
66155161 AAAAAATA
1 AAAAAATA
*
66155169 AAAAGATA
1 AAAAAATA
66155177 AAA
1 AAA
66155180 TTTATTAAGG
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
8 19 0.37
9 27 0.53
10 5 0.10
ACGTcount: A:0.79, C:0.04, G:0.06, T:0.11
Consensus pattern (8 bp):
AAAAAATA
Found at i:66155167 original size:34 final size:33
Alignment explanation
Indices: 66155108--66155179 Score: 83
Period size: 34 Copynumber: 2.2 Consensus size: 33
66155098 AGTTAATAAT
*
66155108 AAAAAATAAAACAAAATAAACAAAATGAAATAAGA
1 AAAAAATAAAACAAAATAAAAAAAAT-AAA-AAGA
* *
66155143 AAAAAATCAAA-AAAGTAAAAAAAATAAAAAGA
1 AAAAAATAAAACAAAATAAAAAAAATAAAAAGA
*
66155175 TAAAA
1 AAAAA
66155180 TTTATTAAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
32 8 0.24
33 3 0.09
34 12 0.36
35 10 0.30
ACGTcount: A:0.79, C:0.04, G:0.06, T:0.11
Consensus pattern (33 bp):
AAAAAATAAAACAAAATAAAAAAAATAAAAAGA
Found at i:66155227 original size:17 final size:17
Alignment explanation
Indices: 66155207--66155266 Score: 79
Period size: 16 Copynumber: 3.6 Consensus size: 17
66155197 TAAAAAGTAA
66155207 AAAAAAAAAGAAATATG
1 AAAAAAAAAGAAATATG
66155224 -AAAAAAAAGAAATATG
1 AAAAAAAAAGAAATATG
* *
66155240 AAAATAAAAGAAA-AAG
1 AAAAAAAAAGAAATATG
66155256 AAAACAAAAAG
1 AAAA-AAAAAG
66155267 GTGTCAGACA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
16 22 0.58
17 16 0.42
ACGTcount: A:0.78, C:0.02, G:0.12, T:0.08
Consensus pattern (17 bp):
AAAAAAAAAGAAATATG
Found at i:66155242 original size:23 final size:20
Alignment explanation
Indices: 66155205--66155264 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
66155195 AATAAAAAGT
*
66155205 AAAAAAA-AAAAGAAATATGA
1 AAAAAAAGAAAAGAAA-ATAA
66155225 AAAAAAAGAAATATGAAAATAA
1 AAAAAAAGAAA-A-GAAAATAA
*
66155247 AAGAAAAAGAAAACAAAA
1 AA-AAAAAGAAAAGAAAA
66155265 AGGTGTCAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
20 7 0.21
21 7 0.21
22 7 0.21
23 13 0.38
ACGTcount: A:0.80, C:0.02, G:0.10, T:0.08
Consensus pattern (20 bp):
AAAAAAAGAAAAGAAAATAA
Found at i:66155264 original size:16 final size:16
Alignment explanation
Indices: 66155208--66155252 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
66155198 AAAAAGTAAA
66155208 AAAAAAAAGAAATATG
1 AAAAAAAAGAAATATG
66155224 AAAAAAAAGAAATATG
1 AAAAAAAAGAAATATG
66155240 AAAATAAAAGAAA
1 AAAA-AAAAGAAA
66155253 AAGAAAACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 20 0.71
17 8 0.29
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (16 bp):
AAAAAAAAGAAATATG
Found at i:66157930 original size:53 final size:53
Alignment explanation
Indices: 66157860--66157964 Score: 210
Period size: 53 Copynumber: 2.0 Consensus size: 53
66157850 TGAATTTTTT
66157860 TGTTATTTTTACCAAATTCGAGATAATATGTCTATTTATAACAATGAAAATCA
1 TGTTATTTTTACCAAATTCGAGATAATATGTCTATTTATAACAATGAAAATCA
66157913 TGTTATTTTTACCAAATTCGAGATAATATGTCTATTTATAACAATGAAAATC
1 TGTTATTTTTACCAAATTCGAGATAATATGTCTATTTATAACAATGAAAATC
66157965 GGGCTCTCGC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (53 bp):
TGTTATTTTTACCAAATTCGAGATAATATGTCTATTTATAACAATGAAAATCA
Found at i:66157948 original size:29 final size:29
Alignment explanation
Indices: 66157863--66157949 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
66157853 ATTTTTTTGT
66157863 TATTTTTACCAAATTCGAGATAATATGTC
1 TATTTTTACCAAATTCGAGATAATATGTC
* *
66157892 TATTTATAAC-AA-T-GA-A-AATCATGT-
1 TATTTTTACCAAATTCGAGATAAT-ATGTC
66157916 TATTTTTACCAAATTCGAGATAATATGTC
1 TATTTTTACCAAATTCGAGATAATATGTC
66157945 TATTT
1 TATTT
66157950 ATAACAATGA
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
24 11 0.23
25 7 0.15
26 3 0.06
27 3 0.06
28 7 0.15
29 16 0.34
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (29 bp):
TATTTTTACCAAATTCGAGATAATATGTC
Found at i:66159025 original size:11 final size:11
Alignment explanation
Indices: 66159009--66159044 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
66158999 AAATGTTACA
66159009 TTTATAATAAT
1 TTTATAATAAT
66159020 TTTATAATAAT
1 TTTATAATAAT
* *
66159031 TTTTTTATAAT
1 TTTATAATAAT
66159042 TTT
1 TTT
66159045 GGTTAAATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TTTATAATAAT
Found at i:66161889 original size:6 final size:6
Alignment explanation
Indices: 66161859--66161941 Score: 98
Period size: 6 Copynumber: 13.7 Consensus size: 6
66161849 AAGAAACATT
* * *
66161859 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
66161908 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA
66161942 AAATGAGATC
Statistics
Matches: 66, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
5 2 0.03
6 59 0.89
7 4 0.06
8 1 0.02
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:66162361 original size:22 final size:23
Alignment explanation
Indices: 66162333--66162394 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 23
66162323 GCAAATACGT
*
66162333 TTGGCACACAGCCATAAT-CAGG
1 TTGGCACAAAGCCATAATGCAGG
* *
66162355 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGCAGG
*
66162377 TTGGCGCAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
66162395 TAGAATAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.21
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGCAGG
Found at i:66163152 original size:27 final size:27
Alignment explanation
Indices: 66163118--66163348 Score: 257
Period size: 27 Copynumber: 8.6 Consensus size: 27
66163108 TACAAACTAA
** * *
66163118 GGGTATTTTGGTAATTATACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
66163145 GGGCATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
66163172 TGGTATTTTAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * * *
66163199 GGGTATTTCGGTAATTTTACCTTACAA
1 GGGTATTTCAGTAATTCTACCCTACAG
*
66163226 GGGTATTTCAATAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
66163253 GGGTATTTCGGTAATTTTACCTTACA-
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
66163279 GGGTACTTCAGTAATTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
66163306 GGGTATTTCAATCATTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTACAG
*
66163333 GGGTATTTCAGAAATT
1 GGGTATTTCAGTAATT
66163349 TCGTAAAATA
Statistics
Matches: 169, Mismatches: 34, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 21 0.12
27 148 0.88
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:66163187 original size:81 final size:79
Alignment explanation
Indices: 66163117--66163349 Score: 286
Period size: 81 Copynumber: 2.9 Consensus size: 79
66163107 TTACAAACTA
* * * * *
66163117 AGGGTATTTTGGTAATTATACCCTATAGGGGCATTTCAGTAATTCTACCCTATAGTGGTATTTTA
1 AGGGTATTTCGGTAATTATACCCTATAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCA
*
66163182 GTAATTCTACCCTAC
66 GTAATTTTA-CCTAC
* * * * *
66163197 AGGGGTATTTCGGTAATTTTACCTTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
1 A-GGGTATTTCGGTAATTATACCCTATAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTC
*
66163262 GGTAATTTTACCTTAC
65 AGTAATTTTACC-TAC
* * * *
66163278 AGGGTACTTCAGTAATTCTACCCTATAGGGGTATTTCAATCATTCTACCCTATAGGGGTATTTCA
1 AGGGTATTTCGGTAATTATACCCTATAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCA
*
66163343 GAAATTT
66 GTAATTT
66163350 CGTAAAATAA
Statistics
Matches: 129, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
80 64 0.50
81 65 0.50
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (79 bp):
AGGGTATTTCGGTAATTATACCCTATAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCA
GTAATTTTACCTAC
Found at i:66163349 original size:80 final size:81
Alignment explanation
Indices: 66163128--66163349 Score: 284
Period size: 80 Copynumber: 2.8 Consensus size: 81
66163118 GGGTATTTTG
* * * * *
66163128 GTAATTATACCCTATAGGGGCATTTCAGTAATTCTACCCTATAGTGGTATTTTAGTAATTCTACC
1 GTAATTATACCCTATAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCAGTAATTTTACC
* *
66163193 CTACAGGGGTATTTCG
66 CTACAGGGGTACTTCA
* * * * * *
66163209 GTAATTTTACCTTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATTTTACC
1 GTAATTATACCCTATAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCAGTAATTTTACC
*
66163274 TTACA-GGGTACTTCA
66 CTACAGGGGTACTTCA
* * *
66163289 GTAATTCTACCCTATAGGGGTATTTCAATCATTCTACCCTATAGGGGTATTTCAGAAATTT
1 GTAATTATACCCTATAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCAGTAATTT
66163350 CGTAAAATAA
Statistics
Matches: 119, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
80 61 0.51
81 58 0.49
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.37
Consensus pattern (81 bp):
GTAATTATACCCTATAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCAGTAATTTTACC
CTACAGGGGTACTTCA
Found at i:66165382 original size:19 final size:19
Alignment explanation
Indices: 66165356--66165404 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
66165346 TTTTATTGTA
66165356 ACAAATAATAAAATATCTC
1 ACAAATAATAAAATATCTC
66165375 -CTAAATAATAAAATATCTC
1 AC-AAATAATAAAATATCTC
66165394 ACAAATAATAA
1 ACAAATAATAA
66165405 TTAACAAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.04
19 26 0.93
20 1 0.04
ACGTcount: A:0.59, C:0.14, G:0.00, T:0.27
Consensus pattern (19 bp):
ACAAATAATAAAATATCTC
Found at i:66165774 original size:19 final size:19
Alignment explanation
Indices: 66165739--66165783 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
66165729 TTAGAGAATA
*
66165739 TTGTTATTTGTGAGATAGT
1 TTGTTATTTGAGAGATAGT
*
66165758 TTGTTATTT-AGAGGATATT
1 TTGTTATTTGAGA-GATAGT
66165777 TTGTTAT
1 TTGTTAT
66165784 GTGTCATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 2 0.09
19 21 0.91
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (19 bp):
TTGTTATTTGAGAGATAGT
Found at i:66177093 original size:20 final size:20
Alignment explanation
Indices: 66177070--66177111 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
66177060 CACACACCCA
66177070 TGTGACTTAGGACACGCCCG
1 TGTGACTTAGGACACGCCCG
* *
66177090 TGTGACTTGGGACATGCCCG
1 TGTGACTTAGGACACGCCCG
66177110 TG
1 TG
66177112 CAATCACCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.26, G:0.33, T:0.24
Consensus pattern (20 bp):
TGTGACTTAGGACACGCCCG
Found at i:66180834 original size:46 final size:49
Alignment explanation
Indices: 66180764--66180944 Score: 183
Period size: 50 Copynumber: 3.7 Consensus size: 49
66180754 GGTAGAATGC
*
66180764 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CAT-CAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCCAAGT
* *
66180811 CG-TGCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAAATCCAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-AAATCCAAGT
* * * ** * *
66180859 CGACGCCATGTCCCAGACATGGTTTTACACTAGCTC-TCGTTTATCCATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC--AAATCCAAGT
* * *
66180909 CGATGCAATATCCCAAACATGGTCTTACACTGGCTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
66180945 TCATAATGTG
Statistics
Matches: 110, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
45 3 0.03
46 31 0.28
47 4 0.04
48 6 0.05
49 30 0.27
50 36 0.33
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCCAAGT
Found at i:66180887 original size:49 final size:46
Alignment explanation
Indices: 66180768--66180889 Score: 156
Period size: 46 Copynumber: 2.6 Consensus size: 46
66180758 GAATGCCGAT
* * *
66180768 GCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGTCGC
*
66180814 GCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAAATCCAGGTCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATC--AAT-CAAGTCG-C
*
66180863 GCCATGTCCCAGACATGGTTTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
66180890 AGCTCTCGTT
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
45 3 0.04
46 30 0.45
47 2 0.03
48 6 0.09
49 26 0.39
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (46 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGTCGC
Found at i:66192634 original size:138 final size:137
Alignment explanation
Indices: 66192381--66192644 Score: 377
Period size: 138 Copynumber: 1.9 Consensus size: 137
66192371 TTATCTTTAA
* * * *
66192381 CATGATGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCAGTCATGTTGCCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTA-TCATTTTCAATCAGGTTGCCATGGTATCTT
** *
66192446 TCAACCATGGTCTTATTCATTTCATGTCACGCTGCCATGGTATCTTTCAACCATGGTCTTATTTA
65 TCAACCATGGTCTTACACATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTATTTA
66192511 TTTCCCGT
130 TTTCCCGT
* *
66192519 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-CATGTTTCATATCAGGTTGCCATGGTATCT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTATCAT-TTTCA-ATCAGGTTGCCATGGTATCT
* * * *
66192583 TTCAACCATGGTGTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACTATGGTCTTA
64 TTCAACCATGGTCTTACACATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTA
66192645 CACATTTCAT
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
136 3 0.03
137 5 0.05
138 103 0.93
ACGTcount: A:0.21, C:0.22, G:0.16, T:0.41
Consensus pattern (137 bp):
CATGATGCCATAGTATCTTTCAACCATGGTCTTATCATTTTCAATCAGGTTGCCATGGTATCTTT
CAACCATGGTCTTACACATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTATTTAT
TTCCCGT
Found at i:66192646 original size:46 final size:46
Alignment explanation
Indices: 66192386--66192659 Score: 325
Period size: 46 Copynumber: 6.0 Consensus size: 46
66192376 TTTAACATGA
* * * ** * *
66192386 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCA-GTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
66192432 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*** *** *
66192478 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
**
66192524 TGCCATGGTATCTTTCAACCATGGTCTTACATGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
66192570 TGCCATGGTATCTTTCAACCATGGTGTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
66192616 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
66192660 AGAGTACACT
Statistics
Matches: 205, Mismatches: 22, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
45 5 0.02
46 200 0.98
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:66192659 original size:92 final size:91
Alignment explanation
Indices: 66192386--66192659 Score: 359
Period size: 92 Copynumber: 3.0 Consensus size: 91
66192376 TTTAACATGA
* * *
66192386 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCAGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCAGTCATGTTGCCATGGTATCTTTCAAC
** * *
66192451 CATGGTCTTATTCATTTCATGTCACGC
65 CATGGTCTTACACATTTCATATCAGGC
* *
66192478 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTT-CAGTCATGTTGCCATGGTATCTTTCAAC
** *
66192543 CATGGTCTTACATGTTTCATATCAGGT
65 CATGGTCTTACACATTTCATATCAGGC
* ** * *
66192570 TGCCATGGTATCTTTCAACCATGGTGTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCA-GTCATGTTGCCATGGTATCTTTCAAC
*
66192635 TATGGTCTTACACATTTCATATCAG
65 CATGGTCTTACACATTTCATATCAG
66192660 AGAGTACACT
Statistics
Matches: 158, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
91 4 0.03
92 154 0.97
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.41
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAGTCATGTTGCCATGGTATCTTTCAACC
ATGGTCTTACACATTTCATATCAGGC
Found at i:66195406 original size:29 final size:29
Alignment explanation
Indices: 66195373--66195429 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
66195363 TCACGAAGGT
66195373 TCTCATATAACAAAATCAACCACCAAGAC
1 TCTCATATAACAAAATCAACCACCAAGAC
* * * *
66195402 TCTCATATGATAGAATTAACCACCAAGA
1 TCTCATATAACAAAATCAACCACCAAGA
66195430 TATCCATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.46, C:0.26, G:0.07, T:0.21
Consensus pattern (29 bp):
TCTCATATAACAAAATCAACCACCAAGAC
Found at i:66195578 original size:30 final size:30
Alignment explanation
Indices: 66195543--66195609 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
66195533 ACCATAGAGT
*
66195543 CTTCCACTTA-TTAGAGAATAACCACAAAGG
1 CTTCCACGTATTTA-AGAATAACCACAAAGG
* * *
66195573 TTTCCAAGTATTTAAGAATAGCCACAAAGG
1 CTTCCACGTATTTAAGAATAACCACAAAGG
66195603 CTTCCAC
1 CTTCCAC
66195610 ATTTCGATAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
30 27 0.90
31 3 0.10
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.25
Consensus pattern (30 bp):
CTTCCACGTATTTAAGAATAACCACAAAGG
Found at i:66195867 original size:54 final size:55
Alignment explanation
Indices: 66195713--66195869 Score: 165
Period size: 54 Copynumber: 2.9 Consensus size: 55
66195703 TTTTATCTTT
* * * * *
66195713 TCCCCACATGATGCCATAATCTCAGACTATGTCCTACACTATGTGG-TCTTCATA
1 TCCCCATATGATGCCATAATCCCAGACTAGGTCTTACACTATATGGTTCTTCATA
* * * *
66195767 TCCCCATATGATGCCATAACCACCATGACTAGATCTTACACCATATGGTTC-TCTTA
1 TCCCCATATGATGCCATAATC-CCA-GACTAGGTCTTACACTATATGGTTCTTCATA
** * *
66195823 TCCTTATATGATGCCATAGTCCCAAACTAGGTCTTACACTATATGGT
1 TCCCCATATGATGCCATAATCCCAGACTAGGTCTTACACTATATGGT
66195870 CTTTTTACTA
Statistics
Matches: 84, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
54 39 0.46
55 5 0.06
56 38 0.45
57 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.32
Consensus pattern (55 bp):
TCCCCATATGATGCCATAATCCCAGACTAGGTCTTACACTATATGGTTCTTCATA
Found at i:66197959 original size:30 final size:31
Alignment explanation
Indices: 66197912--66197981 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
66197902 CAATTAAGGG
66197912 TCACAC-ACCTGTATGAACAG-GCCGTGTGCC
1 TCACACGACCTGTATGAAC-GTGCCGTGTGCC
*
66197942 TCACACGACC-GTGTGAACGTGCCGTGTGCC
1 TCACACGACCTGTATGAACGTGCCGTGTGCC
*
66197972 TTACACGACC
1 TCACACGACC
66197982 ACTAGACACT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
29 1 0.03
30 32 0.89
31 3 0.08
ACGTcount: A:0.21, C:0.34, G:0.24, T:0.20
Consensus pattern (31 bp):
TCACACGACCTGTATGAACGTGCCGTGTGCC
Found at i:66205022 original size:51 final size:51
Alignment explanation
Indices: 66204946--66205048 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
66204936 CTTTCAGGAA
66204946 TCATCACACTATCACAGTTTATATATATGGCATGTATAGCTAGACTCTTAC
1 TCATCACACTATCACAGTTTATATATATGGCATGTATAGCTAGACTCTTAC
66204997 TCATCACACTATCACAGTTTATATATATGGCATGTATAGCTAGACTCTTAC
1 TCATCACACTATCACAGTTTATATATATGGCATGTATAGCTAGACTCTTAC
66205048 T
1 T
66205049 TGCTACGTTA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (51 bp):
TCATCACACTATCACAGTTTATATATATGGCATGTATAGCTAGACTCTTAC
Found at i:66208295 original size:37 final size:38
Alignment explanation
Indices: 66208245--66208318 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 38
66208235 GTATTCGAGT
* * *
66208245 TAAATCCCGCAGGCTTCGTGCTGGTA-TATATCCGGGA
1 TAAATCCCGCAGGCCTAGTGCTAGTATTATATCCGGGA
* *
66208282 TAAATGCCGCAGGCCTAGTGCTAGTATTATATTCGGG
1 TAAATCCCGCAGGCCTAGTGCTAGTATTATATCCGGG
66208319 CCTTCGTGCC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
37 22 0.71
38 9 0.29
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (38 bp):
TAAATCCCGCAGGCCTAGTGCTAGTATTATATCCGGGA
Found at i:66208368 original size:43 final size:43
Alignment explanation
Indices: 66208311--66208465 Score: 265
Period size: 43 Copynumber: 3.6 Consensus size: 43
66208301 GCTAGTATTA
*
66208311 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTACCGGTGATGTG
* * *
66208354 TAGTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTACCGGTGATGTG
*
66208397 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTACCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTACCGGTGATGTG
66208440 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
66208466 GTAATGCCGG
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 104 1.00
ACGTcount: A:0.13, C:0.26, G:0.32, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTACCGGTGATGTG
Found at i:66211820 original size:25 final size:25
Alignment explanation
Indices: 66211784--66211856 Score: 103
Period size: 25 Copynumber: 2.9 Consensus size: 25
66211774 AACTCTTATG
*
66211784 AGCTTA-CTGATTTTTAGCTCGTATA
1 AGCTTATC-GATTCTTAGCTCGTATA
*
66211809 AGCTTATCGATTCTTAGCTCGTATG
1 AGCTTATCGATTCTTAGCTCGTATA
*
66211834 AGCTTATCGATTCATAGCTCGTA
1 AGCTTATCGATTCTTAGCTCGTA
66211857 GGATCATACC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
25 43 0.98
26 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (25 bp):
AGCTTATCGATTCTTAGCTCGTATA
Found at i:66211869 original size:25 final size:25
Alignment explanation
Indices: 66211798--66211870 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 25
66211788 TACTGATTTT
** * * *
66211798 TAGCTCGTATAAGCTTATCGATTCT
1 TAGCTCGTAGGAGCATACCGATTCA
* * *
66211823 TAGCTCGTATGAGCTTATCGATTCA
1 TAGCTCGTAGGAGCATACCGATTCA
*
66211848 TAGCTCGTAGGATCATACCGATT
1 TAGCTCGTAGGAGCATACCGATT
66211871 TATAACTCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (25 bp):
TAGCTCGTAGGAGCATACCGATTCA
Found at i:66232296 original size:40 final size:40
Alignment explanation
Indices: 66232242--66232444 Score: 275
Period size: 40 Copynumber: 5.1 Consensus size: 40
66232232 TGAATGATAC
* * *
66232242 CCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
66232281 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
66232321 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
66232361 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
66232401 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
66232441 CCGG
1 CCGG
66232445 CTAAATTCCG
Statistics
Matches: 145, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 9 0.06
40 134 0.92
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:66232359 original size:80 final size:80
Alignment explanation
Indices: 66232238--66232448 Score: 311
Period size: 80 Copynumber: 2.7 Consensus size: 80
66232228 GCATTGAATG
* * *
66232238 ATACCCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
*
66232301 ATTTGTGCGAGTTGCT
65 ATTTGTACGAGTTGCT
* *
66232317 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
66232382 TTTGTACGAGTTGCT
66 TTTGTACGAGTTGCT
* * *
66232397 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
66232449 ATTCCGAAGA
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 18 0.15
80 99 0.83
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTACGAGTTGCT
Found at i:66243107 original size:46 final size:46
Alignment explanation
Indices: 66243035--66243128 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
66243025 AAAGTGTTAG
*
66243035 TTTAGAGACTCACCTGTTAGCCTCAAAGGTAACTTAAACTTCAAAT
1 TTTAGAGACTCACCTGTCAGCCTCAAAGGTAACTTAAACTTCAAAT
*
66243081 TTTAGAGACTCACCTGTCAGCTTCAAAGGTAACTTAAACTTCAAAT
1 TTTAGAGACTCACCTGTCAGCCTCAAAGGTAACTTAAACTTCAAAT
66243127 TT
1 TT
66243129 AGCCTTTCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (46 bp):
TTTAGAGACTCACCTGTCAGCCTCAAAGGTAACTTAAACTTCAAAT
Found at i:66245111 original size:59 final size:59
Alignment explanation
Indices: 66245046--66245164 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
66245036 ATACCTAAGC
66245046 TTGATATGTGACCGAATATACATGGTCTCATATGTGCACATACTTAGACATCATTTCAA
1 TTGATATGTGACCGAATATACATGGTCTCATATGTGCACATACTTAGACATCATTTCAA
66245105 TTGATATGTGACCGAATATACATGGTCTCATATGTGCACATACTTAGACATCATTTCAA
1 TTGATATGTGACCGAATATACATGGTCTCATATGTGCACATACTTAGACATCATTTCAA
66245164 T
1 T
66245165 AATATTCAAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.34
Consensus pattern (59 bp):
TTGATATGTGACCGAATATACATGGTCTCATATGTGCACATACTTAGACATCATTTCAA
Found at i:66246885 original size:40 final size:40
Alignment explanation
Indices: 66246823--66247040 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
66246813 AAGCCAAGTA
* * * *
66246823 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
66246862 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
66246902 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66246942 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
66246982 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
66247022 CGTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
66247041 TTATCATCCA
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 13 0.08
40 150 0.92
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:66255924 original size:47 final size:47
Alignment explanation
Indices: 66255855--66256027 Score: 174
Period size: 47 Copynumber: 3.7 Consensus size: 47
66255845 TGGATATTTG
* *
66255855 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTA
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCCTGAAATGTAACTA
* * * * *
66255902 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAA--A
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTC-CTGA--AATGTAACTA
* *
66255950 TG--TCCGAACTCATTGAGTTGAGTCCGAGTTCTTGAAATGTAACTA
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCCTGAAATGTAACTA
* * * *
66255995 GGCATCCAAACTTATTAAGTTGAGTCTGAGTTC
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTC
66256028 ACTTATGGAT
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 27 0.26
47 57 0.56
48 4 0.04
50 5 0.05
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (47 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCCTGAAATGTAACTA
Found at i:66255973 original size:46 final size:46
Alignment explanation
Indices: 66255906--66256119 Score: 211
Period size: 46 Copynumber: 4.6 Consensus size: 46
66255896 TAACTAGGCA
* *
66255906 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
66255952 TCCGAACTCATTGAGTTGAGTCCGAGTT--C-T-TGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--A--CG
* ** * * *
66255999 TCCAAACTTATTAAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
66256045 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
66256091 CCCGAGCTCGTTGAGTTGAGTCTGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
66256120 GCTTTTGGGT
Statistics
Matches: 137, Mismatches: 22, Indels: 18
0.77 0.12 0.10
Matches are distributed among these distances:
42 2 0.01
43 6 0.04
44 1 0.01
45 1 0.01
46 94 0.69
47 24 0.18
48 1 0.01
49 1 0.01
50 5 0.04
51 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:66256018 original size:93 final size:93
Alignment explanation
Indices: 66255859--66256073 Score: 340
Period size: 93 Copynumber: 2.3 Consensus size: 93
66255849 TATTTGGGCA
* * *
66255859 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCAAACTCATTAAGTTG
*
66255924 AGTCCAAGTTCACTTATGGATGCAAATG
66 AGTCCAAGTTCACTTATGGATGCAAACG
* * *
66255952 TCCGAACTCATTGAGTTGAGTCCGAGTTCTTGAAATGTAACTAGGCATCCAAACTTATTAAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCAAACTCATTAAGTTG
** *
66256017 AGTCTGAGTTCACTTATGGATGCGAACG
66 AGTCCAAGTTCACTTATGGATGCAAACG
66256045 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
66256074 ACTTATGGAT
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 111 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (93 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCAAACTCATTAAGTTG
AGTCCAAGTTCACTTATGGATGCAAACG
Found at i:66260067 original size:15 final size:16
Alignment explanation
Indices: 66260047--66260079 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
66260037 ATGGACTTCT
66260047 TTATTA-AATTTTAAA
1 TTATTAGAATTTTAAA
*
66260062 TTATTAGTATTTTAAA
1 TTATTAGAATTTTAAA
66260078 TT
1 TT
66260080 GGGTATCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TTATTAGAATTTTAAA
Found at i:66266161 original size:49 final size:49
Alignment explanation
Indices: 66266103--66266630 Score: 879
Period size: 49 Copynumber: 10.9 Consensus size: 49
66266093 GTATGAGATG
* *
66266103 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
* *
66266152 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAACGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
* *
66266201 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAACGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
66266250 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAACGTGAAAGAGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
66266299 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
66266346 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
66266395 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
66266442 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
66266491 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
* * *
66266538 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
66266587 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
66266631 TATATGTGTG
Statistics
Matches: 457, Mismatches: 16, Indels: 12
0.94 0.03 0.02
Matches are distributed among these distances:
47 134 0.29
49 323 0.71
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
Found at i:66266376 original size:96 final size:96
Alignment explanation
Indices: 66266103--66266630 Score: 894
Period size: 96 Copynumber: 5.5 Consensus size: 96
66266093 GTATGAGATG
* * *
66266103 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAAGG
*
66266168 CCTAATGGCCAATGTGATGAACGTGAAAGTGTA
64 CCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
66266201 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAACGTGAAAGTGTATATATATGTGATAAGG
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAAGG
* *
66266266 CCTAATGGCCAATGTGATGAACGTGAAAGAGTA
64 CCTAATGGCCAATGTGATGAATGTGAAAGTGTA
66266299 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
66266364 TAATGGCCAATGTGATGAATGTGAAAGTGTA
66 TAATGGCCAATGTGATGAATGTGAAAGTGTA
66266395 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
*
66266460 TAATGGCCAATGTGATGAATGTGAAAGAGTA
66 TAATGGCCAATGTGATGAATGTGAAAGTGTA
66266491 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
* *
66266556 TAATGGCCGATGTGATGAATGTGAAGGTGTA
66 TAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
66266587 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
66266631 TATATGTGTG
Statistics
Matches: 416, Mismatches: 14, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
96 277 0.67
98 139 0.33
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (96 bp):
TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
TAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:66266392 original size:145 final size:145
Alignment explanation
Indices: 66266103--66266630 Score: 875
Period size: 145 Copynumber: 3.6 Consensus size: 145
66266093 GTATGAGATG
* *
66266103 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATATGTGATAAGG
* *
66266168 CCTAATGGCCAATGTGATGAACGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTG
66 CCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAAGGCCTAATGGCCAATGTG
*
66266233 ATGAACGTGAAAGTGTA
129 ATGAATGTGAAAGTGTA
* *
66266250 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAACGTGAAAGAGTATATACATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATATGTGATAAGG
66266315 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
66 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
66266380 GAATGTGAAAGTGTA
131 GAATGTGAAAGTGTA
*
66266395 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATATGTGATAAGG
66266458 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAATGGCCAATGTG
66 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT--ATGTGATAAGGCCTAATGGCCAATGTG
*
66266523 ATGAATGTGAAAGAG--
129 ATGAATGTGAAAGTGTA
* * *
66266538 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATATGTGATAAGG
*
66266603 CCTAATGGCCGATGTGATGAATGTGAAA
66 CCTAATGGCCAATGTGATGAATGTGAAA
66266631 TATATGTGTG
Statistics
Matches: 361, Mismatches: 16, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
143 94 0.26
145 177 0.49
147 90 0.25
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (145 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATATGTGATAAGG
CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
GAATGTGAAAGTGTA
Found at i:66266679 original size:48 final size:48
Alignment explanation
Indices: 66266622--66266834 Score: 212
Period size: 48 Copynumber: 4.2 Consensus size: 48
66266612 CGATGTGATG
*
66266622 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
** * * *
66266670 AATGTGAAATATATGTGTGATATGTATATGTGGTATGTATATGTGGTAAAGCCG
1 AATGTGAAATATATGTGTGATATGTATATGTGGTA---A-A-GCCG-AATGGCT
* *
66266724 AA-GGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTG--AA----ATATA--TGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
66266779 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
66266827 AATGTGAA
1 AATGTGAA
66266835 TGTTGTAACA
Statistics
Matches: 135, Mismatches: 15, Indels: 30
0.75 0.08 0.17
Matches are distributed among these distances:
48 77 0.57
50 4 0.03
51 1 0.01
52 1 0.01
53 4 0.03
54 8 0.06
55 8 0.06
56 4 0.03
57 1 0.01
58 1 0.01
59 4 0.03
61 22 0.16
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.33
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:66266701 original size:13 final size:13
Alignment explanation
Indices: 66266671--66266714 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
66266661 CGAAGGGCTA
* *
66266671 ATGTGAAATATAT
1 ATGTGATATGTAT
*
66266684 GTGTGATATGTAT
1 ATGTGATATGTAT
*
66266697 ATGTGGTATGTAT
1 ATGTGATATGTAT
66266710 ATGTG
1 ATGTG
66266715 GTAAAGCCGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (13 bp):
ATGTGATATGTAT
Found at i:66266710 original size:61 final size:61
Alignment explanation
Indices: 66266631--66266765 Score: 252
Period size: 61 Copynumber: 2.2 Consensus size: 61
66266621 GAATGTGAAA
66266631 TATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTG-G-TATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAATATATGTGTGATATG
66266694 TATATGTGGTATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAATATATGTGTGATATG
66266755 TATATGTGGTA
1 TATATGTGGTA
66266766 AAGCCGAATG
Statistics
Matches: 72, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
61 63 0.88
62 1 0.01
63 8 0.11
ACGTcount: A:0.31, C:0.04, G:0.29, T:0.36
Consensus pattern (61 bp):
TATATGTGGTATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAATATATGTGTGATATG
Found at i:66266715 original size:13 final size:13
Alignment explanation
Indices: 66266679--66266717 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 13
66266669 TAATGTGAAA
66266679 TATATGTGTGATATG
1 TATATGTG-G-TATG
66266694 TATATGTGGTATG
1 TATATGTGGTATG
66266707 TATATGTGGTA
1 TATATGTGGTA
66266718 AAGCCGAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 15 0.62
14 1 0.04
15 8 0.33
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (13 bp):
TATATGTGGTATG
Done.